BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033883
(109 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CAF9|IOJAM_ARATH Protein Iojap-related, mitochondrial OS=Arabidopsis thaliana
GN=At1g67620 PE=2 SV=1
Length = 184
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 69/99 (69%), Gaps = 8/99 (8%)
Query: 3 GVTKESETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNI 62
G++ SE L ++ V D+KAD+V VIP C W D+ VIATGRS WH++NI
Sbjct: 37 GISNVSEIL-----TLPEVEKILADVKADNVTVIPTHNHCFWADFTVIATGRSDWHLRNI 91
Query: 63 AQAIIYKAKQRQREVGAKQMMLPSVQGQDTGKWVIIDSG 101
AQA++Y+AKQ+Q+ GAK +MLPSVQG ++ KW++ID G
Sbjct: 92 AQALVYRAKQKQK--GAKHVMLPSVQGYNS-KWIVIDYG 127
>sp|P0AAT8|IOJAP_SHIFL Ribosomal silencing factor RsfS OS=Shigella flexneri GN=rsfS PE=3
SV=1
Length = 105
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 21 VVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAK 80
V++ DLK D+ + V K TD M+I TG S+ HV +IA ++ Q R G
Sbjct: 10 VIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV----QESRAAG-- 63
Query: 81 QMMLP-SVQGQDTGKWVIIDSG 101
+LP V+G+++ W+++D G
Sbjct: 64 --LLPLGVEGENSADWIVVDLG 83
>sp|P0AAT6|IOJAP_ECOLI Ribosomal silencing factor RsfS OS=Escherichia coli (strain K12)
GN=rsfS PE=1 SV=1
Length = 105
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 21 VVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAK 80
V++ DLK D+ + V K TD M+I TG S+ HV +IA ++ Q R G
Sbjct: 10 VIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV----QESRAAG-- 63
Query: 81 QMMLP-SVQGQDTGKWVIIDSG 101
+LP V+G+++ W+++D G
Sbjct: 64 --LLPLGVEGENSADWIVVDLG 83
>sp|P0AAT7|IOJAP_ECOL6 Ribosomal silencing factor RsfS OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=rsfS PE=3 SV=1
Length = 105
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 21 VVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAK 80
V++ DLK D+ + V K TD M+I TG S+ HV +IA ++ Q R G
Sbjct: 10 VIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV----QESRAAG-- 63
Query: 81 QMMLP-SVQGQDTGKWVIIDSG 101
+LP V+G+++ W+++D G
Sbjct: 64 --LLPLGVEGENSADWIVVDLG 83
>sp|Q96EH3|MASU1_HUMAN Mitochondrial assembly of ribosomal large subunit protein 1 OS=Homo
sapiens GN=MALSU1 PE=1 SV=1
Length = 234
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 21/114 (18%)
Query: 3 GVTKESE-TLARKRPSMTSV--VNPTFDL----------KADDVKVIPVGEKCDWTDYMV 49
G+ + +E T+ RP + P FD+ A D+ VI V + +TDY V
Sbjct: 66 GLEERAEGTVNEGRPESDAADHTGPKFDIDMMVSLLRQENARDICVIQVPPEMRYTDYFV 125
Query: 50 IATGRSTWHVKNIAQAII--YKAKQRQREVGAKQMMLPSVQGQDTGKWVIIDSG 101
I +G ST H+ +A ++ YK + +R+ K ++G+DT W+ +D G
Sbjct: 126 IVSGTSTRHLHAMAFYVVKMYKHLKCKRDPHVK------IEGKDTDDWLCVDFG 173
>sp|Q5NLX3|IOJAP_ZYMMO Ribosomal silencing factor RsfS OS=Zymomonas mobilis subsp. mobilis
(strain ATCC 31821 / ZM4 / CP4) GN=rsfS PE=1 SV=1
Length = 133
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 27 DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
D +A ++ IP+ K DYMVIA+GRS+ V +AQ + + K A +
Sbjct: 29 DDQALEIATIPLAGKSSIADYMVIASGRSSRQVTAMAQKLADRIK-------AATGYVSK 81
Query: 87 VQGQDTGKWVIIDSG 101
++G WV++D+G
Sbjct: 82 IEGLPAADWVLLDAG 96
>sp|Q9CWV0|MASU1_MOUSE Mitochondrial assembly of ribosomal large subunit protein 1 OS=Mus
musculus GN=Malsu1 PE=2 SV=1
Length = 228
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 18/102 (17%)
Query: 12 ARKRPSMTSVVNPTFDL----------KADDVKVIPVGEKCDWTDYMVIATGRSTWHVKN 61
AR +P + FD+ A D+ VI V + +TDY VI +G ST H+
Sbjct: 72 ARLQPGPADHIGAKFDIDMLVSLLRQENARDICVIQVPPEMRYTDYFVIGSGTSTRHLHA 131
Query: 62 IAQAII--YKAKQRQREVGAKQMMLPSVQGQDTGKWVIIDSG 101
+ ++ YK + + + K ++G+D W+ +D G
Sbjct: 132 MVHYLVKMYKHLKCRSDPYVK------IEGKDADDWLCVDFG 167
