Query 033883
Match_columns 109
No_of_seqs 138 out of 1014
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 12:12:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ups_A Iojap-like protein; PSI 100.0 5E-34 1.7E-38 201.3 11.6 89 5-106 16-104 (136)
2 2o5a_A BH1328 protein; BHR21, 100.0 3.8E-34 1.3E-38 199.4 10.5 86 8-106 3-88 (125)
3 2id1_A Hypothetical protein; a 100.0 6.1E-34 2.1E-38 199.5 11.2 86 8-106 3-88 (130)
4 5nul_A Flavodoxin; electron tr 80.1 3.1 0.00011 26.8 4.7 40 8-54 12-55 (138)
5 3hly_A Flavodoxin-like domain; 77.9 3.5 0.00012 27.8 4.6 41 8-55 14-62 (161)
6 3fni_A Putative diflavin flavo 77.1 2.8 9.6E-05 28.4 3.9 50 1-60 14-72 (159)
7 2hna_A Protein MIOC, flavodoxi 74.4 6.9 0.00024 25.5 5.2 41 8-55 15-57 (147)
8 3f6r_A Flavodoxin; FMN binding 72.9 6.9 0.00024 25.4 4.9 40 8-54 15-59 (148)
9 1bvy_F Protein (cytochrome P45 69.7 7 0.00024 27.4 4.6 41 8-55 35-78 (191)
10 2fz5_A Flavodoxin; alpha/beta 64.4 11 0.00038 23.7 4.4 52 8-66 13-74 (137)
11 1f4p_A Flavodoxin; electron tr 60.0 11 0.00039 24.2 4.0 40 8-54 14-58 (147)
12 3uxy_A Short-chain dehydrogena 58.2 35 0.0012 24.3 6.7 48 20-68 43-90 (266)
13 4dzz_A Plasmid partitioning pr 57.2 16 0.00056 24.3 4.5 26 21-47 22-47 (206)
14 1ykg_A SIR-FP, sulfite reducta 53.8 17 0.00057 24.3 4.1 41 8-55 23-67 (167)
15 2ko1_A CTR148A, GTP pyrophosph 52.3 32 0.0011 19.9 4.8 49 17-66 18-66 (88)
16 2ark_A Flavodoxin; FMN, struct 51.9 16 0.00056 24.7 3.8 44 8-57 18-65 (188)
17 3pg5_A Uncharacterized protein 51.4 43 0.0015 25.3 6.5 48 17-64 140-195 (361)
18 1s2o_A SPP, sucrose-phosphatas 50.9 12 0.00042 26.3 3.1 18 47-64 36-53 (244)
19 3b6i_A Flavoprotein WRBA; flav 49.5 31 0.0011 23.0 4.9 54 8-67 15-95 (198)
20 2obb_A Hypothetical protein; s 49.5 10 0.00035 25.7 2.4 24 47-74 42-65 (142)
21 3f1l_A Uncharacterized oxidore 48.7 39 0.0013 23.7 5.5 8 102-109 94-101 (252)
22 1obo_A Flavodoxin; electron tr 48.0 29 0.00098 22.8 4.5 38 8-54 15-56 (169)
23 3i1j_A Oxidoreductase, short c 47.0 42 0.0014 23.1 5.4 8 102-109 96-103 (247)
24 1nf2_A Phosphatase; structural 46.5 14 0.00049 26.1 2.9 18 47-64 36-53 (268)
25 4dik_A Flavoprotein; TM0755, e 46.4 34 0.0012 26.7 5.3 50 1-60 275-335 (410)
26 3qgm_A P-nitrophenyl phosphata 45.8 10 0.00035 26.5 2.0 20 47-66 42-61 (268)
27 1xvi_A MPGP, YEDP, putative ma 44.3 13 0.00045 26.7 2.4 18 47-64 44-61 (275)
28 3pdw_A Uncharacterized hydrola 43.6 12 0.00041 26.2 2.1 20 47-66 40-59 (266)
29 3hr4_A Nitric oxide synthase, 43.2 31 0.0011 24.9 4.3 41 7-55 53-97 (219)
30 2dtx_A Glucose 1-dehydrogenase 43.1 85 0.0029 22.1 8.6 48 20-68 23-70 (264)
31 1l6r_A Hypothetical protein TA 43.0 18 0.00061 25.3 2.9 18 47-64 40-57 (227)
32 3hnw_A Uncharacterized protein 42.9 16 0.00054 24.8 2.5 27 46-73 18-44 (138)
33 1vdh_A Muconolactone isomerase 42.7 1E+02 0.0035 22.9 7.6 39 28-68 57-95 (249)
34 2j5a_A 30S ribosomal protein S 41.7 46 0.0016 21.3 4.6 57 43-100 8-71 (110)
35 2zos_A MPGP, mannosyl-3-phosph 41.7 17 0.00058 25.6 2.7 18 47-64 35-52 (249)
36 1mp9_A Tata-binding protein; t 41.2 33 0.0011 24.5 4.1 41 34-74 50-95 (198)
37 1ydg_A Trp repressor binding p 40.6 62 0.0021 21.9 5.4 53 8-67 20-105 (211)
38 1t0t_V APC35880; pentamer, ico 40.6 1.1E+02 0.0037 22.7 7.5 39 28-68 53-91 (248)
39 1ytb_A Protein (tata binding p 40.1 37 0.0013 23.9 4.2 31 44-74 56-87 (180)
40 2b30_A Pvivax hypothetical pro 39.8 23 0.00077 25.9 3.1 17 47-63 63-79 (301)
41 1czn_A Flavodoxin; FMN binding 38.8 32 0.0011 22.5 3.6 39 8-54 14-56 (169)
42 2wp4_A Molybdopterin-convertin 38.8 55 0.0019 22.3 4.8 56 18-73 69-127 (147)
43 2fcr_A Flavodoxin; electron tr 38.3 22 0.00076 23.7 2.7 38 8-54 13-55 (173)
44 2omd_A Molybdopterin-convertin 37.9 41 0.0014 23.1 4.1 56 18-73 67-125 (154)
45 2vzf_A NADH-dependent FMN redu 37.6 32 0.0011 23.4 3.5 49 7-62 17-87 (197)
46 3m21_A Probable tautomerase HP 37.5 48 0.0016 18.7 3.8 21 53-73 13-33 (67)
47 2amj_A Modulator of drug activ 37.5 68 0.0023 22.1 5.3 47 20-67 38-97 (204)
48 1e5d_A Rubredoxin\:oxygen oxid 36.8 39 0.0013 25.2 4.1 40 8-54 266-313 (402)
49 1wr8_A Phosphoglycolate phosph 36.8 26 0.00088 24.2 2.9 17 48-64 39-55 (231)
50 1t3u_A Conserved hypothetical 36.2 28 0.00097 21.8 2.8 28 46-73 15-42 (104)
51 2a5l_A Trp repressor binding p 35.4 39 0.0013 22.5 3.6 53 8-67 19-98 (200)
52 1rkq_A Hypothetical protein YI 34.5 16 0.00053 26.2 1.5 18 46-63 39-56 (282)
53 2x4k_A 4-oxalocrotonate tautom 34.3 48 0.0016 17.8 3.3 22 52-73 12-33 (63)
54 2d1y_A Hypothetical protein TT 34.1 1.2E+02 0.004 21.1 7.0 48 20-68 21-73 (256)
55 2z8u_A Tata-box-binding protei 34.1 50 0.0017 23.4 4.1 41 34-74 50-95 (188)
56 1zpv_A ACT domain protein; str 34.1 71 0.0024 18.6 4.5 56 17-73 18-73 (91)
57 1w6u_A 2,4-dienoyl-COA reducta 34.0 47 0.0016 23.6 4.1 8 102-109 106-113 (302)
58 3ju3_A Probable 2-oxoacid ferr 33.8 48 0.0016 21.2 3.7 23 45-67 14-36 (118)
59 3asz_A Uridine kinase; cytidin 33.2 18 0.0006 24.5 1.5 33 41-73 176-208 (211)
60 1tll_A Nitric-oxide synthase, 33.2 58 0.002 27.2 4.9 41 7-55 24-68 (688)
61 3ry0_A Putative tautomerase; o 33.1 49 0.0017 18.5 3.3 23 51-73 8-30 (65)
62 1j27_A Hypothetical protein TT 33.1 96 0.0033 19.8 7.6 52 20-73 28-81 (102)
63 1rtt_A Conserved hypothetical 32.7 37 0.0013 22.8 3.2 51 8-66 22-98 (193)
64 2pd6_A Estradiol 17-beta-dehyd 32.5 45 0.0015 23.1 3.6 8 102-109 94-101 (264)
65 3r3t_A 30S ribosomal protein S 32.4 22 0.00075 22.4 1.8 56 44-100 6-68 (99)
66 2rcf_A Unidentified carboxysom 32.3 65 0.0022 20.4 4.0 31 28-59 31-61 (91)
67 3lf2_A Short chain oxidoreduct 32.2 74 0.0025 22.3 4.8 8 102-109 89-96 (265)
68 2ohh_A Type A flavoprotein FPR 32.0 50 0.0017 24.6 4.1 52 8-66 270-333 (404)
69 3pgv_A Haloacid dehalogenase-l 32.0 24 0.00081 25.1 2.1 18 47-64 56-73 (285)
70 1ais_A TBP, protein (tata-bind 32.0 58 0.002 22.9 4.1 41 34-74 46-91 (182)
71 3o38_A Short chain dehydrogena 31.8 64 0.0022 22.5 4.4 8 102-109 103-110 (266)
72 1rm1_A Tata-box binding protei 31.6 57 0.002 24.1 4.2 27 48-74 120-147 (240)
73 1u02_A Trehalose-6-phosphate p 30.4 31 0.001 24.1 2.5 18 47-64 40-57 (239)
74 2bpo_A CPR, P450R, NADPH-cytoc 30.3 54 0.0019 27.3 4.3 42 8-55 63-109 (682)
75 1otf_A 4-oxalocrotonate tautom 30.1 60 0.0021 17.5 3.3 23 51-73 8-30 (62)
76 4dry_A 3-oxoacyl-[acyl-carrier 30.0 87 0.003 22.4 5.0 8 102-109 113-120 (281)
77 2zki_A 199AA long hypothetical 29.6 50 0.0017 22.1 3.4 54 7-67 16-97 (199)
78 3nrc_A Enoyl-[acyl-carrier-pro 29.6 1.5E+02 0.0051 20.9 7.0 48 20-68 43-99 (280)
79 4dw8_A Haloacid dehalogenase-l 29.3 35 0.0012 23.8 2.6 18 47-64 40-57 (279)
80 3f4a_A Uncharacterized protein 29.2 69 0.0023 21.6 4.0 26 18-44 35-64 (169)
81 1otg_A 5-carboxymethyl-2-hydro 29.2 39 0.0013 22.0 2.7 28 47-74 59-91 (125)
82 1wcv_1 SOJ, segregation protei 29.2 1.1E+02 0.0039 21.2 5.4 44 20-64 102-153 (257)
83 3mpo_A Predicted hydrolase of 28.7 37 0.0013 23.7 2.6 17 47-63 40-56 (279)
84 3e6q_A Putative 5-carboxymethy 28.5 49 0.0017 22.4 3.1 29 46-74 80-113 (146)
85 3mgj_A Uncharacterized protein 28.4 1.3E+02 0.0045 19.9 7.1 53 17-69 17-71 (118)
86 3e03_A Short chain dehydrogena 28.3 1.6E+02 0.0053 20.7 8.3 49 20-69 21-87 (274)
87 2vxh_A Chlorite dismutase; hem 28.2 1.8E+02 0.0062 21.5 7.5 50 19-68 49-99 (251)
88 1ag9_A Flavodoxin; electron tr 28.2 40 0.0014 22.5 2.7 38 8-54 14-55 (175)
89 3kvo_A Hydroxysteroid dehydrog 28.1 1.9E+02 0.0064 21.6 8.2 49 20-69 60-126 (346)
90 2fue_A PMM 1, PMMH-22, phospho 27.9 38 0.0013 23.9 2.6 13 47-59 47-59 (262)
91 2opa_A Probable tautomerase YW 27.9 70 0.0024 17.2 3.3 22 52-73 9-30 (61)
92 3rku_A Oxidoreductase YMR226C; 27.9 76 0.0026 22.9 4.3 20 48-67 62-81 (287)
93 2bmv_A Flavodoxin; electron tr 27.2 56 0.0019 21.3 3.2 36 8-54 15-54 (164)
94 3r8n_F 30S ribosomal protein S 26.7 35 0.0012 21.5 2.0 54 46-100 5-64 (100)
95 1wgo_A VPS10 domain-containing 26.7 37 0.0013 22.9 2.2 17 86-102 54-70 (123)
96 3dao_A Putative phosphatse; st 26.6 24 0.00084 25.1 1.4 16 47-62 57-72 (283)
97 1t5b_A Acyl carrier protein ph 26.4 1E+02 0.0035 20.3 4.5 28 8-41 18-46 (201)
98 3rih_A Short chain dehydrogena 26.2 1.7E+02 0.0059 21.0 6.1 49 20-69 56-116 (293)
99 1ycg_A Nitric oxide reductase; 25.9 54 0.0018 24.3 3.2 40 8-54 265-312 (398)
100 3dnp_A Stress response protein 25.8 36 0.0012 23.9 2.1 18 47-64 41-58 (290)
101 2q9u_A A-type flavoprotein; fl 25.6 60 0.0021 24.4 3.5 43 8-57 270-320 (414)
102 2q62_A ARSH; alpha/beta, flavo 25.6 1.2E+02 0.0041 21.8 5.0 52 8-66 50-124 (247)
103 3nyw_A Putative oxidoreductase 25.4 1.4E+02 0.0049 20.7 5.3 8 102-109 89-96 (250)
104 3vtz_A Glucose 1-dehydrogenase 24.3 1.9E+02 0.0064 20.3 8.3 49 20-69 29-78 (269)
105 2pq0_A Hypothetical conserved 24.0 36 0.0012 23.6 1.8 17 48-64 39-55 (258)
106 3epr_A Hydrolase, haloacid deh 24.0 32 0.0011 24.0 1.6 19 47-65 39-57 (264)
107 3un1_A Probable oxidoreductase 23.7 1.9E+02 0.0065 20.2 6.9 49 20-69 43-93 (260)
108 3lwb_A D-alanine--D-alanine li 23.3 24 0.00082 26.9 0.8 48 46-100 12-61 (373)
109 3i1m_F 30S ribosomal protein S 23.1 71 0.0024 21.4 3.1 55 45-100 4-64 (135)
110 2amy_A PMM 2, phosphomannomuta 23.1 43 0.0015 23.2 2.1 11 47-57 40-50 (246)
111 3i96_A Ethanolamine utilizatio 23.0 1.7E+02 0.0057 19.4 4.9 42 27-73 59-100 (119)
112 1osc_A Similar to divalent cat 22.9 87 0.003 20.8 3.5 22 47-68 24-45 (126)
113 3mf7_A CIS-3-chloroacrylic aci 22.7 1.5E+02 0.0052 19.8 4.8 54 20-73 23-92 (149)
114 2xcz_A Possible ATLS1-like lig 22.5 65 0.0022 20.0 2.7 21 53-73 67-87 (115)
115 3nn1_A Chlorite dismutase; fer 22.3 2.4E+02 0.0081 20.7 7.5 49 20-68 42-91 (241)
116 3ign_A Diguanylate cyclase; gg 22.2 1.6E+02 0.0054 18.7 7.7 51 18-72 66-116 (177)
117 3i2v_A Adenylyltransferase and 22.1 85 0.0029 19.2 3.2 21 20-42 7-27 (127)
118 3gxh_A Putative phosphatase (D 22.1 31 0.0011 22.9 1.1 9 101-109 98-106 (157)
119 1o5j_A Periplasmic divalent ca 21.9 96 0.0033 20.2 3.5 22 47-68 14-35 (113)
120 3lcm_A SMU.1420, putative oxid 21.4 1.2E+02 0.004 20.7 4.1 45 20-66 22-99 (196)
121 1sqs_A Conserved hypothetical 21.3 1.2E+02 0.0041 21.1 4.2 53 8-66 17-105 (242)
122 1gyx_A YDCE, B1461, hypothetic 21.3 1.3E+02 0.0044 17.3 4.4 22 52-73 9-31 (76)
123 1uku_A CUTA1, periplasmic diva 21.0 1.1E+02 0.0036 19.5 3.5 22 47-68 2-23 (102)
124 3flh_A Uncharacterized protein 20.9 89 0.003 19.5 3.2 26 18-44 19-44 (124)
125 3m20_A 4-oxalocrotonate tautom 20.8 1.2E+02 0.004 16.7 4.0 22 52-73 8-29 (62)
126 1wv9_A Rhodanese homolog TT165 20.8 55 0.0019 19.4 2.0 11 32-42 16-26 (94)
127 2afh_E Nitrogenase iron protei 20.7 1.8E+02 0.0062 20.5 5.1 37 29-65 117-164 (289)
128 3hlu_A Uncharacterized protein 20.7 1.6E+02 0.0054 18.2 5.5 51 17-67 17-67 (96)
129 3hva_A Protein FIMX; ggdef dig 20.7 1.7E+02 0.0058 18.5 6.0 50 19-72 72-121 (177)
130 3iwh_A Rhodanese-like domain p 20.6 77 0.0026 19.5 2.7 13 30-42 16-28 (103)
131 3qe2_A CPR, P450R, NADPH--cyto 20.6 91 0.0031 25.6 3.8 41 8-55 32-81 (618)
132 2eg2_A Nitrogen regulatory pro 20.6 1.6E+02 0.0056 18.3 4.5 56 15-70 10-81 (112)
133 2q5w_E Molybdopterin-convertin 20.5 1.7E+02 0.0057 19.9 4.6 56 18-73 61-119 (149)
134 3kjh_A CO dehydrogenase/acetyl 20.4 2E+02 0.0068 19.2 8.0 45 28-73 129-181 (254)
135 2zbc_A 83AA long hypothetical 20.4 1.3E+02 0.0044 17.0 3.8 41 19-63 16-56 (83)
136 1t0i_A YLR011WP; FMN binding p 20.4 81 0.0028 20.9 3.0 28 7-40 15-47 (191)
137 1rlm_A Phosphatase; HAD family 20.4 36 0.0012 24.0 1.2 16 47-62 39-54 (271)
138 2fzv_A Putative arsenical resi 20.3 1.2E+02 0.0042 22.5 4.2 52 8-66 74-149 (279)
139 1p1l_A CUTA, periplasmic dival 20.2 1.1E+02 0.0039 19.4 3.5 22 47-68 3-24 (102)
140 1k1e_A Deoxy-D-mannose-octulos 20.1 81 0.0028 20.7 2.9 20 47-66 53-72 (180)
No 1
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=100.00 E-value=5e-34 Score=201.25 Aligned_cols=89 Identities=30% Similarity=0.487 Sum_probs=82.0
Q ss_pred ccchHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCCCcccEEEEEEcCCHHHHHHHHHHHHHHHHHhhhhhccccCCC
Q 033883 5 TKESETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMML 84 (109)
Q Consensus 5 ~~~~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~~~aDyfVI~Ta~S~rh~~ala~~i~~~lk~~~~~~~~~~~~~ 84 (109)
+.++++|.+ .++++|+++||+||++|||++++++|||||||||+|+||++|||++|.+.+|+.+ . .+
T Consensus 16 ~~~~~~l~~------~i~~al~dkKa~DI~vlDv~~~s~~~DyfVIatg~S~rqv~Aiad~v~~~lk~~g----~---~~ 82 (136)
T 3ups_A 16 SFDPEMLLK------LVTDSLDDDQALEIATIPLAGKSSIADYMVIASGRSSRQVTAMAQKLADRIKAAT----G---YV 82 (136)
T ss_dssp -CCHHHHHH------HHHHHHHHTTCEEEEEEECTTTCSSCSEEEEEECSSHHHHHHHHHHHHHHHHHHH----C---CC
T ss_pred CCCHHHHHH------HHHHHHHHcCCCCeEEEECCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHHcC----C---cc
Confidence 344666777 9999999999999999999999999999999999999999999999999999875 3 47
Q ss_pred CCcccCCCCCeEEEEcCCEEEE
Q 033883 85 PSVQGQDTGKWVIIDSGLCRIL 106 (109)
Q Consensus 85 ~~vEG~~~~~WvllD~GdiVVh 106 (109)
+++||.++++|+|+||||||||
T Consensus 83 ~~~EG~~~~~WvLlD~GdVvVH 104 (136)
T 3ups_A 83 SKIEGLPAADWVLLDAGDIIIH 104 (136)
T ss_dssp CEEESCSSCSEEEEECSSEEEE
T ss_pred CcccCCCCCCEEEEeCCCEEEE
Confidence 8999999999999999999999
No 2
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=100.00 E-value=3.8e-34 Score=199.42 Aligned_cols=86 Identities=24% Similarity=0.379 Sum_probs=78.5
