Query 033887
Match_columns 109
No_of_seqs 133 out of 1021
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 12:17:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q4r_A Protein AT3G17210; cent 100.0 6.3E-38 2.2E-42 199.9 13.6 108 1-108 4-111 (112)
2 1tr0_A Stable protein 1; plant 100.0 6.5E-37 2.2E-41 194.0 14.6 104 1-104 1-107 (108)
3 2qyc_A Ferredoxin-like protein 100.0 1.2E-35 4.3E-40 186.7 13.9 101 5-107 2-102 (103)
4 3bn7_A Ferredoxin-like protein 100.0 2.2E-34 7.7E-39 185.7 14.2 100 4-104 17-119 (120)
5 3bb5_A Stress responsive alpha 100.0 2E-34 6.8E-39 186.2 13.3 101 4-104 17-121 (121)
6 3bgu_A Ferredoxin-like protein 100.0 4.1E-34 1.4E-38 183.5 13.5 100 3-104 17-116 (116)
7 1rjj_A Expressed protein; beta 100.0 4.3E-34 1.5E-38 181.8 11.8 100 5-107 3-103 (111)
8 3fmb_A Dimeric protein of unkn 100.0 3.3E-33 1.1E-37 179.7 13.2 98 4-104 17-118 (118)
9 3bde_A MLL5499 protein; stress 100.0 5E-33 1.7E-37 179.4 13.1 99 4-105 17-116 (120)
10 2ftr_A BH0200; structural geno 98.9 3E-08 1E-12 62.0 11.2 95 1-97 2-97 (108)
11 3hf5_A 4-methylmuconolactone m 98.8 2.9E-07 9.9E-12 58.4 12.9 96 5-100 8-110 (116)
12 3kg0_A Snoab; polyketide, anth 98.7 5.6E-07 1.9E-11 57.8 13.0 85 4-95 20-104 (128)
13 3kkf_A Putative antibiotic bio 98.7 4.8E-07 1.6E-11 55.7 12.1 96 3-104 1-97 (105)
14 1q8b_A Protein YJCS; structura 98.7 3.3E-07 1.1E-11 56.5 11.3 92 4-100 10-101 (105)
15 2jdj_A HAPK, REDY-like protein 98.7 4.4E-07 1.5E-11 56.4 11.5 84 10-95 4-88 (105)
16 2fb0_A Conserved hypothetical 98.7 2.1E-06 7.1E-11 51.4 13.2 88 5-98 2-89 (94)
17 1x7v_A PA3566 protein, APC5058 98.6 2.1E-06 7.1E-11 51.8 12.4 88 6-99 5-92 (99)
18 2bbe_A Hypothetical protein SO 98.6 2.5E-06 8.5E-11 52.6 11.9 88 4-97 10-98 (108)
19 3bm7_A Protein of unknown func 98.6 2.8E-06 9.5E-11 53.2 12.2 91 4-100 17-108 (115)
20 2pd1_A Hypothetical protein; u 98.6 4.5E-06 1.6E-10 50.8 12.7 84 5-96 3-86 (104)
21 2gff_A LSRG protein; dimeric a 98.6 3.2E-06 1.1E-10 51.8 11.9 84 7-96 1-84 (106)
22 3gz7_A Putative antibiotic bio 98.5 2.9E-06 9.7E-11 53.5 11.8 91 4-100 17-108 (115)
23 2omo_A DUF176; structural geno 98.5 4.9E-06 1.7E-10 52.8 12.4 87 4-96 20-106 (124)
24 4dpo_A Conserved protein; stru 98.5 2.8E-06 9.6E-11 53.7 11.1 86 5-96 23-108 (119)
25 1tuv_A Protein YGIN; menadione 98.5 1E-05 3.6E-10 50.5 12.7 91 7-97 1-95 (114)
26 3e8o_A Uncharacterized protein 98.4 1.2E-05 4.1E-10 50.6 12.8 85 5-95 17-101 (119)
27 1iuj_A Hypothetical protein TT 98.4 2.5E-06 8.6E-11 52.0 9.2 83 7-95 1-87 (106)
28 1y0h_A Hypothetical protein RV 98.4 3.4E-06 1.2E-10 51.1 9.7 85 5-96 3-87 (102)
29 2zdo_A Heme-degrading monooxyg 98.3 4.8E-06 1.6E-10 51.4 8.3 81 5-90 2-82 (109)
30 3f44_A Putative monooxygenase; 98.3 1.5E-05 5E-10 55.4 11.2 99 4-107 113-211 (220)
31 4dn9_A Antibiotic biosynthesis 98.2 4.8E-05 1.6E-09 48.2 12.1 85 4-97 20-104 (122)
32 4hl9_A Antibiotic biosynthesis 98.2 3.7E-05 1.3E-09 48.6 11.0 92 5-102 21-112 (118)
33 2ril_A Antibiotic biosynthesis 98.1 3.1E-05 1.1E-09 46.9 9.0 73 4-80 2-74 (99)
34 1sqe_A Hypothetical protein PG 98.0 1.9E-05 6.4E-10 48.7 6.9 80 6-90 1-80 (109)
35 3bf4_A Ethyl TERT-butyl ether 98.0 1.5E-05 5.1E-10 51.2 6.3 90 4-97 17-112 (127)
36 3hx9_A Protein RV3592; DI-heme 97.9 4.4E-05 1.5E-09 48.6 7.5 93 6-104 1-94 (124)
37 2go8_A Hypothetical protein YQ 97.9 5.1E-05 1.7E-09 48.4 6.7 76 5-89 11-86 (122)
38 1tz0_A Hypothetical protein; s 97.8 3.4E-05 1.2E-09 48.2 5.6 81 4-89 3-84 (114)
39 3hhl_A RPA0582; alpha-beta-bar 97.7 0.0013 4.5E-08 42.8 11.9 91 5-95 22-122 (143)
40 3fgv_A Uncharacterized protein 97.7 0.00036 1.2E-08 43.2 8.2 88 5-101 12-101 (106)
41 3tvz_A Putative uncharacterize 97.7 0.00015 5.1E-09 48.6 6.8 80 5-91 69-148 (172)
42 3lo3_A Uncharacterized conserv 97.6 0.0022 7.5E-08 38.7 11.3 82 9-95 6-87 (94)
43 3fj2_A Monooxygenase-like prot 97.5 0.0015 5.2E-08 44.3 10.4 80 6-92 84-163 (186)
44 2fiu_A Conserved hypothetical 97.4 0.0067 2.3E-07 36.9 11.6 83 8-95 6-88 (99)
45 3mcs_A Putative monooxygenase; 97.4 0.0045 1.5E-07 42.9 11.6 97 5-107 111-207 (219)
46 3f44_A Putative monooxygenase; 97.4 0.0042 1.4E-07 42.8 11.5 95 5-104 4-98 (220)
47 1lq9_A Actva-ORF6 monooxygenas 97.2 0.0012 4E-08 41.2 6.5 84 7-100 9-101 (112)
48 3mcs_A Putative monooxygenase; 97.0 0.016 5.5E-07 40.0 11.4 89 5-98 4-92 (219)
49 1vq3_A Phosphoribosylformylgly 95.4 0.068 2.3E-06 32.3 6.4 44 6-51 14-57 (94)
50 4ae5_A Signal transduction pro 95.3 0.077 2.6E-06 35.3 7.0 73 7-86 66-138 (167)
51 2dgb_A Hypothetical protein PU 93.3 0.34 1.2E-05 28.4 5.9 43 6-51 2-44 (84)
52 1gtd_A MTH169; synthetase, FGA 93.2 0.34 1.2E-05 28.4 5.9 43 7-52 2-44 (85)
53 2zw2_A Putative uncharacterize 92.7 0.37 1.3E-05 28.8 5.6 44 7-52 5-48 (92)
54 1t4a_A PURS; tetramer, complex 92.5 0.57 1.9E-05 27.4 6.2 44 7-52 1-44 (84)
55 2djw_A Probable transcriptiona 91.2 1.3 4.5E-05 25.6 7.1 57 7-79 1-57 (92)
56 2cvi_A 75AA long hypothetical 91.1 1.3 4.3E-05 25.2 8.4 57 7-79 1-57 (83)
57 2cb2_A Sulfur oxygenase reduct 90.9 3.2 0.00011 29.9 9.5 80 15-95 167-285 (318)
58 2yx5_A UPF0062 protein MJ1593; 90.5 0.42 1.4E-05 27.9 4.1 43 7-51 1-43 (83)
59 2zbc_A 83AA long hypothetical 88.7 2 6.9E-05 24.0 7.6 57 7-79 1-57 (83)
60 3i4p_A Transcriptional regulat 88.0 3.7 0.00013 26.2 8.6 59 8-79 63-121 (162)
61 2p5v_A Transcriptional regulat 87.5 3.9 0.00013 25.9 7.6 57 8-78 70-126 (162)
62 2pn6_A ST1022, 150AA long hypo 79.3 8.9 0.00031 23.8 7.3 45 22-78 75-119 (150)
63 3a16_A Oxdre, aldoxime dehydra 79.1 17 0.00059 26.9 8.8 84 7-93 233-330 (373)
64 2cyy_A Putative HTH-type trans 77.1 11 0.00037 23.5 6.7 55 8-78 67-121 (151)
65 2hiq_A Hypothetical protein YD 73.0 14 0.00047 22.8 9.5 74 6-88 8-81 (113)
66 2cg4_A Regulatory protein ASNC 71.6 15 0.00053 22.7 8.7 56 8-78 68-123 (152)
67 1tuw_A Tetracenomycin polyketi 70.1 5.5 0.00019 24.5 3.5 82 7-95 2-84 (109)
68 2e1c_A Putative HTH-type trans 67.3 22 0.00075 22.8 7.5 55 8-78 87-141 (171)
69 3gn6_A CT0912, orfan protein w 66.9 32 0.0011 24.5 10.4 84 6-96 38-147 (321)
70 3v4m_A Splicing factor U2AF 65 66.4 17 0.00059 21.3 5.6 53 20-75 20-73 (105)
71 2dbb_A Putative HTH-type trans 63.7 23 0.00079 21.8 6.7 52 11-78 72-124 (151)
72 1vqs_A Hypothetical protein AG 63.4 22 0.00075 21.4 11.0 84 6-95 12-100 (116)
73 2hgm_A HNRPF protein, heteroge 61.8 25 0.00085 21.6 5.6 56 11-79 45-102 (126)
74 1hdg_O Holo-D-glyceraldehyde-3 58.9 48 0.0016 23.9 7.8 44 6-51 237-280 (332)
75 2db1_A Heterogeneous nuclear r 55.6 16 0.00054 21.8 3.8 61 10-79 19-79 (118)
76 2dgw_A Probable RNA-binding pr 55.5 24 0.00083 19.5 5.3 56 10-78 12-67 (91)
77 3b1j_A Glyceraldehyde 3-phosph 55.4 56 0.0019 23.6 7.6 42 6-49 241-282 (339)
78 3abf_A 4-oxalocrotonate tautom 54.8 19 0.00065 18.7 3.7 27 15-41 7-33 (64)
79 1gad_O D-glyceraldehyde-3-phos 54.0 58 0.002 23.4 7.9 44 6-51 236-279 (330)
80 1vqy_A Hypothetical protein AG 53.0 35 0.0012 20.5 11.5 84 6-95 12-100 (116)
81 3cmc_O GAPDH, glyceraldehyde-3 52.7 62 0.0021 23.3 7.9 44 6-51 237-280 (334)
82 2dnn_A RNA-binding protein 12; 52.4 34 0.0012 20.2 5.6 55 11-78 19-73 (109)
83 3mb2_A 4-oxalocrotonate tautom 51.7 15 0.00051 20.0 3.0 24 14-37 6-29 (72)
84 2asy_A Protein YDHR precursor; 51.7 41 0.0014 21.0 6.6 69 6-81 23-91 (123)
85 3m20_A 4-oxalocrotonate tautom 51.1 15 0.00052 19.3 2.9 24 12-36 3-26 (62)
86 3cps_A Glyceraldehyde 3-phosph 50.8 70 0.0024 23.3 7.9 43 7-51 258-300 (354)
87 2cfx_A HTH-type transcriptiona 50.7 41 0.0014 20.6 8.2 56 8-79 65-120 (144)
88 1jmt_A Splicing factor U2AF 35 49.8 36 0.0012 19.8 6.3 46 26-76 37-83 (104)
89 2d2i_A Glyceraldehyde 3-phosph 49.8 76 0.0026 23.4 7.9 68 6-75 241-323 (380)
90 1rm4_O Glyceraldehyde 3-phosph 49.5 71 0.0024 23.1 7.8 44 7-52 240-283 (337)
91 3zzp_A TS9, ribosomal protein 49.5 25 0.00086 19.9 3.7 24 13-36 49-72 (77)
92 2lxi_A RNA-binding protein 10; 49.4 33 0.0011 19.2 5.0 56 12-77 5-60 (91)
93 3e5r_O PP38, glyceraldehyde-3- 49.0 72 0.0024 23.0 7.9 44 6-51 241-284 (337)
94 3s6e_A RNA-binding protein 39; 47.0 29 0.001 20.8 4.0 51 17-75 19-69 (114)
95 4fxv_A ELAV-like protein 1; RN 46.9 39 0.0013 19.3 6.7 55 11-76 22-76 (99)
96 2ia0_A Putative HTH-type trans 46.4 55 0.0019 20.9 7.8 56 10-78 78-137 (171)
97 2lmi_A GRSF-1, G-rich sequence 46.4 26 0.00088 20.2 3.6 61 10-79 13-73 (107)
98 1i1g_A Transcriptional regulat 46.1 47 0.0016 20.0 7.8 55 8-78 64-118 (141)
99 3bl4_A Uncharacterized protein 45.1 32 0.0011 21.2 4.0 42 9-50 19-62 (124)
100 2x5j_O E4PDH, D-erythrose-4-ph 44.9 85 0.0029 22.6 7.9 42 6-49 241-282 (339)
101 4a8x_A RNA-binding protein wit 44.8 36 0.0012 18.4 6.5 56 11-76 7-62 (88)
102 2x4k_A 4-oxalocrotonate tautom 44.1 24 0.00083 17.9 3.0 21 15-35 9-29 (63)
103 2dng_A Eukaryotic translation 43.8 43 0.0015 18.9 6.4 59 8-78 15-73 (103)
104 2fy1_A RNA-binding motif prote 42.2 51 0.0017 19.3 6.9 55 10-76 9-63 (116)
105 2opa_A Probable tautomerase YW 42.2 27 0.00093 17.8 3.0 23 14-36 5-27 (61)
106 2g82_O GAPDH, glyceraldehyde-3 42.2 94 0.0032 22.4 7.9 44 7-52 236-279 (331)
107 1u8f_O GAPDH, glyceraldehyde-3 42.0 93 0.0032 22.3 7.9 42 6-49 239-280 (335)
108 2ki2_A SS-DNA binding protein 41.6 43 0.0015 18.3 6.5 59 9-78 2-60 (90)
109 2b4r_O Glyceraldehyde-3-phosph 40.8 1E+02 0.0035 22.4 6.9 42 9-52 253-294 (345)
110 2kxn_B Transformer-2 protein h 40.5 59 0.002 19.5 5.8 55 11-76 49-103 (129)
111 1otf_A 4-oxalocrotonate tautom 39.4 32 0.0011 17.5 3.0 21 15-35 6-26 (62)
112 3ry0_A Putative tautomerase; o 39.1 43 0.0015 17.5 4.0 25 12-36 3-27 (65)
113 1g6u_A Domain swapped dimer; d 38.8 19 0.00066 18.0 1.8 21 17-37 14-34 (48)
114 3s8s_A Histone-lysine N-methyl 38.8 58 0.002 19.0 6.2 57 9-76 7-63 (110)
115 1s79_A Lupus LA protein; RRM, 38.3 58 0.002 18.8 7.9 57 11-79 14-70 (103)
116 2ywk_A Putative RNA-binding pr 36.8 54 0.0018 18.0 5.7 56 10-77 18-73 (95)
117 3m21_A Probable tautomerase HP 36.7 37 0.0013 18.0 3.0 25 12-36 3-30 (67)
118 2rs2_A Musashi-1, RNA-binding 35.3 65 0.0022 18.5 6.9 58 10-78 27-84 (109)
119 2pv1_A Chaperone SURA; surviVa 35.2 55 0.0019 18.8 3.8 21 8-29 5-25 (103)
120 2do4_A Squamous cell carcinoma 35.0 61 0.0021 18.1 6.0 55 11-77 20-74 (100)
121 2cpf_A RNA binding motif prote 35.0 60 0.002 18.0 6.3 57 11-77 8-66 (98)
122 3ej9_A Alpha-subunit of trans- 34.9 39 0.0013 18.6 3.0 22 15-36 7-28 (76)
123 1u6f_A Tcubp1, RNA-binding pro 34.8 73 0.0025 19.0 6.3 57 9-76 43-99 (139)
124 1gyx_A YDCE, B1461, hypothetic 34.6 48 0.0016 18.0 3.3 25 12-36 3-28 (76)
125 1uaw_A Mouse-musashi-1; RNP-ty 34.5 52 0.0018 17.2 4.2 55 13-78 5-59 (77)
126 2pe8_A Splicing factor 45; RRM 34.2 70 0.0024 18.6 5.2 45 28-75 26-70 (105)
127 1wi8_A EIF-4B, eukaryotic tran 34.1 65 0.0022 18.1 6.6 59 9-78 16-74 (104)
128 2lkz_A RNA-binding protein 5; 34.0 26 0.0009 20.1 2.2 57 11-76 12-68 (95)
129 2xs2_A Deleted in azoospermia- 33.6 65 0.0022 18.0 6.3 61 7-79 8-68 (102)
130 2kjw_A TS9, 30S ribosomal prot 33.5 55 0.0019 19.3 3.6 28 13-40 49-76 (96)
131 2div_A TRNA selenocysteine ass 33.4 64 0.0022 17.9 5.2 59 8-77 9-68 (99)
132 1wg5_A Heterogeneous nuclear r 33.1 69 0.0024 18.2 6.0 58 11-80 18-76 (104)
133 2d9p_A Polyadenylate-binding p 33.0 67 0.0023 18.0 5.1 56 9-77 16-71 (103)
134 2khc_A Testis-specific RNP-typ 32.4 74 0.0025 18.3 5.8 57 9-76 41-97 (118)
135 3pgw_S U1-70K; protein-RNA com 32.3 1.5E+02 0.0052 21.9 6.7 57 9-76 103-159 (437)
136 1iqt_A AUF1, heterogeneous nuc 31.5 59 0.002 16.9 5.0 54 15-79 6-59 (75)
137 2dgo_A Cytotoxic granule-assoc 31.3 77 0.0026 18.1 6.4 59 8-77 15-73 (115)
138 2mss_A Protein (musashi1); RNA 31.0 61 0.0021 16.9 6.4 55 13-78 4-58 (75)
139 1h2v_Z 20 kDa nuclear CAP bind 30.3 95 0.0033 18.9 5.9 58 9-77 40-97 (156)
140 2cpz_A CUG triplet repeat RNA- 30.3 81 0.0028 18.1 5.2 57 10-77 27-83 (115)
141 3ulh_A THO complex subunit 4; 30.1 77 0.0026 17.8 7.1 56 9-76 30-85 (107)
142 2dnm_A SRP46 splicing factor; 29.8 77 0.0026 17.7 5.9 57 9-76 14-70 (103)
143 3mgj_A Uncharacterized protein 29.8 1E+02 0.0034 19.0 5.0 40 21-60 57-96 (118)
144 3bs9_A Nucleolysin TIA-1 isofo 29.6 70 0.0024 17.1 6.2 58 9-77 7-64 (87)
145 1mwq_A Hypothetical protein HI 29.4 83 0.0028 18.0 6.6 75 7-85 3-86 (101)
146 1l6x_B Minimized B-domain of p 29.1 54 0.0018 15.7 2.7 16 18-33 16-31 (34)
147 3fxd_A Protein ICMQ; helix bun 29.0 45 0.0016 17.9 2.3 18 17-34 2-19 (57)
148 3p5t_L Cleavage and polyadenyl 28.9 76 0.0026 17.3 4.3 53 15-76 8-60 (90)
149 2cqc_A Arginine/serine-rich sp 28.4 77 0.0026 17.3 6.6 56 10-76 17-72 (95)
150 1whw_A Hypothetical protein ri 28.3 80 0.0027 17.4 7.8 57 9-76 9-65 (99)
151 3q2s_C Cleavage and polyadenyl 28.3 1.3E+02 0.0045 19.9 6.2 56 11-77 71-128 (229)
152 1p27_B RNA-binding protein 8A; 28.2 84 0.0029 17.6 6.7 58 9-77 24-81 (106)
153 2cqb_A Peptidyl-prolyl CIS-tra 28.2 82 0.0028 17.5 5.0 57 10-77 14-70 (102)
154 3s7r_A Heterogeneous nuclear r 28.2 75 0.0026 17.1 6.0 59 9-78 12-70 (87)
155 3ns6_A Eukaryotic translation 28.0 85 0.0029 17.6 6.8 55 18-76 15-69 (100)
156 4a5o_A Bifunctional protein fo 28.0 99 0.0034 21.9 4.7 32 10-42 66-97 (286)
157 3l07_A Bifunctional protein fo 27.8 1E+02 0.0034 21.9 4.7 32 10-42 65-96 (285)
158 3p2o_A Bifunctional protein fo 27.7 1.1E+02 0.0036 21.8 4.8 32 10-42 64-95 (285)
159 4a26_A Putative C-1-tetrahydro 27.5 1E+02 0.0034 22.0 4.7 32 10-42 68-99 (300)
160 3fst_A 5,10-methylenetetrahydr 27.5 1.3E+02 0.0044 21.4 5.3 42 11-52 24-65 (304)
161 2cqg_A TDP-43, TAR DNA-binding 27.4 86 0.003 17.5 5.9 59 10-79 17-75 (103)
162 3ggz_E Vacuolar protein-sortin 27.2 49 0.0017 15.3 2.0 17 20-36 12-28 (29)
163 2cq4_A RNA binding motif prote 26.5 96 0.0033 17.7 6.7 56 10-76 27-82 (114)
