Query 033884
Match_columns 109
No_of_seqs 108 out of 130
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 12:14:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033884.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033884hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rutx4 g.39.1.3 (X:114-146) L 16.4 10 0.00075 20.1 -0.6 9 65-73 15-23 (33)
2 d2dloa2 g.39.1.3 (A:43-75) Thy 10.9 29 0.0021 18.2 0.2 9 68-76 9-17 (33)
3 d1xkpc1 d.198.1.1 (C:2-127) Ch 10.9 34 0.0025 22.8 0.7 11 71-81 14-25 (126)
4 d1n1qa_ a.25.1.1 (A:) Dodecame 8.7 51 0.0037 20.5 0.9 21 53-73 18-39 (149)
5 d1nbwb_ c.51.3.2 (B:) Glycerol 8.4 84 0.0061 20.1 1.9 19 51-74 92-110 (113)
6 d2axti1 f.23.37.1 (I:1-35) Pho 7.4 1.5E+02 0.011 15.4 2.4 15 24-38 6-20 (35)
7 d3cx5i1 f.23.14.1 (I:4-58) Sub 7.2 24 0.0017 20.4 -1.3 14 84-97 35-48 (55)
8 d1m56d_ f.23.8.1 (D:) Bacteria 7.0 1.9E+02 0.014 15.6 2.7 18 24-41 22-39 (42)
9 d1qled_ f.23.8.1 (D:) Bacteria 7.0 1.9E+02 0.013 15.6 2.7 18 24-41 23-40 (43)
10 d1ppjw_ f.23.14.1 (W:) Subunit 6.9 26 0.0019 20.7 -1.3 13 84-96 41-53 (62)
No 1
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.35 E-value=10 Score=20.06 Aligned_cols=9 Identities=44% Similarity=1.058 Sum_probs=8.4
Q ss_pred heeecccCC
Q 033884 65 FHWKKGTPF 73 (109)
Q Consensus 65 fHwvKGtPf 73 (109)
||.+.|+-|
T Consensus 15 FHyvNG~lf 23 (33)
T d1rutx4 15 FHYINGSLF 23 (33)
T ss_dssp EEEETTEEE
T ss_pred eEEecCEEE
Confidence 899999999
No 2
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.89 E-value=29 Score=18.22 Aligned_cols=9 Identities=44% Similarity=0.792 Sum_probs=6.5
Q ss_pred ecccCCCCC
Q 033884 68 KKGTPFADD 76 (109)
Q Consensus 68 vKGtPf~~~ 76 (109)
..|.||+-|
T Consensus 9 LDGvPFtvD 17 (33)
T d2dloa2 9 LDGIPFTVD 17 (33)
T ss_dssp CTTSCEECC
T ss_pred cCCCcEEEc
Confidence 579999544
No 3
>d1xkpc1 d.198.1.1 (C:2-127) Chaperone protein YscB {Yersinia pestis [TaxId: 632]}
Probab=10.89 E-value=34 Score=22.79 Aligned_cols=11 Identities=64% Similarity=1.295 Sum_probs=9.6
Q ss_pred cCC-CCCCcccC
Q 033884 71 TPF-ADDQGIYN 81 (109)
Q Consensus 71 tPf-~~~qG~y~ 81 (109)
-|| ++.||+|+
T Consensus 14 gpFVad~qG~Y~ 25 (126)
T d1xkpc1 14 KPFVADKQGVYR 25 (126)
T ss_dssp CCCCCCTTSCEE
T ss_pred CCcccCCCCceE
Confidence 599 88999996
No 4
>d1n1qa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus brevis, Dps [TaxId: 1393]}
Probab=8.68 E-value=51 Score=20.46 Aligned_cols=21 Identities=33% Similarity=0.797 Sum_probs=13.3
Q ss_pred hhHHHHhhhhhhhee-ecccCC
Q 033884 53 VHLSHFFVTYHFFHW-KKGTPF 73 (109)
Q Consensus 53 tn~~h~~~ty~~fHw-vKGtPf 73 (109)
.|..-.-.-+--+|| ++|..|
T Consensus 18 A~~~~l~~~~~~~HWnv~G~~F 39 (149)
T d1n1qa_ 18 ANWVVLYVKLHNFHWNVNGPNF 39 (149)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTH
T ss_pred HHHHHHHHHHhhhhhceeCCCH
Confidence 334444445667888 888777
No 5
>d1nbwb_ c.51.3.2 (B:) Glycerol dehydratase reactivase, beta subunit {Klebsiella pneumoniae [TaxId: 573]}
Probab=8.40 E-value=84 Score=20.11 Aligned_cols=19 Identities=21% Similarity=0.076 Sum_probs=15.0
Q ss_pred hhhhHHHHhhhhhhheeecccCCC
Q 033884 51 TLVHLSHFFVTYHFFHWKKGTPFA 74 (109)
Q Consensus 51 Tltn~~h~~~ty~~fHwvKGtPf~ 74 (109)
++-++..|+.=| +||.||.
