Query 033884
Match_columns 109
No_of_seqs 108 out of 130
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 07:23:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033884.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033884hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3319 Predicted membrane pro 100.0 1.8E-59 4E-64 350.9 4.6 109 1-109 1-109 (153)
2 PF04061 ORMDL: ORMDL family ; 100.0 1.1E-58 2.3E-63 342.1 6.3 98 12-109 1-99 (136)
3 COG5081 Predicted membrane pro 100.0 3.4E-48 7.3E-53 294.2 1.4 103 6-109 27-129 (180)
4 PHA02291 hypothetical protein 40.8 29 0.00062 25.9 2.6 17 20-36 2-18 (132)
5 PF12273 RCR: Chitin synthesis 25.9 50 0.0011 23.3 1.8 16 24-39 2-17 (130)
6 PF04120 Iron_permease: Low af 24.6 81 0.0018 23.3 2.7 53 16-71 10-63 (132)
7 PHA02975 hypothetical protein; 19.7 1.3E+02 0.0027 20.4 2.6 13 3-15 27-39 (69)
8 COG4327 Predicted membrane pro 17.9 55 0.0012 23.6 0.6 23 13-35 51-73 (101)
9 PF12897 Aminotran_MocR: Alani 17.2 1.1E+02 0.0025 26.9 2.5 34 53-106 97-132 (425)
10 cd01205 WASP WASP-type EVH1 do 14.8 1.1E+02 0.0024 21.8 1.5 56 47-107 21-79 (105)
No 1
>KOG3319 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.8e-59 Score=350.89 Aligned_cols=109 Identities=50% Similarity=0.858 Sum_probs=107.1
Q ss_pred CccccCCCCCCCCCcceecCCchhhhHHHHHHHHHHHHHhhcCCCcCcchhhhhHHHHhhhhhhheeecccCCCCCCccc
Q 033884 1 MYVRTVPPTDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPFADDQGIY 80 (109)
Q Consensus 1 ~~~~~~~~~~~N~N~~W~~~~G~W~~yil~i~l~~l~~l~ip~~s~~~aWTltn~~h~~~ty~~fHwvKGtPf~~~qG~y 80 (109)
++.++.+++|+|+|++|+++||+|++|+++|+++|++++|+||+|.+++|||||++|+++||+||||+||+||++|||+|
T Consensus 1 m~~~~~~~~~~N~Nt~w~~~rG~Wl~yil~i~ll~l~~ls~p~~s~~~aWTltnl~h~~~tyi~fH~vkGtPF~~d~g~y 80 (153)
T KOG3319|consen 1 MMDVADQHSDVNPNTRWVNQRGAWLIYILIILLLHLVLLSIPFVSPPWAWTLTNLIHNIGTYIFFHWVKGTPFEDDQGAY 80 (153)
T ss_pred CCccccCcCcCCCCceeeecCchHHHHHHHHHHHHHHHHhCccCCcchhHHHHHHHHHHhHheeEEEecCCCCcCCCcHh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeecCCCCCccceeEEEeecccC
Q 033884 81 NGLTWWEQIDNGKQLTRNRKFLTVVPVVL 109 (109)
Q Consensus 81 ~~LT~WEQID~g~q~T~trKFL~~vPIvL 109 (109)
|+||+|||||+|.||||+||||++|||||
T Consensus 81 ~~lT~WEQid~g~q~T~~RKFLtivPIvL 109 (153)
T KOG3319|consen 81 RLLTHWEQIDDGVQYTPSRKFLTIVPIVL 109 (153)
T ss_pred hhccHHHHhccccccccchhhhhHHHHHH
Confidence 99999999999999999999999999986
No 2
>PF04061 ORMDL: ORMDL family ; InterPro: IPR007203 ORMDL1 belongs to a novel gene family comprising three genes in humans (ORMDL1, ORMDL2 and ORMDL3), and homologs in yeast, microsporidia, plants, Drosophila, urochordates and vertebrates. ORMDLs are involved in protein folding in the endoplasmic reticulum. ; GO: 0016021 integral to membrane