164 3ex7_B RNA-binding protein 8A; 26.3 1E+02 0.0035 17.9 7.7 57 9-76 23-79 (126)
165 2dh8_A DAZ-associated protein 26.1 93 0.0032 17.4 5.7 57 10-77 18-74 (105)
166 2cqd_A RNA-binding region cont 25.9 1E+02 0.0034 17.7 7.8 61 8-79 17-77 (116)
167 2w25_A Probable transcriptiona 25.8 1.2E+02 0.004 18.4 6.7 54 9-78 68-122 (150)
168 2dha_A FLJ20171 protein; RRM d 25.7 47 0.0016 20.1 2.4 60 11-79 26-86 (123)
169 2dnh_A Bruno-like 5, RNA bindi 25.7 94 0.0032 17.3 6.0 57 9-77 16-72 (105)
170 1v5i_B POIA1, IA-1=serine prot 25.7 89 0.003 17.1 3.9 54 14-81 7-60 (76)
171 1ftr_A FTR, formylmethanofuran 25.6 1.6E+02 0.0054 21.1 5.3 40 6-50 241-281 (296)
172 1m5s_A Formylmethanofuran--tet 25.6 1.6E+02 0.0054 21.1 5.3 40 6-50 242-282 (297)
173 3ids_C GAPDH, glyceraldehyde-3 25.5 2E+02 0.0069 21.1 6.1 40 11-52 259-298 (359)
174 1m5h_A Formylmethanofuran--tet 25.5 1.6E+02 0.0054 21.1 5.3 40 6-50 242-282 (297)
175 1cqm_A Ribosomal protein S6; a 25.4 1.1E+02 0.0036 17.9 5.9 39 13-51 7-47 (101)
176 2j5a_A 30S ribosomal protein S 25.3 1.1E+02 0.0039 18.1 5.5 39 13-51 13-53 (110)
177 3mdf_A Peptidyl-prolyl CIS-tra 25.1 85 0.0029 16.6 6.3 56 10-76 9-64 (85)
178 3ue2_A Poly(U)-binding-splicin 25.1 1.1E+02 0.0036 18.3 4.0 46 27-75 37-85 (118)
179 3ucg_A Polyadenylate-binding p 25.1 87 0.003 16.8 6.4 57 11-78 9-65 (89)
180 2x1f_A MRNA 3'-END-processing 25.0 94 0.0032 17.1 7.1 55 12-77 6-60 (96)
181 2e5h_A Zinc finger CCHC-type a 24.9 92 0.0031 16.9 6.4 56 11-77 19-74 (94)
182 2hgl_A HNRPF protein, heteroge 24.7 1.2E+02 0.0041 18.5 4.3 60 11-79 47-106 (136)
183 2dnz_A Probable RNA-binding pr 24.6 93 0.0032 16.9 7.1 57 10-77 7-63 (95)
184 2cy5_A Epidermal growth factor 24.5 63 0.0021 20.5 2.8 35 1-35 5-40 (140)
185 2jwn_A Embryonic polyadenylate 24.5 1.1E+02 0.0037 17.7 8.0 58 10-78 38-95 (124)
186 2jsx_A Protein NAPD; TAT, proo 24.5 83 0.0028 18.4 3.2 25 26-51 54-78 (95)
187 2qlw_A RHAU; mutarotase, isome 24.5 1.4E+02 0.0048 19.0 8.9 83 4-95 38-125 (144)
188 2cpy_A RNA-binding protein 12; 24.4 1.1E+02 0.0037 17.6 5.1 58 10-79 17-75 (114)
189 2c2x_A Methylenetetrahydrofola 24.4 1.3E+02 0.0045 21.2 4.8 32 10-42 63-94 (281)
190 2hgn_A Heterogeneous nuclear r 24.3 1.1E+02 0.0037 18.9 4.0 53 13-78 51-103 (139)
191 3n9u_C Cleavage and polyadenyl 24.1 1.3E+02 0.0046 18.6 6.7 56 10-76 57-114 (156)
192 1x4h_A RNA-binding protein 28; 24.1 1E+02 0.0036 17.3 7.2 57 9-76 16-72 (111)
193 1fxl_A Paraneoplastic encephal 24.0 1.2E+02 0.0041 18.0 6.3 57 11-78 5-61 (167)
194 3c6v_A Probable tautomerase/de 24.0 1.4E+02 0.0047 19.1 4.5 27 6-35 22-49 (161)
195 3md3_A Nuclear and cytoplasmic 23.7 1.2E+02 0.0042 18.0 6.6 56 11-78 3-58 (166)
196 1x5u_A Splicing factor 3B subu 23.4 1.1E+02 0.0036 17.1 7.5 59 9-78 16-74 (105)
197 2jrs_A RNA-binding protein 39; 23.3 1.1E+02 0.0039 17.4 7.4 59 8-77 26-84 (108)
198 1b7f_A Protein (SXL-lethal pro 23.3 1.3E+02 0.0044 18.0 6.7 58 10-78 5-62 (168)
199 1f1f_A Cytochrome C6; heme, pr 23.3 72 0.0025 17.1 2.7 22 16-37 65-86 (89)
200 1obf_O Glyceraldehyde 3-phosph 23.2 2.2E+02 0.0074 20.6 7.9 41 10-52 244-284 (335)
201 2hzc_A Splicing factor U2AF 65 23.2 95 0.0033 16.5 6.9 58 10-77 8-69 (87)
202 1vmb_A 30S ribosomal protein S 23.1 1.5E+02 0.005 18.6 5.9 39 13-51 24-65 (140)
203 2voo_A Lupus LA protein; RNA-b 22.9 1.6E+02 0.0054 18.9 6.3 57 11-79 112-168 (193)
204 1vr6_A Phospho-2-dehydro-3-deo 22.8 1.4E+02 0.0047 21.8 4.8 27 9-35 10-36 (350)
205 3md1_A Nuclear and cytoplasmic 22.8 95 0.0032 16.4 6.9 55 11-76 4-58 (83)
206 2lea_A Serine/arginine-rich sp 22.6 1.3E+02 0.0046 18.0 4.7 58 10-78 49-106 (135)
207 2j76_E EIF-4B, EIF4B, eukaryot 22.6 1.1E+02 0.0038 17.0 4.4 59 9-78 20-78 (100)
208 1gdv_A Cytochrome C6; RED ALGA 22.4 84 0.0029 16.6 2.9 21 17-37 62-82 (85)
209 1a4i_A Methylenetetrahydrofola 22.4 1.5E+02 0.0052 21.1 4.8 32 10-42 66-97 (301)
210 2ku7_A MLL1 PHD3-CYP33 RRM chi 22.4 1.3E+02 0.0043 17.7 6.7 58 9-77 64-121 (140)
211 3ph2_B Cytochrome C6; photosyn 22.3 77 0.0026 16.8 2.7 21 17-37 63-83 (86)
212 3dr0_A Cytochrome C6; photosyn 22.3 76 0.0026 17.0 2.7 22 16-37 68-89 (93)
213 2dgs_A DAZ-associated protein 22.2 1.1E+02 0.0038 16.9 6.9 59 9-78 11-69 (99)
214 2dhg_A TRNA selenocysteine ass 22.1 1.1E+02 0.0038 17.0 6.6 57 10-77 11-67 (104)
215 4f25_A Polyadenylate-binding p 22.0 1.2E+02 0.0043 17.4 5.5 54 11-77 8-61 (115)
216 3ngj_A Deoxyribose-phosphate a 21.9 1.1E+02 0.0039 21.0 4.0 27 6-35 29-55 (239)
217 2cph_A RNA binding motif prote 21.6 1.2E+02 0.004 16.9 7.3 59 9-77 16-74 (107)
218 2do0_A HnRNP M, heterogeneous 21.5 1.2E+02 0.0042 17.1 6.0 55 10-76 17-71 (114)
219 3ndo_A Deoxyribose-phosphate a 21.4 91 0.0031 21.3 3.4 27 6-35 15-41 (231)
220 1x4b_A Heterogeneous nuclear r 21.3 1.3E+02 0.0043 17.2 6.8 59 10-79 29-87 (116)
221 2lqj_A Mg2+ transport protein; 21.1 1.3E+02 0.0045 17.4 4.0 25 21-49 63-87 (94)
222 2kt5_A RNA and export factor-b 20.9 1.3E+02 0.0046 17.4 7.5 56 9-76 36-91 (124)
223 3bv4_A Fructose-bisphosphate a 20.8 99 0.0034 22.6 3.6 18 33-50 255-272 (341)
224 2f3j_A RNA and export factor b 20.7 1.7E+02 0.0058 18.5 7.5 56 9-76 89-144 (177)
225 1p1t_A Cleavage stimulation fa 20.7 1.2E+02 0.0041 16.8 5.7 56 11-77 11-66 (104)
226 3zrg_A Pexrd2, pexrd2 family s 20.6 1.2E+02 0.0039 16.8 3.0 21 70-90 38-58 (67)
227 4ayb_H DNA-directed RNA polyme 20.5 1.2E+02 0.0041 17.4 3.3 29 9-44 19-47 (84)
228 1oo0_B CG8781-PA, drosophila Y 20.5 1.3E+02 0.0043 17.0 6.4 57 9-76 27-83 (110)
229 3mbd_A Fructose-bisphosphate a 20.5 95 0.0033 22.7 3.4 68 20-87 239-319 (342)
230 3mlc_A FG41 malonate semialdeh 20.2 1.6E+02 0.0055 18.0 4.5 32 7-42 66-97 (136)
No 1
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=100.00 E-value=6.3e-38 Score=199.92 Aligned_cols=108 Identities=76% Similarity=1.222 Sum_probs=98.6
Q ss_pred CCCCCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcC
Q 033887 1 MEEAKGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAH 80 (109)
Q Consensus 1 m~~~~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~h 80 (109)
|++.++||+|||+||||+++++++++++++.+.+|++.||||+++++|+|.+++++++|||++++++|+|.++|++|+.|
T Consensus 4 m~~~~~mi~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~~h 83 (112)
T 1q4r_A 4 MEEAKGPVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIAH 83 (112)
T ss_dssp ------CEEEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHHHS
T ss_pred ccCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHhCC
Confidence 88889999999999999999999999999999999999999999999999998778899999999999999999999999
Q ss_pred hhHHHHHHHHhhhhcceEEEEeecCeee
Q 033887 81 PAHVEYANLFLANLEKVLVIDYKPTTVR 108 (109)
Q Consensus 81 p~H~~~~~~~~p~~~~~~~~D~~~~~~~ 108 (109)
|+|+++++.++|++++++++||+.+++.
T Consensus 84 P~H~~~~~~~~~~~~~~~v~D~~~~~~~ 111 (112)
T 1q4r_A 84 PAHVEFATIFLGSLDKVLVIDYKPTSVS 111 (112)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEECCCCSC
T ss_pred HHHHHHHHHHHHHhcCcEEEeeeccccc
Confidence 9999999999999999999999998864
No 2
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=100.00 E-value=6.5e-37 Score=193.99 Aligned_cols=104 Identities=47% Similarity=0.825 Sum_probs=97.7
Q ss_pred CCCCCC-eEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCcc--ccCCCccEEEEEEECCHHhHHHh
Q 033887 1 MEEAKG-VVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIE--NLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 1 m~~~~~-mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~--~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
|++.++ ||+|||+||||+++++++++++++.+.+|++.||||+++++|+|.+++ ++++|||++++++|+|.++|++|
T Consensus 1 m~~~~~~mi~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y 80 (108)
T 1tr0_A 1 MATRTPKLVKHTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQEY 80 (108)
T ss_dssp --CCCCCCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHHH
T ss_pred CCCCCCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHHH
Confidence 887655 999999999999999999999999999999999999999999999976 78899999999999999999999
Q ss_pred hcChhHHHHHHHHhhhhcceEEEEeec
Q 033887 78 VAHPAHVEYANLFLANLEKVLVIDYKP 104 (109)
Q Consensus 78 ~~hp~H~~~~~~~~p~~~~~~~~D~~~ 104 (109)
+.||+|+++++.++|++++++++||+.
T Consensus 81 ~~hP~H~~~~~~~~~~~~~~~v~D~~~ 107 (108)
T 1tr0_A 81 LDSAALAAFAEGFLPTLSQRLVIDYFL 107 (108)
T ss_dssp HTCHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hCCHHHHHHHHHHHHHhCCcEEEEEEe
Confidence 999999999999999999999999985
No 3
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=100.00 E-value=1.2e-35 Score=186.66 Aligned_cols=101 Identities=22% Similarity=0.373 Sum_probs=96.4
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHH
Q 033887 5 KGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHV 84 (109)
Q Consensus 5 ~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~ 84 (109)
++||+|||+||||+++++++++++++.+.+|++.||||+++++|+|.++ +++|||++++++|+|.++|++|+.||+|+
T Consensus 2 ~~Mi~HiVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~--~~~~~~~~~~~~F~s~e~l~~Y~~hP~H~ 79 (103)
T 2qyc_A 2 MTMFLHVVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVAA--RSQGYTHATSSAFVDAAAHDAYQVCPAHV 79 (103)
T ss_dssp CEEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCCT--TCTTCCEEEEEEESSHHHHHHHTTCHHHH
T ss_pred CceEEEEEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCCC--CCCCccEEEEEEECCHHHHHHHhCCHHHH
Confidence 5699999999999999999999999999999999999999999999984 78899999999999999999999999999
Q ss_pred HHHHHHhhhhcceEEEEeecCee
Q 033887 85 EYANLFLANLEKVLVIDYKPTTV 107 (109)
Q Consensus 85 ~~~~~~~p~~~~~~~~D~~~~~~ 107 (109)
++.+.++|++++++++||+.+++
T Consensus 80 ~~~~~~~~~~~~~~v~D~~~~~~ 102 (103)
T 2qyc_A 80 AMKAFMGPRIKRVVVYDGEVPAI 102 (103)
T ss_dssp HHHHHHGGGEEEEEEEEEEEECC
T ss_pred HHHHHHHHHhcCcEEEEEecCCc
Confidence 99889999999999999998754
No 4
>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}
Probab=100.00 E-value=2.2e-34 Score=185.67 Aligned_cols=100 Identities=20% Similarity=0.244 Sum_probs=94.2
Q ss_pred CCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCcc---ccCCCccEEEEEEECCHHhHHHhhcC
Q 033887 4 AKGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIE---NLHQGFTHIFESTFESTEGVAEYVAH 80 (109)
Q Consensus 4 ~~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~---~~~~~~~~~~~~~F~s~e~l~~Y~~h 80 (109)
.++||+|||+||||+++++++++++++++++|+ .||||+++++|+|.+++ ++++|||++++++|+|.+++++|+.|
T Consensus 17 ~~~mi~HIVlfklK~~~~~~~~~~~~~~l~~L~-~Ip~i~~~~vG~~~s~e~R~~~~~g~d~~l~~~F~s~edl~~Y~~H 95 (120)
T 3bn7_A 17 FQGMLFHQVFFWLKNPGDKADRDKLIAGLKALK-AIDVIQQLHVGVPAATEKRDVVDNSYDVSELMVFKSVEDQKRYRDH 95 (120)
T ss_dssp --CCEEEEEEEEESSTTCHHHHHHHHHHHHGGG-GSTTCSEEEEECCCCCCCCTTCCCCCSEEEEEEESSHHHHHHHHTC
T ss_pred CCCcEEEEEEEEECCCCCHHHHHHHHHHHHhcc-CCCCeEEEEEccCCCcccccccCCCccEEEEEEECCHHHHHHHhCC
Confidence 478999999999999999999999999999999 89999999999999874 56899999999999999999999999
Q ss_pred hhHHHHHHHHhhhhcceEEEEeec
Q 033887 81 PAHVEYANLFLANLEKVLVIDYKP 104 (109)
Q Consensus 81 p~H~~~~~~~~p~~~~~~~~D~~~ 104 (109)
|+|+++++.++|++++++++||+.
T Consensus 96 P~H~~~~~~~~p~~e~~~v~D~~~ 119 (120)
T 3bn7_A 96 PLLQKFVADCSHLWSKVVVYDSMS 119 (120)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhccEEEEEEee
Confidence 999999999999999999999975
No 5
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=100.00 E-value=2e-34 Score=186.15 Aligned_cols=101 Identities=21% Similarity=0.377 Sum_probs=95.9
Q ss_pred CCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhH
Q 033887 4 AKGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAH 83 (109)
Q Consensus 4 ~~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H 83 (109)
.++||+||||||||+++++++++++++.+.+|+++||||+++++|+|.++++++++||++++++|+|.++|++|+.||+|
T Consensus 17 ~~~mi~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~~hP~H 96 (121)
T 3bb5_A 17 FQGMLYHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYAVHPTH 96 (121)
T ss_dssp --CCEEEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHHHSHHH
T ss_pred CCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHHcCHhH
Confidence 36899999999999999999999999999999999999999999999998778899999999999999999999999999
Q ss_pred HHHHHHHhhhh----cceEEEEeec
Q 033887 84 VEYANLFLANL----EKVLVIDYKP 104 (109)
Q Consensus 84 ~~~~~~~~p~~----~~~~~~D~~~ 104 (109)
+++.+.++|++ ++++++||++
T Consensus 97 ~~~~~~~~p~~~gg~~~~~v~D~~~ 121 (121)
T 3bb5_A 97 QRAGGMLVASCRNGADGILVVDLEV 121 (121)
T ss_dssp HHHHHHHHHTBTTGGGGEEEEEEEC
T ss_pred HHHHHHHHHHhCcCcCCEEEEeEEC
Confidence 99999999999 9999999984
No 6
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=100.00 E-value=4.1e-34 Score=183.46 Aligned_cols=100 Identities=16% Similarity=0.382 Sum_probs=95.5
Q ss_pred CCCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChh
Q 033887 3 EAKGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPA 82 (109)
Q Consensus 3 ~~~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~ 82 (109)
..++||+|||+||||+++++++++++++.+++|++.||||+++++|+|.++ +++|||++++++|+|.+++++|+.||+
T Consensus 17 ~~~~mI~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~--~~~g~d~~l~~~F~s~edl~~Y~~hP~ 94 (116)
T 3bgu_A 17 FQGMGIRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLGL--AAGNYDFAVVADLDGEDGFRAYQDHPD 94 (116)
T ss_dssp CSSCEEEEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCSC--STTCCSEEEEEEEEHHHHHHHHHHSHH
T ss_pred cCCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCC--CCCCeeEEEEEEECCHHHHHHHhcCHH
Confidence 357899999999999999999999999999999999999999999999984 788999999999999999999999999
Q ss_pred HHHHHHHHhhhhcceEEEEeec
Q 033887 83 HVEYANLFLANLEKVLVIDYKP 104 (109)
Q Consensus 83 H~~~~~~~~p~~~~~~~~D~~~ 104 (109)
|+++.+.++|++++++++||+.