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCCCcccEEEEEEcCCHHHHHHHHHHHHHHHHHhhhhhccccCCCCCc
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPSV 87 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~~~aDyfVI~Ta~S~rh~~ala~~i~~~lk~~~~~~~~~~~~~~~v 87 (109)
+++|++ .++++|+++||+||++|||++++++|||||||||+|+||++|||++|.+.+|+.| . .++++
T Consensus 3 ~~~l~~------~i~~al~dkKa~DI~vlDv~~~s~~~DyfVIatg~S~rqv~Aiad~v~~~lk~~g----~---~~~~~ 69 (125)
T 2o5a_A 3 NQELLQ------LAVNAVDDKKAEQVVALNMKGISLIADFFLICHGNSEKQVQAIAHELKKVAQEQG----I---EIKRL 69 (125)
T ss_dssp CHHHHH------HHHHHHHHTTCEEEEEEECBTTBC--CEEEEEEESSHHHHHHHHHHHHHHHHHTT----C---CCCEE
T ss_pred HHHHHH------HHHHHHHHcCCCCeEEEEcCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHHcC----C---ccccc
Confidence 456666 9999999999999999999999999999999999999999999999999999874 3 47899
Q ss_pred ccCCCCCeEEEEcCCEEEE
Q 033883 88 QGQDTGKWVIIDSGLCRIL 106 (109)
Q Consensus 88 EG~~~~~WvllD~GdiVVh 106 (109)
||.++++|+|+||||||||
T Consensus 70 EG~~~~~WvLlD~GdVvVH 88 (125)
T 2o5a_A 70 EGYEQARWVLIDLGDVVVH 88 (125)
T ss_dssp ESTTTTSEEEEECSSEEEE
T ss_pred cCCCCCCEEEEeCCCEEEE
Confidence 9999999999999999999
No 3
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=100.00 E-value=6.1e-34 Score=199.50 Aligned_cols=86 Identities=22% Similarity=0.426 Sum_probs=80.8
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCCCcccEEEEEEcCCHHHHHHHHHHHHHHHHHhhhhhccccCCCCCc
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLPSV 87 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~~~aDyfVI~Ta~S~rh~~ala~~i~~~lk~~~~~~~~~~~~~~~v 87 (109)
+++|++ .++++|+|+||+||++|||++++++|||||||||+|+||++|||++|++.+|+.+ . .++++
T Consensus 3 ~~~l~~------~i~~al~dkKa~DI~vlDv~~~s~~~DyfVIaTg~S~rqv~Aiad~v~~~lk~~g----~---~~~~~ 69 (130)
T 2id1_A 3 IQEISK------LAIEALEDIKGKDIIELDTSKLTSLFQRMIVATGDSNRQVKALANSVQVKLKEAG----V---DIVGS 69 (130)
T ss_dssp HHHHHH------HHHHHHHHTTCEEEEEEEGGGTCSSCSEEEEEECSSHHHHHHHHHHHHHHHHHTT----C---CCCBC
T ss_pred HHHHHH------HHHHHHHHcCCCCeEEEEcCCCCcccCEEEEEEcCCHHHHHHHHHHHHHHHHHcC----C---cCccc
Confidence 456777 9999999999999999999999999999999999999999999999999999874 3 47899
Q ss_pred ccCCCCCeEEEEcCCEEEE
Q 033883 88 QGQDTGKWVIIDSGLCRIL 106 (109)
Q Consensus 88 EG~~~~~WvllD~GdiVVh 106 (109)
||.++++|+|+||||||||
T Consensus 70 EG~~~~~WvLlD~GdVvVH 88 (130)
T 2id1_A 70 EGHESGEWVLVDAGDVVVH 88 (130)
T ss_dssp CSTTTSSEEEEEETTEEEE
T ss_pred cCCCCCCEEEEecCCEEEE
Confidence 9999999999999999999
No 4
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=80.09 E-value=3.1 Score=26.76 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=30.9
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCC----CcccEEEEEEcC
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKC----DWTDYMVIATGR 54 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~----~~aDyfVI~Ta~ 54 (109)
++.+++ .+++.|.+. +.++.++|+.+.. .-+|.+||++..
T Consensus 12 T~~iA~------~ia~~l~~~-g~~v~~~~~~~~~~~~l~~~d~iiig~pt 55 (138)
T 5nul_A 12 TEKMAE------LIAKGIIES-GKDVNTINVSDVNIDELLNEDILILGCSA 55 (138)
T ss_dssp HHHHHH------HHHHHHHHT-TCCCEEEEGGGCCHHHHTTCSEEEEEECC
T ss_pred HHHHHH------HHHHHHHHC-CCeEEEEEhhhCCHHHHhhCCEEEEEcCc
Confidence 457888 888888875 5679999998753 246899999875
No 5
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=77.88 E-value=3.5 Score=27.75 Aligned_cols=41 Identities=15% Similarity=0.147 Sum_probs=31.2
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCC--C------cccEEEEEEcCC
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKC--D------WTDYMVIATGRS 55 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~--~------~aDyfVI~Ta~S 55 (109)
++.+++ .+++.|.+. +.++.++|+.+.. . -+|.+||+|..-
T Consensus 14 T~~~A~------~ia~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~d~ii~Gspty 62 (161)
T 3hly_A 14 SDRLSQ------AIGRGLVKT-GVAVEMVDLRAVDPQELIEAVSSARGIVLGTPPS 62 (161)
T ss_dssp HHHHHH------HHHHHHHHT-TCCEEEEETTTCCHHHHHHHHHHCSEEEEECCBS
T ss_pred HHHHHH------HHHHHHHhC-CCeEEEEECCCCCHHHHHHHHHhCCEEEEEcCCc
Confidence 457888 888888775 5579999998853 2 279999998764
No 6
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=77.09 E-value=2.8 Score=28.35 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=34.7
Q ss_pred CCCcccchHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCC-CC--------cccEEEEEEcCCHHHHH
Q 033883 1 MTGVTKESETLARKRPSMTSVVNPTFDLKADDVKVIPVGEK-CD--------WTDYMVIATGRSTWHVK 60 (109)
Q Consensus 1 ~~~~~~~~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~-~~--------~aDyfVI~Ta~S~rh~~ 60 (109)
|||.| +.+++ .+++.|.+. +.++.++|+.+. .. -+|.+||+|..-.-.+.
T Consensus 14 ~~GnT---~~iA~------~ia~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~g~~p 72 (159)
T 3fni_A 14 EYGYS---DRLAQ------AIINGITKT-GVGVDVVDLGAAVDLQELRELVGRCTGLVIGMSPAASAAS 72 (159)
T ss_dssp TSTTH---HHHHH------HHHHHHHHT-TCEEEEEESSSCCCHHHHHHHHHTEEEEEEECCBTTSHHH
T ss_pred CChHH---HHHHH------HHHHHHHHC-CCeEEEEECcCcCCHHHHHHHHHhCCEEEEEcCcCCCCcc
Confidence 44544 47777 888888775 557999999876 31 17889999876544333
No 7
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=74.38 E-value=6.9 Score=25.50 Aligned_cols=41 Identities=7% Similarity=0.013 Sum_probs=27.8
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCCCc--ccEEEEEEcCC
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKCDW--TDYMVIATGRS 55 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~~~--aDyfVI~Ta~S 55 (109)
++.+++ .|++.+.+. +.++.++|......+ .|.+||++..-
T Consensus 15 T~~~A~------~ia~~l~~~-g~~v~~~~~~~~~~l~~~d~vi~g~pt~ 57 (147)
T 2hna_A 15 AEYVAE------HLAEKLEEA-GFTTETLHGPLLEDLPASGIWLVISSTH 57 (147)
T ss_dssp CHHHHH------HHHHHHHHT-TCCEEEECCTTSCSSCSEEEEEEECCTT
T ss_pred HHHHHH------HHHHHHHHC-CCceEEecCCCHHHcccCCeEEEEECcc
Confidence 457788 888888764 557888887654444 46777776553
No 8
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=72.87 E-value=6.9 Score=25.35 Aligned_cols=40 Identities=10% Similarity=0.152 Sum_probs=29.6
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCC--CC---cccEEEEEEcC
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEK--CD---WTDYMVIATGR 54 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~--~~---~aDyfVI~Ta~ 54 (109)
++.+++ .+++.+.+. +.++.++|+.+. .. -+|.+||++..
T Consensus 15 T~~~A~------~ia~~l~~~-g~~v~~~~~~~~~~~~l~~~~d~ii~g~pt 59 (148)
T 3f6r_A 15 TESIAQ------KLEELIAAG-GHEVTLLNAADASAENLADGYDAVLFGCSA 59 (148)
T ss_dssp HHHHHH------HHHHHHHTT-TCEEEEEETTTBCCTTTTTTCSEEEEEECE
T ss_pred HHHHHH------HHHHHHHhC-CCeEEEEehhhCCHhHhcccCCEEEEEecc
Confidence 467888 888888764 557999999874 22 35889999854
No 9
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=69.72 E-value=7 Score=27.42 Aligned_cols=41 Identities=15% Similarity=0.153 Sum_probs=28.6
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCC-CCc--ccEEEEEEcCC
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEK-CDW--TDYMVIATGRS 55 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~-~~~--aDyfVI~Ta~S 55 (109)
.+.+++ .|++.|.+. +.++.++|+.+. ..+ .|.+||++.+-
T Consensus 35 Te~~A~------~ia~~l~~~-g~~v~v~~l~~~~~~l~~~d~vi~g~~Ty 78 (191)
T 1bvy_F 35 AEGTAR------DLADIAMSK-GFAPQVATLDSHAGNLPREGAVLIVTASY 78 (191)
T ss_dssp HHHHHH------HHHHHHHTT-TCCCEEEEGGGSTTCCCSSSEEEEEECCB
T ss_pred HHHHHH------HHHHHHHhC-CCceEEeeHHHhhhhhhhCCeEEEEEeec
Confidence 457777 788887654 567889999872 222 57888887764
No 10
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=64.40 E-value=11 Score=23.69 Aligned_cols=52 Identities=12% Similarity=0.144 Sum_probs=36.0
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCC----CcccEEEEEEcCC----HHH--HHHHHHHH
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKC----DWTDYMVIATGRS----TWH--VKNIAQAI 66 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~----~~aDyfVI~Ta~S----~rh--~~ala~~i 66 (109)
++.+++ .+++.+.+. +.++.++|+.+.. .-+|.+||+|..- .++ ++...+.+
T Consensus 13 T~~~a~------~i~~~l~~~-g~~v~~~~~~~~~~~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l 74 (137)
T 2fz5_A 13 TEAMAN------EIEAAVKAA-GADVESVRFEDTNVDDVASKDVILLGCPAMGSEELEDSVVEPFFTDL 74 (137)
T ss_dssp HHHHHH------HHHHHHHHT-TCCEEEEETTSCCHHHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHH
T ss_pred HHHHHH------HHHHHHHhC-CCeEEEEEcccCCHHHHhcCCEEEEEccccCCCCCCHHHHHHHHHHh
Confidence 467888 888888775 5679999998753 2479999998763 233 55555444
No 11
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=60.02 E-value=11 Score=24.17 Aligned_cols=40 Identities=13% Similarity=0.087 Sum_probs=28.2
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCC--C--c-ccEEEEEEcC
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKC--D--W-TDYMVIATGR 54 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~--~--~-aDyfVI~Ta~ 54 (109)
++.+++ .+++.+.+. +.++.++|+.+.. . - +|.+||+|..
T Consensus 14 t~~~a~------~i~~~l~~~-g~~v~~~~~~~~~~~~l~~~~d~ii~~~p~ 58 (147)
T 1f4p_A 14 TEYTAE------TIARELADA-GYEVDSRDAASVEAGGLFEGFDLVLLGCST 58 (147)
T ss_dssp HHHHHH------HHHHHHHHH-TCEEEEEEGGGCCSTTTTTTCSEEEEEECE
T ss_pred HHHHHH------HHHHHHHhc-CCeeEEEehhhCCHHHhcCcCCEEEEEeCC
Confidence 567777 888887764 4578888887632 2 2 7889998754
No 12
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}
Probab=58.17 E-value=35 Score=24.32 Aligned_cols=48 Identities=15% Similarity=-0.016 Sum_probs=29.1
Q ss_pred HHHHHHHhCCCCCeEEEecCCCCCcccEEEEEEcCCHHHHHHHHHHHHH
Q 033883 20 SVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIY 68 (109)
Q Consensus 20 ~i~~~l~dkKa~dI~vlDv~~~~~~aDyfVI~Ta~S~rh~~ala~~i~~ 68 (109)
.+++.|.+.. -+|++++-+....-.+..+-+.-++...++++.+.+.+
T Consensus 43 aia~~la~~G-~~V~~~~r~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 90 (266)
T 3uxy_A 43 AVVTALRAAG-ARVAVADRAVAGIAADLHLPGDLREAAYADGLPGAVAA 90 (266)
T ss_dssp HHHHHHHHTT-CEEEECSSCCTTSCCSEECCCCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CEEEEEeCCHHHHHhhhccCcCCCCHHHHHHHHHHHHH
Confidence 5666776654 46888876654433444445566666677666665543
No 13
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=57.19 E-value=16 Score=24.31 Aligned_cols=26 Identities=8% Similarity=0.218 Sum_probs=17.7
Q ss_pred HHHHHHhCCCCCeEEEecCCCCCcccE
Q 033883 21 VVNPTFDLKADDVKVIPVGEKCDWTDY 47 (109)
Q Consensus 21 i~~~l~dkKa~dI~vlDv~~~~~~aDy 47 (109)
++..|.. ++..|.++|.....+.+++
T Consensus 22 la~~la~-~g~~vlliD~D~~~~~~~~ 47 (206)
T 4dzz_A 22 IATALSR-SGYNIAVVDTDPQMSLTNW 47 (206)
T ss_dssp HHHHHHH-TTCCEEEEECCTTCHHHHH
T ss_pred HHHHHHH-CCCeEEEEECCCCCCHHHH
Confidence 3444544 6889999999876655554
No 14
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=53.77 E-value=17 Score=24.33 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=28.1
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCC--C--cccEEEEEEcCC
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKC--D--WTDYMVIATGRS 55 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~--~--~aDyfVI~Ta~S 55 (109)
++.+++ .|++.|.+. +.++.++|+.+.. . -.|.+||++..-
T Consensus 23 T~~~A~------~ia~~l~~~-g~~v~~~~~~~~~~~~l~~~d~ii~g~pt~ 67 (167)
T 1ykg_A 23 ARRVAE------ALRDDLLAA-KLNVKLVNAGDYKFKQIASEKLLIVVTSTQ 67 (167)
T ss_dssp HHHHHH------HHHHHHHHH-TCCCEEEEGGGCCGGGGGGCSEEEEEEECB
T ss_pred HHHHHH------HHHHHHHHC-CCceEEeehhhCCHHHhccCCeEEEEEccc
Confidence 457777 788877654 4568888887642 2 257888887765
No 15
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=52.28 E-value=32 Score=19.87 Aligned_cols=49 Identities=6% Similarity=0.086 Sum_probs=31.5
Q ss_pred CHHHHHHHHHhCCCCCeEEEecCCCCCcccEEEEEEcCCHHHHHHHHHHH
Q 033883 17 SMTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAI 66 (109)
Q Consensus 17 ~i~~i~~~l~dkKa~dI~vlDv~~~~~~aDyfVI~Ta~S~rh~~ala~~i 66 (109)
.+..+..++.+. +-+|.-+........+...+.....+..|+..+.+.+
T Consensus 18 ~L~~I~~~la~~-~inI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L 66 (88)
T 2ko1_A 18 MTNQITGVISKF-DTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKL 66 (88)
T ss_dssp HHHHHHHHHTTS-SSCEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCeEEEEEEEcCCEEEEEEEEEECCHHHHHHHHHHH
Confidence 345777777776 5678877776543344455556677777877665544
No 16
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=51.95 E-value=16 Score=24.69 Aligned_cols=44 Identities=18% Similarity=0.307 Sum_probs=32.5
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCC----CcccEEEEEEcCCHH
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKC----DWTDYMVIATGRSTW 57 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~----~~aDyfVI~Ta~S~r 57 (109)
++.+++ .+++.+.+..+.++.++|+.+.. .-+|.+||+|..-.-
T Consensus 18 T~~~a~------~i~~~l~~~~g~~v~~~~l~~~~~~~l~~aD~ii~gsP~y~g 65 (188)
T 2ark_A 18 TKKMAE------LVAEGARSLEGTEVRLKHVDEATKEDVLWADGLAVGSPTNMG 65 (188)
T ss_dssp HHHHHH------HHHHHHHTSTTEEEEEEETTTCCHHHHHHCSEEEEEEECBTT
T ss_pred HHHHHH------HHHHHHhhcCCCeEEEEEhhhCCHHHHHhCCEEEEEeCccCC
Confidence 456777 88888876345689999998853 258999999965433
No 17
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=51.42 E-value=43 Score=25.26 Aligned_cols=48 Identities=15% Similarity=0.058 Sum_probs=35.8
Q ss_pred CHHHHHHHHHhCCCCCeEEEecCCCC--------CcccEEEEEEcCCHHHHHHHHH
Q 033883 17 SMTSVVNPTFDLKADDVKVIPVGEKC--------DWTDYMVIATGRSTWHVKNIAQ 64 (109)
Q Consensus 17 ~i~~i~~~l~dkKa~dI~vlDv~~~~--------~~aDyfVI~Ta~S~rh~~ala~ 64 (109)
.+..+.+.+.+...-|+++||...-- ..+|++||.+-.+..-++++..