>sp|P44471|IOJAP_HAEIN Ribosomal silencing factor RsfS OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rsfS PE=3 SV=1
Length = 102
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 17 SMTSVVNPTFD-LKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQR 75
++ + T D LK D+ V K TD M+I TG S+ V +A +I + K+
Sbjct: 2 ALVEFLMETLDGLKGTDIVHFDVRGKSSITDNMIICTGTSSRQVSAMADNLITECKKAGF 61
Query: 76 EVGAKQMMLPSVQGQDTGKWVIIDSG 101
E + +G++T W+++D G
Sbjct: 62 ETFGE-------EGKNTADWIVVDLG 80
>sp|O83720|IOJAP_TREPA Ribosomal silencing factor RsfS OS=Treponema pallidum (strain
Nichols) GN=rsfS PE=1 SV=1
Length = 111
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 17 SMTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIAT 52
+ ++V D +A+DV V V +C W D+ V+AT
Sbjct: 6 AASAVAEALCDARAEDVCVFDVSARCGWADFAVVAT 41
>sp|Q7P0P8|IOJAP_CHRVO Ribosomal silencing factor RsfS OS=Chromobacterium violaceum
(strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 /
NCIMB 9131 / NCTC 9757) GN=rsfS PE=1 SV=1
Length = 122
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 27 DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
D+K D+ + + M++ATG S VK +A ++ K K+ ++
Sbjct: 16 DIKGKDIIELDTSKLTSLFQRMIVATGDSNRQVKALANSVQVKLKEAGVDIVGS------ 69
Query: 87 VQGQDTGKWVIIDSG 101
+G ++G+WV++D+G
Sbjct: 70 -EGHESGEWVLVDAG 83
>sp|Q97P97|IOJAP_STRPN Ribosomal silencing factor RsfS OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=rsfS PE=1
SV=1
Length = 117
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 13 RKRPSMTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQ 72
++ + VV + +A+D+ + V + TDY+VI + ++ + IA I ++
Sbjct: 2 NEKELLELVVKAADEKRAEDILALDVQDLTSVTDYLVITSSMNSRQLDAIAANI----RE 57
Query: 73 RQREVGAKQMMLPSVQGQDTGKWVIIDSG 101
+ + G K V+G G WV++D G
Sbjct: 58 KVAQAGFKG---SHVEGDAAGGWVLLDLG 83
>sp|P87020|PRA1_CANAL pH-regulated antigen PRA1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PRA1 PE=2 SV=2
Length = 299
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 22 VNPT-FDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAK 80
+PT +D +AD VK P+ C+ T Y ++TG AQ + A+ G+K
Sbjct: 26 ASPTGYDWRADWVKGFPIDSSCNATQYNQLSTGLQE------AQLLAEHARDHTLRFGSK 79
Query: 81 QMMLPSVQGQDTGK 94
G DT
Sbjct: 80 SPFFRKYFGNDTAS 93
>sp|B9IRL0|LUTA2_BACCQ Lactate utilization protein A 2 OS=Bacillus cereus (strain Q1)
GN=lutA2 PE=3 SV=1
Length = 242
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 43 DWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQ---MMLPSVQGQD 91
+ TD++V G++ W K + +A+ +++ R +G K+ +L V+G D
Sbjct: 110 ELTDFLVNVLGKNNWKSKLVEKAVFHQSCHMSRALGIKEEPLKLLSQVEGLD 161
>sp|Q41822|IOJAP_MAIZE Protein Iojap, chloroplast OS=Zea mays GN=Ij PE=1 SV=1
Length = 228
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 27 DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
++KA D++V+ V WT + +I T S + I+ + R++G KQ +
Sbjct: 126 EIKATDIRVLCVRRLVYWTRFFIILTAFSNAQIDAIS--------SKMRDIGEKQFSKVA 177
Query: 87 VQGQDTGKWVIIDSG 101
W ++D G
Sbjct: 178 SGDTKPNSWTLLDFG 192
>sp|Q638X2|LUTA2_BACCZ Lactate utilization protein A 2 OS=Bacillus cereus (strain ZK /
E33L) GN=lutA2 PE=3 SV=1
Length = 242
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 43 DWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQ---MMLPSVQGQD 91
+ TD++V G++ W K + +A+ +++ R +G K+ +L V+G D
Sbjct: 110 ELTDFLVNVLGKNDWKSKLVEKAVFHQSCHMSRALGIKEEPLKLLSQVEGLD 161
>sp|C1EKT5|LUTA2_BACC3 Lactate utilization protein A 2 OS=Bacillus cereus (strain 03BB102)
GN=lutA2 PE=3 SV=1
Length = 242
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 43 DWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQ---MMLPSVQGQD 91
+ TD++V G++ W K + +A+ +++ R +G K+ +L V+G D
Sbjct: 110 ELTDFLVNVLGKNDWKSKLVEKAVFHQSCHMSRALGIKEEPLKLLSQVEGLD 161