T Consensus 95 H~~~~~~~~p~~~~~~v~D~~i 116 (116)
T 3bgu_A 95 HRAALAIIAPMLADRVAVQFAL 116 (116)
T ss_dssp HHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHHHHHHHHHHhCceEEEEEEC
Confidence 9999999999999999999984
No 7
>1rjj_A Expressed protein; beta barrel, homodimer, structural genomics, protein structure initiative, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: d.58.4.4
Probab=100.00 E-value=4.3e-34 Score=181.84 Aligned_cols=100 Identities=40% Similarity=0.789 Sum_probs=94.4
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeecc-CccccCCCccEEEEEEECCHHhHHHhhcChhH
Q 033887 5 KGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNV-SIENLHQGFTHIFESTFESTEGVAEYVAHPAH 83 (109)
Q Consensus 5 ~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~-~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H 83 (109)
++||+|||+||||+++ +++++++.+++|+++||||+++++|+|. +++++++|||++++++|+|.+++++|+.||+|
T Consensus 3 ~~Mi~HiVlfklk~~~---~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~l~~~F~s~e~l~~Y~~hP~H 79 (111)
T 1rjj_A 3 TSGFKHLVVVKFKEDT---KVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLH 79 (111)
T ss_dssp SSEEEEEEEEECSSCC---CHHHHHHHHHHHHGGGGGSCEEEEEEECCSCTTTSTTCCEEEEEEESSHHHHHHHHTSHHH
T ss_pred CCcEEEEEEEEECCcc---hHHHHHHHHHHHHhcCCceEEEEEcCCCCCccccCCCccEEEEEEECCHHHHHHHhCCHHH
Confidence 4599999999999998 5789999999999999999999999999 88778899999999999999999999999999
Q ss_pred HHHHHHHhhhhcceEEEEeecCee
Q 033887 84 VEYANLFLANLEKVLVIDYKPTTV 107 (109)
Q Consensus 84 ~~~~~~~~p~~~~~~~~D~~~~~~ 107 (109)
+++++.++|++++++++||+..++
T Consensus 80 ~~~~~~~~~~~~~~~v~D~~~~~~ 103 (111)
T 1rjj_A 80 VEFSAAFTAVIDKIVLLDFPVAAV 103 (111)
T ss_dssp HHHHHHHHHTCSEEEEEEEEECTT
T ss_pred HHHHHHHHHHhcceEEEEeEccee
Confidence 999999999999999999998764
No 8
>3fmb_A Dimeric protein of unknown function and ferredoxi fold; YP_212648.1, stress responsive A/B barrel domain; HET: MSE; 1.85A {Bacteroides fragilis}
Probab=100.00 E-value=3.3e-33 Score=179.72 Aligned_cols=98 Identities=21% Similarity=0.373 Sum_probs=90.7
Q ss_pred CCCeEEEEEEEEeCCCCCHHHHH----HHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhc
Q 033887 4 AKGVVKHVLLAKFKEGTAQDQID----QLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 79 (109)
Q Consensus 4 ~~~mi~HiVlf~~k~~~~~~~~~----~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~ 79 (109)
..+||+|||+||||+++++++++ ++.+.+.+|++.||||+++++|+|.++ ++|||++++++|+|.+++++|+.
T Consensus 17 ~~~mI~HIVlfklK~~~~~~~~~~~~~~~~~~l~~L~~~IP~i~~~~vG~~~s~---~~~yd~~l~~~F~s~e~l~~Y~~ 93 (118)
T 3fmb_A 17 FQGMVKHIVLFKLRDDVPVEEKLVVMNSFKEAIEALPAKISVIRKIEVGLNMNP---GETWNIALYSEFDNLDDVKFYAT 93 (118)
T ss_dssp CCSCEEEEEEEEECTTSCHHHHHHHHHHHHHHHHTGGGTCTTCSEEEEEECCCT---TCCCCEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhhccCCCeEEEEEeccCCC---CCCceEEEEEEECCHHHHHHHhC
Confidence 46899999999999999999864 445789999999999999999999985 56999999999999999999999
Q ss_pred ChhHHHHHHHHhhhhcceEEEEeec
Q 033887 80 HPAHVEYANLFLANLEKVLVIDYKP 104 (109)
Q Consensus 80 hp~H~~~~~~~~p~~~~~~~~D~~~ 104 (109)
||+|+++++.++|++++++++||++
T Consensus 94 HP~H~~~~~~~~p~~e~~~vvDye~ 118 (118)
T 3fmb_A 94 HPEHVAAGKILAETKESRACVDYEF 118 (118)
T ss_dssp SHHHHHHHHTTTTTEEEEEEEEEEC
T ss_pred CHhHHHHHHHHHHhhcccEEEEEEC
Confidence 9999999999999999999999984
No 9
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=100.00 E-value=5e-33 Score=179.36 Aligned_cols=99 Identities=21% Similarity=0.435 Sum_probs=92.9
Q ss_pred CCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhH
Q 033887 4 AKGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAH 83 (109)
Q Consensus 4 ~~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H 83 (109)
.++||+|||+||||+++++++++++++.+++|++.||||+++++|+|.++ +++ ||++++++|+|.+++++|+.||+|
T Consensus 17 ~~~mI~HIVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~--~~~-~d~~l~~~F~s~edl~~Y~~HP~H 93 (120)
T 3bde_A 17 FQGMIRHTVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISP--KID-YHFGFSMEFADQAAYTRYNDHPDH 93 (120)
T ss_dssp -CCCEEEEEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCS--SSC-CCEEEEEEESSHHHHHHHHTSHHH
T ss_pred CCCcEEEEEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCC--CCC-ccEEEEEEECCHHHHHHHhCCHHH
Confidence 36899999999999999999999999999999999999999999999986 444 999999999999999999999999
Q ss_pred HHHH-HHHhhhhcceEEEEeecC
Q 033887 84 VEYA-NLFLANLEKVLVIDYKPT 105 (109)
Q Consensus 84 ~~~~-~~~~p~~~~~~~~D~~~~ 105 (109)
++++ +.++|++++++++||+..
T Consensus 94 ~~~v~~~~~p~~e~~~vvD~e~~ 116 (120)
T 3bde_A 94 VAFVRDRWVPEVEKFLEIDYVPL 116 (120)
T ss_dssp HHHHHHTHHHHEEEEEEEEECCC
T ss_pred HHHHHHHHHHHhccEEEEEEEEe
Confidence 9995 799999999999999874
No 10
>2ftr_A BH0200; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.40A {Bacillus halodurans} SCOP: d.58.4.15
Probab=98.92 E-value=3e-08 Score=61.99 Aligned_cols=95 Identities=15% Similarity=0.126 Sum_probs=73.0
Q ss_pred CCCCCCeEEEEEEEEeCCCCCHHHHHHHH-HHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhc
Q 033887 1 MEEAKGVVKHVLLAKFKEGTAQDQIDQLI-KDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 79 (109)
Q Consensus 1 m~~~~~mi~HiVlf~~k~~~~~~~~~~~~-~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~ 79 (109)
|...++||+.+|+++-+++ .++.++.- +.-..|..++||++++.+.......+...+|+.+..+.|+|.+++++...
T Consensus 2 ~~~~~~Mik~~vly~~~~~--~e~F~~yy~~~H~PL~~~~pgl~~y~~~~~~~~~~~~~~yd~iael~fds~ea~~aa~~ 79 (108)
T 2ftr_A 2 MKGENMMVKLIALYEQPED--KQAFDEHYFNTHAPLTRKIPGLRDMKVTRIVGSPMGESKFYLMCEMYYDDHESLQQAMR 79 (108)
T ss_dssp ---CCEEEEEEEEEECCSC--HHHHHHHHHHTHHHHHTTSTTCCEEEEEEEEEBTTBCCSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCCceEEEEEEEeCCCC--HHHHHHHHHHhhHHHHhhCCCceEEEEEeccCCCCCCCCeeEEEEEEECCHHHHHHHHc
Confidence 4455679999999997765 55555543 45567778899999998887654223456899999999999999999999
Q ss_pred ChhHHHHHHHHhhhhcce
Q 033887 80 HPAHVEYANLFLANLEKV 97 (109)
Q Consensus 80 hp~H~~~~~~~~p~~~~~ 97 (109)
+|+-+++.+....+.+..
T Consensus 80 s~e~~~~~~D~~~F~d~~ 97 (108)
T 2ftr_A 80 TDEGKASGKDAMKFAGKL 97 (108)
T ss_dssp SHHHHHHHHHHHHHTGGG
T ss_pred CHhHHHHHHHHHHhcCCC
Confidence 998888888877777643
No 11
>3hf5_A 4-methylmuconolactone methylisomerase; ferredoxin, ferredoxin-like fold, beta-barrel, biodegradation, ortho- cleavage; HET: 3ML; 1.40A {Pseudomonas reinekei} SCOP: d.58.4.19 PDB: 3hds_A* 3hfk_A* 2ifx_A*
Probab=98.80 E-value=2.9e-07 Score=58.38 Aligned_cols=96 Identities=9% Similarity=0.019 Sum_probs=77.5
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCc-ccc-----C-CCccEEEEEEECCHHhHHHh
Q 033887 5 KGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSI-ENL-----H-QGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 5 ~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~-~~~-----~-~~~~~~~~~~F~s~e~l~~Y 77 (109)
..||+.+.+++=|++.|.|+..+.-..-..|...+||++.+......+. .+. + ..||-+..+.|+|.+++++.
T Consensus 8 ~rMiKli~ll~Rk~gmS~EeF~~~w~~Hapla~~lpGl~~Y~q~~v~~~~~~~~~~~~~~~~~DgiaElwF~d~ea~~aa 87 (116)
T 3hf5_A 8 GRMIRILYLLVKPESMSHEQFRKECVVHFQMSAGMPGLHKYEVRLVAGNPTDTHVPYLDVGRIDAIGECWFASEEQYQVY 87 (116)
T ss_dssp HTSEEEEEEEECCTTSCHHHHHHHHHHHHHHTTTCTTCSEEEEEEEEECCCCCSSCBCCCCCCCEEEEEEESSHHHHHHH
T ss_pred CceEEEEEEEecCCCcCHHHHHHHHHHHHHHHHhCcCCccEEEEEEecCCCCCCCCcCCCCCcCEEEEEEECCHHHHHHH
Confidence 4799999999999999999875544466788888999998876554321 111 1 28999999999999999999
Q ss_pred hcChhHHHHHHHHhhhhcceEEE
Q 033887 78 VAHPAHVEYANLFLANLEKVLVI 100 (109)
Q Consensus 78 ~~hp~H~~~~~~~~p~~~~~~~~ 100 (109)
..+|+.+++.+........+..+
T Consensus 88 ~~sp~~~a~~~d~~~F~~~i~~~ 110 (116)
T 3hf5_A 88 MESDIRKAWFEHGKYFIGQLKPF 110 (116)
T ss_dssp HHCHHHHHHHHHHHHHCSEEEEE
T ss_pred hCCHHHHHHHhhHHHhhhhhhhe
Confidence 99999999999888888766554
No 12
>3kg0_A Snoab; polyketide, anthracycline, oxygenase, cofactor-independent, oxidoreductase; 1.70A {Streptomyces nogalater} PDB: 3kg1_A 3kng_A
Probab=98.75 E-value=5.6e-07 Score=57.80 Aligned_cols=85 Identities=8% Similarity=0.023 Sum_probs=70.9
Q ss_pred CCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhH
Q 033887 4 AKGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAH 83 (109)
Q Consensus 4 ~~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H 83 (109)
..+||.=|..|+++++ .++..+..+.+..+....||-+++.+-++... .-.+.++..|+|.++++++..+|.+
T Consensus 20 ~~~mi~via~~~V~pg--~~~f~~~~~~~~~~~~~~pGfi~~~L~r~~~~-----p~~yv~~~~W~s~ea~~a~~~S~~f 92 (128)
T 3kg0_A 20 DADEVTFVNRFTVHGA--PAEFESVFARTAAFFARQPGFVRHTLLRERDK-----DNSYVNIAVWTDHDAFRRALAQPGF 92 (128)
T ss_dssp -CCCEEEEEEEEECSC--HHHHHHHHHHHHHHHHTSTTEEEEEEEECTTC-----SSEEEEEEEESSHHHHHHHHHCGGG
T ss_pred CCCcEEEEEEEEeCCC--HHHHHHHHHHHHHHHhcCCCccEEEEEEcCCC-----CCEEEEEEEECCHHHHHHHHcCHHH
Confidence 3689999999999998 67777766666666667999999999998742 2357999999999999999999999
Q ss_pred HHHHHHHhhhhc
Q 033887 84 VEYANLFLANLE 95 (109)
Q Consensus 84 ~~~~~~~~p~~~ 95 (109)
++..+.+.+++.
T Consensus 93 ~a~~~~l~~~~~ 104 (128)
T 3kg0_A 93 LPHATALRALST 104 (128)
T ss_dssp HHHHHHHHHHEE
T ss_pred HHHHHhhhhhcc
Confidence 999998888754
No 13
>3kkf_A Putative antibiotic biosynthesis monooxygenase; structural genomics, joint center for structural genomics, JCSG; HET: MSE P6G; 1.30A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=4.8e-07 Score=55.73 Aligned_cols=96 Identities=10% Similarity=0.069 Sum_probs=74.8
Q ss_pred CCCCeEEEEEEEEeCCCCCHHHHHHHHHHH-HhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcCh
Q 033887 3 EAKGVVKHVLLAKFKEGTAQDQIDQLIKDY-ANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHP 81 (109)
Q Consensus 3 ~~~~mi~HiVlf~~k~~~~~~~~~~~~~~l-~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp 81 (109)
+++.||.-++.++.||+..+ +..+.+..+ ......-||-+++.+.++.. .+-.+.++-.|+|.+++++...+|
T Consensus 1 ~~~~mi~via~~~vkpg~~~-~f~~~l~~~~~~s~r~EpGcl~y~~~~~~~-----~p~~~~~~E~w~d~~a~~~H~~s~ 74 (105)
T 3kkf_A 1 GAENNMVRLSRIIIDPERLE-EYNAYLKEEIEVSMRLEPGVLVLYAVAEKE-----RPNHVTILEIYADEAAYKSHIATP 74 (105)
T ss_dssp CGGGCEEEEEEEEECGGGHH-HHHHHHHHHHHHHHHHCTTEEEEEEEECSS-----CTTEEEEEEEESSHHHHHHHHTSH
T ss_pred CCCCCEEEEEEEEECcCcHH-HHHHHHHHHHHHHHhCCCCcEEEEEEEeCC-----CCCEEEEEEEECCHHHHHHHhcCH
Confidence 46789999999999988543 344444333 33213479999999998863 234689999999999999999999
Q ss_pred hHHHHHHHHhhhhcceEEEEeec
Q 033887 82 AHVEYANLFLANLEKVLVIDYKP 104 (109)
Q Consensus 82 ~H~~~~~~~~p~~~~~~~~D~~~ 104 (109)
..+++.+.+.++++...+.....
T Consensus 75 ~~~~~~~~~~~~l~~~~~~~l~p 97 (105)
T 3kkf_A 75 HFKKYKEGTLDMVQMLELIDATP 97 (105)
T ss_dssp HHHHHHHHHGGGEEEEEEEEECC
T ss_pred HHHHHHHHHHHHhhCcceEEEee
Confidence 99999999999998877666544
No 14
>1q8b_A Protein YJCS; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG, unknown function; 1.90A {Bacillus subtilis} SCOP: d.58.4.6
Probab=98.74 E-value=3.3e-07 Score=56.50 Aligned_cols=92 Identities=12% Similarity=0.011 Sum_probs=72.5
Q ss_pred CCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhH
Q 033887 4 AKGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAH 83 (109)
Q Consensus 4 ~~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H 83 (109)
+++||.-++.++.||+.+.++..+++..+......-||-+++.+.++... +-.+.++-.|+|.++++++..+|..
T Consensus 10 ~~~mi~vi~~~~vkpg~d~~~f~~~l~~~~~~~r~epGcl~~~~~~~~~~-----p~~~~~~E~w~d~~a~~~H~~s~~~ 84 (105)
T 1q8b_A 10 GISMHYITACLKIISDKDLNEIMKEFKKLEEETNKEEGCITFHAYPLEPS-----ERKIMLWEIWENEEAVKIHFTKKHT 84 (105)
T ss_dssp --CEEEEEEEEEECCCSCHHHHHHHHHHHHHHHTTSTTEEEEEEEECCGG-----GCEEEEEEEESSHHHHHHHTTSHHH
T ss_pred CceEEEEEEEEEECCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCC-----CCEEEEEEEECCHHHHHHHhcCHHH
Confidence 46789999999999997566666666555444456899999999998642 2368999999999999999999999
Q ss_pred HHHHHHHhhhhcceEEE
Q 033887 84 VEYANLFLANLEKVLVI 100 (109)
Q Consensus 84 ~~~~~~~~p~~~~~~~~ 100 (109)
+++.+.+.++++..-..
T Consensus 85 ~~~~~~~~~~l~~~e~~ 101 (105)
T 1q8b_A 85 IDVQKQELTEVEWLMKS 101 (105)
T ss_dssp HHHHTTTCEEEEEEEEE
T ss_pred HHHHHHHHHHhhChhhh
Confidence 99999888887654443
No 15
>2jdj_A HAPK, REDY-like protein; prodigiosin, biosynthesis, biosynthetic protein; 2.00A {Hahella chejuensis}
Probab=98.73 E-value=4.4e-07 Score=56.37 Aligned_cols=84 Identities=5% Similarity=0.016 Sum_probs=73.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHH-HhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHHHHHH
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDY-ANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYAN 88 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l-~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~~~~~ 88 (109)
=|++|+||++++++..+.+.+.. ..++.++|+|+++.+-+..+. ...+|.++-++.|+|.+++..=..+|.-+++.+
T Consensus 4 iv~~i~L~~g~d~~aFe~w~~evD~P~~~~LpsVrsF~V~R~~~~--g~~py~yiEvi~v~s~eaf~~~m~S~~~~~~~~ 81 (105)
T 2jdj_A 4 IIHKIRLFDVAQADAFEFWVQNVDYATCPDLPSVVRFDVHRASLQ--ANAPYHYVEVIKITDRAAFDADMETSTFAGLVQ 81 (105)
T ss_dssp EEEEEEESCGGGHHHHHHHHHHTHHHHGGGCTTEEEEEEEECCCC--TTCSCSEEEEEEESCHHHHHHHHTSHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHhchhhhccCCCcceeEEEEecccC--CCCCeeEEEEEecCCHHHHHHHhcCHHHHHHHH
Confidence 47899999999999988887544 677888999999999999865 356899999999999999999999999999999
Q ss_pred HHhhhhc
Q 033887 89 LFLANLE 95 (109)
Q Consensus 89 ~~~p~~~ 95 (109)
.+..+.+
T Consensus 82 dF~~fAd 88 (105)
T 2jdj_A 82 AFSRMAE 88 (105)
T ss_dssp HHHHHEE
T ss_pred HHHHHHH
Confidence 8877765
No 16
>2fb0_A Conserved hypothetical protein; SAD, bacteroides thetaiotaom structural genomics, PSI, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=2.1e-06 Score=51.39 Aligned_cols=88 Identities=10% Similarity=0.098 Sum_probs=69.4
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHH
Q 033887 5 KGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHV 84 (109)
Q Consensus 5 ~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~ 84 (109)
++||.-++.++.||+. .++..+++..+......-||-+++.+.++... +-.+.++-.|+|.++++++..+|..+
T Consensus 2 ~~mi~v~~~~~vkpg~-~~~~~~~~~~~~~~~~~epG~l~~~~~~~~~~-----p~~~~~~e~w~~~~a~~~h~~s~~~~ 75 (94)
T 2fb0_A 2 NSMIRLNVFVRVNETN-REKAIEAAKELTACSLKEEGCIAYDTFESSTR-----RDVFMICETWQNAEVLAAHEKTAHFA 75 (94)
T ss_dssp CCCEEEEEEEECCTTT-HHHHHHHHHHHHHHHTTSTTEEEEEEEECSSC-----TTEEEEEEEESSHHHHHHHTTSHHHH
T ss_pred CcEEEEEEEEEECccc-HHHHHHHHHHHHHHHhcCCCceEEEEEEcCCC-----CCEEEEEEEECCHHHHHHHhCCHHHH
Confidence 4689999999999985 44454544444333356899999999998642 23689999999999999999999999
Q ss_pred HHHHHHhhhhcceE
Q 033887 85 EYANLFLANLEKVL 98 (109)
Q Consensus 85 ~~~~~~~p~~~~~~ 98 (109)
++.+.+.++++..-
T Consensus 76 ~~~~~~~~~l~~~p 89 (94)
T 2fb0_A 76 QYVGIIQELAEMKL 89 (94)
T ss_dssp HHHHHHHHHSEEEE
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999876543
No 17
>1x7v_A PA3566 protein, APC5058; structural genomics, protein structure initiative, midwest center for structural genomics, alpha-beta plait, PSI; 1.78A {Pseudomonas aeruginosa} SCOP: d.58.4.11
Probab=98.63 E-value=2.1e-06 Score=51.81 Aligned_cols=88 Identities=6% Similarity=0.048 Sum_probs=68.4
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHHH
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVE 85 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~~ 85 (109)
+||.-++.++.||+.. ++..+++..+......-||-+++.+.++... +-.+.++-.|+|.++++++..+|..++
T Consensus 5 ~mi~v~~~~~vkpg~~-~~~~~~~~~~~~~~~~epG~l~~~~~~~~~~-----p~~~~~~e~w~~~~a~~~h~~s~~~~~ 78 (99)
T 1x7v_A 5 TPLTLIATITAAPGHA-EALERELRALVAPSRAEAGCLQYDLHQDRHD-----SHLFYMIEQWRDDAALERHQNTEHFLR 78 (99)
T ss_dssp SCEEEEEEEEECTTCH-HHHHHHHHHHHHHHHHSTTEEEEEEEECSSC-----TTEEEEEEEESSHHHHHHHHTSHHHHH
T ss_pred CcEEEEEEEEECCCCH-HHHHHHHHHHHHHHhCCCCceEEEEEecCCC-----CCEEEEEEEECCHHHHHHHhcCHHHHH
Confidence 4899999999999864 4454444444333356899999999998642 236899999999999999999999999
Q ss_pred HHHHHhhhhcceEE
Q 033887 86 YANLFLANLEKVLV 99 (109)
Q Consensus 86 ~~~~~~p~~~~~~~ 99 (109)
+.+.+.++.+...+
T Consensus 79 ~~~~~~~~~~~~~v 92 (99)
T 1x7v_A 79 FSRGNEALLQNVKI 92 (99)
T ss_dssp HHTTCGGGEEEEEE
T ss_pred HHHHHHHhcCCceE
Confidence 99988888544433
No 18
>2bbe_A Hypothetical protein SO0527; MCSG, structural genomics, PSI, protein structure in midwest center for structural genomics; 1.97A {Shewanella oneidensis}
Probab=98.58 E-value=2.5e-06 Score=52.59 Aligned_cols=88 Identities=11% Similarity=0.040 Sum_probs=69.2
Q ss_pred CCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhH
Q 033887 4 AKGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAH 83 (109)
Q Consensus 4 ~~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H 83 (109)
.++||.-++.++.||+.. ++..+.+..+......-||-+++.+.++... +-.+.++-.|+|.++++++..+|..