T Consensus 140 ~l~~ll~~l~~~~~yD~VIID~pP~l~~~~~~aL~~aD~viip~~~~~~s~~~~~~ 195 (361)
T 3pg5_A 140 WAGQLAHAMERDDRYDVIFFDVGPSLGPFNRTVLLGCDAFVTPTATDLFSFHAFGN 195 (361)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECCSCCSHHHHHHHTTCSEEEEEECCSHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCEEEEECCCCcCHHHHHHHHHCCEEEEEecCChHHHHHHHH
Confidence 34566666666567899999999732 4599999999988777766644
No 18
>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*
Probab=50.89 E-value=12 Score=26.27 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=13.8
Q ss_pred EEEEEEcCCHHHHHHHHH
Q 033883 47 YMVIATGRSTWHVKNIAQ 64 (109)
Q Consensus 47 yfVI~Ta~S~rh~~ala~ 64 (109)
.|+|||||+...++.+.+
T Consensus 36 ~v~iaTGR~~~~~~~~~~ 53 (244)
T 1s2o_A 36 YLAYATGRSYHSARELQK 53 (244)
T ss_dssp EEEEECSSCHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHH
Confidence 589999999877665543
No 19
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=49.51 E-value=31 Score=23.03 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=37.5
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCC-----------------------CCcccEEEEEEcCC----HHHHH
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEK-----------------------CDWTDYMVIATGRS----TWHVK 60 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~-----------------------~~~aDyfVI~Ta~S----~rh~~ 60 (109)
++.+++ .+++.+.+..+.++.++|+.+. -.-+|.+||+|-.= +.+++
T Consensus 15 t~~la~------~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk 88 (198)
T 3b6i_A 15 IETMAR------AVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMR 88 (198)
T ss_dssp HHHHHH------HHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEEEETTEECHHHH
T ss_pred HHHHHH------HHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhhHHHHHHCCEEEEEeChhcCCchHHHH
Confidence 567777 8888887745668999999762 13579999998543 45666
Q ss_pred HHHHHHH
Q 033883 61 NIAQAII 67 (109)
Q Consensus 61 ala~~i~ 67 (109)
+..+.+.
T Consensus 89 ~~ld~~~ 95 (198)
T 3b6i_A 89 TFLDQTG 95 (198)
T ss_dssp HHHTTCH
T ss_pred HHHHHhh
Confidence 6655544
No 20
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=49.50 E-value=10 Score=25.68 Aligned_cols=24 Identities=8% Similarity=0.080 Sum_probs=16.5
Q ss_pred EEEEEEcCCHHHHHHHHHHHHHHHHHhh
Q 033883 47 YMVIATGRSTWHVKNIAQAIIYKAKQRQ 74 (109)
Q Consensus 47 yfVI~Ta~S~rh~~ala~~i~~~lk~~~ 74 (109)
.++|||||+.+....+.+ .+++.+
T Consensus 42 ~iii~TgR~~~~~~~~~~----~l~~~g 65 (142)
T 2obb_A 42 RLILWSVREGELLDEAIE----WCRARG 65 (142)
T ss_dssp EEEECCSCCHHHHHHHHH----HHHTTT
T ss_pred EEEEEeCCCcccHHHHHH----HHHHcC
Confidence 689999999876665433 455554
No 21
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=48.69 E-value=39 Score=23.66 Aligned_cols=8 Identities=13% Similarity=-0.271 Sum_probs=7.2
Q ss_pred CEEEEccC
Q 033883 102 LCRILNSL 109 (109)
Q Consensus 102 diVVh~~~ 109 (109)
|++|||+|
T Consensus 94 d~lv~nAg 101 (252)
T 3f1l_A 94 DGVLHNAG 101 (252)
T ss_dssp SEEEECCC
T ss_pred CEEEECCc
Confidence 89999986
No 22
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=48.00 E-value=29 Score=22.78 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=25.7
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCC--C--cccEEEEEEcC
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKC--D--WTDYMVIATGR 54 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~--~--~aDyfVI~Ta~ 54 (109)
++.+++ .+++.+.+. .+.++|+.+.. . -+|.+||++..
T Consensus 15 T~~vA~------~ia~~l~~~---~v~~~~~~~~~~~~l~~~d~ii~g~p~ 56 (169)
T 1obo_A 15 TESVAE------IIRDEFGND---VVTLHDVSQAEVTDLNDYQYLIIGCPT 56 (169)
T ss_dssp HHHHHH------HHHHHHCTT---TEEEEETTTCCGGGGGGCSEEEEEEEE
T ss_pred HHHHHH------HHHHHhCcC---CcEEEEcccCCHHHHhhCCEEEEEEee
Confidence 457777 777777553 68888887642 1 25777777655
No 23
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=46.98 E-value=42 Score=23.10 Aligned_cols=8 Identities=13% Similarity=-0.184 Sum_probs=7.1
Q ss_pred CEEEEccC
Q 033883 102 LCRILNSL 109 (109)
Q Consensus 102 diVVh~~~ 109 (109)
|++|||+|
T Consensus 96 d~lv~nAg 103 (247)
T 3i1j_A 96 DGLLHNAS 103 (247)
T ss_dssp SEEEECCC
T ss_pred CEEEECCc
Confidence 89999986
No 24
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10
Probab=46.48 E-value=14 Score=26.13 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=14.1
Q ss_pred EEEEEEcCCHHHHHHHHH
Q 033883 47 YMVIATGRSTWHVKNIAQ 64 (109)
Q Consensus 47 yfVI~Ta~S~rh~~ala~ 64 (109)
.|+|||||+...++.+.+
T Consensus 36 ~v~iaTGR~~~~~~~~~~ 53 (268)
T 1nf2_A 36 YVVFASGRMLVSTLNVEK 53 (268)
T ss_dssp EEEEECSSCHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHH
Confidence 579999999887766544
No 25
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=46.41 E-value=34 Score=26.72 Aligned_cols=50 Identities=8% Similarity=0.128 Sum_probs=32.7
Q ss_pred CCCcccchHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCC-----------CcccEEEEEEcCCHHHHH
Q 033883 1 MTGVTKESETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKC-----------DWTDYMVIATGRSTWHVK 60 (109)
Q Consensus 1 ~~~~~~~~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~-----------~~aDyfVI~Ta~S~rh~~ 60 (109)
|+|.| +.+++ .+++.|.++..+. ++.++.+.+ .-+|.+||+|-+-...+.
T Consensus 275 ~yGnT---e~mA~------~ia~gl~~~Gv~~-~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~~~~~~ 335 (410)
T 4dik_A 275 MYGFV---ENVMK------KAIDSLKEKGFTP-VVYKFSDEERPAISEILKDIPDSEALIFGVSTYEAEIH 335 (410)
T ss_dssp SSSHH---HHHHH------HHHHHHHHTTCEE-EEEEECSSCCCCHHHHHHHSTTCSEEEEEECCTTSSSC
T ss_pred ccChH---HHHHH------HHHHHHHhcCCce-EEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCcCCcCC
Confidence 56655 47777 8888888866554 444444332 137899999988665443
No 26
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=45.83 E-value=10 Score=26.48 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=15.2
Q ss_pred EEEEEEcCCHHHHHHHHHHH
Q 033883 47 YMVIATGRSTWHVKNIAQAI 66 (109)
Q Consensus 47 yfVI~Ta~S~rh~~ala~~i 66 (109)
.++||||+|.|....++..+
T Consensus 42 ~v~l~Tgr~~r~~~~~~~~l 61 (268)
T 3qgm_A 42 KIIFVSNNSTRSRRILLERL 61 (268)
T ss_dssp EEEEEECCSSSCHHHHHHHH
T ss_pred eEEEEeCcCCCCHHHHHHHH
Confidence 58999998888777665544
No 27
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10
Probab=44.28 E-value=13 Score=26.65 Aligned_cols=18 Identities=0% Similarity=0.215 Sum_probs=14.1
Q ss_pred EEEEEEcCCHHHHHHHHH
Q 033883 47 YMVIATGRSTWHVKNIAQ 64 (109)
Q Consensus 47 yfVI~Ta~S~rh~~ala~ 64 (109)
.|+|||||+...++.+.+
T Consensus 44 ~~~iaTGR~~~~~~~~~~ 61 (275)
T 1xvi_A 44 PVILCSSKTSAEMLYLQK 61 (275)
T ss_dssp CEEEECSSCHHHHHHHHH
T ss_pred eEEEEcCCCHHHHHHHHH
Confidence 488999999887766544
No 28
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=43.56 E-value=12 Score=26.17 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=14.5
Q ss_pred EEEEEEcCCHHHHHHHHHHH
Q 033883 47 YMVIATGRSTWHVKNIAQAI 66 (109)
Q Consensus 47 yfVI~Ta~S~rh~~ala~~i 66 (109)
.++||||+|.|....++..+
T Consensus 40 ~v~laTgrs~r~~~~~~~~l 59 (266)
T 3pdw_A 40 PYLFVTNNSSRTPKQVADKL 59 (266)
T ss_dssp CEEEEESCCSSCHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHH
Confidence 46899998887777665544
No 29
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=43.16 E-value=31 Score=24.95 Aligned_cols=41 Identities=20% Similarity=0.067 Sum_probs=27.2
Q ss_pred chHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCC--Cc--ccEEEEEEcCC
Q 033883 7 ESETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKC--DW--TDYMVIATGRS 55 (109)
Q Consensus 7 ~~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~--~~--aDyfVI~Ta~S 55 (109)
..+.+++ .+++.+. .+-++.++++.+.. .+ .+.+||+|.+-
T Consensus 53 nte~~A~------~La~~l~--~g~~v~v~~l~~~~~~~l~~~~~vI~~tsTy 97 (219)
T 3hr4_A 53 KSEALAW------DLGALFS--CAFNPKVVCMDKYRLSCLEEERLLLVVTSTF 97 (219)
T ss_dssp HHHHHHH------HHHHHHT--TTSEEEEEEGGGCCGGGGGTCSEEEEEEECB
T ss_pred HHHHHHH------HHHHHHH--cCCCeEEEEcccCCHhHhccCCeEEEEEecc
Confidence 3567888 7777762 56788898887653 22 45677776654
No 30
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=43.13 E-value=85 Score=22.11 Aligned_cols=48 Identities=10% Similarity=0.008 Sum_probs=30.5
Q ss_pred HHHHHHHhCCCCCeEEEecCCCCCcccEEEEEEcCCHHHHHHHHHHHHH
Q 033883 20 SVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIY 68 (109)
Q Consensus 20 ~i~~~l~dkKa~dI~vlDv~~~~~~aDyfVI~Ta~S~rh~~ala~~i~~ 68 (109)
.+++.|.++. -+|++++-+....--=.++.|.-++...++++.+.+.+
T Consensus 23 ~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 70 (264)
T 2dtx_A 23 AIAERFVDEG-SKVIDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFK 70 (264)
T ss_dssp HHHHHHHHTT-CEEEEEESSCCCSCSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CEEEEEecCcccCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 5667776654 47888887654321124556677777777777666554
No 31
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Probab=43.01 E-value=18 Score=25.28 Aligned_cols=18 Identities=11% Similarity=0.032 Sum_probs=14.3
Q ss_pred EEEEEEcCCHHHHHHHHH
Q 033883 47 YMVIATGRSTWHVKNIAQ 64 (109)
Q Consensus 47 yfVI~Ta~S~rh~~ala~ 64 (109)
.|+|||||+...++.+++
T Consensus 40 ~~~i~TGr~~~~~~~~~~ 57 (227)
T 1l6r_A 40 TVSLLSGNVIPVVYALKI 57 (227)
T ss_dssp EEEEECSSCHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHH
Confidence 578999999888776654
No 32
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=42.92 E-value=16 Score=24.83 Aligned_cols=27 Identities=15% Similarity=-0.061 Sum_probs=22.8
Q ss_pred cEEEEEEcCCHHHHHHHHHHHHHHHHHh
Q 033883 46 DYMVIATGRSTWHVKNIAQAIIYKAKQR 73 (109)
Q Consensus 46 DyfVI~Ta~S~rh~~ala~~i~~~lk~~ 73 (109)
.|-|.|. .++.|++.+|..|.+.+++-
T Consensus 18 ~Y~i~g~-e~ee~L~~vA~~vd~km~ei 44 (138)
T 3hnw_A 18 VIKLGGY-ESEEYLQRVASYINNKITEF 44 (138)
T ss_dssp EEEECSC-SCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCC-CcHHHHHHHHHHHHHHHHHH
Confidence 5667766 57999999999999999875
No 33
>1vdh_A Muconolactone isomerase-like protein; beta barrel, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: d.58.4.10
Probab=42.67 E-value=1e+02 Score=22.88 Aligned_cols=39 Identities=5% Similarity=-0.051 Sum_probs=33.5
Q ss_pred CCCCCeEEEecCCCCCcccEEEEEEcCCHHHHHHHHHHHHH
Q 033883 28 LKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIY 68 (109)
Q Consensus 28 kKa~dI~vlDv~~~~~~aDyfVI~Ta~S~rh~~ala~~i~~ 68 (109)
.+.....+.|+.+.. ||+|+...+.+..+++++-..+.+
T Consensus 57 ~~~~~~~~Y~v~G~r--ADlm~w~~~~~~~~Lq~~~~~~~r 95 (249)
T 1vdh_A 57 AGQGSYGIYQVVGHK--ADLLFLNLRPGLDPLLEAEARLSR 95 (249)
T ss_dssp TTSCEEEEEEECSTT--CSEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCceEEEEEEecCCc--ccEEEEEeCCCHHHHHHHHHHHHh
Confidence 556667799999988 999999999999999988777764
No 34
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=41.70 E-value=46 Score=21.30 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=42.4
Q ss_pred CcccEEEEEEcC-CHHHHHHHHHHHHHHHHHhhh------hhccccCCCCCcccCCCCCeEEEEc
Q 033883 43 DWTDYMVIATGR-STWHVKNIAQAIIYKAKQRQR------EVGAKQMMLPSVQGQDTGKWVIIDS 100 (109)
Q Consensus 43 ~~aDyfVI~Ta~-S~rh~~ala~~i~~~lk~~~~------~~~~~~~~~~~vEG~~~~~WvllD~ 100 (109)
...+.++|.... ++.++.++.+.+.+.+.+.|- +-|.+. ..+.+.....|.+++++|
T Consensus 8 ~~YE~~~Il~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~-LAY~I~K~~~G~Y~l~~f 71 (110)
T 2j5a_A 8 RYYETVFAVKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQ-LAYPIQKFNNARYFLVQF 71 (110)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEE-CSSCSSSCSEEEEEEEEE
T ss_pred CcceEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcc-cccCcCCCCEEEEEEEEE
Confidence 345778888887 899999999999999988752 113332 345677777889999886
No 35
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A
Probab=41.67 E-value=17 Score=25.55 Aligned_cols=18 Identities=0% Similarity=0.091 Sum_probs=14.3
Q ss_pred EEEEEEcCCHHHHHHHHH
Q 033883 47 YMVIATGRSTWHVKNIAQ 64 (109)
Q Consensus 47 yfVI~Ta~S~rh~~ala~ 64 (109)
.|+|||||+...++.+.+
T Consensus 35 ~~~i~Tgr~~~~~~~~~~ 52 (249)
T 2zos_A 35 EIIFNSSKTRAEQEYYRK 52 (249)
T ss_dssp EEEEBCSSCHHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHH
Confidence 589999999887766544
No 36
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=41.16 E-value=33 Score=24.55 Aligned_cols=41 Identities=17% Similarity=0.147 Sum_probs=31.5
Q ss_pred EEEecCCCC----CcccEEEEEEc-CCHHHHHHHHHHHHHHHHHhh
Q 033883 34 KVIPVGEKC----DWTDYMVIATG-RSTWHVKNIAQAIIYKAKQRQ 74 (109)
Q Consensus 34 ~vlDv~~~~----~~aDyfVI~Ta-~S~rh~~ala~~i~~~lk~~~ 74 (109)
.++.+++.. -|.---++||| +|..+++.-++.+.+.+++.|
T Consensus 50 li~Rl~~Pk~t~lIF~SGKiv~TGakS~e~a~~a~~~i~~~L~~lG 95 (198)
T 1mp9_A 50 LIFRLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKKYG 95 (198)
T ss_dssp EEEEETTTTEEEEECTTSEEEEECCSSHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEcCCCceEEEEeCCCeEEEeccCCHHHHHHHHHHHHHHHHHcC
Confidence 556666542 25666788999 999999999999999998764
No 37
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=40.62 E-value=62 Score=21.91 Aligned_cols=53 Identities=13% Similarity=0.309 Sum_probs=38.1
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCC-----------------------C------CcccEEEEEEcC----
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEK-----------------------C------DWTDYMVIATGR---- 54 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~-----------------------~------~~aDyfVI~Ta~---- 54 (109)
++.+++ .+++.+.+ .+.++.++|+.+. . ..+|.+||+|-.
T Consensus 20 T~~la~------~i~~~l~~-~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~gsP~y~~~ 92 (211)
T 1ydg_A 20 GYAMAQ------EAAEAGRA-AGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSPTRFGG 92 (211)
T ss_dssp HHHHHH------HHHHHHHH-TTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEEEEETTE
T ss_pred HHHHHH------HHHHHHhc-CCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEEcCccccC
Confidence 567777 88888877 4568999999873 1 157999999854
Q ss_pred CHHHHHHHHHHHH
Q 033883 55 STWHVKNIAQAII 67 (109)
Q Consensus 55 S~rh~~ala~~i~ 67 (109)
-+.++++..+.+.