T Consensus 92 ~~R~iG~NAARl-----vKg~Pf~ 110 (113)
T d1nbwb_ 92 QLRTLGANAGQL-----VKVLPLS 110 (113)
T ss_dssp HHHHHHHHHHHH-----HHTCCCC
T ss_pred HHHHHHHHHHHH-----HhcCCCc
Confidence 567788888766 7999994
No 6
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.43 E-value=1.5e+02 Score=15.37 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=10.0
Q ss_pred hhhHHHHHHHHHHHH
Q 033884 24 WTTYLSILFISWLLV 38 (109)
Q Consensus 24 W~~yil~i~l~~l~~ 38 (109)
++.|++++++.-+++
T Consensus 6 i~Vy~vV~fFv~lFi 20 (35)
T d2axti1 6 ITVYIVVTFFVLLFV 20 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred EehhhHHHHHHHHHH
Confidence 457777777666654
No 7
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.23 E-value=24 Score=20.38 Aligned_cols=14 Identities=29% Similarity=0.767 Sum_probs=10.2
Q ss_pred cceeeecCCCCCcc
Q 033884 84 TWWEQIDNGKQLTR 97 (109)
Q Consensus 84 T~WEQID~g~q~T~ 97 (109)
..||++..|+|+.-
T Consensus 35 ~~we~~NkGKlWkD 48 (55)
T d3cx5i1 35 SWYENHNKGKLWKD 48 (55)
T ss_dssp HHHHHHTTTTSHHH
T ss_pred HHHHhccCcccHHH
Confidence 46888888888643
No 8
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.99 E-value=1.9e+02 Score=15.57 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 033884 24 WTTYLSILFISWLLVLSL 41 (109)
Q Consensus 24 W~~yil~i~l~~l~~l~i 41 (109)
|+++..++.+.-++++++
T Consensus 22 ~~t~~~i~~i~~liflAi 39 (42)
T d1m56d_ 22 MVTWAAVVIVAALIFLAL 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666566666655
No 9
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=6.96 E-value=1.9e+02 Score=15.64 Aligned_cols=18 Identities=44% Similarity=0.554 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 033884 24 WTTYLSILFISWLLVLSL 41 (109)
Q Consensus 24 W~~yil~i~l~~l~~l~i 41 (109)
|++...++.+.-++++++
T Consensus 23 ~~t~~~i~~i~~liflAi 40 (43)
T d1qled_ 23 GATWVSILSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666666665
No 10
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.86 E-value=26 Score=20.70 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=10.1
Q ss_pred cceeeecCCCCCc
Q 033884 84 TWWEQIDNGKQLT 96 (109)
Q Consensus 84 T~WEQID~g~q~T 96 (109)
..||++..|.|+.
T Consensus 41 ~iwe~~NkGKlWK 53 (62)
T d1ppjw_ 41 AIYEHINEGKLWK 53 (62)
T ss_dssp HHHHHHTTTTSHH
T ss_pred HHHHhcccccchH
Confidence 4788888888875
Done!