>sp|Q9KD89|IOJAP_BACHD Ribosomal silencing factor RsfS OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=rsfS PE=1 SV=1
Length = 117
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 22 VNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQ 81
VN D KA+ V + + D+ +I G S V QAI ++ K+ +E G +
Sbjct: 11 VNAVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQV----QAIAHELKKVAQEQGIE- 65
Query: 82 MMLPSVQGQDTGKWVIIDSG 101
+ ++G + +WV+ID G
Sbjct: 66 --IKRLEGYEQARWVLIDLG 83
>sp|P73658|IOJAP_SYNY3 Ribosomal silencing factor RsfS OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rsfS PE=1 SV=1
Length = 154
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 29 KADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS-V 87
KA D+ ++ V + DY VI TG S V+ IA I ++Q E+ Q LP+
Sbjct: 42 KAGDLVILKVTDVSYLADYFVICTGFSRTQVRAIADNI-----EKQVELVHGQ--LPTHT 94
Query: 88 QGQDTGKWVIIDSG 101
+G WV+ D G
Sbjct: 95 EGNSESIWVLQDFG 108
>sp|B7JF51|LUTA2_BACC0 Lactate utilization protein A 2 OS=Bacillus cereus (strain AH820)
GN=lutA2 PE=3 SV=1
Length = 242
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 43 DWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQ---MMLPSVQGQD 91
+ TD++V G++ W K + +A+ +++ R +G K+ +L V+G D
Sbjct: 110 ELTDFLVNILGKNDWKSKLVEKAVFHQSCHMSRALGIKEEPLKLLSQVEGLD 161
>sp|Q9LDY9|IOJAC_ARATH Protein Iojap, chloroplastic OS=Arabidopsis thaliana GN=IJ PE=2
SV=1
Length = 238
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 27 DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPS 86
D+KA D+KV+ V WT + +IAT S + I R R++ K+ +
Sbjct: 133 DVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQIDAIG--------SRMRDLAEKKYGKVA 184
Query: 87 VQGQDTGKWVIIDSG 101
W ++D G
Sbjct: 185 NGDVKPNSWTLLDFG 199
>sp|Q81ND5|LUTA2_BACAN Lactate utilization protein A 2 OS=Bacillus anthracis GN=lutA2 PE=3
SV=1
Length = 242
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 43 DWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQ---MMLPSVQGQD 91
+ TD++V G++ W K + +A+ +++ R +G K+ +L V+G D
Sbjct: 110 ELTDFVVNILGKNDWKSKLVEKAVFHQSCHMSRALGIKEEPLKLLSQVEGLD 161
>sp|C3P1X2|LUTA2_BACAA Lactate utilization protein A 2 OS=Bacillus anthracis (strain
A0248) GN=lutA2 PE=3 SV=1
Length = 242
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 43 DWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQ---MMLPSVQGQD 91
+ TD++V G++ W K + +A+ +++ R +G K+ +L V+G D
Sbjct: 110 ELTDFVVNILGKNDWKSKLVEKAVFHQSCHMSRALGIKEEPLKLLSQVEGLD 161
>sp|C3LCL5|LUTA1_BACAC Lactate utilization protein A 1 OS=Bacillus anthracis (strain CDC
684 / NRRL 3495) GN=lutA1 PE=3 SV=1
Length = 242
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 43 DWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQ---MMLPSVQGQD 91
+ TD++V G++ W K + +A+ +++ R +G K+ +L V+G D
Sbjct: 110 ELTDFVVNILGKNDWKSKLVEKAVFHQSCHMSRALGIKEEPLKLLSQVEGLD 161
>sp|P29837|POLG_LANVT Genome polyprotein OS=Langat virus (strain TP21) PE=1 SV=2
Length = 3414
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 30 ADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQ--AIIYKAKQRQREV 77
A + + IP GE D D++ GR+ W V +IA+ AI +QR + V
Sbjct: 1828 ASEERQIPDGEWRDGFDWITEYEGRTAWFVPSIARGGAIARALRQRGKSV 1877
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,836,448
Number of Sequences: 539616
Number of extensions: 1335621
Number of successful extensions: 2775
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2757
Number of HSP's gapped (non-prelim): 25
length of query: 109
length of database: 191,569,459
effective HSP length: 77
effective length of query: 32
effective length of database: 150,019,027
effective search space: 4800608864
effective search space used: 4800608864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)