T Consensus 93 ~~~~lk~~ld~~~ 105 (211)
T 1ydg_A 93 ATSQMRAFIDTLG 105 (211)
T ss_dssp ECHHHHHHHHTTH
T ss_pred ccHHHHHHHHHhc
Confidence 3456777666654
No 38
>1t0t_V APC35880; pentamer, icosahedral, structural genomics, protein structure initiative, MCSG, PSI; HET: P33; 1.75A {Geobacillus stearothermophilus} SCOP: d.58.4.10
Probab=40.55 E-value=1.1e+02 Score=22.66 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=33.0
Q ss_pred CCCCCeEEEecCCCCCcccEEEEEEcCCHHHHHHHHHHHHH
Q 033883 28 LKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIY 68 (109)
Q Consensus 28 kKa~dI~vlDv~~~~~~aDyfVI~Ta~S~rh~~ala~~i~~ 68 (109)
.+.....+.|+.+.. ||+|+...+.+..+++++-..+.+
T Consensus 53 ~~~~~~~~Y~v~G~r--aDlm~w~~~~~~~~lq~~~~~~~r 91 (248)
T 1t0t_V 53 EKQGSHAVYTIVGQK--ADILFMILRPTLDELHEIETALNK 91 (248)
T ss_dssp TTSCEEEEEEECSSS--CSEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCceEEEEEEecCCc--ccEEEEEeCCCHHHHHHHHHHHHh
Confidence 556667799999987 999999999999999988776653
No 39
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=40.11 E-value=37 Score=23.95 Aligned_cols=31 Identities=13% Similarity=0.080 Sum_probs=24.6
Q ss_pred cccEEEEEEc-CCHHHHHHHHHHHHHHHHHhh
Q 033883 44 WTDYMVIATG-RSTWHVKNIAQAIIYKAKQRQ 74 (109)
Q Consensus 44 ~aDyfVI~Ta-~S~rh~~ala~~i~~~lk~~~ 74 (109)
|.--=|+||| +|...++.-++.+.+.+++.|
T Consensus 56 F~SGKiv~TGaks~e~~~~a~~~i~~~L~~lg 87 (180)
T 1ytb_A 56 FASGKMVVTGAKSEDDSKLASRKYARIIQKIG 87 (180)
T ss_dssp CTTSEEEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred ECCCeEEEEecCCHHHHHHHHHHHHHHHHHcC
Confidence 4444477887 899999999999999998864
No 40
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10
Probab=39.78 E-value=23 Score=25.87 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=14.1
Q ss_pred EEEEEEcCCHHHHHHHH
Q 033883 47 YMVIATGRSTWHVKNIA 63 (109)
Q Consensus 47 yfVI~Ta~S~rh~~ala 63 (109)
.|+|||||+...+..+.
T Consensus 63 ~v~iaTGR~~~~~~~~~ 79 (301)
T 2b30_A 63 MVSICTGRSKVGILSAF 79 (301)
T ss_dssp EEEEECSSCHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHh
Confidence 68999999987777665
No 41
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=38.80 E-value=32 Score=22.53 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=25.3
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCC--C--cccEEEEEEcC
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKC--D--WTDYMVIATGR 54 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~--~--~aDyfVI~Ta~ 54 (109)
++.+++ .+++.+.+. .++.++|+.+.. . -+|.+||++..
T Consensus 14 T~~vA~------~ia~~l~~~--~~v~~~~~~~~~~~~l~~~d~ii~g~pt 56 (169)
T 1czn_A 14 TQTIAE------SIQQEFGGE--SIVDLNDIANADASDLNAYDYLIIGCPT 56 (169)
T ss_dssp HHHHHH------HHHHHHTST--TTEEEEEGGGCCGGGGGGCSEEEEECCE
T ss_pred HHHHHH------HHHHHhCcc--cceEEEEhhhCCHhHHhhCCEEEEEecc
Confidence 457777 777777543 368888887632 1 35777777654
No 42
>2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A {Mycobacterium tuberculosis}
Probab=38.79 E-value=55 Score=22.31 Aligned_cols=56 Identities=16% Similarity=0.052 Sum_probs=37.9
Q ss_pred HHHHHHHHHhC-CCCCeEEEecCCCCCcc--cEEEEEEcCCHHHHHHHHHHHHHHHHHh
Q 033883 18 MTSVVNPTFDL-KADDVKVIPVGEKCDWT--DYMVIATGRSTWHVKNIAQAIIYKAKQR 73 (109)
Q Consensus 18 i~~i~~~l~dk-Ka~dI~vlDv~~~~~~a--DyfVI~Ta~S~rh~~ala~~i~~~lk~~ 73 (109)
++.|++-+.++ ...++.++-=.+.-... =.||.+++.-.+..-..++.+.+.+|.+
T Consensus 69 l~~I~~ea~~r~~~~~v~i~HR~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~ 127 (147)
T 2wp4_A 69 LMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQE 127 (147)
T ss_dssp HHHHHHHHHTSSTTCEEEEEEECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEEEEEcccCCCCeEEEEEEeccCHHHHHHHHHHHHHHHHhh
Confidence 44555444443 46677776655543333 3567778888888888899999999986
No 43
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=38.35 E-value=22 Score=23.72 Aligned_cols=38 Identities=11% Similarity=-0.028 Sum_probs=23.9
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCC---CC--cccEEEEEEcC
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEK---CD--WTDYMVIATGR 54 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~---~~--~aDyfVI~Ta~ 54 (109)
++.+++ .|++.+.+. .+.++|+.+. .. -.|.+||++..
T Consensus 13 T~~vA~------~ia~~l~~~---~~~~~~~~~~~~~~~l~~~d~ii~g~pt 55 (173)
T 2fcr_A 13 TTEVAD------FIGKTLGAK---ADAPIDVDDVTDPQALKDYDLLFLGAPT 55 (173)
T ss_dssp HHHHHH------HHHHHHGGG---BCCCEEGGGCSCGGGGGGCSEEEEEEEC
T ss_pred HHHHHH------HHHHHhccC---CcEEEehhhcCChhHHccCCEEEEEEee
Confidence 457777 777777654 4556666654 11 25778887765
No 44
>2omd_A Molybdopterin-converting factor subunit 2; MOAE, coenzyme biosynthesis, structural genomics, NPPSFA; 2.00A {Aquifex aeolicus}
Probab=37.88 E-value=41 Score=23.11 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=38.1
Q ss_pred HHHHHH-HHHhCCCCCeEEEecCCCC--CcccEEEEEEcCCHHHHHHHHHHHHHHHHHh
Q 033883 18 MTSVVN-PTFDLKADDVKVIPVGEKC--DWTDYMVIATGRSTWHVKNIAQAIIYKAKQR 73 (109)
Q Consensus 18 i~~i~~-~l~dkKa~dI~vlDv~~~~--~~aDyfVI~Ta~S~rh~~ala~~i~~~lk~~ 73 (109)
++.|++ +...-...++.++-=-+.- .=.=+||.+++.-.+..-..++.+.+.+|.+
T Consensus 67 l~~I~~ea~~r~~l~~v~v~HR~G~l~vGe~iv~VaVss~HR~~Af~A~~~~iD~lK~~ 125 (154)
T 2omd_A 67 MEKIRQETIEKFGVKEVFIHHRLGLVKIGEPSFLVLAVGGHREETFKACRYAVDETKKR 125 (154)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEECEEEETTSCCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEEEEEcccCCCCeEEEEEEeccCHHHHHHHHHHHHHHHHhh
Confidence 334443 4444556677776544432 2234678888888889999999999999986
No 45
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=37.57 E-value=32 Score=23.41 Aligned_cols=49 Identities=14% Similarity=-0.000 Sum_probs=33.7
Q ss_pred chHHHHhcCCCHHHHHHH-HHhCCCCCeEEEecCCCC---------------------CcccEEEEEEcCCHHHHHHH
Q 033883 7 ESETLARKRPSMTSVVNP-TFDLKADDVKVIPVGEKC---------------------DWTDYMVIATGRSTWHVKNI 62 (109)
Q Consensus 7 ~~~~l~~~~~~i~~i~~~-l~dkKa~dI~vlDv~~~~---------------------~~aDyfVI~Ta~S~rh~~al 62 (109)
.++.+++ .+++. +.+. +.++.++|+.+.. .-+|.+||+|-.=...+-+.
T Consensus 17 ~t~~la~------~i~~~~l~~~-g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~~~p~~ 87 (197)
T 2vzf_A 17 TTAKLAE------YALAHVLARS-DSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKASYTGL 87 (197)
T ss_dssp HHHHHHH------HHHHHHHHHS-SEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTTBCCHH
T ss_pred hHHHHHH------HHHHHHHHHC-CCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCCCCCHH
Confidence 3567777 78887 7765 5689999998752 14789999986544433333
No 46
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=37.54 E-value=48 Score=18.68 Aligned_cols=21 Identities=5% Similarity=0.047 Sum_probs=19.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHh
Q 033883 53 GRSTWHVKNIAQAIIYKAKQR 73 (109)
Q Consensus 53 a~S~rh~~ala~~i~~~lk~~ 73 (109)
|+|..|-++|++.|-+.+.+.
T Consensus 13 grs~eqK~~l~~~lt~~l~~~ 33 (67)
T 3m21_A 13 GPTNEQKQQLIEGVSDLMVKV 33 (67)
T ss_dssp BSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999775
No 47
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=37.49 E-value=68 Score=22.13 Aligned_cols=47 Identities=19% Similarity=0.412 Sum_probs=35.9
Q ss_pred HHHHHHHhCCCCCeEEEecCCCC---------CcccEEEEEEc----CCHHHHHHHHHHHH
Q 033883 20 SVVNPTFDLKADDVKVIPVGEKC---------DWTDYMVIATG----RSTWHVKNIAQAII 67 (109)
Q Consensus 20 ~i~~~l~dkKa~dI~vlDv~~~~---------~~aDyfVI~Ta----~S~rh~~ala~~i~ 67 (109)
.+++.+.+. +.+|.++|+.+.- ..||.+||+|- .-+.++++..|.+.
T Consensus 38 ~~~~~~~~~-g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv~ 97 (204)
T 2amj_A 38 VADGTLRDL-GHDVRIVRADSDYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVF 97 (204)
T ss_dssp HHHHHHHHT-TCEEEEEESSSCCCHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCEEEEEeCCccccHHHHHHHHHhCCEEEEECCccccCCCHHHHHHHHHHh
Confidence 777777776 7789999998632 37899999994 55667777777664
No 48
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=36.79 E-value=39 Score=25.20 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=28.5
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCC--------CcccEEEEEEcC
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKC--------DWTDYMVIATGR 54 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~--------~~aDyfVI~Ta~ 54 (109)
.+.+++ .+++.+.+. +.++.++|+.... .-+|.+||+|..
T Consensus 266 t~~lA~------~i~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~d~ii~gsp~ 313 (402)
T 1e5d_A 266 TEKMAR------VLAESFRDE-GCTVKLMWCKACHHSQIMSEISDAGAVIVGSPT 313 (402)
T ss_dssp HHHHHH------HHHHHHHHT-TCEEEEEETTTSCHHHHHHHHHTCSEEEEECCC
T ss_pred HHHHHH------HHHHHHHhC-CCeEEEEECCCCCHHHHHHHHHHCCEEEEECCc
Confidence 346666 777777654 4579999998754 346899999864
No 49
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10
Probab=36.77 E-value=26 Score=24.17 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=13.2
Q ss_pred EEEEEcCCHHHHHHHHH
Q 033883 48 MVIATGRSTWHVKNIAQ 64 (109)
Q Consensus 48 fVI~Ta~S~rh~~ala~ 64 (109)
|+||||++...++.+.+
T Consensus 39 v~i~TGR~~~~~~~~~~ 55 (231)
T 1wr8_A 39 IMLVTGNTVQFAEAASI 55 (231)
T ss_dssp EEEECSSCHHHHHHHHH
T ss_pred EEEEcCCChhHHHHHHH
Confidence 47999999888776644
No 50
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=36.24 E-value=28 Score=21.85 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=24.5
Q ss_pred cEEEEEEcCCHHHHHHHHHHHHHHHHHh
Q 033883 46 DYMVIATGRSTWHVKNIAQAIIYKAKQR 73 (109)
Q Consensus 46 DyfVI~Ta~S~rh~~ala~~i~~~lk~~ 73 (109)
+|-|.|...++.|++.+|..|.+.+++.
T Consensus 15 ~Y~l~~~~~~ee~l~~aA~~vd~~~~~i 42 (104)
T 1t3u_A 15 EYCINCPDDERANLESAARYLDGKMREI 42 (104)
T ss_dssp EEEECCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5777777788999999999999999875
No 51
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=35.40 E-value=39 Score=22.54 Aligned_cols=53 Identities=9% Similarity=0.046 Sum_probs=37.1
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCC-----------------------CCcccEEEEEEcCC----HHHHH
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEK-----------------------CDWTDYMVIATGRS----TWHVK 60 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~-----------------------~~~aDyfVI~Ta~S----~rh~~ 60 (109)
++.+++ .+++.+.+ .+.++.++|+.+. -.-+|.+||+|-.= +.+++
T Consensus 19 T~~la~------~i~~~l~~-~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk 91 (200)
T 2a5l_A 19 TAEMAR------QIARGVEQ-GGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRFGNMASPLK 91 (200)
T ss_dssp HHHHHH------HHHHHHHH-TTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECBTTBCCHHHH
T ss_pred HHHHHH------HHHHHHhh-CCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChhccCccHHHH
Confidence 567777 88888877 4568999999872 12579999998543 45666
Q ss_pred HHHHHHH
Q 033883 61 NIAQAII 67 (109)
Q Consensus 61 ala~~i~ 67 (109)
+..+.+.
T Consensus 92 ~~ld~~~ 98 (200)
T 2a5l_A 92 YFLDGTS 98 (200)
T ss_dssp HHHHTCH
T ss_pred HHHHHHH
Confidence 6655543
No 52
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=34.49 E-value=16 Score=26.22 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=13.8
Q ss_pred cEEEEEEcCCHHHHHHHH
Q 033883 46 DYMVIATGRSTWHVKNIA 63 (109)
Q Consensus 46 DyfVI~Ta~S~rh~~ala 63 (109)
-.|+|||||+...++.+.
T Consensus 39 i~vviaTGR~~~~~~~~~ 56 (282)
T 1rkq_A 39 VNVVLTTGRPYAGVHNYL 56 (282)
T ss_dssp CEEEEECSSCGGGTHHHH
T ss_pred CEEEEEcCCCHHHHHHHH
Confidence 378999999987766554
No 53
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=34.32 E-value=48 Score=17.76 Aligned_cols=22 Identities=23% Similarity=0.367 Sum_probs=19.6
Q ss_pred EcCCHHHHHHHHHHHHHHHHHh
Q 033883 52 TGRSTWHVKNIAQAIIYKAKQR 73 (109)
Q Consensus 52 Ta~S~rh~~ala~~i~~~lk~~ 73 (109)
.|+|..|-++|++.|.+.+.+.
T Consensus 12 ~g~s~e~k~~l~~~l~~~l~~~ 33 (63)
T 2x4k_A 12 EGRSDEQLKNLVSEVTDAVEKT 33 (63)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 3889999999999999999875
No 54
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Probab=34.13 E-value=1.2e+02 Score=21.09 Aligned_cols=48 Identities=4% Similarity=-0.053 Sum_probs=30.0
Q ss_pred HHHHHHHhCCCCCeEEEecCCCCC-cc----cEEEEEEcCCHHHHHHHHHHHHH
Q 033883 20 SVVNPTFDLKADDVKVIPVGEKCD-WT----DYMVIATGRSTWHVKNIAQAIIY 68 (109)
Q Consensus 20 ~i~~~l~dkKa~dI~vlDv~~~~~-~a----DyfVI~Ta~S~rh~~ala~~i~~ 68 (109)
.+++.|.++. -+|++++-+.... .. ..++.|.-++...++++.+.+.+
T Consensus 21 ~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (256)
T 2d1y_A 21 AIAQAFAREG-ALVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAY 73 (256)
T ss_dssp HHHHHHHHTT-CEEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CEEEEEeCChhHHHHHHHhhCCEEEeeCCCHHHHHHHHHHHHH
Confidence 5666776654 5788887654320 00 15677777787777777666553
No 55
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=34.11 E-value=50 Score=23.39 Aligned_cols=41 Identities=20% Similarity=0.072 Sum_probs=31.0
Q ss_pred EEEecCCCC----CcccEEEEEEc-CCHHHHHHHHHHHHHHHHHhh
Q 033883 34 KVIPVGEKC----DWTDYMVIATG-RSTWHVKNIAQAIIYKAKQRQ 74 (109)
Q Consensus 34 ~vlDv~~~~----~~aDyfVI~Ta-~S~rh~~ala~~i~~~lk~~~ 74 (109)
.++.+++.. -|.---++||| +|..+.+.-++.+.+.+++.|
T Consensus 50 li~Rl~~Pk~t~lIF~SGKiv~TGAkS~e~a~~a~~~~~~~L~~lg 95 (188)
T 2z8u_A 50 LVCRLSVPKVALLIFRSGKVNCTGAKSKEEAEIAIKKIIKELKDAG 95 (188)
T ss_dssp EEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHHHHHHhcC
Confidence 455666543 26666788885 899999999999999998864
No 56
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=34.11 E-value=71 Score=18.60 Aligned_cols=56 Identities=7% Similarity=0.042 Sum_probs=34.3
Q ss_pred CHHHHHHHHHhCCCCCeEEEecCCCCCcccEEEEEEcCCHHHHHHHHHHHHHHHHHh
Q 033883 17 SMTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQR 73 (109)
Q Consensus 17 ~i~~i~~~l~dkKa~dI~vlDv~~~~~~aDyfVI~Ta~S~rh~~ala~~i~~~lk~~ 73 (109)
.+..+..++.+. +-||.-++.......+-..+........|+..+.+.+.+...+.
T Consensus 18 ila~vt~~la~~-~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~~~~~ 73 (91)
T 1zpv_A 18 IVAGVSGKIAEL-GLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTL 73 (91)
T ss_dssp HHHHHHHHHHHT-TCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 455788888887 55787776654333333333344555568888877776655443
No 57
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*
Probab=34.04 E-value=47 Score=23.58 Aligned_cols=8 Identities=25% Similarity=-0.056 Sum_probs=7.1
Q ss_pred CEEEEccC
Q 033883 102 LCRILNSL 109 (109)
Q Consensus 102 diVVh~~~ 109 (109)
|++|||+|
T Consensus 106 d~li~~Ag 113 (302)
T 1w6u_A 106 NIVINNAA 113 (302)
T ss_dssp SEEEECCC
T ss_pred CEEEECCC
Confidence 89999986
No 58
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=33.81 E-value=48 Score=21.20 Aligned_cols=23 Identities=9% Similarity=0.198 Sum_probs=18.8
Q ss_pred ccEEEEEEcCCHHHHHHHHHHHH
Q 033883 45 TDYMVIATGRSTWHVKNIAQAII 67 (109)
Q Consensus 45 aDyfVI~Ta~S~rh~~ala~~i~ 67 (109)
+|+.||+.|.....+...++.+.
T Consensus 14 ~dv~iv~~Gs~~~~a~eA~~~L~ 36 (118)
T 3ju3_A 14 ADITFVTWGSQKGPILDVIEDLK 36 (118)
T ss_dssp CSEEEEEEGGGHHHHHHHHHHHH
T ss_pred CCEEEEEECccHHHHHHHHHHHH
Confidence 69999999999988887766543
No 59
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=33.23 E-value=18 Score=24.51 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=26.0
Q ss_pred CCCcccEEEEEEcCCHHHHHHHHHHHHHHHHHh
Q 033883 41 KCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQR 73 (109)
Q Consensus 41 ~~~~aDyfVI~Ta~S~rh~~ala~~i~~~lk~~ 73 (109)
....+|+.|.-++++...+..+...|.+.+++.
