Query 033881
Match_columns 109
No_of_seqs 34 out of 36
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 12:11:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dri_A D-ribose-binding protei 11.9 2E+02 0.0067 19.3 3.1 13 77-89 82-94 (271)
2 3fg8_A Uncharacterized protein 10.9 1.9E+02 0.0065 16.5 2.5 27 66-96 11-37 (118)
3 3t64_A Deoxyuridine 5'-triphos 9.9 1.4E+02 0.0047 21.4 1.9 32 72-106 109-140 (181)
4 3gbv_A Putative LACI-family tr 9.2 2.8E+02 0.0094 18.5 3.1 25 77-101 94-118 (304)
5 3g85_A Transcriptional regulat 9.1 2.5E+02 0.0087 18.7 2.9 14 76-89 90-103 (289)
6 3r8n_B 30S ribosomal protein S 9.1 1E+02 0.0034 23.2 0.9 15 76-90 171-186 (218)
7 3ksm_A ABC-type sugar transpor 8.7 2.9E+02 0.0098 18.1 3.0 25 77-101 84-108 (276)
8 2y72_A Collagenase, collagenas 8.7 3.3E+02 0.011 16.3 3.1 25 76-100 15-42 (85)
9 3o1i_D Periplasmic protein TOR 8.6 2.1E+02 0.007 19.2 2.2 25 77-101 87-116 (304)
10 1wgo_A VPS10 domain-containing 8.3 5.9E+02 0.02 18.1 5.0 21 80-101 51-71 (123)
No 1
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=11.86 E-value=2e+02 Score=19.32 Aligned_cols=13 Identities=15% Similarity=0.350 Sum_probs=10.4
Q ss_pred CccEEEecCCCCC
Q 033881 77 PTPKVIIDLDSDP 89 (109)
Q Consensus 77 p~P~V~IDq~sDp 89 (109)
.+|+|.||+..+.
T Consensus 82 ~iPvV~i~~~~~~ 94 (271)
T 2dri_A 82 NIPVITLDRQATK 94 (271)
T ss_dssp TCCEEEESSCCSS
T ss_pred CCcEEEecCCCCC
Confidence 6899999987543
No 2
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=10.88 E-value=1.9e+02 Score=16.53 Aligned_cols=27 Identities=15% Similarity=0.027 Sum_probs=18.3
Q ss_pred cCCCCCCCCCCCccEEEecCCCCCCceEEEE
Q 033881 66 EDGSNGDTDTIPTPKVIIDLDSDPDATIVEI 96 (109)
Q Consensus 66 ~~gs~~~~d~vp~P~V~IDq~sDp~ATvv~v 96 (109)
++.+..-.+.+|.+++++|. +-.|+.+
T Consensus 11 ~~~~~~il~~~~~~i~~~D~----~g~i~~~ 37 (118)
T 3fg8_A 11 SSGRENLYFQGGLGFMALDE----DLRIIYV 37 (118)
T ss_dssp --CCCCSSSCTTCEEEEECT----TCBEEEE
T ss_pred cchHHHHHhhCCceEEEECC----CCeEEEE
Confidence 45566667889999999984 4566655
No 3
>3t64_A Deoxyuridine 5'-triphosphate nucleotidohydrolase,; hydrolase, DUTP binding, nucleus, hydrolase-hydrolase inhibi complex; HET: DU3; 1.65A {Plasmodium falciparum 3D7} PDB: 3t6y_A* 3t70_A* 3t60_A* 2y8c_A* 1vyq_A*
Probab=9.93 E-value=1.4e+02 Score=21.45 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=24.2
Q ss_pred CCCCCCccEEEecCCCCCCceEEEEeechhhhhhh
Q 033881 72 DTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALL 106 (109)
Q Consensus 72 ~~d~vp~P~V~IDq~sDp~ATvv~v~fGdrlG~Ll 106 (109)
|.|....=.|++.|.++-. ++|.=|||+.||+
T Consensus 109 D~dYrGei~v~l~N~~~~~---~~i~~GdRIaQlv 140 (181)
T 3t64_A 109 DAGYRGEIIAALDNTSDQE---YHIKKNDKLVQLV 140 (181)
T ss_dssp CTTCCSCCEEEEEECSSSC---EEECTTCEEEEEE
T ss_pred CCCCCcEEEEEEEECCCCC---eEeCCCCeEEEEE
Confidence 5566666688888887743 6788999999875
No 4
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=9.19 E-value=2.8e+02 Score=18.50 Aligned_cols=25 Identities=12% Similarity=0.123 Sum_probs=15.3
Q ss_pred CccEEEecCCCCCCceEEEEeechh
Q 033881 77 PTPKVIIDLDSDPDATIVEITFGDR 101 (109)
Q Consensus 77 p~P~V~IDq~sDp~ATvv~v~fGdr 101 (109)
.+|+|.||.+.+....+-.|.+-++
T Consensus 94 ~iPvV~~~~~~~~~~~~~~V~~D~~ 118 (304)
T 3gbv_A 94 GIPYIYIDSQIKDAPPLAFFGQNSH 118 (304)
T ss_dssp TCCEEEESSCCTTSCCSEEEECCHH
T ss_pred CCeEEEEeCCCCCCCceEEEecChH
Confidence 6899999987654322334444433
No 5
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=9.14 E-value=2.5e+02 Score=18.73 Aligned_cols=14 Identities=14% Similarity=0.330 Sum_probs=11.2
Q ss_pred CCccEEEecCCCCC
Q 033881 76 IPTPKVIIDLDSDP 89 (109)
Q Consensus 76 vp~P~V~IDq~sDp 89 (109)
-.+|+|.||.+.+.
