Query 033881
Match_columns 109
No_of_seqs 34 out of 36
Neff 2.1
Searched_HMMs 46136
Date Fri Mar 29 07:21:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08483 IstB_IS21_ATP: IstB-l 79.0 0.46 1E-05 27.8 -0.5 21 85-107 3-23 (30)
2 TIGR01693 UTase_glnD [Protein- 53.1 14 0.00031 33.1 3.1 31 77-107 765-795 (850)
3 PRK05007 PII uridylyl-transfer 51.4 17 0.00036 33.3 3.3 30 78-107 795-824 (884)
4 PRK05092 PII uridylyl-transfer 46.3 20 0.00043 32.8 3.0 30 78-107 830-859 (931)
5 TIGR01693 UTase_glnD [Protein- 42.5 27 0.00059 31.4 3.2 31 77-107 654-684 (850)
6 PRK01759 glnD PII uridylyl-tra 41.9 29 0.00062 31.7 3.3 29 78-106 770-798 (854)
7 PRK05007 PII uridylyl-transfer 32.9 40 0.00087 30.9 2.8 30 77-106 687-716 (884)
8 PRK00275 glnD PII uridylyl-tra 28.1 55 0.0012 30.2 2.8 30 78-107 801-830 (895)
9 PF01050 MannoseP_isomer: Mann 24.1 63 0.0014 23.8 2.1 74 31-104 59-143 (151)
10 PRK15408 autoinducer 2-binding 22.6 89 0.0019 24.6 2.7 21 77-97 105-125 (336)
11 PRK04374 PII uridylyl-transfer 20.2 98 0.0021 28.7 2.9 30 78-107 783-812 (869)
No 1
>PF08483 IstB_IS21_ATP: IstB-like ATP binding N-terminal; InterPro: IPR013690 This bacterial domain is found to the N terminus of the IPR002611 from INTERPRO-like ATP binding domain in proteins which are putative transposase subunits [].
Probab=79.04 E-value=0.46 Score=27.75 Aligned_cols=21 Identities=43% Similarity=0.844 Sum_probs=17.4
Q ss_pred CCCCCCceEEEEeechhhhhhhc
Q 033881 85 LDSDPDATIVEITFGDRLGALLD 107 (109)
Q Consensus 85 q~sDp~ATvv~v~fGdrlG~LlD 107 (109)
|..+|.+ -+++|-+|||-|+|
T Consensus 3 Q~~~p~~--~~LsFeERl~LLvd 23 (30)
T PF08483_consen 3 QQEQPDT--QELSFEERLGLLVD 23 (30)
T ss_pred hhhCcch--hhcCHHHHHHHHHH
Confidence 4556666 78999999999998
No 2
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=53.08 E-value=14 Score=33.07 Aligned_cols=31 Identities=35% Similarity=0.377 Sum_probs=27.5
Q ss_pred CccEEEecCCCCCCceEEEEeechhhhhhhc
Q 033881 77 PTPKVIIDLDSDPDATIVEITFGDRLGALLD 107 (109)
Q Consensus 77 p~P~V~IDq~sDp~ATvv~v~fGdrlG~LlD 107 (109)
..|.|.|||+..+..|+++|.=.||-|=|-|
T Consensus 765 ~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~ 795 (850)
T TIGR01693 765 VPPRVTILNTASRKATIMEVRALDRPGLLAR 795 (850)
T ss_pred CCCeEEEccCCCCCeEEEEEEECCccHHHHH
Confidence 4578999999999999999999999997644
No 3
>PRK05007 PII uridylyl-transferase; Provisional
Probab=51.36 E-value=17 Score=33.34 Aligned_cols=30 Identities=17% Similarity=0.104 Sum_probs=26.8
Q ss_pred ccEEEecCCCCCCceEEEEeechhhhhhhc
Q 033881 78 TPKVIIDLDSDPDATIVEITFGDRLGALLD 107 (109)
Q Consensus 78 ~P~V~IDq~sDp~ATvv~v~fGdrlG~LlD 107 (109)
.|.|.|||+..++.||+||.=.||-|=|-|
T Consensus 795 ~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~ 824 (884)
T PRK05007 795 PTEVSFLPTHTDRRSYMELIALDQPGLLAR 824 (884)
T ss_pred CCEEEEccCCCCCeEEEEEEeCCchHHHHH
Confidence 468999999999999999999999997644
No 4
>PRK05092 PII uridylyl-transferase; Provisional
Probab=46.30 E-value=20 Score=32.78 Aligned_cols=30 Identities=37% Similarity=0.563 Sum_probs=27.0
Q ss_pred ccEEEecCCCCCCceEEEEeechhhhhhhc
Q 033881 78 TPKVIIDLDSDPDATIVEITFGDRLGALLD 107 (109)
Q Consensus 78 ~P~V~IDq~sDp~ATvv~v~fGdrlG~LlD 107 (109)
.|.|.|||+.++..|+++|.=.||-|=|-+
T Consensus 830 ~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~ 859 (931)
T PRK05092 830 PPRVTIDNEASNRFTVIEVNGRDRPGLLYD 859 (931)
T ss_pred CCEEEEeeCCCCCeEEEEEEECCcCcHHHH
Confidence 489999999999999999999999987654
No 5
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=42.46 E-value=27 Score=31.40 Aligned_cols=31 Identities=26% Similarity=0.198 Sum_probs=27.6
Q ss_pred CccEEEecCCCCCCceEEEEeechhhhhhhc
Q 033881 77 PTPKVIIDLDSDPDATIVEITFGDRLGALLD 107 (109)
Q Consensus 77 p~P~V~IDq~sDp~ATvv~v~fGdrlG~LlD 107 (109)
+.|.|.|+++++..+|+|+|.-.||.|-|-+
T Consensus 654 ~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~ 684 (850)
T TIGR01693 654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAK 684 (850)