T Consensus 176 ~~~~aD~ii~~~~~~~~~~~~~~~~i~~~~~~~ 208 (211)
T 3asz_A 176 TKRYADVIVPRGGQNPVALEMLAAKALARLARM 208 (211)
T ss_dssp GGGGCSEEEESTTSCHHHHHHHHHHHTHHHHC-
T ss_pred chhcCeEEEeCCCcchHHHHHHHHHHHHHHHhh
Confidence 346799999998888888888888887777654
No 60
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=33.16 E-value=58 Score=27.22 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=29.8
Q ss_pred chHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCC--CCc--ccEEEEEEcCC
Q 033883 7 ESETLARKRPSMTSVVNPTFDLKADDVKVIPVGEK--CDW--TDYMVIATGRS 55 (109)
Q Consensus 7 ~~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~--~~~--aDyfVI~Ta~S 55 (109)
.+|.+|+ .+++.+. .+-++.++++.+. +.+ .+.+||+|.+-
T Consensus 24 ~te~~A~------~l~~~l~--~~~~~~v~~m~~~d~~~l~~~~~vl~vtsT~ 68 (688)
T 1tll_A 24 KSQAYAK------TLCEIFK--HAFDAKAMSMEEYDIVHLEHEALVLVVTSTF 68 (688)
T ss_dssp HHHHHHH------HHHHHHT--TTSEEEEEETTTSCTTSGGGCSEEEEEECCB
T ss_pred HHHHHHH------HHHHHHh--cCCCcEEeecccCChhHhccCceEEEEEccc
Confidence 3568888 8888874 5789999999874 333 57788877654
No 61
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=33.13 E-value=49 Score=18.47 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.7
Q ss_pred EEcCCHHHHHHHHHHHHHHHHHh
Q 033883 51 ATGRSTWHVKNIAQAIIYKAKQR 73 (109)
Q Consensus 51 ~Ta~S~rh~~ala~~i~~~lk~~ 73 (109)
..|+|..|-++|++.|.+.+.+.
T Consensus 8 ~~Grs~eqk~~L~~~it~~~~~~ 30 (65)
T 3ry0_A 8 LEGRSPQEVAALGEALTAAAHET 30 (65)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999875
No 62
>1j27_A Hypothetical protein TT1725; structural genomics, hypothetical protein from thermus therm HB8, MAD; 1.70A {Thermus thermophilus} SCOP: d.58.50.1
Probab=33.07 E-value=96 Score=19.80 Aligned_cols=52 Identities=8% Similarity=-0.118 Sum_probs=39.2
Q ss_pred HHHHHHHhCCCCCeEEEecCCCC--CcccEEEEEEcCCHHHHHHHHHHHHHHHHHh
Q 033883 20 SVVNPTFDLKADDVKVIPVGEKC--DWTDYMVIATGRSTWHVKNIAQAIIYKAKQR 73 (109)
Q Consensus 20 ~i~~~l~dkKa~dI~vlDv~~~~--~~aDyfVI~Ta~S~rh~~ala~~i~~~lk~~ 73 (109)
.+.+-+..+ -||.+-.+.... ..+..-|.+-++|..|+..+.+.+.+.+...
T Consensus 28 sl~~rlr~r--FnVSvAEv~~qD~~q~a~igva~Vs~~~~~~~~~l~~v~~~ie~~ 81 (102)
T 1j27_A 28 PALERLKAR--FPVSAARLYGLDAWGYEVVGFTLLGNDPAWVEETMRAAARFLAEA 81 (102)
T ss_dssp HHHHHHHHH--SSCEEEEEECTTCSSEEEEEEEEEESCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhc--CCeEEEEecCccccceEEEEEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 555545444 378888777765 4567788889999999999999999887654
No 63
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=32.72 E-value=37 Score=22.82 Aligned_cols=51 Identities=10% Similarity=0.021 Sum_probs=32.2
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCC----------------------CcccEEEEEEcCC----HHHHHH
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKC----------------------DWTDYMVIATGRS----TWHVKN 61 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~----------------------~~aDyfVI~Ta~S----~rh~~a 61 (109)
++.|++ .+++.+. .+.++.++|+.+.. .-+|.+||+|-.= +.++++
T Consensus 22 t~~la~------~i~~~l~--~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~~~~p~~lK~ 93 (193)
T 1rtt_A 22 NSAALQ------EAIGLVP--PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNYSMAGVLKN 93 (193)
T ss_dssp HHHHHH------HHHTTCC--TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETTEECHHHHH
T ss_pred HHHHHH------HHHHhcc--CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccccccCcCHHHHH
Confidence 455555 6666665 46789999998732 1368899988543 345555
Q ss_pred HHHHH
Q 033883 62 IAQAI 66 (109)
Q Consensus 62 la~~i 66 (109)
..|.+
T Consensus 94 ~iD~~ 98 (193)
T 1rtt_A 94 AIDWA 98 (193)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 54443
No 64
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}
Probab=32.48 E-value=45 Score=23.05 Aligned_cols=8 Identities=0% Similarity=-0.338 Sum_probs=7.0
Q ss_pred CEEEEccC
Q 033883 102 LCRILNSL 109 (109)
Q Consensus 102 diVVh~~~ 109 (109)
|++|||+|
T Consensus 94 d~vi~~Ag 101 (264)
T 2pd6_A 94 SVVVSCAG 101 (264)
T ss_dssp SEEEECCC
T ss_pred eEEEECCC
Confidence 88999986
No 65
>3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis}
Probab=32.37 E-value=22 Score=22.42 Aligned_cols=56 Identities=13% Similarity=0.130 Sum_probs=39.4
Q ss_pred cccEEEEEEc-CCHHHHHHHHHHHHHHHHHhhh------hhccccCCCCCcccCCCCCeEEEEc
Q 033883 44 WTDYMVIATG-RSTWHVKNIAQAIIYKAKQRQR------EVGAKQMMLPSVQGQDTGKWVIIDS 100 (109)
Q Consensus 44 ~aDyfVI~Ta-~S~rh~~ala~~i~~~lk~~~~------~~~~~~~~~~~vEG~~~~~WvllD~ 100 (109)
..+.++|... .++.++.++.+.+.+.+.+.|- +-|.+. .++.+.....|.+++++|
T Consensus 6 ~YE~~~Il~p~~~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~-LAY~I~k~~~G~Y~l~~f 68 (99)
T 3r3t_A 6 KYEIMYIIRPGVEEEAQKALVERFAGVLTNNGAEIINTKEWGKRR-LAYEINDLREGFYMILNV 68 (99)
T ss_dssp CCCCCCCCCTTSCHHHHHHHHHHHHHHHHTTTCCCCCCCCCCSCC-CCCCCCCCCCSCCCCCCC
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEeeccc-cCcCcCCCCEEEEEEEEE
Confidence 3466677766 4789999999999999988652 114332 244667777888888877
No 66
>2rcf_A Unidentified carboxysome polypeptide; cyclic pentamer, structural protein; 2.15A {Halothiobacillus neapolitanus} SCOP: b.40.15.1
Probab=32.31 E-value=65 Score=20.39 Aligned_cols=31 Identities=10% Similarity=0.052 Sum_probs=26.0
Q ss_pred CCCCCeEEEecCCCCCcccEEEEEEcCCHHHH
Q 033883 28 LKADDVKVIPVGEKCDWTDYMVIATGRSTWHV 59 (109)
Q Consensus 28 kKa~dI~vlDv~~~~~~aDyfVI~Ta~S~rh~ 59 (109)
.+++-+++.|-=+ +..-|+.++++|++.|+.
T Consensus 31 ~~g~~~VAvD~vG-AG~Ge~Vlv~~GSaAR~~ 61 (91)
T 2rcf_A 31 PGAPRQVAVDAIG-CIPGDWVLCVGSSAAREA 61 (91)
T ss_dssp TTSCCEEEEESSC-CCTTCEEEEEETTHHHHH
T ss_pred CCCCEEEEEECCC-CCCCCEEEEeCCHHHHhh
Confidence 5678899999777 678899999999887764
No 67
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=32.17 E-value=74 Score=22.34 Aligned_cols=8 Identities=13% Similarity=-0.197 Sum_probs=7.0
Q ss_pred CEEEEccC
Q 033883 102 LCRILNSL 109 (109)
Q Consensus 102 diVVh~~~ 109 (109)
|++|||+|
T Consensus 89 d~lvnnAg 96 (265)
T 3lf2_A 89 SILVNNAG 96 (265)
T ss_dssp SEEEECCC
T ss_pred CEEEECCC
Confidence 79999986
No 68
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=32.00 E-value=50 Score=24.57 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=36.0
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCC--------CcccEEEEEEcC----CHHHHHHHHHHH
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKC--------DWTDYMVIATGR----STWHVKNIAQAI 66 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~--------~~aDyfVI~Ta~----S~rh~~ala~~i 66 (109)
++.+++ .+++.+.+ .+.++.++|+.+.. .-+|.+||+|.. -+.++++..+.+
T Consensus 270 T~~la~------~i~~~l~~-~g~~v~~~~~~~~~~~~~~~~l~~~d~iiigsP~y~~~~~~~~k~~ld~l 333 (404)
T 2ohh_A 270 TRKMAH------AIAEGAMS-EGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYDEPYPSVGDLLMYL 333 (404)
T ss_dssp HHHHHH------HHHHHHHT-TTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCEETTEECTHHHHHHHHH
T ss_pred HHHHHH------HHHHHHHh-CCCeEEEEECCCCCHHHHHHHHHHCCEEEEECccccccchHHHHHHHHHh
Confidence 567777 88888876 45679999998853 247999999863 233566555544
No 69
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=31.99 E-value=24 Score=25.11 Aligned_cols=18 Identities=39% Similarity=0.457 Sum_probs=14.0
Q ss_pred EEEEEEcCCHHHHHHHHH
Q 033883 47 YMVIATGRSTWHVKNIAQ 64 (109)
Q Consensus 47 yfVI~Ta~S~rh~~ala~ 64 (109)
.|+|||||+...++.+.+
T Consensus 56 ~v~iaTGR~~~~~~~~~~ 73 (285)
T 3pgv_A 56 NFVFATGRHYIDVGQIRD 73 (285)
T ss_dssp EEEEECSSCGGGGHHHHH
T ss_pred EEEEEcCCCHHHHHHHHH
Confidence 689999999887765543
No 70
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=31.97 E-value=58 Score=22.89 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=30.1
Q ss_pred EEEecCCCC----CcccEEEEEEc-CCHHHHHHHHHHHHHHHHHhh
Q 033883 34 KVIPVGEKC----DWTDYMVIATG-RSTWHVKNIAQAIIYKAKQRQ 74 (109)
Q Consensus 34 ~vlDv~~~~----~~aDyfVI~Ta-~S~rh~~ala~~i~~~lk~~~ 74 (109)
.++.+++.. -|.---++||| +|..+++.-++.+.+.+++.|
T Consensus 46 li~Rl~~P~~t~lIF~SGKiv~TGakS~~~~~~a~~~i~~~L~~lG 91 (182)
T 1ais_A 46 IICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQKLKSIG 91 (182)
T ss_dssp EEEECSSSCCEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHHHHHHHcC
Confidence 455565543 25566678886 699999999999999998864
No 71
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=31.81 E-value=64 Score=22.50 Aligned_cols=8 Identities=13% Similarity=-0.230 Sum_probs=6.9
Q ss_pred CEEEEccC
Q 033883 102 LCRILNSL 109 (109)
Q Consensus 102 diVVh~~~ 109 (109)
|++|||+|
T Consensus 103 d~li~~Ag 110 (266)
T 3o38_A 103 DVLVNNAG 110 (266)
T ss_dssp CEEEECCC
T ss_pred cEEEECCC
Confidence 79999986
No 72
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=31.65 E-value=57 Score=24.12 Aligned_cols=27 Identities=15% Similarity=0.083 Sum_probs=22.8
Q ss_pred EEEEEc-CCHHHHHHHHHHHHHHHHHhh
Q 033883 48 MVIATG-RSTWHVKNIAQAIIYKAKQRQ 74 (109)
Q Consensus 48 fVI~Ta-~S~rh~~ala~~i~~~lk~~~ 74 (109)
=|+||| +|...++.-++.+.+.+++.+
T Consensus 120 KiV~TGaks~e~a~~A~~~i~~~L~~lg 147 (240)
T 1rm1_A 120 KMVVTGAKSEDDSKLASRKYARIIQKIG 147 (240)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHHHcC
Confidence 367887 899999999999999998864
No 73
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15
Probab=30.40 E-value=31 Score=24.13 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=13.8
Q ss_pred EEEEEEcCCHHHHHHHHH
Q 033883 47 YMVIATGRSTWHVKNIAQ 64 (109)
Q Consensus 47 yfVI~Ta~S~rh~~ala~ 64 (109)
.|+|||||+...++.+..
T Consensus 40 ~v~iaTGR~~~~~~~~~~ 57 (239)
T 1u02_A 40 DTYIVTGRSPEEISRFLP 57 (239)
T ss_dssp EEEEECSSCHHHHHHHSC
T ss_pred CEEEEeCCCHHHHHHHhc
Confidence 689999999877766543
No 74
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=30.27 E-value=54 Score=27.32 Aligned_cols=42 Identities=12% Similarity=-0.020 Sum_probs=28.0
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCC--Cc--c-cEEEEEEcCC
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKC--DW--T-DYMVIATGRS 55 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~--~~--a-DyfVI~Ta~S 55 (109)
.+.+|+ .+++.|....+.++.++|+.+.. .+ . |.+||++.+-
T Consensus 63 te~~A~------~ia~~l~~~~g~~v~v~~l~~~~~~~l~~~~~~vi~~~sT~ 109 (682)
T 2bpo_A 63 AEGFAK------AFSKELVAKFNLNVMCADVENYDFESLNDVPVIVSIFISTY 109 (682)
T ss_dssp HHHHHH------HHHHHHHHHHCCCEEEEETTSSCGGGGGGCCSEEEEEEECB
T ss_pred HHHHHH------HHHHHhHHhcCCceEEeehHHCCHHHHhhcCCeEEEEeCcc
Confidence 457888 88888873456689999988742 22 2 5566666554
No 75
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=30.13 E-value=60 Score=17.46 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=20.5
Q ss_pred EEcCCHHHHHHHHHHHHHHHHHh
Q 033883 51 ATGRSTWHVKNIAQAIIYKAKQR 73 (109)
Q Consensus 51 ~Ta~S~rh~~ala~~i~~~lk~~ 73 (109)
..|+|..|-++|++.|.+.+.+.
T Consensus 8 ~~grs~e~k~~l~~~i~~~l~~~ 30 (62)
T 1otf_A 8 IEGRTDEQKETLIRQVSEAMANS 30 (62)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999885
No 76
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Probab=30.04 E-value=87 Score=22.37 Aligned_cols=8 Identities=13% Similarity=-0.292 Sum_probs=7.1
Q ss_pred CEEEEccC
Q 033883 102 LCRILNSL 109 (109)
Q Consensus 102 diVVh~~~ 109 (109)
|++|||+|
T Consensus 113 D~lvnnAG 120 (281)
T 4dry_A 113 DLLVNNAG 120 (281)
T ss_dssp SEEEECCC
T ss_pred CEEEECCC
Confidence 89999986
No 77
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=29.60 E-value=50 Score=22.08 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=37.5
Q ss_pred chHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCC------------------------CCcccEEEEEEcC----CHHH
Q 033883 7 ESETLARKRPSMTSVVNPTFDLKADDVKVIPVGEK------------------------CDWTDYMVIATGR----STWH 58 (109)
Q Consensus 7 ~~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~------------------------~~~aDyfVI~Ta~----S~rh 58 (109)
.++.+++ .+++.+.+ .+.++.++|+.+. -.-+|.+||+|-. -+.+
T Consensus 16 ~T~~la~------~i~~~l~~-~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~aD~ii~gsP~y~~~~~~~ 88 (199)
T 2zki_A 16 SIVELAK------EIGKGAEE-AGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTLDDMRWADGFAIGSPTRYGNMAGG 88 (199)
T ss_dssp HHHHHHH------HHHHHHHH-HSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCHHHHHHCSEEEEEEECBTTBCCHH
T ss_pred HHHHHHH------HHHHHHHh-CCCEEEEEehhHhCChhhhhccCCCcccccccccHHHHHhCCEEEEECCccccCccHH
Confidence 3567777 88888877 4567999999875 0147899999854 4456
Q ss_pred HHHHHHHHH
Q 033883 59 VKNIAQAII 67 (109)
Q Consensus 59 ~~ala~~i~ 67 (109)
+++..+.+.
T Consensus 89 lk~~ld~~~ 97 (199)
T 2zki_A 89 LKTFLDTTA 97 (199)
T ss_dssp HHHHHHTTH
T ss_pred HHHHHHHhh
Confidence 666666553
No 78
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=29.55 E-value=1.5e+02 Score=20.89 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=29.2
Q ss_pred HHHHHHHhCCCCCeEEEecCCCC--------Ccc-cEEEEEEcCCHHHHHHHHHHHHH
Q 033883 20 SVVNPTFDLKADDVKVIPVGEKC--------DWT-DYMVIATGRSTWHVKNIAQAIIY 68 (109)
Q Consensus 20 ~i~~~l~dkKa~dI~vlDv~~~~--------~~a-DyfVI~Ta~S~rh~~ala~~i~~ 68 (109)
.+++.|.+..+ +|++++.+... ... -.++.|--++...++++++.+.+
T Consensus 43 ~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 99 (280)
T 3nrc_A 43 GIAKAMHREGA-ELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGK 99 (280)
T ss_dssp HHHHHHHHTTC-EEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-EEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHH
Confidence 55666666544 68888876510 011 24566777777777777766643
No 79
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=29.31 E-value=35 Score=23.78 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=14.3
Q ss_pred EEEEEEcCCHHHHHHHHH
Q 033883 47 YMVIATGRSTWHVKNIAQ 64 (109)
Q Consensus 47 yfVI~Ta~S~rh~~ala~ 64 (109)
.|+|||||+...++.+.+
T Consensus 40 ~~~iaTGR~~~~~~~~~~ 57 (279)
T 4dw8_A 40 RLVLASGRPTYGIVPLAN 57 (279)
T ss_dssp EEEEECSSCHHHHHHHHH
T ss_pred EEEEEcCCChHHHHHHHH
Confidence 689999999887765543
No 80
>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*
Probab=29.23 E-value=69 Score=21.60 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCC----CCCeEEEecCCCCCc
Q 033883 18 MTSVVNPTFDLK----ADDVKVIPVGEKCDW 44 (109)
Q Consensus 18 i~~i~~~l~dkK----a~dI~vlDv~~~~~~ 44 (109)
.+.+.+.|.+.+ ..++++||||. ..|
T Consensus 35 ~~eL~~~l~~~~~~~~~~~~~iIDVR~-~Ey 64 (169)
T 3f4a_A 35 PTELHRWMQEGHTTTLREPFQVVDVRG-SDY 64 (169)
T ss_dssp HHHHHHHHHHTSCTTTCCCEEEEECCS-TTC
T ss_pred HHHHHHHHhcCCccCcCCCEEEEECCc-hHH
Confidence 345666666543 36899999998 544
No 81
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2
Probab=29.21 E-value=39 Score=21.95 Aligned_cols=28 Identities=21% Similarity=0.126 Sum_probs=23.8
Q ss_pred EEEEEE-----cCCHHHHHHHHHHHHHHHHHhh
Q 033883 47 YMVIAT-----GRSTWHVKNIAQAIIYKAKQRQ 74 (109)
Q Consensus 47 yfVI~T-----a~S~rh~~ala~~i~~~lk~~~ 74 (109)
-|+.++ |||..|-++|++.|.+.+++..
