BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033887
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q53|A Chain A, Solution Structure Of Hypothetical Arabidopsis Thaliana
Protein At3g17210. Center For Eukaryotic Structural
Genomics Target 13081
pdb|1Q53|B Chain B, Solution Structure Of Hypothetical Arabidopsis Thaliana
Protein At3g17210. Center For Eukaryotic Structural
Genomics Target 13081
Length = 112
Score = 177 bits (450), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 82/109 (75%), Positives = 98/109 (89%)
Query: 1 MEEAKGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGF 60
MEEAKG VKHVLLA FK+G + ++I++LIK YANLVNLIEPMK+F WGK+VSIENLHQG+
Sbjct: 4 MEEAKGPVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGY 63
Query: 61 THIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDYKPTTVRV 109
THIFESTFES E VAEY+AHPAHVE+A +FL +L+KVLVIDYKPT+V +
Sbjct: 64 THIFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDYKPTSVSL 112
>pdb|1Q4R|A Chain A, Gene Product Of At3g17210 From Arabidopsis Thaliana
pdb|2Q3P|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
At3g17210 From Arabidopsis Thaliana
Length = 112
Score = 172 bits (437), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 80/108 (74%), Positives = 96/108 (88%)
Query: 2 EEAKGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFT 61
EEAKG VKHVLLA FK+G + ++I++LIK YANLVNLIEP K+F WGK+VSIENLHQG+T
Sbjct: 5 EEAKGPVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPXKAFHWGKDVSIENLHQGYT 64
Query: 62 HIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDYKPTTVRV 109
HIFESTFES E VAEY+AHPAHVE+A +FL +L+KVLVIDYKPT+V +
Sbjct: 65 HIFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDYKPTSVSL 112
>pdb|1SI9|A Chain A, Boiling Stable Protein Isolated From Populus Tremula
pdb|1SI9|B Chain B, Boiling Stable Protein Isolated From Populus Tremula
pdb|1SI9|C Chain C, Boiling Stable Protein Isolated From Populus Tremula
pdb|1TR0|A Chain A, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|B Chain B, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|C Chain C, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|D Chain D, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|E Chain E, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|F Chain F, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|G Chain G, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|H Chain H, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|I Chain I, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|J Chain J, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|K Chain K, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|L Chain L, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|M Chain M, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|N Chain N, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|O Chain O, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|P Chain P, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|R Chain R, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|S Chain S, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|T Chain T, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|U Chain U, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|V Chain V, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|W Chain W, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|X Chain X, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|Y Chain Y, Crystal Structure Of A Boiling Stable Protein Sp1
Length = 108
Score = 100 bits (249), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 66/98 (67%), Gaps = 2/98 (2%)
Query: 7 VVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIEN--LHQGFTHIF 64
+VKH LL +FK+ ++QID I DY NL++LI MKSF WG ++ +E+ L++G+TH F
Sbjct: 8 LVKHTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAF 67
Query: 65 ESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDY 102
ESTFES G+ EY+ A +A FL L + LVIDY
Sbjct: 68 ESTFESKSGLQEYLDSAALAAFAEGFLPTLSQRLVIDY 105
>pdb|1RJJ|A Chain A, Solution Structure Of A Homodimeric Hypothetical Protein,