T Consensus 10 ~M~mi~v~~~~~vkpg~~-~~f~~~~~~~~~~~~~epGcl~~~~~~~~~~-----p~~~~~~E~w~~~~a~~~H~~s~~~ 83 (108)
T 2bbe_A 10 NQQQIVCVASFLSKEGKT-EALIAALASLIPDTRREAGCIRYELNVSRDE-----PRRVTFVEKFVDIAAFDEHCAKDAI 83 (108)
T ss_dssp CSSSEEEEEEEEECTTCH-HHHHHHHHTTHHHHHTSTTEEEEEEEECSSS-----TTEEEEEEEESSHHHHHHHHTSHHH
T ss_pred cCcEEEEEEEEEECCCcH-HHHHHHHHHHHHHHhcCCCcEEEEEEecCCC-----CCEEEEEEEECCHHHHHHHhcChHH
Confidence 367899999999999864 4444444333333345799999999988642 2368899999999999999999999
Q ss_pred HH-HHHHHhhhhcce
Q 033887 84 VE-YANLFLANLEKV 97 (109)
Q Consensus 84 ~~-~~~~~~p~~~~~ 97 (109)
++ +.+.+.+++++.
T Consensus 84 ~~~~~~~~~~~l~~~ 98 (108)
T 2bbe_A 84 QHYFHQVMPELVESF 98 (108)
T ss_dssp HHHHHHTHHHHEEEE
T ss_pred HHHHHHHHHHhcccc
Confidence 99 999999988773
No 19
>3bm7_A Protein of unknown function with ferredoxin-like; ferredoxin-like fold, antibiotic biosynthesis monooxygenase, structural genomics; HET: MSE; 1.35A {Caulobacter crescentus}
Probab=98.57 E-value=2.8e-06 Score=53.20 Aligned_cols=91 Identities=11% Similarity=0.052 Sum_probs=71.0
Q ss_pred CCCeEEEEEEEEeCCCCCHHHHHHHHHHHH-hhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChh
Q 033887 4 AKGVVKHVLLAKFKEGTAQDQIDQLIKDYA-NLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPA 82 (109)
Q Consensus 4 ~~~mi~HiVlf~~k~~~~~~~~~~~~~~l~-~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~ 82 (109)
+++||.-++.++.||+.. ++..+++..+. .....-||-+++.+.++... +-.+.++-.|+|.+++++...+|.
T Consensus 17 ~~~~i~vi~~~~vkpg~~-~~f~~~l~~~~~~~~r~EpGcl~y~l~~~~~~-----p~~f~~~E~W~d~ea~~aH~~s~~ 90 (115)
T 3bm7_A 17 FQGMIGVVATLKVQPAKA-AEFEKVFLDLAAKVKANEPGCLVYQLTRSKTE-----EGVYKVLELYASMDALKHHGGTDY 90 (115)
T ss_dssp CSSCEEEEEEEEECGGGH-HHHHHHHHHHHHHHHHHCTTEEEEEEEECSSS-----TTEEEEEEEESSHHHHHHHHHCHH
T ss_pred cCccEEEEEEEEECCCCH-HHHHHHHHHHHHHHhcCCCCcEEEEEEEcCCC-----CCEEEEEEEECCHHHHHHHhCCHH
Confidence 468999999999998854 44444444443 43345799999999998642 237899999999999999999999
Q ss_pred HHHHHHHHhhhhcceEEE
Q 033887 83 HVEYANLFLANLEKVLVI 100 (109)
Q Consensus 83 H~~~~~~~~p~~~~~~~~ 100 (109)
.+++.+.+.+++++...+
T Consensus 91 ~~~~~~~~~~ll~~~~~i 108 (115)
T 3bm7_A 91 FKAAGAAMGPTMAGAPVI 108 (115)
T ss_dssp HHHHHHHHGGGEEEEEEE
T ss_pred HHHHHHHHHHHhcCCcEE
Confidence 999999999988764443
No 20
>2pd1_A Hypothetical protein; unknown function, NE2512 protein, structural genomics, APC72 2, protein structure initiative; 1.86A {Nitrosomonas europaea} SCOP: d.58.4.11
Probab=98.56 E-value=4.5e-06 Score=50.83 Aligned_cols=84 Identities=11% Similarity=-0.020 Sum_probs=67.6
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHH
Q 033887 5 KGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHV 84 (109)
Q Consensus 5 ~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~ 84 (109)
|+||.-++.++.||+.. ++..+++..+......-||-+++.+.++ .+ -.+.++-.|+|.++++++..+|..+
T Consensus 3 M~~i~v~~~~~vkpg~~-~~~~~~l~~~~~~~~~epG~l~~~~~~~-~p------~~~~~~E~w~~~~a~~~H~~s~~~~ 74 (104)
T 2pd1_A 3 MTKLALFVRLEAKPGQE-AALADFLASALPLANAESGTTAWFALKF-GP------STFGVFDAFADEAGRQAHLNGQIAA 74 (104)
T ss_dssp TCCEEEEEEEEBCTTCH-HHHHHHHHHTHHHHHTCTTEEEEEEEEC-SS------SEEEEEEEESSHHHHHHHHTSHHHH
T ss_pred ceEEEEEEEEEeCCCCH-HHHHHHHHHHHHHHhCCCCcEEEEEEec-CC------CEEEEEEEECCHHHHHHHhCCHHHH
Confidence 57899999999999864 4454444444333346899999999888 43 2689999999999999999999999
Q ss_pred HHHHHHhhhhcc
Q 033887 85 EYANLFLANLEK 96 (109)
Q Consensus 85 ~~~~~~~p~~~~ 96 (109)
++.+.+.++++.
T Consensus 75 ~~~~~~~~ll~~ 86 (104)
T 2pd1_A 75 ALMANAATLLSS 86 (104)
T ss_dssp HHHHHHHHHBSS
T ss_pred HHHHHHHHHhcC
Confidence 999999998775
No 21
>2gff_A LSRG protein; dimeric alpha+beta barrel ferredoxin fold, sugar binding protein; 1.75A {Yersinia pestis} PDB: 3qmq_A
Probab=98.55 E-value=3.2e-06 Score=51.84 Aligned_cols=84 Identities=11% Similarity=0.023 Sum_probs=66.6
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHHHH
Q 033887 7 VVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEY 86 (109)
Q Consensus 7 mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~~~ 86 (109)
||.-++.++.||+. .++..+++..+......-||-+++.+.++... +-.+.++-.|+|.++++++..+|..+++
T Consensus 1 Mi~vi~~~~vkpg~-~~~~~~~~~~~~~~~r~epG~l~~~~~~~~~~-----p~~~~~~E~w~d~~a~~~h~~s~~~~~~ 74 (106)
T 2gff_A 1 MHVTLVEINVKEDK-VDQFIEVFRANHLGSIREAGNLRFDVLRDEHI-----PTRFYIYEAYTDEAAVAIHKTTPHYLQC 74 (106)
T ss_dssp CEEEEEEEEBCGGG-HHHHHHHHHHHHHHHHTSTTEEEEEEEEESSC-----TTEEEEEEEESSHHHHHHHTTSHHHHHH
T ss_pred CEEEEEEEEECcCC-HHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCC-----CCEEEEEEEECCHHHHHHHhcCHHHHHH
Confidence 78889999999885 34444444444333356899999999998642 2378999999999999999999999999
Q ss_pred HHHHhhhhcc
Q 033887 87 ANLFLANLEK 96 (109)
Q Consensus 87 ~~~~~p~~~~ 96 (109)
.+.+.++++.
T Consensus 75 ~~~~~~~l~~ 84 (106)
T 2gff_A 75 VEQLAPLMTG 84 (106)
T ss_dssp HHHHGGGBSS
T ss_pred HHHHHHHhcC
Confidence 9999998764
No 22
>3gz7_A Putative antibiotic biosynthesis monooxygenase; NP_888398.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 2.15A {Bordetella bronchiseptica}
Probab=98.55 E-value=2.9e-06 Score=53.45 Aligned_cols=91 Identities=8% Similarity=0.124 Sum_probs=70.9
Q ss_pred CCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHH-HhhcChh
Q 033887 4 AKGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVA-EYVAHPA 82 (109)
Q Consensus 4 ~~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~-~Y~~hp~ 82 (109)
..+||.=++.+++||+..++ ..+.++.+......-||-+++.+.++... +-.+.++..|+|.++++ .|..+|.
T Consensus 17 ~~~~i~via~~~vkpg~~~~-f~~~~~~~~~~~r~epGcl~y~l~r~~~~-----p~~f~~~E~W~s~eal~~hf~~S~h 90 (115)
T 3gz7_A 17 FQGMIQEIASILVQPGREAD-FEAGVAQARPLFMRARGCHGVALHRSIEA-----PQRYTLVVDWETVDNHMVDFRQSAD 90 (115)
T ss_dssp CCSCEEEEEEEEBCTTCHHH-HHHHHHHHHHHHHTSTTEEEEEEEEESSS-----TTEEEEEEEESSHHHHHTTTTTSHH
T ss_pred cceEEEEEEEEEECCCCHHH-HHHHHHHHHHHHhcCCCeEEEEEEecCCC-----CCEEEEEEEECCHHHHHHHHhcCHH
Confidence 36899999999999986544 44444334444456899999999998742 23689999999999999 5899999
Q ss_pred HHHHHHHHhhhhcceEEE
Q 033887 83 HVEYANLFLANLEKVLVI 100 (109)
Q Consensus 83 H~~~~~~~~p~~~~~~~~ 100 (109)
.+++.+.+.|+++.--.+
T Consensus 91 f~~~~~~~~~ll~~~p~i 108 (115)
T 3gz7_A 91 FQEWRKLVGECFAEPPQV 108 (115)
T ss_dssp HHHHHHHHGGGBSSCCEE
T ss_pred HHHHHHHHHHHhcCCCEE
Confidence 999999999998754333
No 23
>2omo_A DUF176; structural genomics, APC6266, PSI-2, protein structure initi midwest center for structural genomics, MCSG, oxidoreductas; HET: MSE; 1.83A {Nitrosomonas europaea} SCOP: d.58.4.11
Probab=98.52 E-value=4.9e-06 Score=52.83 Aligned_cols=87 Identities=5% Similarity=0.011 Sum_probs=69.4
Q ss_pred CCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhH
Q 033887 4 AKGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAH 83 (109)
Q Consensus 4 ~~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H 83 (109)
..+||.-++.|+.||+. .++..+++..+......-||-+++.+.++... +-.+.++-.|+|.++++++..+|..
T Consensus 20 ~~~mi~vi~~~~vkpg~-~~~f~~~l~~~~~~sr~EpGcl~y~l~~~~~d-----p~~f~~~E~W~d~eal~aH~~s~~~ 93 (124)
T 2omo_A 20 QGHMYVTIVYASVKTDK-TEAFKEATRMNHEQSIREPGNMRFDILQSADD-----PTRFVLYEAYKTRKDAAAHKETAHY 93 (124)
T ss_dssp CCSSEEEEEEEEBCGGG-HHHHHHHHHHHHHHHTTSTTEEEEEEEEESSC-----TTEEEEEEEESSHHHHHHHTTSHHH
T ss_pred CCceEEEEEEEEECcCc-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCC-----CCEEEEEEEECCHHHHHHHhCCHHH
Confidence 35789999999999885 44455554444444456899999999988642 2378999999999999999999999
Q ss_pred HHHHHHHhhhhcc
Q 033887 84 VEYANLFLANLEK 96 (109)
Q Consensus 84 ~~~~~~~~p~~~~ 96 (109)
+++.+.+.++++.
T Consensus 94 ~~~~~~~~~ll~~ 106 (124)
T 2omo_A 94 LTWRDTVADWMAE 106 (124)
T ss_dssp HHHHHHHGGGBSS
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998765
No 24
>4dpo_A Conserved protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.73A {Methanosarcina mazei}
Probab=98.51 E-value=2.8e-06 Score=53.66 Aligned_cols=86 Identities=10% Similarity=0.020 Sum_probs=68.8
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHH
Q 033887 5 KGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHV 84 (109)
Q Consensus 5 ~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~ 84 (109)
++||.-++.++.||+.- ++..+.++.+......-||-+++.+.++... +-.+.++-.|+|.++++++..+|..+
T Consensus 23 m~MI~via~~~vkpg~~-~~f~~~l~~~~~~~r~EpGcl~y~l~~~~~d-----p~~f~~~E~W~d~ea~~aH~~s~~f~ 96 (119)
T 4dpo_A 23 MLAIRVVAKNQVKPEKV-QEFMNLCKSLIEETLKEEGCIDYGVYQELEN-----PEILTMLEEWKDEGSLDQHIRSDHFK 96 (119)
T ss_dssp HHCEEEEEEEEBCTTTH-HHHHHHHHHHHHHHHTSTTEEEEEEEEETTE-----EEEEEEEEEESSHHHHHHHHTSHHHH
T ss_pred cceEEEEEEEEECCCcH-HHHHHHHHHHHHHHhcCCCcEEEEEEEcCCC-----CCEEEEEEEECCHHHHHHHHcCHHHH
Confidence 57999999999999854 4444444444333356899999999998642 23689999999999999999999999
Q ss_pred HHHHHHhhhhcc
Q 033887 85 EYANLFLANLEK 96 (109)
Q Consensus 85 ~~~~~~~p~~~~ 96 (109)
++.+.+.++++.
T Consensus 97 ~~~~~~~~ll~~ 108 (119)
T 4dpo_A 97 EIFPLLSECLDK 108 (119)
T ss_dssp HHHHHHHHTBSS
T ss_pred HHHHHHHHHhcC
Confidence 999999998874
No 25
>1tuv_A Protein YGIN; menadione oxidase, monooxygenase, CO-crystal with natural PR ferredoxin fold, unknown function; HET: VK3; 1.70A {Escherichia coli} SCOP: d.58.4.11 PDB: 1r6y_A
Probab=98.46 E-value=1e-05 Score=50.48 Aligned_cols=91 Identities=8% Similarity=0.050 Sum_probs=68.4
Q ss_pred eEEEEEEEEeCCCC-CHHHHHHHHHHHHhhhhcCCCeeEEEeeeccC---ccccCCCccEEEEEEECCHHhHHHhhcChh
Q 033887 7 VVKHVLLAKFKEGT-AQDQIDQLIKDYANLVNLIEPMKSFQWGKNVS---IENLHQGFTHIFESTFESTEGVAEYVAHPA 82 (109)
Q Consensus 7 mi~HiVlf~~k~~~-~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~---~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~ 82 (109)
||.-++.++.||+. ..++..+.+..+......-||-+++.+.++.. |...+++-.+.++-.|+|.++++++..+|.
T Consensus 1 Mi~via~~~vkpg~~~~~~f~~~l~~~~~~~r~EpGcl~y~~~~~~~~~~~~~~~~p~~~~~~E~W~d~~al~aH~~s~h 80 (114)
T 1tuv_A 1 MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMVDCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPH 80 (114)
T ss_dssp CEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSTTEEEEEEECCCCCCCTTCCCCTTEEEEEEEESCHHHHHHHHTSHH
T ss_pred CEEEEEEEEECCCcchHHHHHHHHHHHHHHHccCCCcEEEEEEecccccccccCCCCCEEEEEEEECCHHHHHHHhcCHH
Confidence 78889999999983 34445555444444445679999999998831 000123447899999999999999999999
Q ss_pred HHHHHHHHhhhhcce
Q 033887 83 HVEYANLFLANLEKV 97 (109)
Q Consensus 83 H~~~~~~~~p~~~~~ 97 (109)
.+++.+.+.+++++.
T Consensus 81 ~~~~~~~~~~l~~~~ 95 (114)
T 1tuv_A 81 MKAYSEAVKGDVLEM 95 (114)
T ss_dssp HHHHHHHHTTTEEEE
T ss_pred HHHHHHHHHHhccCC
Confidence 999999999987764
No 26
>3e8o_A Uncharacterized protein with erredoxin-like fold; putative antibiotic biosynthesis monooxygenase; HET: MSE; 1.40A {Deinococcus radiodurans}
Probab=98.45 E-value=1.2e-05 Score=50.58 Aligned_cols=85 Identities=9% Similarity=0.024 Sum_probs=68.0
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHH
Q 033887 5 KGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHV 84 (109)
Q Consensus 5 ~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~ 84 (109)
++||.=++.++.|++. .++..+++..+......-||-+++.+.++.. ++-.+.++-.|+|.++++++..+|..+
T Consensus 17 ~~mi~via~~~vkpg~-~~~~~~~l~~~~~~~r~EpGcl~y~l~~~~~-----dp~~f~~~E~W~d~ea~~aH~~s~~~~ 90 (119)
T 3e8o_A 17 TTMVISHGTLSASAEH-AAHLRQLLVHIAQATRQEDGCLLYLVSEDLS-----QPGHFLITEHWDNLGAMHTHLALPGVT 90 (119)
T ss_dssp -CCEEEEEEEECCTTT-HHHHHHHHHHHHHHHTTSTTEEEEEEEEETT-----STTEEEEEEEESSHHHHHHHHTCHHHH
T ss_pred CceEEEEEEEEECCCC-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCC-----CCCEEEEEEEECCHHHHHHHHcCHHHH
Confidence 5799999999999985 4445555544444445689999999999864 233789999999999999999999999
Q ss_pred HHHHHHhhhhc
Q 033887 85 EYANLFLANLE 95 (109)
Q Consensus 85 ~~~~~~~p~~~ 95 (109)
++.+.+.+++.