T Consensus 59 ~fvhi~i~i~~GRs~eqK~~L~~~v~~~l~~~l 91 (125)
T 1otg_A 59 AFVHMTLKIGAGRSLESRQQAGEMLFELIKTHF 91 (125)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHHHHHHHHh
Confidence 466555 9999999999999999998863
No 82
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=29.20 E-value=1.1e+02 Score=21.20 Aligned_cols=44 Identities=9% Similarity=0.146 Sum_probs=32.2
Q ss_pred HHHHHHHhCCCCCeEEEecCCCCC--------cccEEEEEEcCCHHHHHHHHH
Q 033883 20 SVVNPTFDLKADDVKVIPVGEKCD--------WTDYMVIATGRSTWHVKNIAQ 64 (109)
Q Consensus 20 ~i~~~l~dkKa~dI~vlDv~~~~~--------~aDyfVI~Ta~S~rh~~ala~ 64 (109)
.+.+++.. ..-|++++|..+..+ .+|++||.+..+..-++++..
T Consensus 102 ~l~~~l~~-~~yD~iiiD~pp~~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~ 153 (257)
T 1wcv_1 102 ALREALRD-EGYDLVLLDAPPSLSPLTLNALAAAEGVVVPVQAEYYALEGVAG 153 (257)
T ss_dssp HHHHHCCC-TTCSEEEEECCSSCCHHHHHHHHHCSEEEEEEESSTHHHHHHHH
T ss_pred HHHHHhcc-cCCCEEEEeCCCCCCHHHHHHHHHCCeEEEEecCchHHHHHHHH
Confidence 45566655 677999999988632 579999998887766665543
No 83
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=28.69 E-value=37 Score=23.69 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=13.2
Q ss_pred EEEEEEcCCHHHHHHHH
Q 033883 47 YMVIATGRSTWHVKNIA 63 (109)
Q Consensus 47 yfVI~Ta~S~rh~~ala 63 (109)
.|++|||++...++.+.
T Consensus 40 ~~~iaTGR~~~~~~~~~ 56 (279)
T 3mpo_A 40 KVVLCTGRPLTGVQPYL 56 (279)
T ss_dssp EEEEECSSCHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHH
Confidence 78999999987765544
No 84
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa}
Probab=28.46 E-value=49 Score=22.43 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=24.3
Q ss_pred cEEEEE-----EcCCHHHHHHHHHHHHHHHHHhh
Q 033883 46 DYMVIA-----TGRSTWHVKNIAQAIIYKAKQRQ 74 (109)
Q Consensus 46 DyfVI~-----Ta~S~rh~~ala~~i~~~lk~~~ 74 (109)
+.||-+ .|||..|-++|++.|.+.+++..
T Consensus 80 ~~FVhV~i~ll~GRt~EqK~~L~e~v~~al~~~l 113 (146)
T 3e6q_A 80 RAYLHACLSILDGRDAATRQALGESLCEVLAGAV 113 (146)
T ss_dssp CCEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHE
T ss_pred ccEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHh
Confidence 456644 49999999999999999998863
No 85
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=28.43 E-value=1.3e+02 Score=19.92 Aligned_cols=53 Identities=21% Similarity=0.368 Sum_probs=36.6
Q ss_pred CHHHHHHHHHhCCCC-CeEEEecCCCCCcccEE-EEEEcCCHHHHHHHHHHHHHH
Q 033883 17 SMTSVVNPTFDLKAD-DVKVIPVGEKCDWTDYM-VIATGRSTWHVKNIAQAIIYK 69 (109)
Q Consensus 17 ~i~~i~~~l~dkKa~-dI~vlDv~~~~~~aDyf-VI~Ta~S~rh~~ala~~i~~~ 69 (109)
.+..+...+.+..|. +|.=++|.....=+-|. +.++|.|..++..|.+.+.+.
T Consensus 17 il~~~LD~I~d~GG~F~I~~f~vG~~k~d~SyA~l~V~a~d~e~L~~Il~~L~~l 71 (118)
T 3mgj_A 17 ILPKVFDKILDMGGDYKVLEFEIGKRKTDPSYAKILVIGRDERHVDEILNELRDL 71 (118)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECCSSTTSCEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCCEEEEEEecCCCCCCcceEEEEEecCCHHHHHHHHHHHHHc
Confidence 345666677776663 56667787764333333 778999999999998887654
No 86
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=28.26 E-value=1.6e+02 Score=20.74 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCCCeEEEecCCCC--Cc----------------ccEEEEEEcCCHHHHHHHHHHHHHH
Q 033883 20 SVVNPTFDLKADDVKVIPVGEKC--DW----------------TDYMVIATGRSTWHVKNIAQAIIYK 69 (109)
Q Consensus 20 ~i~~~l~dkKa~dI~vlDv~~~~--~~----------------aDyfVI~Ta~S~rh~~ala~~i~~~ 69 (109)
.+++.|.+..+ +|++++-+... .. .=.++-|.-++...++++++.+.+.
T Consensus 21 aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 87 (274)
T 3e03_A 21 AIALRAARDGA-NVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAATVDT 87 (274)
T ss_dssp HHHHHHHHTTC-EEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-EEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 56777776655 68888876532 00 1145667778888888887776543
No 87
>2vxh_A Chlorite dismutase; heme-based enzyme, oxidoreductase, chlorate respiration, molecular oxygen production; HET: HEM; 2.10A {Azospira oryzae} PDB: 3q09_A* 3q08_A* 3m2s_A* 3m2q_A*
Probab=28.23 E-value=1.8e+02 Score=21.49 Aligned_cols=50 Identities=6% Similarity=-0.044 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCCCCe-EEEecCCCCCcccEEEEEEcCCHHHHHHHHHHHHH
Q 033883 19 TSVVNPTFDLKADDV-KVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIY 68 (109)
Q Consensus 19 ~~i~~~l~dkKa~dI-~vlDv~~~~~~aDyfVI~Ta~S~rh~~ala~~i~~ 68 (109)
+++.+++++.+..-+ -..++++...=||+|+-..+.+..+++++-..+.+
T Consensus 49 ~e~~~~~~~~~~~~~~~~y~~~glr~dADlm~w~~~~~~e~lq~~~~~f~r 99 (251)
T 2vxh_A 49 EEVKKLIEKHKDNVLVDLYLTRGLETNSDFFFRINAYDLAKAQTFMREFRS 99 (251)
T ss_dssp HHHHHHHHHTTTTCEEEEEECTTTCSSCSEEEEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccceeeEEEEEeecCCccEEEEEeCCCHHHHHHHHHHHHh
Confidence 355555555444333 48899999999999999999999999988776654
No 88
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=28.15 E-value=40 Score=22.46 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=25.4
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCC--C--cccEEEEEEcC
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKC--D--WTDYMVIATGR 54 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~--~--~aDyfVI~Ta~ 54 (109)
++.+++ .|++.+.+. .+.++|+.+.. . -.|.+||++..
T Consensus 14 T~~iA~------~Ia~~l~~~---~v~i~~~~~~~~~~l~~~d~ii~g~pt 55 (175)
T 1ag9_A 14 TENIAK------MIQKQLGKD---VADVHDIAKSSKEDLEAYDILLLGIPT 55 (175)
T ss_dssp HHHHHH------HHHHHHCTT---TEEEEEGGGCCHHHHHTCSEEEEECCE
T ss_pred HHHHHH------HHHHHhccC---ceEEEEcccCChhHhhhCCEEEEEEee
Confidence 457777 777777543 67788887642 1 35888888765
No 89
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=28.08 E-value=1.9e+02 Score=21.56 Aligned_cols=49 Identities=8% Similarity=0.015 Sum_probs=31.9
Q ss_pred HHHHHHHhCCCCCeEEEecCCCCC------------------cccEEEEEEcCCHHHHHHHHHHHHHH
Q 033883 20 SVVNPTFDLKADDVKVIPVGEKCD------------------WTDYMVIATGRSTWHVKNIAQAIIYK 69 (109)
Q Consensus 20 ~i~~~l~dkKa~dI~vlDv~~~~~------------------~aDyfVI~Ta~S~rh~~ala~~i~~~ 69 (109)
.+++.|.+.. -+|++++-+.... -.-.++.|--++...++++++.+.+.
T Consensus 60 aia~~La~~G-a~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~ 126 (346)
T 3kvo_A 60 AIALKAAKDG-ANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEKAIKK 126 (346)
T ss_dssp HHHHHHHTTT-CEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5677776664 4788888765421 11245567778888888887776644
No 90
>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosyl carbohydrate-deficient glycoprotein syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP: c.108.1.10 PDB: 2fuc_A*
Probab=27.94 E-value=38 Score=23.86 Aligned_cols=13 Identities=8% Similarity=0.189 Sum_probs=10.4
Q ss_pred EEEEEEcCCHHHH
Q 033883 47 YMVIATGRSTWHV 59 (109)
Q Consensus 47 yfVI~Ta~S~rh~ 59 (109)
.|+|||||+.+.+
T Consensus 47 ~v~iaTGR~~~~~ 59 (262)
T 2fue_A 47 QIGVVGGSDYCKI 59 (262)
T ss_dssp EEEEECSSCHHHH
T ss_pred EEEEEcCCCHHHH
Confidence 6899999987653
No 91
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=27.87 E-value=70 Score=17.16 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=20.0
Q ss_pred EcCCHHHHHHHHHHHHHHHHHh
Q 033883 52 TGRSTWHVKNIAQAIIYKAKQR 73 (109)
Q Consensus 52 Ta~S~rh~~ala~~i~~~lk~~ 73 (109)
.|+|..|-++|++.|.+.+.+.
T Consensus 9 ~grs~eqk~~l~~~i~~~l~~~ 30 (61)
T 2opa_A 9 EGRTDEQKRNLVEKVTEAVKET 30 (61)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999875
No 92
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}
Probab=27.87 E-value=76 Score=22.88 Aligned_cols=20 Identities=15% Similarity=0.209 Sum_probs=12.5
Q ss_pred EEEEEcCCHHHHHHHHHHHH
Q 033883 48 MVIATGRSTWHVKNIAQAII 67 (109)
Q Consensus 48 fVI~Ta~S~rh~~ala~~i~ 67 (109)
-|++++++...+..+++.+.
T Consensus 62 ~V~~~~r~~~~~~~~~~~l~ 81 (287)
T 3rku_A 62 KLILAARRLEKLEELKKTID 81 (287)
T ss_dssp EEEEEESCHHHHHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHHHHH
Confidence 56666777766666655543
No 93
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=27.24 E-value=56 Score=21.32 Aligned_cols=36 Identities=11% Similarity=0.272 Sum_probs=23.1
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCC----CcccEEEEEEcC
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKC----DWTDYMVIATGR 54 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~----~~aDyfVI~Ta~ 54 (109)
++.+++ .|++.| +. +.++|+.+.. .-.|.+||++..
T Consensus 15 T~~~A~------~ia~~l----g~-~~~~~~~~~~~~~l~~~d~ii~g~pt 54 (164)
T 2bmv_A 15 AEAIAE------KISKAI----GN-AEVVDVAKASKEQFNSFTKVILVAPT 54 (164)
T ss_dssp HHHHHH------HHHHHH----CS-EEEEEGGGCCHHHHTTCSEEEEEEEE
T ss_pred HHHHHH------HHHHHc----CC-cEEEecccCCHhHHhhCCEEEEEECC
Confidence 456676 666666 33 7788887532 125788888765
No 94
>3r8n_F 30S ribosomal protein S6; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_F 3fih_F* 3iy8_F 3j18_F* 2wwl_F 3oar_F 3oaq_F 3ofb_F 3ofa_F 3ofp_F 3ofx_F 3ofy_F 3ofo_F 3r8o_F 4a2i_F 4gd1_F 4gd2_F 2gy9_F 2gyb_F
Probab=26.72 E-value=35 Score=21.47 Aligned_cols=54 Identities=7% Similarity=0.189 Sum_probs=37.8
Q ss_pred cEEEEEEcCCHHHHHHHHHHHHHHHHHhhh------hhccccCCCCCcccCCCCCeEEEEc
Q 033883 46 DYMVIATGRSTWHVKNIAQAIIYKAKQRQR------EVGAKQMMLPSVQGQDTGKWVIIDS 100 (109)
Q Consensus 46 DyfVI~Ta~S~rh~~ala~~i~~~lk~~~~------~~~~~~~~~~~vEG~~~~~WvllD~ 100 (109)
+.++|.....+.++.++.+.+.+.+.+.|- +-|.+. ..+.+.....|.+++++|
T Consensus 5 E~~~Il~p~~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~-LAY~I~k~~~G~Y~l~~f 64 (100)
T 3r8n_F 5 EIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQ-LAYPINKLHKAHYVLMNV 64 (100)
T ss_dssp CCCCEECGGGTTHHHHHHHHHHHHHHTTTCBCCCCEEEEEEC-CSSCTTSCSCEEEEECCE
T ss_pred EEEEEECCCchHHHHHHHHHHHHHHHHCCCEEEEEEeeeccc-CCeEcCCCCEEEEEEEEE
Confidence 456666665457999999999999988652 124432 344677777888888876
No 95
>1wgo_A VPS10 domain-containing receptor sorcs2; polycystic kidney disease, PKD, structural genomics, KIAA1329 protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=26.70 E-value=37 Score=22.87 Aligned_cols=17 Identities=24% Similarity=0.102 Sum_probs=14.2
Q ss_pred CcccCCCCCeEEEEcCC
Q 033883 86 SVQGQDTGKWVIIDSGL 102 (109)
Q Consensus 86 ~vEG~~~~~WvllD~Gd 102 (109)
..||.-..-|+-+||||
T Consensus 54 leeGd~~~T~~qvDfGD 70 (123)
T 1wgo_A 54 QEQGDVLTTKYQVDLGD 70 (123)
T ss_dssp ESSCCSCSCEEEEECSS
T ss_pred EecCCccceEEEEEcCC
Confidence 34777778999999998
No 96
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=26.62 E-value=24 Score=25.05 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=12.7
Q ss_pred EEEEEEcCCHHHHHHH
Q 033883 47 YMVIATGRSTWHVKNI 62 (109)
Q Consensus 47 yfVI~Ta~S~rh~~al 62 (109)
.|+|||||+...++.+
T Consensus 57 ~v~iaTGR~~~~~~~~ 72 (283)
T 3dao_A 57 IFVVCSGRQFSSEFKL 72 (283)
T ss_dssp EEEEECSSCHHHHHHH
T ss_pred EEEEEcCCCHHHHHHH
Confidence 5889999998877654
No 97
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=26.43 E-value=1e+02 Score=20.30 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=20.8
Q ss_pred hHHHHhcCCCHHHHHHHHHhCC-CCCeEEEecCCC
Q 033883 8 SETLARKRPSMTSVVNPTFDLK-ADDVKVIPVGEK 41 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkK-a~dI~vlDv~~~ 41 (109)
+..|++ .+++.+.+.. +.+|.++|+.+.
T Consensus 18 t~~la~------~~~~~l~~~g~~~~v~~~dl~~~ 46 (201)
T 1t5b_A 18 SGQLTD------YFIEQWREKHVADEITVRDLAAN 46 (201)
T ss_dssp HHHHHH------HHHHHHHHHCTTCEEEEEETTTS
T ss_pred HHHHHH------HHHHHHHHhCCCCeEEEEeccCC
Confidence 566666 8888887764 467999999864
No 98
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=26.19 E-value=1.7e+02 Score=21.00 Aligned_cols=49 Identities=10% Similarity=-0.020 Sum_probs=28.7
Q ss_pred HHHHHHHhCCCCCeEEEecCCCCC------c-----cc-EEEEEEcCCHHHHHHHHHHHHHH
Q 033883 20 SVVNPTFDLKADDVKVIPVGEKCD------W-----TD-YMVIATGRSTWHVKNIAQAIIYK 69 (109)
Q Consensus 20 ~i~~~l~dkKa~dI~vlDv~~~~~------~-----aD-yfVI~Ta~S~rh~~ala~~i~~~ 69 (109)
.+++.|.+..+ +|++++-+.... + .. .++.|--++...++++.+.+.+.
T Consensus 56 aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 116 (293)
T 3rih_A 56 GIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDA 116 (293)
T ss_dssp HHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 56666766654 688777554210 0 11 34556677777777776666543
No 99
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=25.90 E-value=54 Score=24.35 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=28.5
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCC--------CcccEEEEEEcC
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKC--------DWTDYMVIATGR 54 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~--------~~aDyfVI~Ta~ 54 (109)
++.+++ .+++.+.+. +.++.++|+.... .-+|.+||+|..
