Query 033881
Match_columns 109
No_of_seqs 34 out of 36
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 12:11:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033881.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033881hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nija1 c.37.1.10 (A:2-223) Hy 13.7 34 0.0024 22.6 1.4 22 87-108 175-197 (222)
2 d1duna_ b.85.4.1 (A:) Deoxyuri 11.7 35 0.0026 21.1 0.9 25 79-106 79-103 (120)
3 d1vyqa1 b.85.4.1 (A:1-159) Deo 11.6 40 0.0029 21.8 1.2 51 53-106 86-140 (159)
4 d1l3wa1 b.1.6.1 (A:1-100) C-ca 10.7 67 0.0049 18.3 2.0 21 73-93 14-34 (100)
5 d2fug13 d.15.13.1 (1:250-333) 10.0 59 0.0043 19.5 1.6 16 92-107 13-28 (84)
6 d2dria_ c.93.1.1 (A:) D-ribose 10.0 1.2E+02 0.0088 18.3 3.1 26 76-101 81-106 (271)
7 d1oi1a2 b.34.9.3 (A:140-243) S 9.4 49 0.0036 20.3 1.0 27 75-102 34-63 (104)
8 d1jifa_ d.32.1.2 (A:) Bleomyci 9.4 76 0.0055 17.3 1.8 15 86-100 108-122 (122)
9 d2fdia1 b.82.2.10 (A:15-214) A 9.0 81 0.0059 20.9 2.1 16 85-100 121-136 (200)
10 d1i26a_ g.3.6.3 (A:) PTU-1 {As 8.8 61 0.0045 17.5 1.1 13 32-44 10-23 (34)
No 1
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.66 E-value=34 Score=22.55 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=16.9
Q ss_pred CCCCceEEEEeech-hhhhhhcc
Q 033881 87 SDPDATIVEITFGD-RLGALLDT 108 (109)
Q Consensus 87 sDp~ATvv~v~fGd-rlG~LlDt 108 (109)
-.|.|.|++.++|+ -+..|||+
T Consensus 175 lNP~a~Ii~~~~g~v~~~~ll~~ 197 (222)
T d1nija1 175 INARAPVYTVTHGDIDLGLLFNT 197 (222)
T ss_dssp HCSSSCEEECCSSCCCGGGGSCC
T ss_pred HhCCCeEEEeeCCccCHHHhhCC
Confidence 36889999999998 46666654
No 2
>d1duna_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Equine infectious anemia virus [TaxId: 11665]}
Probab=11.69 E-value=35 Score=21.09 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=19.1
Q ss_pred cEEEecCCCCCCceEEEEeechhhhhhh
Q 033881 79 PKVIIDLDSDPDATIVEITFGDRLGALL 106 (109)
Q Consensus 79 P~V~IDq~sDp~ATvv~v~fGdrlG~Ll 106 (109)
=.+.+.|.++-. +.+.=|||++||+
T Consensus 79 i~v~l~N~~~~~---~~i~~G~rIaQlv 103 (120)
T d1duna_ 79 IQVICTNIGKSN---IKLIEGQKFAQLI 103 (120)
T ss_dssp CEEEEEECSSSC---EEECTTCEEEEEE
T ss_pred EEEEEEECCCCc---EEECCCCEEEEEE
Confidence 367778877643 6788899999985
No 3
>d1vyqa1 b.85.4.1 (A:1-159) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Plasmodium falciparum [TaxId: 5833]}
Probab=11.56 E-value=40 Score=21.75 Aligned_cols=51 Identities=24% Similarity=0.146 Sum_probs=33.1
Q ss_pred eeeeecCcccccc--cCCCC--CCCCCCCccEEEecCCCCCCceEEEEeechhhhhhh
Q 033881 53 TRIIPRASSATAV--EDGSN--GDTDTIPTPKVIIDLDSDPDATIVEITFGDRLGALL 106 (109)
Q Consensus 53 ~~i~pra~sa~~~--~~gs~--~~~d~vp~P~V~IDq~sDp~ATvv~v~fGdrlG~Ll 106 (109)
..|.||++-+-.. -..+. -|.|...-=++.++|.++- -+.|.=|||++||+
T Consensus 86 ~~l~pRSslaK~~l~l~n~~GIIDsgYrGei~v~l~N~~~~---~~~I~~GdRIaQlv 140 (159)
T d1vyqa1 86 FLLFPRSSISKTPLRLANSIGLIDAGYRGEIIAALDNTSDQ---EYHIKKNDKLVQLV 140 (159)
T ss_dssp EEEEECGGGGGTTEEETTSSEEECTTCCSEEEEEEEECSSS---CEEECTTCCCEEEE
T ss_pred EEEEccCCccccCeeecccCccCCCcccceEEEEEEeCCCC---ceEECCCCeEEEEE
Confidence 3577887654211 11111 2556666678889998874 36789999999975
No 4
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=10.74 E-value=67 Score=18.30 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=13.5
Q ss_pred CCCCCccEEEecCCCCCCceE