Probab=100.00 E-value=1.1e-58 Score=342.15 Aligned_cols=98 Identities=51% Similarity=0.957 Sum_probs=96.7
Q ss_pred CCCcceecCCchhhhHHHHHHHHHHHHHhhcCCCcCcchhhhhHHHHhhhhhhheeecccCCCC-CCcccCCCcceeeec
Q 033884 12 NRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPFAD-DQGIYNGLTWWEQID 90 (109)
Q Consensus 12 N~N~~W~~~~G~W~~yil~i~l~~l~~l~ip~~s~~~aWTltn~~h~~~ty~~fHwvKGtPf~~-~qG~y~~LT~WEQID 90 (109)
|||++|+|+||+|++|+++|+++|++++++|++|+++|||+||++|+++||+||||+||+||++ |||+||+||+|||||
T Consensus 1 N~N~~W~~~~g~W~~yi~li~~~~l~~~~ip~~s~~~~WTltn~~h~~~ty~~fHwvKGtPf~~~~qG~y~~LT~WEQID 80 (136)
T PF04061_consen 1 NPNANWVNSRGAWLIYIVLILLLKLILLSIPGFSQEWAWTLTNLIHNIITYIFFHWVKGTPFEFMDQGAYDNLTMWEQID 80 (136)
T ss_pred CCCchhccCccHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHhheeeecCCCCCCCCCcccccCcHHHhcc
Confidence 8999999999999999999999999999999999999999999999999999999999999976 999999999999999
Q ss_pred CCCCCccceeEEEeecccC
Q 033884 91 NGKQLTRNRKFLTVVPVVL 109 (109)
Q Consensus 91 ~g~q~T~trKFL~~vPIvL 109 (109)
+|+||||+||||++|||+|
T Consensus 81 ~g~q~TptrKFL~~vPivL 99 (136)
T PF04061_consen 81 DGAQYTPTRKFLTIVPIVL 99 (136)
T ss_pred cCCcCCcceeeeehhHHHH
Confidence 9999999999999999986
No 3
>COG5081 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=3.4e-48 Score=294.21 Aligned_cols=103 Identities=31% Similarity=0.616 Sum_probs=98.7
Q ss_pred CCCCCCCCCcceecCCchhhhHHHHHHHHHHHHHhhcCCCcCcchhhhhHHHHhhhhhhheeecccCCCCCCcccCCCcc
Q 033884 6 VPPTDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPFADDQGIYNGLTW 85 (109)
Q Consensus 6 ~~~~~~N~N~~W~~~~G~W~~yil~i~l~~l~~l~ip~~s~~~aWTltn~~h~~~ty~~fHwvKGtPf~~~qG~y~~LT~ 85 (109)
...+++|.|+.|+++||+|++|+++|+++|+++..+ |++.+++|||||++|++++|+||||+||+||++++|+||+|||
T Consensus 27 dq~~~~n~Na~Wv~qrGaWiIHvvvI~lLkl~~s~~-~~t~el~WtLtnmtY~igsfImFH~i~GtPFdfnggaYd~lTm 105 (180)
T COG5081 27 DQQVLPNMNATWVDQRGAWIIHVVVILLLKLFYSLF-GVTDELGWTLTNMTYNIGSFIMFHLIKGTPFDFNGGAYDNLTM 105 (180)
T ss_pred hhcccccccchhhhccCceehHHHHHHHHHHHHHHh-cCCchhhhhhHHHHHHhhhheeEEeecCCCcccCCchhhhhhH
Confidence 456678999999999999999999999999997776 8999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCccceeEEEeecccC
Q 033884 86 WEQIDNGKQLTRNRKFLTVVPVVL 109 (109)
Q Consensus 86 WEQID~g~q~T~trKFL~~vPIvL 109 (109)
|||+|+|.||||+||||.++||+|
T Consensus 106 WEQl~e~~~yTP~rkfll~~Piil 129 (180)
T COG5081 106 WEQLDEETLYTPDRKFLLLVPIIL 129 (180)
T ss_pred HHHhccccccCcchhHHHHHHHHH
Confidence 999999999999999999999985
No 4
>PHA02291 hypothetical protein
Probab=40.82 E-value=29 Score=25.87 Aligned_cols=17 Identities=6% Similarity=0.078 Sum_probs=13.2
Q ss_pred CCchhhhHHHHHHHHHH
Q 033884 20 YPGVWTTYLSILFISWL 36 (109)
Q Consensus 20 ~~G~W~~yil~i~l~~l 36 (109)
|+-+|++|+++++++-.
