BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033883
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UPS|A Chain A, Crystal Structure Of Iojap-Like Protein From Zymomonas
Mobilis
Length = 136
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 27 DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
D +A ++ IP+ K DY VIA+GRS+ V AQ + + K A +
Sbjct: 32 DDQALEIATIPLAGKSSIADYXVIASGRSSRQVTAXAQKLADRIK-------AATGYVSK 84
Query: 87 VQGQDTGKWVIIDSG 101
++G WV++D+G
Sbjct: 85 IEGLPAADWVLLDAG 99
>pdb|2ID1|A Chain A, X-Ray Crystal Structure Of Protein Cv0518 From
Chromobacterium Violaceum, Northeast Structural Genomics
Consortium Target Cvr5.
pdb|2ID1|B Chain B, X-Ray Crystal Structure Of Protein Cv0518 From
Chromobacterium Violaceum, Northeast Structural Genomics
Consortium Target Cvr5
Length = 130
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 27 DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
D+K D+ + + ++ATG S VK +A ++ K K+ ++
Sbjct: 16 DIKGKDIIELDTSKLTSLFQRXIVATGDSNRQVKALANSVQVKLKEAGVDIVGS------ 69
Query: 87 VQGQDTGKWVIIDSG 101
+G ++G+WV++D+G
Sbjct: 70 -EGHESGEWVLVDAG 83
>pdb|2O5A|A Chain A, Crystal Structure Of Q9kd89 From Bacillus Halodurans.
Northeast Structural Genomics Target Bhr21
pdb|2O5A|B Chain B, Crystal Structure Of Q9kd89 From Bacillus Halodurans.
Northeast Structural Genomics Target Bhr21
Length = 125
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 22 VNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQ 81
VN D KA+ V + D+ +I G S V QAI ++ K+ +E G
Sbjct: 11 VNAVDDKKAEQVVALNXKGISLIADFFLICHGNSEKQV----QAIAHELKKVAQEQG--- 63
Query: 82 MMLPSVQGQDTGKWVIIDSG 101
+ + ++G + +WV+ID G
Sbjct: 64 IEIKRLEGYEQARWVLIDLG 83
>pdb|1OGY|A Chain A, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|C Chain C, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|E Chain E, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|G Chain G, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|I Chain I, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|K Chain K, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|M Chain M, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
pdb|1OGY|O Chain O, Crystal Structure Of The Heterodimeric Nitrate Reductase
From Rhodobacter Sphaeroides
Length = 802
Score = 28.9 bits (63), Expect = 0.68, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 3 GVTKESETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGR 54
G +E T A + P+ V NP A+++ +P G DW + R
Sbjct: 389 GTAREVGTFAHRLPADMVVTNPEHRAHAEEIWKLPAGLLPDWVGAHAVEQDR 440
>pdb|3IO1|A Chain A, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
pdb|3IO1|B Chain B, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
Length = 445
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 64 QAIIYKAKQRQREVGAKQMMLPSVQGQDTGKWVIIDSG 101
+ + +A +R RE GA + LP+ +G G +D+G
Sbjct: 69 EETLARAFERAREQGAPERWLPAFEGGFAGVVATLDTG 106
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 31 DDVKVIPVGEKCDWTDYMVIA 51
DDV +I VG KCD D V+
Sbjct: 107 DDVPMILVGNKCDLEDERVVG 127
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 31 DDVKVIPVGEKCDWTDYMVIA 51
DDV +I VG KCD D V+
Sbjct: 109 DDVPMILVGNKCDLEDERVVG 129
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 31 DDVKVIPVGEKCDWTDYMVIATGR 54
D+ +V+ VG KCD D V+++ R
Sbjct: 109 DNAQVLLVGNKCDMEDERVVSSER 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,088,550
Number of Sequences: 62578
Number of extensions: 102958
Number of successful extensions: 234
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 11
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)