T Consensus 91 ~~~~~~~~ll~ 101 (119)
T 3e8o_A 91 QAIDALKHLNV 101 (119)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhc
Confidence 99999999854
No 27
>1iuj_A Hypothetical protein TT1380; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.60A {Thermus thermophilus} SCOP: d.58.4.5
Probab=98.44 E-value=2.5e-06 Score=51.98 Aligned_cols=83 Identities=13% Similarity=0.072 Sum_probs=65.6
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHHHH
Q 033887 7 VVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEY 86 (109)
Q Consensus 7 mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~~~ 86 (109)
||.-++.|++|++. .++..+..+.+.......||-+++.+.++... +-.+.++..|+|.++++++..+|.++++
T Consensus 1 Mi~vi~~~~v~~g~-~~~f~~~~~~~~~~~~~~pG~l~~~l~~~~~~-----~~~~~~~~~W~s~~a~~a~~~s~~~~~~ 74 (106)
T 1iuj_A 1 MFVTMNRIPVRPEY-AEQFEEAFRQRARLVDRMPGFIRNLVLRPKNP-----GDPYVVMTLWESEEAFRAWTESPAFKEG 74 (106)
T ss_dssp CEEEEEEECBCGGG-HHHHHHHHHHHGGGGTTSTTEEEEEEEEESST-----TSCEEEEEEESCHHHHHHHHTSHHHHHH
T ss_pred CEEEEEEEEeCcch-HHHHHHHHHHHHHHhccCCCceEEEEEecCCC-----CCeEEEEEEECCHHHHHHHhcCHHHHHH
Confidence 68888889998875 44555555555555567899999999998742 2268999999999999999999999999
Q ss_pred HHHHh----hhhc
Q 033887 87 ANLFL----ANLE 95 (109)
Q Consensus 87 ~~~~~----p~~~ 95 (109)
.+.+. +++.
T Consensus 75 ~~~~~~~~~~~~~ 87 (106)
T 1iuj_A 75 HARSGTLPKEAFL 87 (106)
T ss_dssp TTTTSSSSCSCBS
T ss_pred HhccccCCccccc
Confidence 99877 6554
No 28
>1y0h_A Hypothetical protein RV0793; ferredoxin-like fold, alpha+beta sandwich with antiparallel sheet, structural genomics, PSI; 1.60A {Mycobacterium tuberculosis} SCOP: d.58.4.11
Probab=98.44 E-value=3.4e-06 Score=51.12 Aligned_cols=85 Identities=11% Similarity=0.089 Sum_probs=66.9
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHH
Q 033887 5 KGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHV 84 (109)
Q Consensus 5 ~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~ 84 (109)
++||.-++.++.||+.- ++..+++..+......-||-+++.+.++ .. +-.+.++-.|+|.++++++..+|..+
T Consensus 3 ~~mi~v~~~~~vkpg~~-~~~~~~~~~~~~~~~~epG~l~~~~~~~-~~-----~~~~~~~e~w~~~~a~~~h~~s~~~~ 75 (102)
T 1y0h_A 3 TSPVAVIARFMPRPDAR-SALRALLDAMITPTRAEDGCRSYDLYES-AD-----GGELVLFERYRSRIALDEHRGSPHYL 75 (102)
T ss_dssp TSCEEEEEEECBCGGGH-HHHHHHHHHHHHHHHHSTTEEEEEEEEE-TT-----SSCEEEEEEESSHHHHHHHHTSHHHH
T ss_pred CceEEEEEEEEECCCcH-HHHHHHHHHHHHHHhcCCCcEEEEEEEe-CC-----CCEEEEEEEECCHHHHHHHhcChHHH
Confidence 35899999999998853 4444444444333356899999999998 53 12588999999999999999999999
Q ss_pred HHHHHHhhhhcc
Q 033887 85 EYANLFLANLEK 96 (109)
Q Consensus 85 ~~~~~~~p~~~~ 96 (109)
++.+.+.++++.
T Consensus 76 ~~~~~~~~~l~~ 87 (102)
T 1y0h_A 76 NYRAQVGELLTR 87 (102)
T ss_dssp HHHTTSGGGBSS
T ss_pred HHHHHHHHHhcC
Confidence 999999998765
No 29
>2zdo_A Heme-degrading monooxygenase ISDG; ruffling, protein-substrate complex, cytoplasm, iron, metal-binding, oxidoreductase; HET: HEM; 1.80A {Staphylococcus aureus} PDB: 1xbw_A
Probab=98.31 E-value=4.8e-06 Score=51.43 Aligned_cols=81 Identities=7% Similarity=0.016 Sum_probs=62.5
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHH
Q 033887 5 KGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHV 84 (109)
Q Consensus 5 ~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~ 84 (109)
++||.-+..|++|++..+ +..+....+ ......||-+++.+-++... +++-.+.++..|+|.++++++..+|.|+
T Consensus 2 ~mMi~vi~~~~v~pg~~~-~f~~~~~~~-~~~~~~pG~i~~~l~r~~~~---~~~~~~~~~~~W~s~ea~~a~~~s~~f~ 76 (109)
T 2zdo_A 2 TMKFMAEARLTLTKGTAK-DIIERFYTR-HGIETLEGFDGMFVTQTLEQ---EDFDEVKILTVWKSKQAFTDWLKSDVFK 76 (109)
T ss_dssp CCCEEEEEEEEEETTCHH-HHHHHTTSC-CSGGGCTTEEEEEEEEETTC---SSEEEEEEEEEESCHHHHHHHHTSHHHH
T ss_pred cEEEEEEEEEEeCCCCHH-HHHHHHhcc-cccccCCCeEEEEEEecCCC---CCceEEEEEEEECCHHHHHHHHcCHHHH
Confidence 468999999999998643 344443333 34446899999999999853 1223689999999999999999999999
Q ss_pred HHHHHH
Q 033887 85 EYANLF 90 (109)
Q Consensus 85 ~~~~~~ 90 (109)
++.+..
T Consensus 77 ~~~~~~ 82 (109)
T 2zdo_A 77 AAHKHV 82 (109)
T ss_dssp HHHTTC
T ss_pred HHHHhh
Confidence 988643
No 30
>3f44_A Putative monooxygenase; YP_193413.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.55A {Lactobacillus acidophilus ncfm}
Probab=98.28 E-value=1.5e-05 Score=55.37 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=77.2
Q ss_pred CCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhH
Q 033887 4 AKGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAH 83 (109)
Q Consensus 4 ~~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H 83 (109)
+..||..++.++.||+.-++-.+.+.+.+......=||-+++.+.++.. .+-.+.++-.|+|.+++++....|..
T Consensus 113 ~~~mI~~ia~~~vkpg~~~~f~~~l~~~~~~~~r~EpGcl~y~~~~d~~-----~p~~f~~~E~w~d~~Al~aH~~s~hf 187 (220)
T 3f44_A 113 ADNFVMRLIKVEVKDADAEKFSHAVKKEMTTSMASEPGMEIMMSGTNID-----NPNEWYFIEVYANDEAYDIHVKTPHY 187 (220)
T ss_dssp -CCCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCTTEEEEEEEEETT-----EEEEEEEEEEESSHHHHHHHTTSHHH
T ss_pred CCceEEEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEEcCC-----CCCEEEEEEEECCHHHHHHHhcCHHH
Confidence 4789999999999988543333333234433334579999999999864 23468999999999999999999999
Q ss_pred HHHHHHHhhhhcceEEEEeecCee
Q 033887 84 VEYANLFLANLEKVLVIDYKPTTV 107 (109)
Q Consensus 84 ~~~~~~~~p~~~~~~~~D~~~~~~ 107 (109)
+++.+.+.+++++..+..+....+
T Consensus 188 ~~~~~~~~~ll~~~~v~~l~p~~l 211 (220)
T 3f44_A 188 KEYIEETDGMVKSRDVKTLVRDTL 211 (220)
T ss_dssp HHHHHHTTTTEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCceEEeechhh
Confidence 999999999999888887776544
No 31
>4dn9_A Antibiotic biosynthesis monooxygenase; structural genomics,protein structure initiative, NEW YORK S genomix research consortium, nysgrc; 2.05A {Chloroflexus aurantiacus}
Probab=98.24 E-value=4.8e-05 Score=48.17 Aligned_cols=85 Identities=8% Similarity=-0.010 Sum_probs=66.6
Q ss_pred CCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhH
Q 033887 4 AKGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAH 83 (109)
Q Consensus 4 ~~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H 83 (109)
+.+||.=++.|+.||+..++-.+.+ ......-||-+++.+.++... +-.+.++-.|+|.++++++..+|..
T Consensus 20 ~~~Mi~via~~~vkpg~~~ef~~~l----~~~~r~EpGcl~y~l~~~~~d-----p~~f~~~E~W~d~ea~~aH~~s~~f 90 (122)
T 4dn9_A 20 FQSMYGLIGKMRATPGQRDALIAIL----VEGASSMPGCLSYVVAQDPKD-----PDAIWITEVWDSPESHKASLSLPSV 90 (122)
T ss_dssp --CCEEEEEEEEESTTCHHHHHHHH----HHHTTTCTTEEEEEEEEETTE-----EEEEEEEEEESCHHHHHHGGGSHHH
T ss_pred CCCcEEEEEEEEECCCCHHHHHHHH----HHHHhCCCCCEEEEEEecCCC-----CCEEEEEEEECCHHHHHHHHcCHHH
Confidence 3579999999999988654433333 233345799999999998642 2367899999999999999999999
Q ss_pred HHHHHHHhhhhcce
Q 033887 84 VEYANLFLANLEKV 97 (109)
Q Consensus 84 ~~~~~~~~p~~~~~ 97 (109)
+++.+.+.++++..
T Consensus 91 ~~~~~~~~~ll~~~ 104 (122)
T 4dn9_A 91 QDAIACGRPLIAAL 104 (122)
T ss_dssp HHHHHHHGGGEEEE
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999998754
No 32
>4hl9_A Antibiotic biosynthesis monooxygenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.93A {Rhodospirillum rubrum}
Probab=98.21 E-value=3.7e-05 Score=48.55 Aligned_cols=92 Identities=9% Similarity=0.009 Sum_probs=69.6
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHH
Q 033887 5 KGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHV 84 (109)
Q Consensus 5 ~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~ 84 (109)
++||.=|.-++.||+.- ++..++++.+......=||-+++.+-++... .-.+.++-.|+|.++++++...|..+
T Consensus 21 ~sMi~viA~~~vkP~~~-d~~~~~~~~l~~~tr~EpGcl~y~l~~d~~d-----p~~f~~~E~w~d~~al~~H~~s~h~~ 94 (118)
T 4hl9_A 21 QSMLKVIAQDFIKPEAI-DIVLPLYRELVEKTRQEPLCLAYDLFVDQKD-----PGHFVFIEEWPDRAALDIHCATEHFT 94 (118)
T ss_dssp --CEEEEEEEEECGGGH-HHHHHHHHHHHHHHHTSTTCCEEEEEEETTE-----EEEEEEEEEESSHHHHHHHHHSHHHH
T ss_pred heeeEEEEEEEECchhH-HHHHHHHHHHHHHHhcCCCcEEEEEEEcCCC-----CCEEEEEEEeCCHHHHHHHHCCHHHH
Confidence 57999999999998853 3344444444333345799999999998642 23689999999999999999999999
Q ss_pred HHHHHHhhhhcceEEEEe
Q 033887 85 EYANLFLANLEKVLVIDY 102 (109)
Q Consensus 85 ~~~~~~~p~~~~~~~~D~ 102 (109)
++.+.+.++++.-..+.+
T Consensus 95 ~~~~~l~~~l~~~~~i~~ 112 (118)
T 4hl9_A 95 RLVPLINAHQRQDGTVVL 112 (118)
T ss_dssp HHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEE
Confidence 999999998875544443
No 33
>2ril_A Antibiotic biosynthesis monooxygenase; YP_001095275.1, putative monooxygenase, antibiotic biosynthe monooxygenase, structural genomics; HET: MSE; 1.26A {Shewanella loihica}
Probab=98.13 E-value=3.1e-05 Score=46.89 Aligned_cols=73 Identities=8% Similarity=0.001 Sum_probs=55.3
Q ss_pred CCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcC
Q 033887 4 AKGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAH 80 (109)
Q Consensus 4 ~~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~h 80 (109)
+.+||.-|..|+.||+.. ++..+....+......-||-+++.+.++... +..|.++++..|+|.+++++...|
T Consensus 2 ~~~mi~~i~~~~v~pg~~-~~f~~~~~~~~~~~~~~pG~i~~~l~~~~~~---~~~~~~~~~~~W~s~ea~~a~~~~ 74 (99)
T 2ril_A 2 MSAPVTLINPFKVPADKL-EAAIEYWEAHRDFMAQQPGYLSTQLHQSIDE---GATYQLINVAIWQSEADFYQAAQK 74 (99)
T ss_dssp CCCCEEEEEEEBCCTTCH-HHHHHHHHHHHHHHTTSTTEEEEEEEECSST---TSSCSEEEEEEESCHHHHHHHHHH
T ss_pred CCceEEEEEEEEECCccH-HHHHHHHHHHHHHHhcCCCeeeEEEeecCCC---CCeEEEEEEEEECCHHHHHHHHHh
Confidence 467999999999999864 4444444444444456899999999998753 345678999999999999995555
No 34
>1sqe_A Hypothetical protein PG130; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.50A {Staphylococcus aureus} SCOP: d.58.4.5 PDB: 2zdp_A* 3lgm_A* 3lgn_A* 3qgp_A*
Probab=98.04 E-value=1.9e-05 Score=48.65 Aligned_cols=80 Identities=10% Similarity=0.085 Sum_probs=59.1
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHHH
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVE 85 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~~ 85 (109)
.||.-+..|++|++.. ++..+....+ ......||-+++.+-++... ++.-.+.++..|+|.++++++..+|.|++
T Consensus 1 ~Mi~vi~~~~v~pg~~-~~f~~~~~~~-~~~~~~pG~l~~~l~r~~~~---~~~~~~~~~~~W~s~ea~~a~~~s~~f~~ 75 (109)
T 1sqe_A 1 HMFMAENRLQLQKGSA-EETIERFYNR-QGIETIEGFQQMFVTKTLNT---EDTDEVKILTIWESEDSFNNWLNSDVFKE 75 (109)
T ss_dssp CCEEEEEEEEECTTCH-HHHGGGGGCC-TTGGGSTTEEEEEEEEETTC---SSSEEEEEEEEESCHHHHHHHHTSHHHHH
T ss_pred CEEEEEEEEEECCCcH-HHHHHHHhcc-cccccCCCeEEEEEEEcCCC---CCCcEEEEEEEECCHHHHHHHHcCHHHHH
Confidence 3788999999999854 3344433333 34456899999999999753 11246899999999999999999999998
Q ss_pred HHHHH
Q 033887 86 YANLF 90 (109)
Q Consensus 86 ~~~~~ 90 (109)
+.+..
T Consensus 76 ~~~~~ 80 (109)
T 1sqe_A 76 AHKNV 80 (109)
T ss_dssp CC---
T ss_pred HHhcc
Confidence 77655
No 35
>3bf4_A Ethyl TERT-butyl ether degradation ETHD protein; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 2.10A {Ralstonia eutropha JMP134}
Probab=98.02 E-value=1.5e-05 Score=51.20 Aligned_cols=90 Identities=12% Similarity=0.123 Sum_probs=65.6
Q ss_pred CCCeEEEEEEEEeCCCCCHHHHH--HHHHHHHhhhhcC--CCeeEEEeeeccC--ccccCCCccEEEEEEECCHHhHHHh
Q 033887 4 AKGVVKHVLLAKFKEGTAQDQID--QLIKDYANLVNLI--EPMKSFQWGKNVS--IENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 4 ~~~mi~HiVlf~~k~~~~~~~~~--~~~~~l~~L~~~i--p~i~~~~~G~~~~--~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
.++|++-+|+++-+++ ++.+ =..+.-..|..++ |+++++.+.+.+. +.+.+.+|+.+..+.|+|.+++++.
T Consensus 17 ~~~MiKl~VlY~r~~d---~~Fd~dYY~~~H~PLv~~l~gp~Lr~y~v~~~~~~~~~g~~~~yd~iael~FdS~eal~aA 93 (127)
T 3bf4_A 17 FQGMIKVNVMYPYTEG---ARFDHAYYCDRHMPMVKARLGSACAYYTVEKGLAGSASGAPPAFVAMCAFICDSAENFYAA 93 (127)
T ss_dssp CCSCEEEEEEEECCTT---CCBCHHHHHHTHHHHHHHHHGGGCSEEEEEEEEECSSTTCCCSEEEEEEEEESCHHHHHHH
T ss_pred cCccEEEEEEEcCCCC---cchhHHHHHhhHHHHHHHhccccceEEEEEccccCCCCCCCCCEEEEEEEEECCHHHHHHH
Confidence 3689999999998877 3333 3334344555566 8899998877552 2344678999999999999999998
Q ss_pred hcChhHHHHHHHHhhhhcce
Q 033887 78 VAHPAHVEYANLFLANLEKV 97 (109)
Q Consensus 78 ~~hp~H~~~~~~~~p~~~~~ 97 (109)
. .|.-+++.+.+..+.+..
T Consensus 94 ~-~~~~~~v~aDv~nFtd~~ 112 (127)
T 3bf4_A 94 M-YYHGAEILGDIANYTDIA 112 (127)
T ss_dssp H-HHHHHHHHHTGGGTBCCC
T ss_pred h-CccHHHHHhhHHHhCCCC
Confidence 8 565666777777776643
No 36
>3hx9_A Protein RV3592; DI-heme, beta barrel, dimer, oxidoreductase; HET: HEM; 1.75A {Mycobacterium tuberculosis}
Probab=97.95 E-value=4.4e-05 Score=48.63 Aligned_cols=93 Identities=14% Similarity=0.107 Sum_probs=63.7
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHHH
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVE 85 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~~ 85 (109)
+||.=|..|+++++.. ++..+....+.......||-+++.+-++... +=.+.++..|+|.++++++..+|...+
T Consensus 1 Mmivvi~~~~V~pg~~-~efe~~~~~~~~~~~~~pGfl~~~L~r~~~~-----p~~yv~~~~WeS~ea~~aw~~S~fr~a 74 (124)
T 3hx9_A 1 MPVVKINAIEVPAGAG-PELEKRFAHRAHAVENSPGFLGFQLLRPVKG-----EERYFVVTHWESDEAFQAWANGPAIAA 74 (124)
T ss_dssp -CEEEEEEECCCTTCH-HHHHHHHHHTTTTTTTCTTEEEEEEEEEEES-----CCSEEEEEEESCHHHHHHHHHTHHHHT
T ss_pred CEEEEEEEEEECCCCH-HHHHHHHHHHHHHHhcCCCceEEEEEeCCCC-----CCEEEEEEEECCHHHHHHHHhChHHHH
Confidence 4788889999998854 4454444444444456899999999988742 124789999999999999999995333
Q ss_pred HHH-HHhhhhcceEEEEeec
Q 033887 86 YAN-LFLANLEKVLVIDYKP 104 (109)
Q Consensus 86 ~~~-~~~p~~~~~~~~D~~~ 104 (109)
-.. ..+|+....-.+-|++
T Consensus 75 h~~~~~~~~~~g~p~~efev 94 (124)
T 3hx9_A 75 HAGHRANPVATGASLLEFEV 94 (124)
T ss_dssp TTTCCCCCCCCCEEEEEEEE
T ss_pred hhcccCCCcccCCCceeEEE
Confidence 332 3567655444444544
No 37
>2go8_A Hypothetical protein YQJZ; SR435, protein structure, structural genomics, PSI, protein initiative, northeast structural genomics consortium; 2.30A {Bacillus subtilis} SCOP: d.58.4.5
Probab=97.87 E-value=5.1e-05 Score=48.38 Aligned_cols=76 Identities=9% Similarity=0.083 Sum_probs=49.8
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHH
Q 033887 5 KGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHV 84 (109)
Q Consensus 5 ~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~ 84 (109)
++|+ .|+|...+....+...++.+.+..+...+||-++++.-++. .| -...++.|+|+++++++..+|+|+
T Consensus 11 ~pm~--aViFe~~~~~~~~~Y~~la~~~~~la~~qpGFI~~Es~~~~------dg-~~is~SyW~deeai~aW~~~~eHr 81 (122)
T 2go8_A 11 PPYY--AVIFSSVKSENDTGYGETAERMVSLAADQPGFLGVESVREA------DG-RGITVSYWDSMDAINHWRHHTEHQ 81 (122)
T ss_dssp SCEE--EEEEEEECC------CHHHHHHHHHHHHSTTEEEEEEEECT------TS-EEEEEEEESCHHHHHHHHHHC---
T ss_pred CCEE--EEEEEEEeCCchhHHHHHHHHHHHHHhhCCCceEEEEEEcC------CC-CEEEEEEeCCHHHHHHHHhCHHHH
Confidence 4454 46888888766667788888999999999999998843332 13 577899999999999999999999
Q ss_pred HHHHH
Q 033887 85 EYANL 89 (109)
Q Consensus 85 ~~~~~ 89 (109)
+..+.