T Consensus 2 S~K~~iFYiL~~~VL~~ 18 (132)
T PHA02291 2 SRKASIFYILVVIVLAF 18 (132)
T ss_pred CcchhhHHHHHHHHHHH
Confidence 67799999998875433
No 5
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=25.90 E-value=50 Score=23.32 Aligned_cols=16 Identities=19% Similarity=0.592 Sum_probs=8.2
Q ss_pred hhhHHHHHHHHHHHHH
Q 033884 24 WTTYLSILFISWLLVL 39 (109)
Q Consensus 24 W~~yil~i~l~~l~~l 39 (109)
|++.+++|+++-++++
T Consensus 2 W~l~~iii~~i~l~~~ 17 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLF 17 (130)
T ss_pred eeeHHHHHHHHHHHHH
Confidence 5666555554444433
No 6
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=24.59 E-value=81 Score=23.34 Aligned_cols=53 Identities=11% Similarity=0.254 Sum_probs=32.1
Q ss_pred ceecCCchhhhHHHHHHHHHHHHHhhcCCCcCcchhh-hhHHHHhhhhhhheeeccc
Q 033884 16 EWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTL-VHLSHFFVTYHFFHWKKGT 71 (109)
Q Consensus 16 ~W~~~~G~W~~yil~i~l~~l~~l~ip~~s~~~aWTl-tn~~h~~~ty~~fHwvKGt 71 (109)
.|..++.+-++.+++|+ ++++.- |.+.-+-.|+| .|..=.++||.|.=-+.++
T Consensus 10 ~~~gs~~~f~~~~~~Ii-~W~i~G--p~~~~sdtWQLviNt~ttIitFlmvfLIQn~ 63 (132)
T PF04120_consen 10 DVAGSPWAFVIAVAVII-VWAISG--PVFGFSDTWQLVINTATTIITFLMVFLIQNT 63 (132)
T ss_pred HHHCCHHHHHHHHHHHH-HHHHHh--ccccCcchHHHHHccHHHHHHHHHHHHHHhh
Confidence 45555666666555555 444433 44454555654 5888889999887665554
No 7
>PHA02975 hypothetical protein; Provisional
Probab=19.75 E-value=1.3e+02 Score=20.43 Aligned_cols=13 Identities=8% Similarity=0.015 Sum_probs=7.2
Q ss_pred cccCCCCCCCCCc
Q 033884 3 VRTVPPTDLNRNT 15 (109)
Q Consensus 3 ~~~~~~~~~N~N~ 15 (109)
+|++.+.+.|++.
T Consensus 27 VksVLtdk~~~~~ 39 (69)
T PHA02975 27 IMHVLTGKKEPKK 39 (69)
T ss_pred HHHHHcCCCCCCc
Confidence 4555555556666
No 8
>COG4327 Predicted membrane protein [Function unknown]
Probab=17.90 E-value=55 Score=23.61 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=18.7
Q ss_pred CCcceecCCchhhhHHHHHHHHH
Q 033884 13 RNTEWFTYPGVWTTYLSILFISW 35 (109)
Q Consensus 13 ~N~~W~~~~G~W~~yil~i~l~~ 35 (109)
|=.-||.+.|+=++|+++|++--
T Consensus 51 pf~ywma~QGsiitfVvlifvya 73 (101)
T COG4327 51 PFGYWMAQQGSIITFVVLIFVYA 73 (101)
T ss_pred chhhhhhcCCCeeehHHHHHHHH
Confidence 33579999999999999998543
No 9
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=17.21 E-value=1.1e+02 Score=26.93 Aligned_cols=34 Identities=35% Similarity=0.569 Sum_probs=22.7
Q ss_pred hhHHHHhhhhhhheeecc--cCCCCCCcccCCCcceeeecCCCCCccceeEEEeec
Q 033884 53 VHLSHFFVTYHFFHWKKG--TPFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVP 106 (109)
Q Consensus 53 tn~~h~~~ty~~fHwvKG--tPf~~~qG~y~~LT~WEQID~g~q~T~trKFL~~vP 106 (109)
-|+.|-++++.++|=+.| +||. ++ +..|||.=||
T Consensus 97 L~lM~d~i~~a~~~G~~~~~~PW~------------------~~--~~vKfLCPvP 132 (425)
T PF12897_consen 97 LNLMHDTISRAMLHGVPGSETPWC------------------KE--EKVKFLCPVP 132 (425)
T ss_dssp HHHHHHHHHHHHHH--TT-SS-GG------------------GS--S--EEEEEES
T ss_pred HHHHHHHHHHHHhcCCCCCCCCch------------------hc--cCceEEecCC
Confidence 588999999999998876 4762 11 5689998887
No 10
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=14.77 E-value=1.1e+02 Score=21.82 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=33.5
Q ss_pred CcchhhhhHHHHhhhhhhheeecccCC--CCCCcccCCCcceee-ecCCCCCccceeEEEeecc
Q 033884 47 GMAWTLVHLSHFFVTYHFFHWKKGTPF--ADDQGIYNGLTWWEQ-IDNGKQLTRNRKFLTVVPV 107 (109)
Q Consensus 47 ~~aWTltn~~h~~~ty~~fHwvKGtPf--~~~qG~y~~LT~WEQ-ID~g~q~T~trKFL~~vPI 107 (109)
+-.|+.+ ..++++++ =...+.+-| -.| .-++-..||| |=+|-+|...|+|+-.++.
T Consensus 21 ~~~W~~~--~~Gvl~~v-kD~~~~sy~lrl~D--~~~~~v~weqElY~~f~y~~~r~fFhtFe~ 79 (105)
T cd01205 21 PGRWTKT--LTGAVCLV-KDNVQKSYFIRLFD--IKANRIIWEQELYDNFEYQQPRPFFHTFEG 79 (105)
T ss_pred CCeeEEE--eEEEEEEE-EECCCCEEEEEEEE--ccCCcEEEEEEcccCcEEccCCCcEEEEec
Confidence 4566666 44555544 122233333 011 1125678998 7788899999999988763
Done!