At5g22580, A Structural Genomics Target From Arabidopsis
Thaliana
pdb|1RJJ|B Chain B, Solution Structure Of A Homodimeric Hypothetical Protein,
At5g22580, A Structural Genomics Target From Arabidopsis
Thaliana
Length = 111
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 69/101 (68%), Gaps = 4/101 (3%)
Query: 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNV-SIENLHQGFTHIFEST 67
KH+++ KFKE T ++D+++K NLV+ I+ +KSF+WG++ S + L QGFTH F T
Sbjct: 7 KHLVVVKFKEDT---KVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMT 63
Query: 68 FESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDYKPTTVR 108
FE+ +G + +HP HVE++ F A ++K++++D+ V+
Sbjct: 64 FENKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDFPVAAVK 104
>pdb|3BGU|A Chain A, Crystal Structure Of A Dimeric Ferredoxin-like Protein
Of Unknown Function (tfu_0763) From Thermobifida Fusca
Yx At 1.50 A Resolution
pdb|3BGU|B Chain B, Crystal Structure Of A Dimeric Ferredoxin-like Protein
Of Unknown Function (tfu_0763) From Thermobifida Fusca
Yx At 1.50 A Resolution
Length = 116
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 8 VKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFEST 67
++H+ L ++ + DQ++Q+I + L I +K++ +G ++ + + F + +
Sbjct: 22 IRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLGLAAGNYDFAVV--AD 79
Query: 68 FESTEGVAEYVAHPAH 83
+ +G Y HP H
Sbjct: 80 LDGEDGFRAYQDHPDH 95
>pdb|3BB5|A Chain A, Crystal Structure Of A Dimeric Ferredoxin-Like Protein Of
Unknown Function (Jann_3925) From Jannaschia Sp. Ccs1 At
2.30 A Resolution
pdb|3BB5|B Chain B, Crystal Structure Of A Dimeric Ferredoxin-Like Protein Of
Unknown Function (Jann_3925) From Jannaschia Sp. Ccs1 At
2.30 A Resolution
pdb|3BB5|C Chain C, Crystal Structure Of A Dimeric Ferredoxin-Like Protein Of
Unknown Function (Jann_3925) From Jannaschia Sp. Ccs1 At
2.30 A Resolution
pdb|3BB5|D Chain D, Crystal Structure Of A Dimeric Ferredoxin-Like Protein Of
Unknown Function (Jann_3925) From Jannaschia Sp. Ccs1 At
2.30 A Resolution
pdb|3BB5|E Chain E, Crystal Structure Of A Dimeric Ferredoxin-Like Protein Of
Unknown Function (Jann_3925) From Jannaschia Sp. Ccs1 At
2.30 A Resolution
pdb|3BB5|F Chain F, Crystal Structure Of A Dimeric Ferredoxin-Like Protein Of
Unknown Function (Jann_3925) From Jannaschia Sp. Ccs1 At
2.30 A Resolution
Length = 121
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
Query: 5 KGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIF 64
+G + H++ + + A D+I + L + + F+ G N E + + + F
Sbjct: 18 QGXLYHLVXLEPEGEGAXDRIXEAXAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGF 77
Query: 65 ESTFESTEGVAEYVAHPAHVEYANLFLANL----EKVLVID 101
TF + Y HP H +A+ + +LV+D
Sbjct: 78 LCTFTDKAALDAYAVHPTHQRAGGXLVASCRNGADGILVVD 118
>pdb|2QYC|A Chain A, Crystal Structure Of A Dimeric Ferredoxin-Like Protein
(Bb1511) From Bordetella Bronchiseptica Rb50 At 1.90 A
Resolution
pdb|2QYC|B Chain B, Crystal Structure Of A Dimeric Ferredoxin-Like Protein
(Bb1511) From Bordetella Bronchiseptica Rb50 At 1.90 A
Resolution
Length = 103
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFE 69
HV+ +F +G + + A + + + +G+NV+ + QG+TH S F
Sbjct: 7 HVVXXEFDDGIDAGFFRTVDEYVARXKRECDGLLLYHFGENVAARS--QGYTHATSSAFV 64
Query: 70 STEGVAEYVAHPAHVEYANLFLANLEKVLVID 101
Y PAHV +++V+V D
Sbjct: 65 DAAAHDAYQVCPAHVAXKAFXGPRIKRVVVYD 96
>pdb|3V7P|A Chain A, Crystal Structure Of Amidohydrolase Nis_0429 (Target
Efi-500396) From Nitratiruptor Sp. Sb155-2
Length = 427
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 27 QLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEY 86
+ K++ N + KSF + LH F H+ + E + +A Y AH H
Sbjct: 226 KFFKEFLNQTRPVNDTKSFLE----LFKELHTLFVHMVWANEEEIQTIASYNAHIIHCPI 281
Query: 87 ANLFLAN----LEKVLVIDYKPTT 106
+N L N LEK+ I Y T
Sbjct: 282 SNRLLGNGVLDLEKIKSIPYAIAT 305
>pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Cysteine
Sulfamoyl Adenylate
pdb|1NJ2|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
pdb|1NJ5|A Chain A, Crystal Structure Of Prolyl-trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Proline
Sulfamoyl Adenylate