T Consensus 82 ~Aq~~ 86 (122)
T 2go8_A 82 AAKEK 86 (122)
T ss_dssp -----
T ss_pred HHHHh
Confidence 98765
No 38
>1tz0_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, HYP protein, PSI; 1.84A {Bacillus cereus atcc 14579} SCOP: d.58.4.5
Probab=97.84 E-value=3.4e-05 Score=48.25 Aligned_cols=81 Identities=14% Similarity=0.098 Sum_probs=61.5
Q ss_pred CCC-eEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChh
Q 033887 4 AKG-VVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPA 82 (109)
Q Consensus 4 ~~~-mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~ 82 (109)
.++ ||.=+..|+++++.. ++.++..... .+....||-+++.+-++... ...=.+.+++.|+|.++++++..+|+
T Consensus 3 ~~~~Mi~vi~~~~V~~g~~-~~fe~~~~~~-~~l~~~pGFi~~~llr~~~~---~~~~~y~~~~~W~s~eaf~aw~~S~~ 77 (114)
T 1tz0_A 3 AMGYMFIETKTFTVKEGTS-NIVVERFTGE-GIIEKFEGFIDLSVLVKKVR---RGDEEVVVMIRWESEEAWKNWETSEE 77 (114)
T ss_dssp --CCCEEEEEEEEECTTCH-HHHHHHTCSC-CSGGGBTTEEEEEEEECCCS---SSSEEEEEEEEESCHHHHHHHHTCSC
T ss_pred CccceEEEEEEEEECCCcH-HHHHHHHhcc-chhhcCCCeeEEEEEEcCCC---CCCcEEEEEEEECCHHHHHHHHcCHH
Confidence 455 999999999999864 4444444334 44567999999999998752 12236899999999999999999999
Q ss_pred HHHHHHH
Q 033887 83 HVEYANL 89 (109)
Q Consensus 83 H~~~~~~ 89 (109)
|++..+.
T Consensus 78 f~~~~~~ 84 (114)
T 1tz0_A 78 HLAGHRA 84 (114)
T ss_dssp CCGGGSS
T ss_pred HHHHHHh
Confidence 9987764
No 39
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=97.73 E-value=0.0013 Score=42.80 Aligned_cols=91 Identities=14% Similarity=0.200 Sum_probs=64.4
Q ss_pred CCeEEEEEEEEeCCC---------CCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccC-CCccEEEEEEECCHHhH
Q 033887 5 KGVVKHVLLAKFKEG---------TAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLH-QGFTHIFESTFESTEGV 74 (109)
Q Consensus 5 ~~mi~HiVlf~~k~~---------~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~-~~~~~~~~~~F~s~e~l 74 (109)
.+.|.=+=|++||+. .+++..++..+.....-.+..|=.-+..|.....++.. ..|+.+++++|+|.++.
T Consensus 22 ~~pv~MlNLlrf~~~a~y~dg~~vtd~e~y~~Y~~~~~~~l~~~GG~~l~rG~~~~~lEG~~~e~~~~~viieFPS~~aa 101 (143)
T 3hhl_A 22 EGPIHMLNLVRLRPRAAYPDGRETTGAEAYAAYGRDSGPVSERLGGXVVWQGQFELMLIGPQDEHWDHVFIAEYPSVAAF 101 (143)
T ss_dssp SSCEEEEEEEEECSBCCCTTCCCCBHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEESCTTCCCSEEEEEEESCHHHH
T ss_pred CCCEEEEehhcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEeecCCceeEECCCCCCCCeEEEEECCCHHHH
Confidence 456666778899862 35566677766666555567775455555555444432 24999999999999999
Q ss_pred HHhhcChhHHHHHHHHhhhhc
Q 033887 75 AEYVAHPAHVEYANLFLANLE 95 (109)
Q Consensus 75 ~~Y~~hp~H~~~~~~~~p~~~ 95 (109)
.++.++|++|++.+.-...++
T Consensus 102 ~a~y~SpeYq~a~~~R~~a~~ 122 (143)
T 3hhl_A 102 VEMIRDPVYREAVKHRQAAVE 122 (143)
T ss_dssp HHHHHCHHHHHHHHHHHHHEE
T ss_pred HHHHcCHHHHHHHHHHHHhhc
Confidence 999999999999885444444
No 40
>3fgv_A Uncharacterized protein with ferredoxin-like fold; phosphoserine aminotransferase SERC, structural genomics; HET: MSE; 1.30A {Silicibacter pomeroyi dss-3}
Probab=97.67 E-value=0.00036 Score=43.20 Aligned_cols=88 Identities=8% Similarity=-0.000 Sum_probs=60.0
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeE--EEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChh
Q 033887 5 KGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKS--FQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPA 82 (109)
Q Consensus 5 ~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~--~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~ 82 (109)
++|+.=|+-++.||+.-+ +..+++..+......-||=++ +..-++... ..-| -.|+|.+++++|...|.
T Consensus 12 ~m~~~Via~l~~kp~~~~-~~~~~~~~lv~~tr~e~Gci~~~y~L~qd~~~---p~~f-----E~W~s~eal~~h~~~~~ 82 (106)
T 3fgv_A 12 SMREVVIVKSTPQRGKFN-AFAELVGKLVSETRDFPGCLGAYLMLAPERNE---QVVM-----HIWETPDALEAYLTWRA 82 (106)
T ss_dssp -CCEEEEEEECBCTTCHH-HHHHHHHHHHHHHHTSTTEEEEEEEEEGGGTE---EEEE-----EEESSHHHHHHHHHHHT
T ss_pred cceEEEEEEEEECCCCHH-HHHHHHHHHHHHHhCCCCCCcceEEEecCCCC---CCEE-----EEECCHHHHHHHHcCHH
Confidence 345555556667776543 344444444444456899888 777666532 1212 99999999999999999
Q ss_pred HHHHHHHHhhhhcceEEEE
Q 033887 83 HVEYANLFLANLEKVLVID 101 (109)
Q Consensus 83 H~~~~~~~~p~~~~~~~~D 101 (109)
-+.+.+.+.++++.-..+.
T Consensus 83 ~~~~~~~l~~lla~~p~I~ 101 (106)
T 3fgv_A 83 DRGDFLEINEYLEVEQDFK 101 (106)
T ss_dssp TCHHHHHGGGGBSSCCEEE
T ss_pred HHHHHHHHHHHhcCCcEEE
Confidence 9999999999987654443
No 41
>3tvz_A Putative uncharacterized protein YHGC; putative monooxygenase, ABM family, ferredoxin fold, monooxy oxidoreductase; 2.00A {Bacillus subtilis subsp}
Probab=97.66 E-value=0.00015 Score=48.59 Aligned_cols=80 Identities=8% Similarity=-0.034 Sum_probs=51.8
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHH
Q 033887 5 KGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHV 84 (109)
Q Consensus 5 ~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~ 84 (109)
..||.-+..|+++++..+ +.++..+.........||-+++++-++... -.+.++..|+|.+++++|..+|+|+
T Consensus 69 ~~m~~vin~~~V~pg~~~-~Fe~~~~~~~~~l~~~pGfi~~~llr~~~~------~~y~~~t~Wes~eaf~aw~~S~~f~ 141 (172)
T 3tvz_A 69 HPGFAVLNNIAVTQEGRP-LFENKFKNRAGKVENEPGFEAIRVLRPLDS------DTYVILTLWETERAFQDWQQSDSYK 141 (172)
T ss_dssp CCSEEEEEEEECCGGGHH-HHHHHHTSSHHHHTTSTTEEEEEEEEESSS------SEEEEEEEESCHHHHHHHTCC----
T ss_pred CCcEEEEEEEEcCCCcHH-HHHHHHHHhHHHHhcCCCceEEEEEecCCC------CEEEEEEEECCHHHHHHHHcCHHHH
Confidence 578999999999987543 343333332333346999999999888641 2578999999999999999999999
Q ss_pred HHHHHHh
Q 033887 85 EYANLFL 91 (109)
Q Consensus 85 ~~~~~~~ 91 (109)
+..+...
T Consensus 142 ~ah~~~g 148 (172)
T 3tvz_A 142 EAHKKRG 148 (172)
T ss_dssp -------
T ss_pred HHHHhcC
Confidence 9887665
No 42
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=97.65 E-value=0.0022 Score=38.74 Aligned_cols=82 Identities=9% Similarity=-0.030 Sum_probs=57.1
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHHHHHH
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYAN 88 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~~~~~ 88 (109)
.=|+..+++ +++..++..+.....-.+..|-.-+. |.....+|. ..++..++++|+|.++..++.++|++|++.+
T Consensus 6 Y~i~~~~v~---d~e~y~~Y~~~~~~~l~~~GG~~l~r-g~~~~lEG~-~~~~~~viieFps~~aa~a~y~SpeYq~a~~ 80 (94)
T 3lo3_A 6 YIIVGLTPK---DAEKLQQYGARVASTLAKYSGEVLVK-GSVEQLHGK-FEHKAQVILEFPSREDAYNWYHSEEYQALIS 80 (94)
T ss_dssp EEEEEEEEC---CHHHHHHHHHHHHHHHHTTTCEEEEE-EECEEEESC-CCCSEEEEEEESSHHHHHHHHHSHHHHTTHH
T ss_pred EEEEEEEEC---CHHHHHHHHHHHHHHHHHcCCEEEEE-cccccccCC-CCCCeEEEEECCCHHHHHHHHCCHHHHHHHH
Confidence 335555665 57778888777766666666644443 433334332 2479999999999999999999999999888
Q ss_pred HHhhhhc
Q 033887 89 LFLANLE 95 (109)
Q Consensus 89 ~~~p~~~ 95 (109)
.-..-++
T Consensus 81 ~R~~a~~ 87 (94)
T 3lo3_A 81 TRDLGMD 87 (94)
T ss_dssp HHHHHEE
T ss_pred HHHhcCc
Confidence 5544443
No 43
>3fj2_A Monooxygenase-like protein; structural genomics, joint cente structural genomics, JCSG, protein structure initiative, PS unknown function; HET: MSE; 1.85A {Listeria innocua} PDB: 3fez_A*
Probab=97.53 E-value=0.0015 Score=44.33 Aligned_cols=80 Identities=11% Similarity=0.063 Sum_probs=59.8
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHHH
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVE 85 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~~ 85 (109)
.++.-+..|+++++. .++.++....+...-...||-+++..-++.. +=.+.+++.|+|++++++|..+++|++
T Consensus 84 ~gfvv~n~~~V~~g~-~~~Fe~~f~~~~~~l~~~pGFis~eLLr~~~------~~~yv~lT~WeseeaF~aW~~S~afr~ 156 (186)
T 3fj2_A 84 FGIVVFEYIQLRDEE-IPIFLQMYQHASLHFSETPGLQSTKLTKAMN------TNQFLIVSFWDSEVFFQEWKKTPLHKE 156 (186)
T ss_dssp CSEEEEEEEECCGGG-HHHHHHHHHHHHTTGGGSTTEEEEEEEEETT------SSEEEEEEEESSHHHHHHHTTSHHHHH
T ss_pred CCEEEEEEEEcCccc-HHHHHHHHHHhHHhhhcCCCceEEEEEecCC------CCEEEEEEEECCHHHHHHHHcCHHHHH
Confidence 467777888888775 3344444444443445699999999999875 236789999999999999999999999
Q ss_pred HHHHHhh
Q 033887 86 YANLFLA 92 (109)
Q Consensus 86 ~~~~~~p 92 (109)
.-+-+++
T Consensus 157 ah~~l~~ 163 (186)
T 3fj2_A 157 ITSIMKK 163 (186)
T ss_dssp HHHHHHH
T ss_pred HHHhhhc
Confidence 8855544
No 44
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=97.42 E-value=0.0067 Score=36.90 Aligned_cols=83 Identities=7% Similarity=0.020 Sum_probs=56.6
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHHHHH
Q 033887 8 VKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEYA 87 (109)
Q Consensus 8 i~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~~~~ 87 (109)
-.=|+.+++. +++..++..+.....-.+..|-.-+..|.....++...+ -.++++|+|.++.+++.++|++|+..
T Consensus 6 ~Y~I~~~~v~---d~e~y~~Y~~~~~~~~~~~gGr~l~~g~~~~~~eG~~~~--~~viieFpS~~aa~~~~~s~~Yq~a~ 80 (99)
T 2fiu_A 6 GYWIAQVDVR---DSERYKDYVSTAKPAFERFGANFLARGGSVTELEGTARA--RNVVIEFPSVQHAIDCYNSPEYQAAA 80 (99)
T ss_dssp EEEEEEEEES---CHHHHHHHHHHHHHHHHHTTCEEEEESCCEEEEESCCCS--EEEEEEESSHHHHHHHHHSHHHHHHH
T ss_pred EEEEEEEEeC---CHHHHHHHHHHHHHHHHHcCcEEEEECCCceEEecCCcC--eEEEEECCCHHHHHHHHcCHHHHHHH
Confidence 3445555654 577788887766666556777555554444333332233 78899999999999999999999999
Q ss_pred HHHhhhhc
Q 033887 88 NLFLANLE 95 (109)
Q Consensus 88 ~~~~p~~~ 95 (109)
+.-...++
T Consensus 81 ~~R~~a~~ 88 (99)
T 2fiu_A 81 KIRQEVAD 88 (99)
T ss_dssp HHHHHHEE
T ss_pred HHHHhhhc
Confidence 85555444
No 45
>3mcs_A Putative monooxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.55A {Fusobacterium nucleatum subsp}
Probab=97.39 E-value=0.0045 Score=42.88 Aligned_cols=97 Identities=4% Similarity=-0.068 Sum_probs=74.6
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHH
Q 033887 5 KGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHV 84 (109)
Q Consensus 5 ~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~ 84 (109)
..++.=++-|+.||+..++-.+.+.+.+..-. .=||.+.+.+.++... .-.+.++=.|+|.+++++-...|..+
T Consensus 111 ~~~~~via~~~vkp~~~e~~~~~~~~~~~~sr-~E~Gcl~y~~~~~~~~-----p~~f~~~E~w~d~~A~~aH~~s~Hf~ 184 (219)
T 3mcs_A 111 DNTFAVYTVIDVKPENDKEFAEIIKNIVETTF-NEEGTLLVYLGTDRRN-----FNKWCLFEVYKDIDSYLNHRSAKYFK 184 (219)
T ss_dssp TTCEEEEEEEEECGGGHHHHHHHHHHHHHHHH-HSTTEEEEEEEEETTE-----EEEEEEEEEESSHHHHHHHHTSHHHH
T ss_pred CCcEEEEEEEEECcCcHHHHHHHHHHHHHHHc-CCCCeEEEEEEecCCC-----CCEEEEEEEECCHHHHHHHhcCHHHH
Confidence 34677788999998754433333333333333 3599999999998742 23689999999999999999999999
Q ss_pred HHHHHHhhhhcceEEEEeecCee
Q 033887 85 EYANLFLANLEKVLVIDYKPTTV 107 (109)
Q Consensus 85 ~~~~~~~p~~~~~~~~D~~~~~~ 107 (109)
++.+.+.+++++..+.+.....+
T Consensus 185 ~~~~~~~~~l~~~~~~~l~~~~l 207 (219)
T 3mcs_A 185 DYITQTKDMIAGKKRAELQVLKI 207 (219)
T ss_dssp HHHHHHGGGEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhCCceeeccchhe
Confidence 99999999999888888777654
No 46
>3f44_A Putative monooxygenase; YP_193413.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.55A {Lactobacillus acidophilus ncfm}
Probab=97.39 E-value=0.0042 Score=42.84 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=71.0
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHH
Q 033887 5 KGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHV 84 (109)
Q Consensus 5 ~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~ 84 (109)
...|.+++-|+.||+.-++-.+.+.+.+..-...=||-+.+.++++.. ++-.+.++=.|.|.+++++-.+.|..+
T Consensus 4 ~~pi~~i~~~~vkp~~~~~f~~~~~~~~~~s~~~E~G~l~y~~~~~~~-----~p~~~~~~E~y~d~~A~~~H~~s~h~~ 78 (220)
T 3f44_A 4 ETPIFKIKKLTIAENDRSEYIRYAEKNMHDSIPAEEGTLLIGSGHDDA-----HGEDNYEIEVFRNKGAEDLHIAGSHAD 78 (220)
T ss_dssp CCCEEEEEEEEECGGGHHHHHHHHHHHHHHHTTTSTTEEEEEEEEETT-----EEEEEEEEEEESSHHHHHHHHTSHHHH
T ss_pred CCcEEEEEEEEECcchHHHHHHHHHHHhhhhhccCCCeEEEEEEecCC-----CCcEEEEEEEECCHHHHHHHhcCHHHH
Confidence 457899999999987543333333332222212349999999998753 334789999999999999999999999
Q ss_pred HHHHHHhhhhcceEEEEeec
Q 033887 85 EYANLFLANLEKVLVIDYKP 104 (109)
Q Consensus 85 ~~~~~~~p~~~~~~~~D~~~ 104 (109)
+|.+.+.+++++..+++-..
T Consensus 79 ~~~~~~~~~l~~~~~~~l~p 98 (220)
T 3f44_A 79 DFVETVNKIATKQKVIDLHP 98 (220)
T ss_dssp HHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHhhCCceeeeee
Confidence 99999999988776665544
No 47
>1lq9_A Actva-ORF6 monooxygenase; aromatic polyketides, actinorhodin, dihydroka streptomyces coelicolor, oxidoreductase; HET: PG4; 1.30A {Streptomyces coelicolor} SCOP: d.58.4.3 PDB: 1n5q_A* 1n5s_A* 1n5t_A* 1n5v_A*
Probab=97.23 E-value=0.0012 Score=41.16 Aligned_cols=84 Identities=8% Similarity=-0.012 Sum_probs=60.5
Q ss_pred eEEEEEEEEe-CCCCCHHHHHHHHHHHHhh----hhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh----
Q 033887 7 VVKHVLLAKF-KEGTAQDQIDQLIKDYANL----VNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY---- 77 (109)
Q Consensus 7 mi~HiVlf~~-k~~~~~~~~~~~~~~l~~L----~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y---- 77 (109)
-+..++-|.. |++ ..+++++.+..+ ...-||-+++..-++.. +-+.+++..++|.++++++
T Consensus 9 ~~v~iva~~~~~pg----~~~~~~~~l~~~~~~~~r~epG~i~y~Lh~~~d------~~~~v~~e~W~s~ea~~ah~~~~ 78 (112)
T 1lq9_A 9 GFVAVVTFPVDGPA----TQHKLVELATGGVQEWIREVPGFLSATYHASTD------GTAVVNYAQWESEQAYRVNFGAD 78 (112)
T ss_dssp CEEEEEEEEBSSHH----HHHHHHHHHTTTTTGGGGGSTTEEEEEEEEETT------SSEEEEEEEESCHHHHHHHTTTS
T ss_pred CEEEEEEEEecCcc----hHHHHHHHHHHHHHHHhhcCCCeEEEEEEEcCC------CCeEEEEEEECCHHHHHHHHhcc
Confidence 3555666655 544 444444444443 34689999999988753 2345999999999999999
Q ss_pred hcChhHHHHHHHHhhhhcceEEE
Q 033887 78 VAHPAHVEYANLFLANLEKVLVI 100 (109)
Q Consensus 78 ~~hp~H~~~~~~~~p~~~~~~~~ 100 (109)
..+|.-+++.+.+..+++...++
T Consensus 79 ~~s~~f~~~~~~~~~l~~~~~~~ 101 (112)
T 1lq9_A 79 PRSAELREALSSLPGLMGPPKAV 101 (112)
T ss_dssp HHHHHHHHHHHTSTTBCSCCEEE
T ss_pred cCCHHHHHHHHHhHHHhcCccce
Confidence 99999999999888887655433
No 48
>3mcs_A Putative monooxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.55A {Fusobacterium nucleatum subsp}
Probab=97.04 E-value=0.016 Score=40.03 Aligned_cols=89 Identities=7% Similarity=-0.016 Sum_probs=66.4
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHH
Q 033887 5 KGVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHV 84 (109)
Q Consensus 5 ~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~ 84 (109)
...|..++-|+.||+.-++-.+.+.+.+..-...=||-+.+.+.++.. ++-.+.++=.|+|.+|+++=.+.|..+
T Consensus 4 ~~pi~~ia~~~vkp~~~~~f~~~~~~~~~~s~r~EpG~l~y~~~~~~~-----~p~~fv~~E~y~d~~A~~~H~~s~Hf~ 78 (219)
T 3mcs_A 4 AVPILNVYDFEVKKDKETSYKSATEDYVNKTMGVEQGVLGLFAATDER-----DKTTSYIVEIYNDYLAFSNHTKNQASK 78 (219)
T ss_dssp SCCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCSSEEEEEEEEECS-----SSCEEEEEEEESSHHHHHHHHHSHHHH
T ss_pred CccEEEEEEEEECcCcHHHHHHHHHHHhhhhhhcCCCeEEEEEEeeCC-----CCCEEEEEEEECCHHHHHHHhCCHHHH
Confidence 356899999999987543333333332222212349999999999864 334789999999999999999999999
Q ss_pred HHHHHHhhhhcceE
Q 033887 85 EYANLFLANLEKVL 98 (109)
Q Consensus 85 ~~~~~~~p~~~~~~ 98 (109)
++.+.+.+++++..