Q 033881 73 TDTIPTPKVIIDLDSDPDATI 93 (109)
Q Consensus 73 ~d~vp~P~V~IDq~sDp~ATv 93 (109)
...+++.+..+|.|.|-...|
T Consensus 14 ~~~~~~~v~~~~~D~~~n~~i 34 (100)
T d1l3wa1 14 RGPFPKRLVQIKSNKDRFNKV 34 (100)
T ss_dssp CSSSCEEEEECCCSGGGSSCE
T ss_pred CCCCCEEEEEEECCCCCCCcE
Confidence 345567777778777765544
No 5
>d2fug13 d.15.13.1 (1:250-333) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
Probab=10.04 E-value=59 Score=19.54 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=14.1
Q ss_pred eEEEEeechhhhhhhc
Q 033881 92 TIVEITFGDRLGALLD 107 (109)
Q Consensus 92 Tvv~v~fGdrlG~LlD 107 (109)
-|+|+.||--|.+|++
T Consensus 13 GvyEvp~G~tl~elI~ 28 (84)
T d2fug13 13 GVYELPMGTTFRELIY 28 (84)
T ss_dssp EEEEEETTCBHHHHHT
T ss_pred cEEEEcCCCCHHHHHH
Confidence 4799999999999985
No 6
>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}
Probab=9.98 E-value=1.2e+02 Score=18.29 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=18.1
Q ss_pred CCccEEEecCCCCCCceEEEEeechh
Q 033881 76 IPTPKVIIDLDSDPDATIVEITFGDR 101 (109)
Q Consensus 76 vp~P~V~IDq~sDp~ATvv~v~fGdr 101 (109)
-.+|+|.+|.+.+..-.+-.|.+-++
T Consensus 81 ~~ipvV~~~~~~~~~~~~~~V~~d~~ 106 (271)
T d2dria_ 81 ANIPVITLDRQATKGEVVSHIASDNV 106 (271)
T ss_dssp TTCCEEEESSCCSSSCCSEEEEECHH
T ss_pred cceeEEEecccccccccceEEeecch
Confidence 37899999988766655555555443
No 7
>d1oi1a2 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.41 E-value=49 Score=20.28 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=17.3
Q ss_pred CCCccEEEecCCCCC---CceEEEEeechhh
Q 033881 75 TIPTPKVIIDLDSDP---DATIVEITFGDRL 102 (109)
Q Consensus 75 ~vp~P~V~IDq~sDp---~ATvv~v~fGdrl 102 (109)
.+.|=.=.||...-- -|||++| .|+|+
T Consensus 34 ~~GmkLEavD~~~~~~i~vAtV~~v-~g~~l 63 (104)
T d1oi1a2 34 KVGMKLEAIDKKNPYLICPATIGDV-KGDEV 63 (104)
T ss_dssp CTTCEEEEECTTSTTCEEEEEEEEE-ETTEE
T ss_pred CCCCEEEEECCCCCCeEEEEEEEEE-ECCEE
Confidence 345655556655433 4899998 58775
No 8
>d1jifa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Streptomyces verticillus [TaxId: 29309]}
Probab=9.40 E-value=76 Score=17.27 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=12.5
Q ss_pred CCCCCceEEEEeech
Q 033881 86 DSDPDATIVEITFGD 100 (109)
Q Consensus 86 ~sDp~ATvv~v~fGd 100 (109)
-.||+--++|++.||
T Consensus 108 ~~DPdGn~ief~~~~ 122 (122)
T d1jifa_ 108 VRDPAGNCVHFTAGE 122 (122)
T ss_dssp EECTTCCEEEEEECC
T ss_pred EECCCCCEEEEEeCC
Confidence 368999999998886
No 9
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}
Probab=9.00 E-value=81 Score=20.89 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=11.8
Q ss_pred CCCCCCceEEEEeech
Q 033881 85 LDSDPDATIVEITFGD 100 (109)
Q Consensus 85 q~sDp~ATvv~v~fGd 100 (109)
.+.+-...||.||+|.
T Consensus 121 dE~~~~~pIvslSLG~ 136 (200)
T d2fdia1 121 DEPDLRAPIVSVSLGL 136 (200)
T ss_dssp CSSCTTSCEEEEEEES
T ss_pred CccccCCCceEEEEeC
Confidence 3345567899999985
No 10
>d1i26a_ g.3.6.3 (A:) PTU-1 {Assassin bug (Peirates turpis) [TaxId: 181095]}
Probab=8.79 E-value=61 Score=17.47 Aligned_cols=13 Identities=46% Similarity=1.040 Sum_probs=9.3
Q ss_pred ccCC-CCCCccccc
Q 033881 32 SPRF-GNKPLCCPA 44 (109)
Q Consensus 32 s~~~-~~kp~~~l~ 44 (109)
.+-| ++||||+..
T Consensus 10 apcfgtdkpccnpr 23 (34)
T d1i26a_ 10 APCFGTDKPCCNPR 23 (34)
T ss_dssp SCCTTTTCCBSSTT
T ss_pred CCccCCCCCCcChH
Confidence 3446 789999864
Done!