pdb|1NJ6|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Alanine
Sulfamoyl Adenylate
Length = 501
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 43 KSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78
K+ Q G ++ NL Q F FE FE+ EG EYV
Sbjct: 249 KTLQIG---TVHNLGQTFARTFEIKFETPEGDHEYV 281
>pdb|3FMB|A Chain A, Crystal Structure Of Dimeric Protein Of Unknown Function
And Ferredoxin-Like Fold (Yp_212648.1) From Bacteroides
Fragilis Nctc 9343 At 1.85 A Resolution
pdb|3FMB|B Chain B, Crystal Structure Of Dimeric Protein Of Unknown Function
And Ferredoxin-Like Fold (Yp_212648.1) From Bacteroides
Fragilis Nctc 9343 At 1.85 A Resolution
Length = 118
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 5 KGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNL----IEPMKSFQWGKNVSIENLHQGF 60
+G VKH++L K ++ ++ + + + I ++ + G N N + +
Sbjct: 18 QGXVKHIVLFKLRDDVPVEEKLVVXNSFKEAIEALPAKISVIRKIEVGLNX---NPGETW 74
Query: 61 THIFESTFESTEGVAEYVAHPAHVEYANLFLANLEKVLVIDYK 103
S F++ + V Y HP HV + E +DY+
Sbjct: 75 NIALYSEFDNLDDVKFYATHPEHVAAGKILAETKESRACVDYE 117
>pdb|2H01|A Chain A, Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I
Length = 192
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 14/78 (17%)
Query: 3 EAKGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTH 62
+ +GVV+H+L+ G + D+I + LI+ ++ + +V N +G
Sbjct: 128 DKQGVVQHLLVNNLALGRSVDEI----------LRLIDALQHHEKYGDVCPANWQKG--- 174
Query: 63 IFESTFESTEGVAEYVAH 80
ES S EGVA+Y+++
Sbjct: 175 -KESMKPSEEGVAKYLSN 191
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 6 GVVKHVLLAKFKEGTAQDQIDQLIK---DYANLVNLIEPMKSFQWGKNVSIENLHQGFTH 62
G + ++ KF GT +Q D + + A + EP + V NL +G TH
Sbjct: 182 GRARRIMFEKFGSGTGGNQRDIVAEAQLPIAVVNGRDEPFVELDFVSKVKFGNLWEGKTH 241
Query: 63 IFESTFEST--EGVAEYVAHPAH 83
+ ++ + E AE+ A+ A
Sbjct: 242 VIDNAGHAPFREAPAEFDAYLAR 264
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 6 GVVKHVLLAKFKEGTAQDQIDQLIK---DYANLVNLIEPMKSFQWGKNVSIENLHQGFTH 62
G + ++ KF GT +Q D + + A + EP + V NL +G TH
Sbjct: 182 GRARRIMFEKFGSGTGGNQRDIVAEAQLPIAVVNGRDEPFVELDFVSKVKFGNLWEGKTH 241
Query: 63 IFESTFEST--EGVAEYVAHPAH 83
+ ++ + E AE+ A+ A
Sbjct: 242 VIDNAGHAPFREAPAEFDAYLAR 264
>pdb|3BGW|A Chain A, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|B Chain B, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|C Chain C, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|D Chain D, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|E Chain E, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|F Chain F, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
Length = 444
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 3 EAKGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNL 38
E+K +V+ V++AK ++G IK+Y N VNL
Sbjct: 403 ESKNIVE-VIIAKHRDGPVGTVSLAFIKEYGNFVNL 437
>pdb|1BD9|A Chain A, Human Phosphatidylethanolamine Binding Protein
pdb|1BD9|B Chain B, Human Phosphatidylethanolamine Binding Protein
pdb|1BEH|A Chain A, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|1BEH|B Chain B, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|2QYQ|A Chain A, Human Raf Kinase Inhibitor Protein (Rkip) In Complex With
O- Phosphotyrosine
pdb|2L7W|A Chain A, Solution Structure Of The Human Raf-1 Kinase Inhibitor
Protein
Length = 187
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 70 STEGVAEYVAHPAHVEYANLFLANLEKVLV---IDYKPTTV 107
S + V E HP HV YA + L KVL + +PT++
Sbjct: 13 SLQEVDEQPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSI 53
>pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain
(D1-D3)
Length = 308
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 38 LIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYA 87
++EP + WGKNVS++ L + I + ++E G + H +Y
Sbjct: 4 IVEPHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYG 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,172,749
Number of Sequences: 62578
Number of extensions: 119435
Number of successful extensions: 331
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 314
Number of HSP's gapped (non-prelim): 22
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)