T Consensus 79 ~f~~~~~~~l~~~~ 92 (219)
T 3mcs_A 79 DFKAVIPQIAEGNL 92 (219)
T ss_dssp HHHHHHHHHEEEEE
T ss_pred HHHHHHHHHHhCCc
Confidence 99999999987643
No 49
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=95.44 E-value=0.068 Score=32.31 Aligned_cols=44 Identities=11% Similarity=0.219 Sum_probs=39.7
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeecc
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNV 51 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~ 51 (109)
.|.+..|...+|+++.+.+-+++..++..| .+.+|.+++.|+-.
T Consensus 14 ~~~~~~V~V~lKpgVlDPqG~aV~~aL~~L--G~~~V~~VR~GK~~ 57 (94)
T 1vq3_A 14 PLFKFAIDVQYRSNVRDPRGETIERVLREE--KGLPVKKLRLGKSI 57 (94)
T ss_dssp CEEEEEEEEEECTTSCCHHHHHHHHHHHHT--TCCCEEEEEEEEEE
T ss_pred ceEEEEEEEEECCCCcCcHHHHHHHHHHHc--CCCccceeeeeeEE
Confidence 588899999999999988999999999999 48999999999875
No 50
>4ae5_A Signal transduction protein trap; signaling protein, phosphorylation, RNAIII, quorum SENS biofilm, toxin production; 1.85A {Staphylococcus aureus}
Probab=95.33 E-value=0.077 Score=35.26 Aligned_cols=73 Identities=14% Similarity=0.077 Sum_probs=49.7
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHHHH
Q 033887 7 VVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVEY 86 (109)
Q Consensus 7 mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~~~ 86 (109)
++.-+-.|+++++.-++-.+.+.+....| +..||-.++.+=++.. +. ++.++..|+|.+++++|..+++.++.
T Consensus 66 gfiv~N~~~V~~g~~~~fE~rf~~r~~~l-~~~pGF~~f~LLr~~~----~~--~y~v~T~Wes~e~Fe~W~~S~aFr~a 138 (167)
T 4ae5_A 66 HFYCAIFIPSTEDHAYQLEKKLISVDDNF-RNFGGFKSYRLLRPAK----GT--TYKIYFGFADRHAYEDFKQSDAFNDH 138 (167)
T ss_dssp SEEEEEEECCCTTTHHHHHHHHHTSCGGG-GGSTTEEEEEEEEESS----SS--CEEEEEEESSHHHHHHHHHSHHHHTT
T ss_pred cEEEEEEEEcCCChHHHHHHHHHhhhccc-cCCCCcEEEEEeecCC----CC--cEEEEEEECCHHHHHHHhcCHHHHHH
Confidence 45556667777664332223333333455 4689999999888753 12 57888999999999999999876653
No 51
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=93.26 E-value=0.34 Score=28.36 Aligned_cols=43 Identities=19% Similarity=0.147 Sum_probs=36.4
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeecc
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNV 51 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~ 51 (109)
+|....|...+|++..+.+-+++..++..| .++ +.+++.|+-.
T Consensus 2 ~m~~~~V~V~lK~gVlDpqG~av~~al~~L--G~~-v~~VR~gK~~ 44 (84)
T 2dgb_A 2 PRYQATLLIELKKGILDPQGRAVEGVLKDL--GHP-VEEVRVGKVL 44 (84)
T ss_dssp CEEEEEEEEEECTTSCCHHHHHHHHHHHHT--TCC-CSEEEEEEEE
T ss_pred CceEEEEEEEECCCCcChHHHHHHHHHHHC--CCC-hhhEEEEEEE
Confidence 478899999999999888888998888887 367 9999888875
No 52
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=93.17 E-value=0.34 Score=28.41 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=36.6
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccC
Q 033887 7 VVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVS 52 (109)
Q Consensus 7 mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~ 52 (109)
|....|...+|++..+.+-+++..++..| .+ ++.+++.|+-..
T Consensus 2 m~~~~V~V~lK~gVlDpqG~av~~al~~L--G~-~v~~VR~gK~~~ 44 (85)
T 1gtd_A 2 KFMVEVRIRLKKGMLNPEAATIERALALL--GY-EVEDTDTTDVIT 44 (85)
T ss_dssp CEEEEEEEEECTTSCCHHHHHHHHHHHHH--TC-CCEEEEEEEEEE
T ss_pred CeEEEEEEEECCCCcCcHHHHHHHHHHHc--CC-ChheEEEEEEEE
Confidence 66788999999999888888999999777 37 999999988763
No 53
>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase; 1.55A {Sulfolobus tokodaii}
Probab=92.71 E-value=0.37 Score=28.75 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=37.5
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccC
Q 033887 7 VVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVS 52 (109)
Q Consensus 7 mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~ 52 (109)
|....|...+|++..+.+-+++..++..| .+.+|.+++.|+-+.
T Consensus 5 m~~~~V~V~lK~gVlDPqG~av~~al~~L--G~~~V~~VR~gK~~~ 48 (92)
T 2zw2_A 5 LYRVELIITNKEGVRDPEGETIQRYVVSR--FSDKIIETRAGKYLV 48 (92)
T ss_dssp EEEEEEEEEECTTSCCHHHHHHHHHTHHH--HCTTEEEEEEEEEEE
T ss_pred cEEEEEEEEECCCCcCcHHHHHHHHHHHc--CCCChhheEEEEEEE
Confidence 67899999999999888888888888888 378999999988763
No 54
>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, structural protein; 2.00A {Bacillus subtilis} SCOP: d.284.1.1 PDB: 1twj_A
Probab=92.49 E-value=0.57 Score=27.36 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=36.9
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccC
Q 033887 7 VVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVS 52 (109)
Q Consensus 7 mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~ 52 (109)
|....|...+|++..+.+-+++..++..| .+.++.+++.|+-..
T Consensus 1 ~~~~~V~V~lK~gVlDpqG~av~~al~~L--G~~~v~~VR~gK~~~ 44 (84)
T 1t4a_A 1 MYKVKVYVSLKESVLDPQGSAVQHALHSM--TYNEVQDVRIGKYME 44 (84)
T ss_dssp CEEEEEEEEECTTSCCHHHHHHHHHHHHT--TCTTEEEEEEEEEEE
T ss_pred CeEEEEEEEECCCCcCcHHHHHHHHHHHc--CCCChhheEEEEEEE
Confidence 45678889999999888888888888888 488999999998763
No 55
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=91.18 E-value=1.3 Score=25.58 Aligned_cols=57 Identities=7% Similarity=0.161 Sum_probs=40.6
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhc
Q 033887 7 VVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 79 (109)
Q Consensus 7 mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~ 79 (109)
|+.=.|..+++++ ..+++.+ .|. .+|+|..+.. ..+.||+.+.+.++|.++|+.+..
T Consensus 1 mv~A~v~v~~~~~----~~~~~~~---~l~-~~peV~~~~~--------vtG~~D~ll~v~~~d~~~l~~~l~ 57 (92)
T 2djw_A 1 MITAFVLIRPRGN----RVQALGE---AIA-ELPQVAEVYS--------VTGPYDLVALVRLKDVEELDDVVT 57 (92)
T ss_dssp CEEEEEEEEECGG----GHHHHHH---HHT-TSTTEEEEEE--------ESSSSSEEEEEEESSGGGHHHHCC
T ss_pred CEEEEEEEEEcCC----CHHHHHH---HHh-cCCCeEEEEE--------eecCCCEEEEEEECCHHHHHHHHH
Confidence 4566777888754 2344443 444 4788987721 357899999999999999999874
No 56
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=91.05 E-value=1.3 Score=25.17 Aligned_cols=57 Identities=11% Similarity=0.247 Sum_probs=39.9
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhc
Q 033887 7 VVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 79 (109)
Q Consensus 7 mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~ 79 (109)
|+.=.|..+++++. .+++.+ .|. .+|+|..+. . .+++||+.+.+.++|.++|+.+..
T Consensus 1 mv~A~v~v~~~~~~----~~~~~~---~l~-~~peV~e~~---~-----vtG~~D~ll~v~~~d~~~l~~~i~ 57 (83)
T 2cvi_A 1 MVTAFILMVTAAGK----EREVME---KLL-AMPEVKEAY---V-----VYGEYDLIVKVETDTLKDLDQFIT 57 (83)
T ss_dssp CEEEEEEEEECTTC----HHHHHH---HHH-TSTTEEEEE---E-----CBSSCSEEEEEEESSHHHHHHHHH
T ss_pred CEEEEEEEEEcCCC----HHHHHH---HHh-CCCCeeEEE---E-----EcccCCEEEEEEECCHHHHHHHHH
Confidence 45556777887653 244444 443 478898772 1 357899999999999999988764
No 57
>2cb2_A Sulfur oxygenase reductase; oxidoreductase, mononuclear non-heme iron, biogeochemical sulfur cycle, extremophIle, thermophilic, acidophilic; 1.7A {Acidianus ambivalens} SCOP: d.58.4.17 PDB: 2yav_A 2yaw_A 2yax_A* 2yax_B* 3bxv_A
Probab=90.91 E-value=3.2 Score=29.86 Aligned_cols=80 Identities=13% Similarity=0.098 Sum_probs=61.5
Q ss_pred EeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccC-----------------------------------ccccCCC
Q 033887 15 KFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVS-----------------------------------IENLHQG 59 (109)
Q Consensus 15 ~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-----------------------------------~~~~~~~ 59 (109)
++|++-..+-.+.+.+.|..|+ ..||.+.+.+=+.+. ++.++..
T Consensus 167 ~Vk~G~EKeFEe~~~~tLe~lk-~apGflG~MIlKeIGvs~iGSfql~~~g~~~~l~t~g~~pP~~~~~~~~~~e~~~~P 245 (318)
T 2cb2_A 167 SVIPGKEKQFEDAIVRTLEMLK-KAPGFLGAMVLKEIGVSGIGSMQFGAKGFHQVLENPGSLEPDPNNVMYSVPEAKNTP 245 (318)
T ss_dssp EECTTCHHHHHHHHHHHHHHHT-TSTTEEEEEEEEEEEECTTTTTCCCHHHHHHHHTCCSSSCCCGGGCCSCTGGGCCBS
T ss_pred eeccchHHHHHHHHHHHHHHHh-cCCCcchhHHHHHhccccccccccCchHHHHHhhhccCCCCCcccccccccccCCCC
Confidence 6789887666677888889998 699988876655441 1122445
Q ss_pred ccEEEEEEECCHHh----HHHhhcChhHHHHHHHHhhhhc
Q 033887 60 FTHIFESTFESTEG----VAEYVAHPAHVEYANLFLANLE 95 (109)
Q Consensus 60 ~~~~~~~~F~s~e~----l~~Y~~hp~H~~~~~~~~p~~~ 95 (109)
=.|.+.++++|.++ +..+..+|+.+++.+..+..++
T Consensus 246 ~eYlVH~EW~d~esa~fGf~rv~vs~e~R~iHd~gl~tL~ 285 (318)
T 2cb2_A 246 QQYIVHVEWANTDALMFGMGRVLLYPELRQVHDEVLDTLV 285 (318)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHSHHHHHHHHHHHTTEE
T ss_pred cceEEEEEecCchhhhhhHHHhhcCHHHHHHHHHHhhhhc
Confidence 67899999999999 9999999999999886665554
No 58
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=90.46 E-value=0.42 Score=27.86 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=34.5
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeecc
Q 033887 7 VVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNV 51 (109)
Q Consensus 7 mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~ 51 (109)
|....|...+|++..+.+-+++..++..| .+.++.+++.|+-.
T Consensus 1 ~~~~~V~V~lK~gvlDpqG~av~~al~~l--G~~~v~~Vr~gk~~ 43 (83)
T 2yx5_A 1 MYKATVIIKLKKGVLNPEGRTIQRALNFL--GFNNVKEVQTYKMI 43 (83)
T ss_dssp CEEEEEEEEECTTCCCHHHHHHHHHHHHT--TCTTCCCCCCCEEE
T ss_pred CeEEEEEEEECCCCcCcHHHHHHHHHHHc--CCCChhhEEEEEEE
Confidence 45678889999999888888999988877 47788777776654
No 59
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=88.66 E-value=2 Score=23.98 Aligned_cols=57 Identities=11% Similarity=0.253 Sum_probs=39.4
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhc
Q 033887 7 VVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 79 (109)
Q Consensus 7 mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~ 79 (109)
|+.=.|..+++++. .+++.+ .|. .+|+|..+.. .+++||+.+.+...|.++|+.+..
T Consensus 1 mv~a~v~v~~~~~~----~~~~~~---~l~-~~peV~~~~~--------vtG~~d~l~~v~~~d~~~l~~~~~ 57 (83)
T 2zbc_A 1 MASAIVLINTDAGG----EDEVFE---RLK-SMSEVTEVHV--------VYGVYDIVVKVEADSMDKLKDFVT 57 (83)
T ss_dssp -CEEEEEEEESTTC----HHHHHH---HHT-TCTTEEEEEE--------CSSSCSEEEEEECSSHHHHHHHHH
T ss_pred CeEEEEEEEEcCCC----HHHHHH---HHh-CCCCeEEEEE--------EeccCCEEEEEEECCHHHHHHHHH
Confidence 45556778887653 234443 443 4788887621 357899999999999999987763
No 60
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=88.02 E-value=3.7 Score=26.24 Aligned_cols=59 Identities=3% Similarity=0.073 Sum_probs=41.9
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhc
Q 033887 8 VKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 79 (109)
Q Consensus 8 i~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~ 79 (109)
+.=+|.++++++ .++..+++.+.+.+ +|+|..+.. ..+.||+.+.+.+.|.++++.+..
T Consensus 63 ~~a~v~v~v~~~-~~~~~~~~~~~l~~----~peV~~~~~--------vtG~~D~~l~v~~~d~~~l~~~l~ 121 (162)
T 3i4p_A 63 VTVFVSIRTASH-SIEWLKRFSEVVSE----FPEVVEFYR--------MSGDVDYLLRVVVPDIAAYDAFYK 121 (162)
T ss_dssp EEEEEEEECCSC-CHHHHHHHHHHHHH----CTTEEEEEE--------CCSSCSEEEEEEESSHHHHHHHHH
T ss_pred EEEEEEEEEcCC-ChHHHHHHHHHHhc----CCCEEEeee--------cCCCCCEEEEEEECCHHHHHHHHH
Confidence 445677777664 34556677664443 688887743 246799999999999999988754
No 61
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=87.47 E-value=3.9 Score=25.95 Aligned_cols=57 Identities=9% Similarity=0.160 Sum_probs=39.4
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 8 VKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 8 i~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
+.=.|.++++++. +..+++.+ .+. .+|+|..+.. .++.||+.+.+.+.|.++++.+.
T Consensus 70 ~~a~v~v~~~~~~--~~~~~~~~---~l~-~~peV~~~~~--------vtG~~d~~~~v~~~d~~~l~~~l 126 (162)
T 2p5v_A 70 LQAFIRVSIRKAK--DAREDFAA---SVR-KWPEVLSCFA--------LTGETDYLLQAFFTDMNAFSHFV 126 (162)
T ss_dssp EEEEEEEEECSST--THHHHHHH---HHT-TCTTEEEEEE--------ESSSCSEEEEEEESSHHHHHHHH
T ss_pred EEEEEEEEEcCCc--hHHHHHHH---HHh-cChhhhEeee--------ecCCCCEEEEEEECCHHHHHHHH
Confidence 3345567777654 34555555 343 3788887643 23679999999999999999865
No 62
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=79.31 E-value=8.9 Score=23.76 Aligned_cols=45 Identities=13% Similarity=0.097 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 22 QDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 22 ~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
++..+++.+.+. .+|+|..+.. .++.||+.+.+..+|.++++.+.
T Consensus 75 ~~~~~~~~~~l~----~~p~V~~~~~--------~tG~~d~~~~v~~~d~~~l~~~l 119 (150)
T 2pn6_A 75 KNYHVELGNKLA----QIPGVWGVYF--------VLGDNDFIVMARYKTREEFMEKF 119 (150)
T ss_dssp TTHHHHHHHHHH----TSTTEEEEEE--------CSSSCSEEEEEEESSHHHHHHHT
T ss_pred hhHHHHHHHHHh----cCchhhhhhh--------hcCcCCEEEEEEECCHHHHHHHH
Confidence 345566655443 3688877642 24679999999999999999876
No 63
>3a16_A Oxdre, aldoxime dehydratase; beta barrel, heme protein, lyase; HET: HEM; 1.60A {Rhodococcus erythropolis} PDB: 3a15_A* 3a17_A* 3a18_A*
Probab=79.06 E-value=17 Score=26.95 Aligned_cols=84 Identities=12% Similarity=0.170 Sum_probs=58.0
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHH--------Hhhhhc--CCCeeEEEeeeccCcccc--CCCccEEEEEEECCHHhH
Q 033887 7 VVKHVLLAKFKEGTAQDQIDQLIKDY--------ANLVNL--IEPMKSFQWGKNVSIENL--HQGFTHIFESTFESTEGV 74 (109)
Q Consensus 7 mi~HiVlf~~k~~~~~~~~~~~~~~l--------~~L~~~--ip~i~~~~~G~~~~~~~~--~~~~~~~~~~~F~s~e~l 74 (109)
=|.+|.--+-=..+++++++..++.+ .-|.+. --|..+.++-.+.+.++. +..| -..-|.|.++|
T Consensus 233 Nl~~IRSGQdWs~~~~eEr~~Y~e~~eP~L~~Gm~fLrd~g~~~Gc~s~R~~~~~D~~g~~~~~t~---~lgyf~dL~~L 309 (373)
T 3a16_A 233 NIALIRSGQDWADAEADERSLYLDEILPTLQSGMDFLRDNGPAVGCYSNRFVRNIDIDGNFLDLSY---NIGHWASLDQL 309 (373)
T ss_dssp TEEEEEEEEECTTCCHHHHHHHHHTHHHHHHHHHHHHHHSHHHHTEEEEEEEEEECTTSCEEEEEE---EEEEESCHHHH
T ss_pred cEEEEecCCccccCCHHHHHHHHHhccHHHHHHHHHHHhCCccCceEeeeeeEeecCCCCeeccee---eeeeecCHHHH
Confidence 47788888888888999987665544 333321 237888888888865332 2222 35679999999
Q ss_pred HHhhc-ChhHHHHHH-HHhhh
Q 033887 75 AEYVA-HPAHVEYAN-LFLAN 93 (109)
Q Consensus 75 ~~Y~~-hp~H~~~~~-~~~p~ 93 (109)
+.+.. ||.|+++.. +++-+
T Consensus 310 ErWaksHpTHl~If~~fm~~~ 330 (373)
T 3a16_A 310 ERWSESHPTHLRIFTTFFRVA 330 (373)
T ss_dssp HHHHHHSHHHHHHHHHHHHHG
T ss_pred HHHHhcCchHHHHHHHHHHHh
Confidence 99876 999999876 55543
No 64
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=77.12 E-value=11 Score=23.51 Aligned_cols=55 Identities=13% Similarity=0.240 Sum_probs=37.2
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 8 VKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 8 i~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
+.=.|.++++++ ..+++.+ .|. .+|+|..+.. .+++||+.+.+.+.|.++++.+.
