Query 033884
Match_columns 109
No_of_seqs 108 out of 130
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 12:14:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lpd_A Uncharacterized protein 31.1 15 0.00053 25.1 0.9 22 70-96 17-38 (95)
2 2khr_A Protein MBTH; sideropho 23.9 24 0.00084 22.9 0.8 21 71-96 7-27 (74)
3 2pst_X Hypothetical protein PA 19.5 21 0.00072 23.2 -0.2 21 71-96 5-25 (74)
4 3gnz_P 25 kDa protein elicitor 12.2 41 0.0014 25.6 -0.3 19 74-92 164-182 (213)
5 2hx6_A Ribonuclease, GP61.9; a 11.6 72 0.0024 23.5 0.8 14 87-100 91-104 (153)
6 1xkp_C Chaperone protein YSCB; 10.2 80 0.0027 23.0 0.7 11 71-81 15-26 (143)
7 3st1_A Necrosis-and ethylene-i 10.1 48 0.0016 25.2 -0.5 19 74-92 163-181 (214)
8 3hzp_A NTF2-like protein of un 9.7 42 0.0014 24.2 -1.0 25 67-94 89-113 (131)
9 5gds_I Hirunorm V; serine prot 8.8 1.3E+02 0.0045 16.0 1.0 14 69-82 6-19 (26)
10 3oae_A Late major capsid prote 8.6 71 0.0024 27.0 -0.1 24 78-102 393-423 (428)
No 1
>2lpd_A Uncharacterized protein; infectious disease, melioidosis, seattle structural genomics for infectious disease, ssgcid, drug target; NMR {Burkholderia pseudomallei}
Probab=31.06 E-value=15 Score=25.11 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=16.1
Q ss_pred ccCCCCCCcccCCCcceeeecCCCCCc
Q 033884 70 GTPFADDQGIYNGLTWWEQIDNGKQLT 96 (109)
Q Consensus 70 GtPf~~~qG~y~~LT~WEQID~g~q~T 96 (109)
-.||++++|.|.-| ++++.||+
T Consensus 17 ~~PFDd~~~~f~VL-----vN~E~QYS 38 (95)
T 2lpd_A 17 QGPGSMDDELYFVV-----RNNEGQYS 38 (95)
T ss_dssp SCSCSSCCCCEEEE-----ECSSCSCE
T ss_pred cCCCcCCCCcEEEE-----EcCCCccc
Confidence 36998877766544 78888886
No 2
>2khr_A Protein MBTH; siderophores, mycobactin, MTBH-like, 2-hydroxyphenyloxazolin tuberculosis, biosynthetic protein, structural genomics; NMR {Mycobacterium tuberculosis}
Probab=23.90 E-value=24 Score=22.94 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=15.6
Q ss_pred cCCCCCCcccCCCcceeeecCCCCCc
Q 033884 71 TPFADDQGIYNGLTWWEQIDNGKQLT 96 (109)
Q Consensus 71 tPf~~~qG~y~~LT~WEQID~g~q~T 96 (109)
.||++++|.|.-| ++++.||+
T Consensus 7 npfdd~~~~f~Vl-----vN~E~QyS 27 (74)
T 2khr_A 7 NPFDDDNGAFFVL-----VNDEDQHS 27 (74)
T ss_dssp CCCSCCCSCEEEE-----EETTCSCE
T ss_pred CCCCCCCCeEEEE-----EcCCCccc
Confidence 7998877766544 67888886
No 3
>2pst_X Hypothetical protein PA2412; pyoverdine synthesis, non-ribosomal peptide synthesis cluste like family, COG3251, unknown function; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: d.100.2.1 PDB: 2gpf_A
Probab=19.47 E-value=21 Score=23.22 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=11.3
Q ss_pred cCCCCCCcccCCCcceeeecCCCCCc
Q 033884 71 TPFADDQGIYNGLTWWEQIDNGKQLT 96 (109)
Q Consensus 71 tPf~~~qG~y~~LT~WEQID~g~q~T 96 (109)
.||++++|.|.-| ++++.||+
T Consensus 5 npfdd~~~~f~Vl-----vN~E~QyS 25 (74)
T 2pst_X 5 SVFDRDDIQFQVV-----VNHEEQYS 25 (74)
T ss_dssp -----CCSCEEEE-----EETTCCEE
T ss_pred CCCcCCCCeEEEE-----EcCCCccc
Confidence 7998877766544 67888876
No 4
>3gnz_P 25 kDa protein elicitor; toxin, necrosi, ethyleneinducing, immunityassociated responses, plants; 1.35A {Pythium aphanidermatum} PDB: 3gnu_P
Probab=12.21 E-value=41 Score=25.58 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=15.9
Q ss_pred CCCCcccCCCcceeeecCC
Q 033884 74 ADDQGIYNGLTWWEQIDNG 92 (109)
Q Consensus 74 ~~~qG~y~~LT~WEQID~g 92 (109)
+.+.|++..|-+|||+-++
T Consensus 164 t~~~G~~q~LI~Weql~~~ 182 (213)
T 3gnz_P 164 TTSAGKQQPLIQWEQMTQA 182 (213)
T ss_dssp CSSCCBCCCEEEGGGSCHH