T Consensus 265 T~~lA~------~ia~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~d~ii~g~p~ 312 (398)
T 1ycg_A 265 TEKMAH------ALMDGLVAG-GCEVKLFKLSVSDRNDVIKEILDARAVLVGSPT 312 (398)
T ss_dssp HHHHHH------HHHHHHHHT-TCEEEEEEGGGSCHHHHHHHHHHCSEEEEECCC
T ss_pred HHHHHH------HHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHCCEEEEECCc
Confidence 456666 777777654 4579999998754 246999999853
No 100
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=25.78 E-value=36 Score=23.89 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=13.4
Q ss_pred EEEEEEcCCHHHHHHHHH
Q 033883 47 YMVIATGRSTWHVKNIAQ 64 (109)
Q Consensus 47 yfVI~Ta~S~rh~~ala~ 64 (109)
.|+||||++...++.+.+
T Consensus 41 ~~~iaTGR~~~~~~~~~~ 58 (290)
T 3dnp_A 41 YVTLVTNRHFRSAQKIAK 58 (290)
T ss_dssp EEEEBCSSCHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHH
Confidence 478899999887765543
No 101
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=25.61 E-value=60 Score=24.38 Aligned_cols=43 Identities=5% Similarity=-0.016 Sum_probs=31.4
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCC--------CcccEEEEEEcCCHH
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKC--------DWTDYMVIATGRSTW 57 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~--------~~aDyfVI~Ta~S~r 57 (109)
++.+++ .+++.+.+. +.++.++|+.+.. .-+|.+||+|..=.-
T Consensus 270 T~~la~------~i~~~l~~~-g~~v~~~~l~~~~~~~~~~~l~~~D~iiigsP~y~~ 320 (414)
T 2q9u_A 270 THRMAL------ALLDGARST-GCETVLLEMTSSDITKVALHTYDSGAVAFASPTLNN 320 (414)
T ss_dssp HHHHHH------HHHHHHHHT-TCEEEEEEGGGCCHHHHHHHHHTCSEEEEECCCBTT
T ss_pred HHHHHH------HHHHHHHhC-CCeEEEEEcCcCCHHHHHHHHHhCCEEEEEcCccCc
Confidence 567777 888888764 4579999998753 146999999865443
No 102
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=25.58 E-value=1.2e+02 Score=21.81 Aligned_cols=52 Identities=21% Similarity=0.052 Sum_probs=34.5
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCCC-------------------cccEEEEEEcCC----HHHHHHHHH
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKCD-------------------WTDYMVIATGRS----TWHVKNIAQ 64 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~~-------------------~aDyfVI~Ta~S----~rh~~ala~ 64 (109)
+..|++ .+++.+.+ .+-++.++|+.+..- -||.+||+|-.= +.++++..|
T Consensus 50 t~~La~------~~~~~l~~-~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD 122 (247)
T 2q62_A 50 SRLLAE------EARRLLEF-FGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAMTGIMKAQID 122 (247)
T ss_dssp HHHHHH------HHHHHHHH-TTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSSSSCCHHHHHHHH
T ss_pred HHHHHH------HHHHHHhh-CCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCCCCccHHHHHHHH
Confidence 455666 77777765 456899999988531 368899988554 445555444
Q ss_pred HH
Q 033883 65 AI 66 (109)
Q Consensus 65 ~i 66 (109)
.+
T Consensus 123 ~l 124 (247)
T 2q62_A 123 WI 124 (247)
T ss_dssp TS
T ss_pred Hh
Confidence 43
No 103
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=25.45 E-value=1.4e+02 Score=20.67 Aligned_cols=8 Identities=0% Similarity=-0.313 Sum_probs=6.8
Q ss_pred CEEEEccC
Q 033883 102 LCRILNSL 109 (109)
Q Consensus 102 diVVh~~~ 109 (109)
|++|||+|
T Consensus 89 D~lvnnAg 96 (250)
T 3nyw_A 89 DILVNAAA 96 (250)
T ss_dssp EEEEECCC
T ss_pred CEEEECCC
Confidence 68999986
No 104
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=24.29 E-value=1.9e+02 Score=20.33 Aligned_cols=49 Identities=18% Similarity=0.136 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCCCeEEEecCCCCCc-ccEEEEEEcCCHHHHHHHHHHHHHH
Q 033883 20 SVVNPTFDLKADDVKVIPVGEKCDW-TDYMVIATGRSTWHVKNIAQAIIYK 69 (109)
Q Consensus 20 ~i~~~l~dkKa~dI~vlDv~~~~~~-aDyfVI~Ta~S~rh~~ala~~i~~~ 69 (109)
.+++.|.+. |-+|++++.+..... .-.++-|--++...++++.+.+.+.
T Consensus 29 aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 78 (269)
T 3vtz_A 29 AVVDALVRY-GAKVVSVSLDEKSDVNVSDHFKIDVTNEEEVKEAVEKTTKK 78 (269)
T ss_dssp HHHHHHHHT-TCEEEEEESCC--CTTSSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCEEEEEeCCchhccCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 566666665 456999887765321 2234567788888888887776543
No 105
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=23.99 E-value=36 Score=23.56 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=12.6
Q ss_pred EEEEEcCCHHHHHHHHH
Q 033883 48 MVIATGRSTWHVKNIAQ 64 (109)
Q Consensus 48 fVI~Ta~S~rh~~ala~ 64 (109)
|++||||+...+..+.+
T Consensus 39 ~~~aTGR~~~~~~~~~~ 55 (258)
T 2pq0_A 39 VAIATGRAPFMFEHVRK 55 (258)
T ss_dssp EEEECSSCGGGSHHHHH
T ss_pred EEEECCCChHHHHHHHH
Confidence 77899998876665543
No 106
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=23.98 E-value=32 Score=24.03 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=12.7
Q ss_pred EEEEEEcCCHHHHHHHHHH
Q 033883 47 YMVIATGRSTWHVKNIAQA 65 (109)
Q Consensus 47 yfVI~Ta~S~rh~~ala~~ 65 (109)
.+++||++|.|....++..
T Consensus 39 ~vvl~Tn~~gr~~~~~~~~ 57 (264)
T 3epr_A 39 PYMLVTNNTTRTPESVQEM 57 (264)
T ss_dssp CEEEEECCCSSCHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHH
Confidence 4789997766666555443
No 107
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=23.67 E-value=1.9e+02 Score=20.18 Aligned_cols=49 Identities=14% Similarity=-0.089 Sum_probs=30.8
Q ss_pred HHHHHHHhCCCCCeEEEecCCCCC--cccEEEEEEcCCHHHHHHHHHHHHHH
Q 033883 20 SVVNPTFDLKADDVKVIPVGEKCD--WTDYMVIATGRSTWHVKNIAQAIIYK 69 (109)
Q Consensus 20 ~i~~~l~dkKa~dI~vlDv~~~~~--~aDyfVI~Ta~S~rh~~ala~~i~~~ 69 (109)
.+++.|.+. |-+|++++-+.... ..=.++-|.-.+...++++.+.+.+.
T Consensus 43 aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 93 (260)
T 3un1_A 43 GLVRAYRDR-NYRVVATSRSIKPSADPDIHTVAGDISKPETADRIVREGIER 93 (260)
T ss_dssp HHHHHHHHT-TCEEEEEESSCCCCSSTTEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCEEEEEeCChhhcccCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 566666666 45788888765421 12245566777777888777666543
No 108
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=23.35 E-value=24 Score=26.91 Aligned_cols=48 Identities=25% Similarity=0.414 Sum_probs=27.6
Q ss_pred cEEEEEEcCCHHHHHHH--HHHHHHHHHHhhhhhccccCCCCCcccCCCCCeEEEEc
Q 033883 46 DYMVIATGRSTWHVKNI--AQAIIYKAKQRQREVGAKQMMLPSVQGQDTGKWVIIDS 100 (109)
Q Consensus 46 DyfVI~Ta~S~rh~~al--a~~i~~~lk~~~~~~~~~~~~~~~vEG~~~~~WvllD~ 100 (109)
...||+=|+|..|=-++ |..|.+.|.+.++ .. .+..+ .++|.|.+.|-
T Consensus 12 ~v~vl~GG~S~E~~vS~~sa~~v~~~l~~~~~----~v-~~i~i--~~~g~w~~~~~ 61 (373)
T 3lwb_A 12 RVAVVFGGRSNEHAISCVSAGSILRNLDSRRF----DV-IAVGI--TPAGSWVLTDA 61 (373)
T ss_dssp EEEEEEEC-----CHHHHHHHHHHHHSCTTTE----EE-EEEEE--CTTCCEEEECC
T ss_pred EEEEEecCCCCChhhHHHHHHHHHHHhhhcCc----eE-EEEEe--cCCCCeEecCc
Confidence 46899999999998777 6778888865543 11 12233 25678987653
No 109
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F 1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F 2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F* 2vho_F ...
Probab=23.08 E-value=71 Score=21.40 Aligned_cols=55 Identities=7% Similarity=0.174 Sum_probs=40.0
Q ss_pred ccEEEEEEcCCHHHHHHHHHHHHHHHHHhhh------hhccccCCCCCcccCCCCCeEEEEc
Q 033883 45 TDYMVIATGRSTWHVKNIAQAIIYKAKQRQR------EVGAKQMMLPSVQGQDTGKWVIIDS 100 (109)
Q Consensus 45 aDyfVI~Ta~S~rh~~ala~~i~~~lk~~~~------~~~~~~~~~~~vEG~~~~~WvllD~ 100 (109)
.+.++|.......++.++.+.+...+.+.|- +-|.+. ..+.+.....|.+++++|
T Consensus 4 YE~~~Il~P~~~e~v~~~ve~~~~~I~~~GG~I~~ve~wG~R~-LAY~I~K~~~G~Y~l~~f 64 (135)
T 3i1m_F 4 YEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQ-LAYPINKLHKAHYVLMNV 64 (135)
T ss_dssp ECBEEEECSTTTTSHHHHHHHHHHHHHHTTCEECCCEEEEEEC-CSSCTTSSSCEEEEECCE
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHHHCCCEEEEEEeecccc-CceEcCCCCeEEEEEEEE
Confidence 3567777776558999999999999988752 124432 345677778889999887
No 110
>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, H superfamily, jaecken disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB: 2q4r_A
Probab=23.06 E-value=43 Score=23.15 Aligned_cols=11 Identities=9% Similarity=-0.009 Sum_probs=9.2
Q ss_pred EEEEEEcCCHH
Q 033883 47 YMVIATGRSTW 57 (109)
Q Consensus 47 yfVI~Ta~S~r 57 (109)
.|+|||||+.+
T Consensus 40 ~v~iaTGR~~~ 50 (246)
T 2amy_A 40 KIGVVGGSDFE 50 (246)
T ss_dssp EEEEECSSCHH
T ss_pred eEEEEcCCCHH
Confidence 68999999864
No 111
>3i96_A Ethanolamine utilization protein EUTS; structural protein; HET: NHE; 1.65A {Escherichia coli} PDB: 3ia0_A
Probab=22.98 E-value=1.7e+02 Score=19.36 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=32.7
Q ss_pred hCCCCCeEEEecCCCCCcccEEEEEEcCCHHHHHHHHHHHHHHHHHh
Q 033883 27 DLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQR 73 (109)
Q Consensus 27 dkKa~dI~vlDv~~~~~~aDyfVI~Ta~S~rh~~ala~~i~~~lk~~ 73 (109)
--|+-||.++.+...++ ++|.+| +..-+++-.+...+.+++.
T Consensus 59 a~KAA~Vel~~~~~~~G----~vii~G-dVsaV~aAvea~~~~~~~~ 100 (119)
T 3i96_A 59 ALKAADVHIGFLDRFSG----ALVIYG-SVGAVEEALSQTVSGLGRL 100 (119)
T ss_dssp HHHHSSEEEEEECTTTC----EEEEEE-CHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcCcEEEEEEeccc----EEEEEE-CHHHHHHHHHHHHHHHhhc
Confidence 45788999999888765 688888 6777887778777777664
No 112
>1osc_A Similar to divalent cation tolerant protein CUTA; copper resistance, structural proteomics in europe, spine, structural genomics; 2.15A {Rattus norvegicus} SCOP: d.58.5.2
Probab=22.88 E-value=87 Score=20.83 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=18.6
Q ss_pred EEEEEEcCCHHHHHHHHHHHHH
Q 033883 47 YMVIATGRSTWHVKNIAQAIIY 68 (109)
Q Consensus 47 yfVI~Ta~S~rh~~ala~~i~~ 68 (109)
.+|.+|..|..+.+.||+.+.+
T Consensus 24 ~~V~tT~p~~e~A~~iA~~Lve 45 (126)
T 1osc_A 24 SAAFVTCPNEKVAKEIARAVVE 45 (126)
T ss_dssp EEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHH
Confidence 4888999999999999887753
No 113
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=22.71 E-value=1.5e+02 Score=19.78 Aligned_cols=54 Identities=17% Similarity=0.078 Sum_probs=35.2
Q ss_pred HHHHHHHhC---CCCCeEE--EecCCCCCc------cc--EEEE---EEcCCHHHHHHHHHHHHHHHHHh
Q 033883 20 SVVNPTFDL---KADDVKV--IPVGEKCDW------TD--YMVI---ATGRSTWHVKNIAQAIIYKAKQR 73 (109)
Q Consensus 20 ~i~~~l~dk---Ka~dI~v--lDv~~~~~~------aD--yfVI---~Ta~S~rh~~ala~~i~~~lk~~ 73 (109)
.|.+++.+. ...+|.+ -++..-+.| +| -||- -.|||..|-++++..|.+.+.+.
T Consensus 23 ~It~a~~e~~~vP~~~v~Vif~e~~~~~~~~gG~~rsd~~v~I~i~~~~GRt~eqK~~L~~~I~~~l~~~ 92 (149)
T 3mf7_A 23 AITDAHRGLTGTQHFLAQVNFQEQPAGNVFLGGVQQGGDTIFVHGLHREGRSADLKGQLAQRIVDDVSVA 92 (149)
T ss_dssp HHHHHHHHTCCTTCCCCEEEEEEECTTCCEETTEECCSCCEEEEEEEESCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcChHHEEEEEEEcCccceEECCEEcCCCEEEEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 677777654 4455544 455443322 23 2232 34899999999999999999875
No 114
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=22.45 E-value=65 Score=19.98 Aligned_cols=21 Identities=5% Similarity=0.067 Sum_probs=18.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHh
Q 033883 53 GRSTWHVKNIAQAIIYKAKQR 73 (109)
Q Consensus 53 a~S~rh~~ala~~i~~~lk~~ 73 (109)
|++..|-++++..|-+.+.+.
T Consensus 67 g~t~eqk~~l~~~i~~~l~~~ 87 (115)
T 2xcz_A 67 ALDGSRTQEVSELVCGHIEQN 87 (115)
T ss_dssp CCCTTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999775
No 115
>3nn1_A Chlorite dismutase; ferredoxin like fold, chlorite dismutation, periplasmatic, oxidoreductase; HET: HEM; 1.85A {Candidatus nitrospira defluvii} PDB: 3nn2_A* 3nn4_A* 3nn3_A*
Probab=22.26 E-value=2.4e+02 Score=20.72 Aligned_cols=49 Identities=14% Similarity=0.024 Sum_probs=37.8
Q ss_pred HHHHHHHhC-CCCCeEEEecCCCCCcccEEEEEEcCCHHHHHHHHHHHHH
Q 033883 20 SVVNPTFDL-KADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIY 68 (109)
Q Consensus 20 ~i~~~l~dk-Ka~dI~vlDv~~~~~~aDyfVI~Ta~S~rh~~ala~~i~~ 68 (109)
++.+++++. ...-.-+.||.+...=||+|+.-.+.+...++++-..+.+
T Consensus 42 e~~~~l~~~~~~~~~~~Y~v~G~radaDlm~w~~~~~~~~lq~~~~~f~~ 91 (241)
T 3nn1_A 42 EVKGLVEQWSGKILVESYLLRGLSDHADLMFRVHARTLSDTQQFLSAFMG 91 (241)
T ss_dssp HHHHHHHHHTTTCEEEEEECTTTSTTCCEEEEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccceEEEEEEeecccCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 555555442 2345778899998888999999999999999998777754
No 116
>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}
Probab=22.23 E-value=1.6e+02 Score=18.71 Aligned_cols=51 Identities=10% Similarity=0.060 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCCCeEEEecCCCCCcccEEEEEEcCCHHHHHHHHHHHHHHHHH
Q 033883 18 MTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQ 72 (109)
Q Consensus 18 i~~i~~~l~dkKa~dI~vlDv~~~~~~aDyfVI~Ta~S~rh~~ala~~i~~~lk~ 72 (109)
+..+++.|.+.-...-.+.-+.+ -.|.|+....+...+..+++.|.+.+.+
T Consensus 66 L~~ia~~L~~~~~~~~~~~R~~~----d~F~ill~~~~~~~~~~~~~~i~~~~~~ 116 (177)
T 3ign_A 66 IRHTADVTRNNIRQSDSAGRYGG----EEFGIILPETDAESARVICERIREAIEK 116 (177)
T ss_dssp HHHHHHHHHTTSCTTSEEEECSS----SEEEEEEETCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCEEEEecC----CeEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 34788888775544433444433 4566788888899999999999888865
No 117
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=22.11 E-value=85 Score=19.18 Aligned_cols=21 Identities=5% Similarity=-0.167 Sum_probs=13.9
Q ss_pred HHHHHHHhCCCCCeEEEecCCCC
Q 033883 20 SVVNPTFDLKADDVKVIPVGEKC 42 (109)
Q Consensus 20 ~i~~~l~dkKa~dI~vlDv~~~~ 42 (109)
.+.+.+.+ ..++++||||+..
T Consensus 7 el~~~l~~--~~~~~liDvR~~~ 27 (127)
T 3i2v_A 7 DYKRLLDS--GAFHLLLDVRPQV 27 (127)
T ss_dssp HHHHHHHH--TCCCEEEECSCHH
T ss_pred HHHHHHhC--CCCeEEEECCCHH
Confidence 44445543 3479999999754
No 118
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Probab=22.10 E-value=31 Score=22.90 Aligned_cols=9 Identities=0% Similarity=-0.411 Sum_probs=7.0
Q ss_pred CCEEEEccC
Q 033883 101 GLCRILNSL 109 (109)
Q Consensus 101 GdiVVh~~~ 109 (109)
+||+|||+|
T Consensus 98 ~dVLVnnAg 106 (157)
T 3gxh_A 98 KDVLVHCLA 106 (157)
T ss_dssp SCEEEECSB
T ss_pred CCEEEECCC
Confidence 378899975
No 119
>1o5j_A Periplasmic divalent cation tolerance protein; TM1056, struc genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.5.2
Probab=21.91 E-value=96 Score=20.24 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=18.5
Q ss_pred EEEEEEcCCHHHHHHHHHHHHH
Q 033883 47 YMVIATGRSTWHVKNIAQAIIY 68 (109)
Q Consensus 47 yfVI~Ta~S~rh~~ala~~i~~ 68 (109)
.+|.+|..|....+.||+.+.+
T Consensus 14 ~lV~tT~p~~e~A~~iA~~Lve 35 (113)
T 1o5j_A 14 ILVYSTFPNEEKALEIGRKLLE 35 (113)
T ss_dssp EEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHh
Confidence 5789999999999999887653
No 120
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=21.38 E-value=1.2e+02 Score=20.66 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=32.3
Q ss_pred HHHHHHHhCCCCCeEEEecCCCC-----------------------------CcccEEEEEEc----CCHHHHHHHHHHH
Q 033883 20 SVVNPTFDLKADDVKVIPVGEKC-----------------------------DWTDYMVIATG----RSTWHVKNIAQAI 66 (109)
Q Consensus 20 ~i~~~l~dkKa~dI~vlDv~~~~-----------------------------~~aDyfVI~Ta----~S~rh~~ala~~i 66 (109)
.+++.+ ..+.+|.++|+.+.. ..+|.+||+|- .-+.++++..|.+
T Consensus 22 ~~~~~~--~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v 99 (196)
T 3lcm_A 22 QVQTNL--SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIFIFPIWWSGMPAILKGFIDRV 99 (196)
T ss_dssp HHHHHS--CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHH
T ss_pred HHHHHh--cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEEECchhhccccHHHHHHHHHH
Confidence 666666 567889999998642 13899999985 5566777666655
No 121
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=21.32 E-value=1.2e+02 Score=21.14 Aligned_cols=53 Identities=11% Similarity=0.057 Sum_probs=36.9
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCC--------------------------------CcccEEEEEEc--
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKC--------------------------------DWTDYMVIATG-- 53 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~--------------------------------~~aDyfVI~Ta-- 53 (109)
+..|++ .+++.+.+..+.+|.++|+.+.. .-+|.+||+|-
T Consensus 17 T~~la~------~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y 90 (242)
T 1sqs_A 17 TLEYTK------RLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVY 90 (242)
T ss_dssp HHHHHH------HHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEEC
T ss_pred HHHHHH------HHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEcccc
Confidence 566777 77888876536689999998641 24688999985
Q ss_pred --CCHHHHHHHHHHH
Q 033883 54 --RSTWHVKNIAQAI 66 (109)
Q Consensus 54 --~S~rh~~ala~~i 66 (109)
.-+.++++..|.+
T Consensus 91 ~~~~p~~lK~~iDr~ 105 (242)
T 1sqs_A 91 LQNVSVDTKNFIERI 105 (242)
T ss_dssp SSSCCHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHH
Confidence 4456677666655
No 122
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=21.25 E-value=1.3e+02 Score=17.29 Aligned_cols=22 Identities=9% Similarity=-0.016 Sum_probs=19.9
Q ss_pred EcC-CHHHHHHHHHHHHHHHHHh
Q 033883 52 TGR-STWHVKNIAQAIIYKAKQR 73 (109)
Q Consensus 52 Ta~-S~rh~~ala~~i~~~lk~~ 73 (109)
.|+ |..|-++|++.|.+.+.+.