T ss_pred CCCEEEEeccCCCCeEEEEEEeCCCCcHHHH
Confidence 5799999999999999999999999996644
No 6
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=41.90 E-value=29 Score=31.75 Aligned_cols=29 Identities=24% Similarity=0.202 Sum_probs=26.1
Q ss_pred ccEEEecCCCCCCceEEEEeechhhhhhh
Q 033881 78 TPKVIIDLDSDPDATIVEITFGDRLGALL 106 (109)
Q Consensus 78 ~P~V~IDq~sDp~ATvv~v~fGdrlG~Ll 106 (109)
.|.|.|||+.....||+||.=-||-|=|-
T Consensus 770 ~~~V~~dn~~s~~~T~iev~a~DrpGLL~ 798 (854)
T PRK01759 770 KTEVRFLNEEKQEQTEMELFALDRAGLLA 798 (854)
T ss_pred CCEEEEccCCCCCeEEEEEEeCCchHHHH
Confidence 36899999999999999999999999664
No 7
>PRK05007 PII uridylyl-transferase; Provisional
Probab=32.92 E-value=40 Score=30.95 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=26.6
Q ss_pred CccEEEecCCCCCCceEEEEeechhhhhhh
Q 033881 77 PTPKVIIDLDSDPDATIVEITFGDRLGALL 106 (109)
Q Consensus 77 p~P~V~IDq~sDp~ATvv~v~fGdrlG~Ll 106 (109)
..|.|.|++..+..+|+|+|.--||.|-|-
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa 716 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFA 716 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHH
Confidence 468899999999999999999999998553
No 8
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=28.13 E-value=55 Score=30.21 Aligned_cols=30 Identities=33% Similarity=0.409 Sum_probs=26.6
Q ss_pred ccEEEecCCCCCCceEEEEeechhhhhhhc
Q 033881 78 TPKVIIDLDSDPDATIVEITFGDRLGALLD 107 (109)
Q Consensus 78 ~P~V~IDq~sDp~ATvv~v~fGdrlG~LlD 107 (109)
.|.|.||++.++.+|+++|.=-||-|=|-+
T Consensus 801 ~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~ 830 (895)
T PRK00275 801 PTQVTISNDAQRPVTVLEIIAPDRPGLLAR 830 (895)
T ss_pred CCEEEEEECCCCCeEEEEEEECCCCCHHHH
Confidence 489999999999999999999999886643
No 9
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=24.12 E-value=63 Score=23.81 Aligned_cols=74 Identities=19% Similarity=0.314 Sum_probs=40.7
Q ss_pred eccCCCCCCcccccccccccC------ceeeeecCcccccccCC----CCCCCCCCCccEE-EecCCCCCCceEEEEeec
Q 033881 31 GSPRFGNKPLCCPARRRFSSS------ATRIIPRASSATAVEDG----SNGDTDTIPTPKV-IIDLDSDPDATIVEITFG 99 (109)
Q Consensus 31 ~s~~~~~kp~~~l~~~Rlsss------~~~i~pra~sa~~~~~g----s~~~~d~vp~P~V-~IDq~sDp~ATvv~v~fG 99 (109)
...+|..|-+......|||-. -.-++-+..+.....+. ..+++-.+|.-.. -|.|..+-...++||++|
T Consensus 59 ~~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEVq~G 138 (151)
T PF01050_consen 59 EGEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDDEEFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEVQTG 138 (151)
T ss_pred ccCCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECCEEEEEcCCCEEEECCCCEEEEECCCCcCcEEEEEecC
Confidence 344454455555555666543 22334444443333222 2233333444443 367777777899999999
Q ss_pred hhhhh
Q 033881 100 DRLGA 104 (109)
Q Consensus 100 drlG~ 104 (109)
+.|++
T Consensus 139 ~~l~e 143 (151)
T PF01050_consen 139 EYLGE 143 (151)
T ss_pred CCCCc
Confidence 99875
No 10
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=22.58 E-value=89 Score=24.65 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=16.3
Q ss_pred CccEEEecCCCCCCceEEEEe
Q 033881 77 PTPKVIIDLDSDPDATIVEIT 97 (109)
Q Consensus 77 p~P~V~IDq~sDp~ATvv~v~ 97 (109)
.+|+|.+|.+.++.....-|.
T Consensus 105 gIpVV~~d~~~~~~~~~~~V~ 125 (336)
T PRK15408 105 GVKVLTWDSDTKPECRSYYIN 125 (336)
T ss_pred CCeEEEeCCCCCCccceEEEe
Confidence 789999999987766665554
No 11
>PRK04374 PII uridylyl-transferase; Provisional
Probab=20.19 E-value=98 Score=28.70 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=26.3
Q ss_pred ccEEEecCCCCCCceEEEEeechhhhhhhc
Q 033881 78 TPKVIIDLDSDPDATIVEITFGDRLGALLD 107 (109)
Q Consensus 78 ~P~V~IDq~sDp~ATvv~v~fGdrlG~LlD 107 (109)
.|.|.+|++.++..|+++|.=-||-|=|-+
T Consensus 783 ~~~V~~~~~~~~~~t~leI~a~DrpGLLa~ 812 (869)
T PRK04374 783 APRVEFSESAGGRRTRISLVAPDRPGLLAD 812 (869)
T ss_pred CCeEEEeecCCCCeEEEEEEeCCcCcHHHH
Confidence 358999999999999999999999987644
Done!