T ss_pred cCCCCCccCeeecccCCHH
Confidence 4567999999999998754
No 5
>2hx6_A Ribonuclease, GP61.9; alpha/beta fold, hydrolase; NMR {Enterobacteria phage T4}
Probab=11.56 E-value=72 Score=23.47 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=12.4
Q ss_pred eeecCCCCCcccee
Q 033884 87 EQIDNGKQLTRNRK 100 (109)
Q Consensus 87 EQID~g~q~T~trK 100 (109)
|++|+|.+|-|.|-
T Consensus 91 ~~~~~~veyRP~RL 104 (153)
T 2hx6_A 91 EDFIDGVEYRPGRL 104 (153)
T ss_dssp SSCCSSCSSCCSEE
T ss_pred hhhCccccccccee
Confidence 78999999999884
No 6
>1xkp_C Chaperone protein YSCB; YOPN, type III secretion, SYCN, membrane PR chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: d.198.1.1
Probab=10.18 E-value=80 Score=23.03 Aligned_cols=11 Identities=64% Similarity=1.183 Sum_probs=9.6
Q ss_pred cCC-CCCCcccC
Q 033884 71 TPF-ADDQGIYN 81 (109)
Q Consensus 71 tPf-~~~qG~y~ 81 (109)
-|| ++.||+|+
T Consensus 15 gpFVAd~qG~Y~ 26 (143)
T 1xkp_C 15 XPFVADXQGVYR 26 (143)
T ss_dssp CCCCCCTTSCEE
T ss_pred CCccccCCCceE
Confidence 599 88999997
No 7
>3st1_A Necrosis-and ethylene-inducing protein; mpnep2, NLP family, unknown function, toxin; 1.80A {Moniliophthora perniciosa}
Probab=10.14 E-value=48 Score=25.20 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=16.0
Q ss_pred CCCCcccCCCcceeeecCC
Q 033884 74 ADDQGIYNGLTWWEQIDNG 92 (109)
Q Consensus 74 ~~~qG~y~~LT~WEQID~g 92 (109)
+...|++..|-+|||+-++
T Consensus 163 t~~~G~~q~LI~Weql~~~ 181 (214)
T 3st1_A 163 TDKGGDLPTLASWEGMGAD 181 (214)
T ss_dssp CSSCCBCCCEEETTTSCHH
T ss_pred ccCCCCccCeeecccCCHH
Confidence 5667999999999998764
No 8
>3hzp_A NTF2-like protein of unknown function; YP_291699.1, structural genomics, joint center structural genomics, JCSG; HET: MSE 1PE; 1.40A {Prochlorococcus marinus}
Probab=9.68 E-value=42 Score=24.17 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=19.7
Q ss_pred eecccCCCCCCcccCCCcceeeecCCCC
Q 033884 67 WKKGTPFADDQGIYNGLTWWEQIDNGKQ 94 (109)
Q Consensus 67 wvKGtPf~~~qG~y~~LT~WEQID~g~q 94 (109)
-.||.|++ +-++.+--|.|+|++=+
T Consensus 89 sYkG~pne---d~~~YtrVwKK~d~~WK 113 (131)
T 3hzp_A 89 TYKGTQND---DLPTVTSIFKKIDEKWK 113 (131)
T ss_dssp EETTEEEE---EBCEEEEEEEEETTEEE
T ss_pred EEcCccCC---cceeeehhhhhcCCcEE
Confidence 35899986 46888899999998644
No 9
>5gds_I Hirunorm V; serine protease-inhibitor complex, thrombin, thrombin synthe inhibitors, antithrombotics, hirunorms; HET: CHG NAL ALC DGL NAG; 2.10A {Homo sapiens} PDB: 4thn_I*
Probab=8.78 E-value=1.3e+02 Score=15.97 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=11.4
Q ss_pred cccCCCCCCcccCC
Q 033884 69 KGTPFADDQGIYNG 82 (109)
Q Consensus 69 KGtPf~~~qG~y~~ 82 (109)
.|.|=+.+||+|+.
T Consensus 6 agkPqshn~gDfe~ 19 (26)
T 5gds_I 6 AGXPESHXGGDYEE 19 (26)
T ss_pred CCCcccccCCCccc
Confidence 47888889999875
No 10
>3oae_A Late major capsid protein L1; jelly roll, receptor HSPG, virus capsid, VIR protein; HET: JHM IDS; 2.80A {Human papillomavirus} PDB: 2r5h_A 2r5j_A 2r5k_A
Probab=8.64 E-value=71 Score=27.03 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=16.0
Q ss_pred cccCCCcceeeecCCC-------CCccceeEE
Q 033884 78 GIYNGLTWWEQIDNGK-------QLTRNRKFL 102 (109)
Q Consensus 78 G~y~~LT~WEQID~g~-------q~T~trKFL 102 (109)
.-|..++||| +|=.+ ||.=-||||
T Consensus 393 DPy~~~~FW~-VdL~ekfS~dLdQ~pLGRkFL 423 (428)
T 3oae_A 393 DPLKKYTFWE-VNLKEKFSADLDQFPLGRKFL 423 (428)
T ss_dssp CTTTTSCCEE-EECTTTCBSCGGGSHHHHHHH
T ss_pred Cccccceeee-eecchhhhhcccCccchhhhh
Confidence 4588999998 44333 455567776
Done!