T Consensus 9 ~Grls~eqk~~L~~~l~~~l~~~ 31 (76)
T 1gyx_A 9 PRELDEQQKAALAADITDVIIRH 31 (76)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 488 9999999999999999875
No 123
>1uku_A CUTA1, periplasmic divalent cation tolerance protein CUT; copper tolerance, structural genomics, metal binding P; 1.45A {Pyrococcus horikoshii} SCOP: d.58.5.2 PDB: 1umj_A 1v99_A* 1v9b_A 1j2v_A 2e66_A
Probab=20.99 E-value=1.1e+02 Score=19.53 Aligned_cols=22 Identities=9% Similarity=0.077 Sum_probs=18.5
Q ss_pred EEEEEEcCCHHHHHHHHHHHHH
Q 033883 47 YMVIATGRSTWHVKNIAQAIIY 68 (109)
Q Consensus 47 yfVI~Ta~S~rh~~ala~~i~~ 68 (109)
.+|.+|..|....+.||+.+.+
T Consensus 2 ~~V~~T~p~~~~A~~ia~~Lve 23 (102)
T 1uku_A 2 IIVYTTFPDWESAEKVVKTLLK 23 (102)
T ss_dssp EEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHH
Confidence 4799999999999999887753
No 124
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=20.93 E-value=89 Score=19.51 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCCCeEEEecCCCCCc
Q 033883 18 MTSVVNPTFDLKADDVKVIPVGEKCDW 44 (109)
Q Consensus 18 i~~i~~~l~dkKa~dI~vlDv~~~~~~ 44 (109)
.+.+.+.+.+. -.++++||||+...|
T Consensus 19 ~~el~~~l~~~-~~~~~liDvR~~~e~ 44 (124)
T 3flh_A 19 HHTVLADMQNA-TGKYVVLDVRNAPAQ 44 (124)
T ss_dssp HHHHHHHHHHT-CCCEEEEECCCSCHH
T ss_pred HHHHHHHHHcC-CCCEEEEECCCHHHH
Confidence 34455555443 246999999997654
No 125
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=20.77 E-value=1.2e+02 Score=16.69 Aligned_cols=22 Identities=5% Similarity=-0.029 Sum_probs=20.1
Q ss_pred EcCCHHHHHHHHHHHHHHHHHh
Q 033883 52 TGRSTWHVKNIAQAIIYKAKQR 73 (109)
Q Consensus 52 Ta~S~rh~~ala~~i~~~lk~~ 73 (109)
.|+|..|-++|++.|-+.+.+.
T Consensus 8 ~grt~eqK~~L~~~it~~~~~~ 29 (62)
T 3m20_A 8 PKLDVGKKREFVERLTSVAAEI 29 (62)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999775
No 126
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=20.76 E-value=55 Score=19.35 Aligned_cols=11 Identities=27% Similarity=0.169 Sum_probs=8.5
Q ss_pred CeEEEecCCCC
Q 033883 32 DVKVIPVGEKC 42 (109)
Q Consensus 32 dI~vlDv~~~~ 42 (109)
++++||||+..
T Consensus 16 ~~~liDvR~~~ 26 (94)
T 1wv9_A 16 GVLVVDVRPAD 26 (94)
T ss_dssp TCEEEECCCC-
T ss_pred CCEEEECCCHH
Confidence 68899999865
No 127
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=20.72 E-value=1.8e+02 Score=20.49 Aligned_cols=37 Identities=8% Similarity=-0.048 Sum_probs=28.4
Q ss_pred CCCCeEEEecCCCC-----------CcccEEEEEEcCCHHHHHHHHHH
Q 033883 29 KADDVKVIPVGEKC-----------DWTDYMVIATGRSTWHVKNIAQA 65 (109)
Q Consensus 29 Ka~dI~vlDv~~~~-----------~~aDyfVI~Ta~S~rh~~ala~~ 65 (109)
+.-|++++|..+.. ..+|++||.+-.+..-+.++...
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~ 164 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNI 164 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHH
T ss_pred cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHH
Confidence 35699999997631 25999999999888887776543
No 128
>3hlu_A Uncharacterized protein DUF2179; alpha-beta half sandwich, structural genomics, PSI-2, protei structure initiative; 2.65A {Eubacterium ventriosum}
Probab=20.71 E-value=1.6e+02 Score=18.16 Aligned_cols=51 Identities=6% Similarity=-0.035 Sum_probs=37.2
Q ss_pred CHHHHHHHHHhCCCCCeEEEecCCCCCcccEEEEEEcCCHHHHHHHHHHHH
Q 033883 17 SMTSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAII 67 (109)
Q Consensus 17 ~i~~i~~~l~dkKa~dI~vlDv~~~~~~aDyfVI~Ta~S~rh~~ala~~i~ 67 (109)
..+.+++.+.+.-+.-+.+++-.+-=+=-+.-||-+.-+.+++..|-+.|.
T Consensus 17 ~~eeI~~~I~~~l~rGvT~~~g~G~Ys~~~~~vl~~Vv~r~e~~~l~~~I~ 67 (96)
T 3hlu_A 17 KRKIIADRMLQELDLGVTMLQAVGAYKNNETEVIMCVMRKATLVKVRNLLK 67 (96)
T ss_dssp THHHHHHHHHHHSCCCCEEEECEESSSSSCCEEEEEEECHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEEEEEcccCCCEEEEEEEecHHHHHHHHHHHH
Confidence 345677777777788899999887533346777778888999888766554
No 129
>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}
Probab=20.70 E-value=1.7e+02 Score=18.50 Aligned_cols=50 Identities=8% Similarity=0.201 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCCCCeEEEecCCCCCcccEEEEEEcCCHHHHHHHHHHHHHHHHH
Q 033883 19 TSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQ 72 (109)
Q Consensus 19 ~~i~~~l~dkKa~dI~vlDv~~~~~~aDyfVI~Ta~S~rh~~ala~~i~~~lk~ 72 (109)
..+++.|.+.-..+-.+.-+.+ -.|.|+....+...+..+++.+.+.+.+
T Consensus 72 ~~~a~~L~~~~~~~~~~~R~~~----d~F~ill~~~~~~~~~~~~~~i~~~~~~ 121 (177)
T 3hva_A 72 GQLAGLMREQFGEEADLARFGD----SIFAALFKGKTPEQAQAALQRLLKKVEN 121 (177)
T ss_dssp HHHHHHHHHHHGGGCEEEECSS----SEEEEEEETCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCceEEEecC----CeEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 3666666554333333444433 4677788888999999999999988875
No 130
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=20.58 E-value=77 Score=19.52 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=10.0
Q ss_pred CCCeEEEecCCCC
Q 033883 30 ADDVKVIPVGEKC 42 (109)
Q Consensus 30 a~dI~vlDv~~~~ 42 (109)
.+++++||||...
T Consensus 16 ~~~~~liDvR~~~ 28 (103)
T 3iwh_A 16 SKPVQIVDVRTDE 28 (103)
T ss_dssp SSCCEEEECSCHH
T ss_pred CCCeEEEECCChh
Confidence 4679999999753
No 131
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=20.56 E-value=91 Score=25.63 Aligned_cols=41 Identities=12% Similarity=0.021 Sum_probs=27.0
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCC--Cc-------ccEEEEEEcCC
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKC--DW-------TDYMVIATGRS 55 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~--~~-------aDyfVI~Ta~S 55 (109)
.+.+|+ .+++.+.+ .+.++.+.|+.+.. .+ .+.+|++|.+-
T Consensus 32 te~~A~------~la~~l~~-~g~~~~v~~~~~~~~~~l~~~~~~~~~~vi~~~sT~ 81 (618)
T 3qe2_A 32 AEEFAN------RLSKDAHR-YGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATY 81 (618)
T ss_dssp HHHHHH------HHHHHGGG-GTCCEEEECGGGSCGGGGGGGGGSTTCEEEEEEECB
T ss_pred HHHHHH------HHHHHHHh-CCCceEEechHHcCHHHhhhcccccCcEEEEEcCcc
Confidence 457888 77877764 45678888886542 22 35688876554
No 132
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=20.55 E-value=1.6e+02 Score=18.28 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHhCCCCCeEEEecCCCCC---cccE-------------EEEEEcCCHHHHHHHHHHHHHHH
Q 033883 15 RPSMTSVVNPTFDLKADDVKVIPVGEKCD---WTDY-------------MVIATGRSTWHVKNIAQAIIYKA 70 (109)
Q Consensus 15 ~~~i~~i~~~l~dkKa~dI~vlDv~~~~~---~aDy-------------fVI~Ta~S~rh~~ala~~i~~~l 70 (109)
++.++.+.++|.+..+.-.++.++++.-. .+.. ..|-..-++.++..+.+.|.+.+
T Consensus 10 ~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~ 81 (112)
T 2eg2_A 10 PFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDEDVEKVVETIVKTA 81 (112)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEC-----------------CCEEEEEEEEEECGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEeEeecccCCCceeeeccccccccccEEEEEEEEcHHHHHHHHHHHHHHh
Confidence 45678899999999999999999988532 2111 13444446778888878777665
No 133
>2q5w_E Molybdopterin-converting factor subunit 2; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_A*
Probab=20.46 E-value=1.7e+02 Score=19.86 Aligned_cols=56 Identities=4% Similarity=-0.028 Sum_probs=38.6
Q ss_pred HHHHHH-HHHhCCCCCeEEEecCCCCCcc--cEEEEEEcCCHHHHHHHHHHHHHHHHHh
Q 033883 18 MTSVVN-PTFDLKADDVKVIPVGEKCDWT--DYMVIATGRSTWHVKNIAQAIIYKAKQR 73 (109)
Q Consensus 18 i~~i~~-~l~dkKa~dI~vlDv~~~~~~a--DyfVI~Ta~S~rh~~ala~~i~~~lk~~ 73 (109)
++.|++ +...-...+|.++-=-+.-... =.||.+++.-.+..-..++.+.+.+|.+
T Consensus 61 l~~I~~ea~~r~~~~~v~v~HR~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~ 119 (149)
T 2q5w_E 61 LAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEI 119 (149)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEEEEEcccCCCCeEEEEEEEcccHHHHHHHHHHHHHHHHhh
Confidence 335554 4445567778877655543333 3567778888888888899999999986
No 134
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=20.42 E-value=2e+02 Score=19.18 Aligned_cols=45 Identities=18% Similarity=0.131 Sum_probs=33.2
Q ss_pred CCCCCeEEEecCCCC--------CcccEEEEEEcCCHHHHHHHHHHHHHHHHHh
Q 033883 28 LKADDVKVIPVGEKC--------DWTDYMVIATGRSTWHVKNIAQAIIYKAKQR 73 (109)
Q Consensus 28 kKa~dI~vlDv~~~~--------~~aDyfVI~Ta~S~rh~~ala~~i~~~lk~~ 73 (109)
+..-|++++|...-. ..+|++||.+-.+..-++++.. +.+.+++.
T Consensus 129 ~~~yD~viiD~pp~~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~-~~~~~~~~ 181 (254)
T 3kjh_A 129 LDKKEAVVMDMGAGIEHLTRGTAKAVDMMIAVIEPNLNSIKTGLN-IEKLAGDL 181 (254)
T ss_dssp HTCCSEEEEEECTTCTTCCHHHHTTCSEEEEEECSSHHHHHHHHH-HHHHHHHH
T ss_pred cCCCCEEEEeCCCcccHHHHHHHHHCCEEEEecCCCHHHHHHHHH-HHHHHHHc
Confidence 456799999998753 3689999999998888877644 44455443
No 135
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=20.37 E-value=1.3e+02 Score=17.02 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCCCCeEEEecCCCCCcccEEEEEEcCCHHHHHHHH
Q 033883 19 TSVVNPTFDLKADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIA 63 (109)
Q Consensus 19 ~~i~~~l~dkKa~dI~vlDv~~~~~~aDyfVI~Ta~S~rh~~ala 63 (109)
+.+++.|.+.. +| ..+-..++-.||++.+-++|..++..+.
T Consensus 16 ~~~~~~l~~~p--eV--~~~~~vtG~~d~l~~v~~~d~~~l~~~~ 56 (83)
T 2zbc_A 16 DEVFERLKSMS--EV--TEVHVVYGVYDIVVKVEADSMDKLKDFV 56 (83)
T ss_dssp HHHHHHHTTCT--TE--EEEEECSSSCSEEEEEECSSHHHHHHHH
T ss_pred HHHHHHHhCCC--Ce--EEEEEEeccCCEEEEEEECCHHHHHHHH
Confidence 35555554432 33 3334445567999999999999887654
No 136
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=20.36 E-value=81 Score=20.93 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=20.9
Q ss_pred chHHHHhcCCCHHHHHHHHHhCC-----CCCeEEEecCC
Q 033883 7 ESETLARKRPSMTSVVNPTFDLK-----ADDVKVIPVGE 40 (109)
Q Consensus 7 ~~~~l~~~~~~i~~i~~~l~dkK-----a~dI~vlDv~~ 40 (109)
-+..|++ .+++.+.+.. +.++.++|+.+
T Consensus 15 ~t~~la~------~~~~~l~~~~~~~~~g~~v~~~dl~~ 47 (191)
T 1t0i_A 15 VCPEIAA------YVKRTIENSEELIDQKLKIQVVDLQQ 47 (191)
T ss_dssp SHHHHHH------HHHHHHHTCTTTTTTTCEEEEECHHH
T ss_pred chHHHHH------HHHHHHHHhhccCCCCceEEEEehhh
Confidence 3566777 7888887763 67899999875
No 137
>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A
Probab=20.36 E-value=36 Score=23.98 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=11.6
Q ss_pred EEEEEEcCCHHHHHHH
Q 033883 47 YMVIATGRSTWHVKNI 62 (109)
Q Consensus 47 yfVI~Ta~S~rh~~al 62 (109)
.|+|||||+...++.+
T Consensus 39 ~~~iaTGR~~~~~~~~ 54 (271)
T 1rlm_A 39 KFVVASGNQYYQLISF 54 (271)
T ss_dssp EEEEECSSCHHHHGGG
T ss_pred EEEEEeCCcHHHHHHH
Confidence 5789999987665543
No 138
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=20.32 E-value=1.2e+02 Score=22.47 Aligned_cols=52 Identities=8% Similarity=0.061 Sum_probs=34.7
Q ss_pred hHHHHhcCCCHHHHHHHHHhCCCCCeEEEecCCCC--------------------CcccEEEEEEcCCHH----HHHHHH
Q 033883 8 SETLARKRPSMTSVVNPTFDLKADDVKVIPVGEKC--------------------DWTDYMVIATGRSTW----HVKNIA 63 (109)
Q Consensus 8 ~~~l~~~~~~i~~i~~~l~dkKa~dI~vlDv~~~~--------------------~~aDyfVI~Ta~S~r----h~~ala 63 (109)
+..|++ .+++.+.+ .+-++.++|+.+.. ..||.+||+|-.=.. ++++..
T Consensus 74 T~~La~------~~~~~l~~-~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn~sipg~LKn~I 146 (279)
T 2fzv_A 74 SRLAVE------EAARLLQF-FGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERHGQITSVMKAQI 146 (279)
T ss_dssp HHHHHH------HHHHHHHH-TTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEETTEECHHHHHHH
T ss_pred HHHHHH------HHHHHHhh-CCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCccccCcCHHHHHHH
Confidence 455666 77888776 45689999998854 147889998865443 444444
Q ss_pred HHH
Q 033883 64 QAI 66 (109)
Q Consensus 64 ~~i 66 (109)
|.+
T Consensus 147 Drl 149 (279)
T 2fzv_A 147 DHL 149 (279)
T ss_dssp HHS
T ss_pred HHH
Confidence 443
No 139
>1p1l_A CUTA, periplasmic divalent cation tolerance protein CUT; NYSGXRC, PSI, protein structure initiative; 2.00A {Archaeoglobus fulgidus} SCOP: d.58.5.2
Probab=20.18 E-value=1.1e+02 Score=19.40 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=18.4
Q ss_pred EEEEEEcCCHHHHHHHHHHHHH
Q 033883 47 YMVIATGRSTWHVKNIAQAIIY 68 (109)
Q Consensus 47 yfVI~Ta~S~rh~~ala~~i~~ 68 (109)
.+|.+|..|....+.||+.+.+
T Consensus 3 ~~V~~T~p~~~~A~~ia~~Lve 24 (102)
T 1p1l_A 3 NFIYITAPSLEEAERIAKRLLE 24 (102)
T ss_dssp EEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHh
Confidence 3789999999999999887753
No 140
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=20.07 E-value=81 Score=20.70 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=15.4
Q ss_pred EEEEEEcCCHHHHHHHHHHH
Q 033883 47 YMVIATGRSTWHVKNIAQAI 66 (109)
Q Consensus 47 yfVI~Ta~S~rh~~ala~~i 66 (109)
.++|+||++...++.+++.+
T Consensus 53 ~~~i~Tg~~~~~~~~~~~~l 72 (180)
T 1k1e_A 53 QVAVLSGRDSPILRRRIADL 72 (180)
T ss_dssp EEEEEESCCCHHHHHHHHHH
T ss_pred eEEEEeCCCcHHHHHHHHHc
Confidence 47899999998887776543
Done!