T Consensus 90 ~~iPvV~~~~~~~~ 103 (289)
T 3g85_A 90 LTLPIILFNRLSNK 103 (289)
T ss_dssp CSSCEEEESCCCSS
T ss_pred CCCCEEEECCCCCC
Confidence 37899999997654
No 6
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=9.08 E-value=1e+02 Score=23.16 Aligned_cols=15 Identities=47% Similarity=0.855 Sum_probs=12.2
Q ss_pred CCccEE-EecCCCCCC
Q 033881 76 IPTPKV-IIDLDSDPD 90 (109)
Q Consensus 76 vp~P~V-~IDq~sDp~ 90 (109)
+.+|+| ++|-++||+
T Consensus 171 l~IP~IalvDTn~~p~ 186 (218)
T 3r8n_B 171 LGIPVFAIVDTNSDPD 186 (218)
T ss_dssp HTCCCEEECCSSSCCS
T ss_pred hCCCEEEEEeCcCCCc
Confidence 467887 789999996
No 7
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=8.73 E-value=2.9e+02 Score=18.11 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=15.9
Q ss_pred CccEEEecCCCCCCceEEEEeechh
Q 033881 77 PTPKVIIDLDSDPDATIVEITFGDR 101 (109)
Q Consensus 77 p~P~V~IDq~sDp~ATvv~v~fGdr 101 (109)
.+|+|.+|...+....+-.|.+-++
T Consensus 84 ~ipvV~~~~~~~~~~~~~~V~~d~~ 108 (276)
T 3ksm_A 84 NIPVLVVDSDLAGDAHQGLVATDNY 108 (276)
T ss_dssp TCCEEEESSCCSSSCSSEEEECCHH
T ss_pred CCcEEEEecCCCCCCcceEEccCHH
Confidence 7899999988765433334444333
No 8
>2y72_A Collagenase, collagenase G; polycystic kidney disease domain, beta barrel, collagen RECO domain, hydrolase; 1.18A {Clostridium histolyticum} PDB: 3jqu_A 3js7_A
Probab=8.68 E-value=3.3e+02 Score=16.30 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=16.5
Q ss_pred CCccEEEe-cCCCCCCceEE--EEeech
Q 033881 76 IPTPKVII-DLDSDPDATIV--EITFGD 100 (109)
Q Consensus 76 vp~P~V~I-Dq~sDp~ATvv--~v~fGd 100 (109)
.|.++.+- ++-+||+..++ +-.|||
T Consensus 15 ~~~~v~f~~~~s~d~~g~~~~y~W~fgd 42 (85)
T 2y72_A 15 VGRNIEFSGKDSKDEDGKIVSYDWDFGD 42 (85)
T ss_dssp TTCEEEEECTTCBCTTSCEEEEEEECSS
T ss_pred CCcEEEEEEecccCCCCCEEEEEEEECC
Confidence 46666666 56668877665 456887
No 9
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=8.64 E-value=2.1e+02 Score=19.21 Aligned_cols=25 Identities=16% Similarity=-0.062 Sum_probs=17.4
Q ss_pred CccEEEecCCCC-----CCceEEEEeechh
Q 033881 77 PTPKVIIDLDSD-----PDATIVEITFGDR 101 (109)
Q Consensus 77 p~P~V~IDq~sD-----p~ATvv~v~fGdr 101 (109)
.+|+|.||+..+ +...+-.|.+-++
T Consensus 87 ~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~ 116 (304)
T 3o1i_D 87 NTPVFATVNQLDLDEEQSTLLKGEVGVDWY 116 (304)
T ss_dssp TSCEEECSSCCCCCTTTGGGEEEECCCCHH
T ss_pred CCCEEEecCCCcccccCCCceEEEEecCHH
Confidence 789999998876 5555555555443
No 10
>1wgo_A VPS10 domain-containing receptor sorcs2; polycystic kidney disease, PKD, structural genomics, KIAA1329 protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=8.26 E-value=5.9e+02 Score=18.13 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=14.8
Q ss_pred EEEecCCCCCCceEEEEeechh
Q 033881 80 KVIIDLDSDPDATIVEITFGDR 101 (109)
Q Consensus 80 ~V~IDq~sDp~ATvv~v~fGdr 101 (109)
+|..+ .-|-.-|=.++.|||=
T Consensus 51 ~v~le-eGd~~~T~~qvDfGDG 71 (123)
T 1wgo_A 51 VVRQE-QGDVLTTKYQVDLGDG 71 (123)
T ss_dssp EEEES-SCCSCSCEEEEECSSS
T ss_pred EEEEe-cCCccceEEEEEcCCC
Confidence 34443 3466689999999994
Done!