T Consensus 67 ~~a~v~v~~~~~----~~~~~~~---~l~-~~p~V~~~~~--------~tG~~d~~~~v~~~d~~~l~~~~ 121 (151)
T 2cyy_A 67 MLAFILVKVKAG----KYSEVAS---NLA-KYPEIVEVYE--------TTGDYDMVVKIRTKNSEELNNFL 121 (151)
T ss_dssp EEEEEEEEECTT----CHHHHHH---HHH-TCTTEEEEEE--------CSSSSSEEEEEEESSHHHHHHHH
T ss_pred EEEEEEEEECcc----cHHHHHH---HHh-cCCCeeEeeE--------ecCCCCEEEEEEECCHHHHHHHH
Confidence 334566677643 2444444 333 4788887743 24679999999999999998765
No 65
>2hiq_A Hypothetical protein YDHR; hypothetical protein JW1657, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: d.58.4.12 PDB: 1wd6_A
Probab=73.05 E-value=14 Score=22.82 Aligned_cols=74 Identities=9% Similarity=-0.030 Sum_probs=49.0
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcChhHHH
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHPAHVE 85 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~~ 85 (109)
++..-+|-|++..+..+|-.+.+.+...++. .-||+..=.|..|... -+.+=+=.|+|.++.++|.+-+ .+
T Consensus 8 m~~llqV~F~~~gP~geE~~~~f~~lA~si~-~epGLiwKiWte~e~t------~~aGGiYLFes~~~AeaY~~~h--~a 78 (113)
T 2hiq_A 8 AATLLQLHFAFNGPFGDAMAEQLKPLAESIN-QEPGFLWKVWTESEKN------HEAGGIYLFTDEKSALAYLEKH--TA 78 (113)
T ss_dssp -CEEEEEEEECCCCCHHHHHHHSHHHHHHHT-TSTTEEEEEEEEETTT------TEEEEEEEESSHHHHHHHHHHH--HH
T ss_pred hhEeEEEEecCCCchHHHHHHHHHHHHHHHh-cCCCcEEEEEEEcCCC------CeeeEEEEeCCHHHHHHHHHHH--HH
Confidence 4456778899988874444444555555665 4899887667777643 1334455799999999999864 44
Q ss_pred HHH
Q 033887 86 YAN 88 (109)
Q Consensus 86 ~~~ 88 (109)
..+
T Consensus 79 rl~ 81 (113)
T 2hiq_A 79 RLK 81 (113)
T ss_dssp HHG
T ss_pred HHH
Confidence 443
No 66
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=71.57 E-value=15 Score=22.75 Aligned_cols=56 Identities=7% Similarity=0.123 Sum_probs=38.4
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 8 VKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 8 i~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
+.=.|.++++++. ..+++.+ .|. .+|+|..+.. .++.||+.+.+.+.|.++++.+.
T Consensus 68 ~~a~v~v~~~~~~---~~~~~~~---~l~-~~peV~~~~~--------vtG~~d~~~~v~~~d~~~l~~~l 123 (152)
T 2cg4_A 68 VGCFIGIILKSAK---DYPSALA---KLE-SLDEVTEAYY--------TTGHYSIFIKVMCRSIDALQHVL 123 (152)
T ss_dssp EEEEEEEEESSGG---GHHHHHH---HHH-TCTTEEEEEE--------ESSSCSEEEEEEESCHHHHHHHH
T ss_pred EEEEEEEEECCCC---CHHHHHH---HHh-CCcCeEEEEE--------EecccCEEEEEEECCHHHHHHHH
Confidence 4445666776542 2444444 343 4788988742 24789999999999999999876
No 67
>1tuw_A Tetracenomycin polyketide synthesis protein TCMI; dimeric ??? ferredoxin-like fold tetracenomycin C biosynthes unknown function; 1.90A {Streptomyces glaucescens} SCOP: d.58.4.8
Probab=70.07 E-value=5.5 Score=24.49 Aligned_cols=82 Identities=10% Similarity=0.162 Sum_probs=51.0
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeecc-CccccCCCccEEEEEEECCHHhHHHhhcChhHHH
Q 033887 7 VVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNV-SIENLHQGFTHIFESTFESTEGVAEYVAHPAHVE 85 (109)
Q Consensus 7 mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~-~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp~H~~ 85 (109)
|-+=++..+.+++ +++++.++.+...+ ..+|+.... .++.+ +. .+=|-|.+..+=+..+++.....||.-++
T Consensus 2 M~r~lIVaRm~pg-~~~~VA~iFae~D~--telP~~~Gv-~rR~LF~~---~dlY~HLie~d~d~~~~i~~~r~~P~f~~ 74 (109)
T 1tuw_A 2 AYRALMVLRMDPA-DAEHVAAAFAEHDT--TELPLEIGV-RRRVLFRF---HDLYMHLIEADDDIMERLYQARSHPLFQE 74 (109)
T ss_dssp CEEEEEEEEECGG-GHHHHHHHHHHHTT--SSHHHHHTC-CEEEEEEE---TTEEEEEEEESSCCHHHHHHTTSCGGGHH
T ss_pred CceEEEEEeeCCC-CHHHHHHHHHhcCC--CcCchhcCc-eeeEEEEe---CCEEEEEEeccCCchHHHHHHhcCcHHHH
Confidence 4455667788877 56667777665533 234443332 34444 22 22244444444345666888889999999
Q ss_pred HHHHHhhhhc
Q 033887 86 YANLFLANLE 95 (109)
Q Consensus 86 ~~~~~~p~~~ 95 (109)
+.+.++|++.
T Consensus 75 i~~~L~~yi~ 84 (109)
T 1tuw_A 75 VNERVGQYLT 84 (109)
T ss_dssp HHHHHHTTEE
T ss_pred HHHHHHHhcC
Confidence 9999999875
No 68
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=67.26 E-value=22 Score=22.84 Aligned_cols=55 Identities=13% Similarity=0.240 Sum_probs=38.0
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 8 VKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 8 i~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
+.=.|.++++++ ..+++.+ .|. .+|+|..+.. .+++||+.+.+.+.|.++++.+.
T Consensus 87 ~~a~v~v~~~~~----~~~~v~~---~l~-~~peV~~~~~--------vtG~~d~l~~v~~~d~~~l~~~l 141 (171)
T 2e1c_A 87 MLAFILVKVKAG----KYSEVAS---NLA-KYPEIVEVYE--------TTGDYDMVVKIRTKNSEELNNFL 141 (171)
T ss_dssp EEEEEEEEECTT----CHHHHHH---HHH-TSTTEEEEEE--------CSSSSSEEEEEEESSHHHHHHHH
T ss_pred EEEEEEEEECcc----hHHHHHH---HHh-cCcCeEEEEE--------eeCCCCEEEEEEECCHHHHHHHH
Confidence 444667788743 2444444 333 4788887732 24689999999999999999775
No 69
>3gn6_A CT0912, orfan protein with A ferredoxin-like DOMA; orfan protein from chlorobium tepidum W ferredoxin-like domain repeat; HET: 2PE; 1.80A {Chlorobium tepidum tls}
Probab=66.93 E-value=32 Score=24.53 Aligned_cols=84 Identities=8% Similarity=0.015 Sum_probs=57.9
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHhhh---hcCCCeeEEEeeecc--C------c---------------cccCCC
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQLIKDYANLV---NLIEPMKSFQWGKNV--S------I---------------ENLHQG 59 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~---~~ip~i~~~~~G~~~--~------~---------------~~~~~~ 59 (109)
+.+.-..=|++ .+.+.+.++.++.++. ..+||.++++.-.-. | | +.....
T Consensus 38 gpvTlY~EfrV----~~~~~~~ll~~i~~~~a~l~~~~GflsltLKqMvGDSTMVkNYP~~yKGVL~tAY~daa~~gt~P 113 (321)
T 3gn6_A 38 QALTLYAEMRV----VPAHHDAFLAAIDTVSAKLRVLPGFLSLALKQMSGDSTMVKNYPETYKGVLATAYLDGVAAGTQP 113 (321)
T ss_dssp SCEEEEEEEEE----CHHHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEEECSGGGTCCGGGTTTTTTHHHHHHHHTSSC
T ss_pred CceEEEEEEec----ccccHHHHHHHHHHhHHHhhcCccHHHHHHHHhcCchhhhhcCcHHHHHHHHHHHHhHHhcCCcc
Confidence 34444555555 5677788877776662 368999988763222 0 1 124578
Q ss_pred ccEEEEEEECCHHhHHHhhcChhHHHHHHHHhhhhcc
Q 033887 60 FTHIFESTFESTEGVAEYVAHPAHVEYANLFLANLEK 96 (109)
Q Consensus 60 ~~~~~~~~F~s~e~l~~Y~~hp~H~~~~~~~~p~~~~ 96 (109)
|.+.+.++|+|.++.. ....|..|...+.|++..
T Consensus 114 ~Fy~LfvRFad~~~~~---aa~~~a~F~~~I~P~Lh~ 147 (321)
T 3gn6_A 114 YFYNLFVRFADGRAAR---AAGFEALFETHIHPLLHA 147 (321)
T ss_dssp EEEEEEEEESSHHHHH---HTCHHHHHHHHTGGGCBC
T ss_pred hhhhhhhhccccccch---hcchHHHHHHHhhHHhhh
Confidence 9999999999999994 456677788888888765
No 70
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=66.35 E-value=17 Score=21.32 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCc-cccCCCccEEEEEEECCHHhHH
Q 033887 20 TAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSI-ENLHQGFTHIFESTFESTEGVA 75 (109)
Q Consensus 20 ~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~-~~~~~~~~~~~~~~F~s~e~l~ 75 (109)
.+++..+++.+.|+.+..+...|.++.+-++... .+++.|+ ..++|.+.++-+
T Consensus 20 ~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~---~fV~f~~~~~A~ 73 (105)
T 3v4m_A 20 LDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK---IFVEFTSVFDCQ 73 (105)
T ss_dssp SSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTE---EEEEESSHHHHH
T ss_pred cChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEE---EEEEECCHHHHH
Confidence 3555678888999999988889999988766531 1134454 567898886543
No 71
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=63.68 E-value=23 Score=21.83 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=35.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEE-CCHHhHHHhh
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTF-ESTEGVAEYV 78 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F-~s~e~l~~Y~ 78 (109)
.|.++++ +...+++.+ .|. .+|+|..+.. .++.||+.+.+.+ .|.++++.+.
T Consensus 72 ~v~v~~~----~~~~~~~~~---~l~-~~peV~~~~~--------vtG~~d~~~~v~~~~d~~~l~~~~ 124 (151)
T 2dbb_A 72 VLIKSKV----PSDADKVIS---EIS-DIEYVKSVEK--------GVGRYNIIVRLLLPKDIKDAENLI 124 (151)
T ss_dssp EEEEESS----HHHHHHHHH---HHT-TCTTEEEEEE--------EESSCSEEEEEEEESSHHHHHHHH
T ss_pred EEEEEeC----CCCHHHHHH---HHH-cCCCeEEEeE--------ecCCCCEEEEEEEcCCHHHHHHHH
Confidence 4455554 334454444 443 4788887742 2467999999999 9999998765
No 72
>1vqs_A Hypothetical protein AGR_L_1239; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: MSE SO4; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.4.13 PDB: 2ap6_A
Probab=63.45 E-value=22 Score=21.44 Aligned_cols=84 Identities=11% Similarity=0.004 Sum_probs=53.5
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHH-HHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh----cC
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQLIK-DYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV----AH 80 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~~~-~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~----~h 80 (109)
-|+.=+..+++||+.-++-.+.+.+ .+..... . |..-+-+..+.. | ..-.+..+..|+|.++++++. .+
T Consensus 12 ~~~yElR~Y~i~Pg~~~~~~~~~~~~~i~~~~~-~-g~~~vG~~~~~~--G--~ln~v~~Lw~y~sl~~r~~~r~a~~~d 85 (116)
T 1vqs_A 12 HMFYEIRTYRLKNGAIPAYLKVVEDEGIEIQKS-H-LGELVGYFFSEI--G--PINEIVHIWAFSSLDDRAERRARLMAD 85 (116)
T ss_dssp CCEEEEEEEEESTTCHHHHHHHHHHTHHHHHHH-H-HCCEEEEEEEEE--S--SSSEEEEEEEESCHHHHHHHHHHHHHC
T ss_pred eeEEEEEEEEEcCCCHHHHHHHHHHhhhHHHHH-h-CCceEEEEEccc--C--CCcEEEEEEecCCHHHHHHHHHHHhcC
Confidence 4677788999999977665556655 4544432 2 122222222221 1 123588899999999998766 58
Q ss_pred hhHHHHHHHHhhhhc
Q 033887 81 PAHVEYANLFLANLE 95 (109)
Q Consensus 81 p~H~~~~~~~~p~~~ 95 (109)
|+=+++.+...|++.
T Consensus 86 p~W~~~~~~~~~lI~ 100 (116)
T 1vqs_A 86 PRWLSFLPKIRDLIE 100 (116)
T ss_dssp HHHHHHTHHHHTTEE
T ss_pred CchHHHHHHhhhhee
Confidence 888887776666654
No 73
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=61.79 E-value=25 Score=21.56 Aligned_cols=56 Identities=18% Similarity=0.133 Sum_probs=37.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCee--EEEeeeccCccccCCCccEEEEEEECCHHhHHHhhc
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMK--SFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 79 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~--~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~ 79 (109)
|..-.|...++++++.++.+ .+ +|. ++.+-.+. .+++.|| -+++|.+.++.+.-..
T Consensus 45 lfVgnLp~~~te~dL~~~F~-------~~-~i~~~~v~i~~d~--~GrsrGf---aFV~F~~~e~A~~Al~ 102 (126)
T 2hgm_A 45 VRLRGLPFGCTKEEIVQFFS-------GL-EIVPNGITLPVDP--EGKITGE---AFVQFASQELAEKALG 102 (126)
T ss_dssp EEEECCCTTCCHHHHHHHTT-------TS-CEEEEEEECCCCS--SSSSCSE---EEEEESSTTHHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHh-------cC-CceeeEEEEEECC--CCCCceE---EEEEECCHHHHHHHHH
Confidence 55567888889887766543 34 566 66665553 3567776 4568999887776544
No 74
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1
Probab=58.94 E-value=48 Score=23.90 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=32.2
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeecc
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNV 51 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~ 51 (109)
-.+...+.++++++++.+++.++++.... +...||+.++--+-+
T Consensus 237 ~g~l~~l~~~l~k~~t~eei~~~lk~a~~--~~l~gil~y~~~~~v 280 (332)
T 1hdg_O 237 DGSITDLTVLVEKETTVEEVNAVMKEATE--GRLKGIIGYNDEPIV 280 (332)
T ss_dssp SCEEEEEEEEESSCCCHHHHHHHHHHHHT--TTTTTTEEEECSCCC
T ss_pred CcEEEEEEEEECCCCCHHHHHHHHHHHhh--cccCCcccccCCCee
Confidence 34566778899999999999888766654 456788888754433
No 75
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=55.64 E-value=16 Score=21.76 Aligned_cols=61 Identities=10% Similarity=0.097 Sum_probs=39.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhc
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 79 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~ 79 (109)
-|..-.|...++++++.++.. .+ +.+++|.++.+-++.. ++..|| -+++|.+.++.+.-..
T Consensus 19 ~l~V~nLp~~~te~~l~~~F~---~~-G~~~~v~~v~i~~~~~--g~~~G~---afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 19 VVKLRGLPWSCSIEDVQNFLS---DC-TIHDGVAGVHFIYTRE--GRQSGE---AFVELESEDDVKLALK 79 (118)
T ss_dssp EEEEESCCTTCCHHHHHHHTT---TS-CBTTGGGGEEEEECSS--SCEEEE---EEEEBSSHHHHHHHGG
T ss_pred EEEEeCCCCCCCHHHHHHHHH---Hc-CCccCceeEEEEECCC--CCCCeE---EEEEECCHHHHHHHHh
Confidence 345557888889888766644 33 2345577777766643 345555 5568999988776544
No 76
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.48 E-value=24 Score=19.47 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=36.2
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
-+..-.|...++++++.++.. .. +|.++.+-++. .++..|| -.++|.+.++.+.-.
T Consensus 12 ~l~v~nLp~~~t~~~l~~~F~-------~~-~i~~v~i~~~~--~g~~~g~---afV~f~~~~~a~~A~ 67 (91)
T 2dgw_A 12 TVKLRGAPFNVTEKNVMEFLA-------PL-KPVAIRIVRNA--HGNKTGY---IFVDFSNEEEVKQAL 67 (91)
T ss_dssp EEEEECCCSSCCHHHHHHHHT-------TS-CCSEEEEEECT--TSCEEEE---EEEECSSHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHh-------hC-CceEEEEEECC--CCCCceE---EEEEECCHHHHHHHH
Confidence 345557888888887755543 34 57777777762 2344444 567899998776543
No 77
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Probab=55.44 E-value=56 Score=23.60 Aligned_cols=42 Identities=10% Similarity=0.174 Sum_probs=30.1
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeee
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGK 49 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~ 49 (109)
......+.++++++++.+++.+.++.... +...||+.++--+
T Consensus 241 ~g~~~dl~v~l~k~~t~eeI~~~lk~a~~--~~l~gil~y~~~~ 282 (339)
T 3b1j_A 241 NVSVVDLVVQVEKPTITEQVNEVLQKASQ--TTMKGIIKYSDLP 282 (339)
T ss_dssp SCEEEEEEEEESSCCCHHHHHHHHHHHHH--STTBTTEEEECSC
T ss_pred CEEEEEEEEEEcCcCCHHHHHHHHHHhhc--CCCCCccCccCCc
Confidence 34566778899999999998887765543 4566787776533
No 78
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=54.84 E-value=19 Score=18.66 Aligned_cols=27 Identities=11% Similarity=0.305 Sum_probs=17.7
Q ss_pred EeCCCCCHHHHHHHHHHHHhhhhcCCC
Q 033887 15 KFKEGTAQDQIDQLIKDYANLVNLIEP 41 (109)
Q Consensus 15 ~~k~~~~~~~~~~~~~~l~~L~~~ip~ 41 (109)
++..+.++++.+++.+.+..+-.+..|
T Consensus 7 ~~~~g~s~eqk~~l~~~lt~~l~~~lg 33 (64)
T 3abf_A 7 TLLEGRPPEKKRELVRRLTEMASRLLG 33 (64)
T ss_dssp EEETTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 344678899888888777555444433
No 79
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Probab=54.01 E-value=58 Score=23.39 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=32.1
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeecc
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNV 51 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~ 51 (109)
..+...+.++++++++.+++.++++.... +...||+.++--+-+
T Consensus 236 ~g~~~~l~~~l~k~~t~eei~~~~k~a~~--~~l~gil~y~~~~~v 279 (330)
T 1gad_O 236 NVSVVDLTVRLEKAATYEQIKAAVKAAAE--GEMKGVLGYTEDDVV 279 (330)
T ss_dssp SCEEEEEEEEESSCCCHHHHHHHHHHHHH--TTTTTTEEEECSCCC
T ss_pred cEEEEEEEEEECCCCCHHHHHHHHHHHhc--CCCCCEEeeECCcee
Confidence 34566778899999999999888766554 457788888754433
No 80
>1vqy_A Hypothetical protein AGR_PAT_315; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.40A {Agrobacterium tumefaciens str} SCOP: d.58.4.13
Probab=53.02 E-value=35 Score=20.50 Aligned_cols=84 Identities=11% Similarity=0.010 Sum_probs=52.9
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHH-HHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh----cC
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQLIK-DYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV----AH 80 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~~~-~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~----~h 80 (109)
-||.=+..++++|+.-++-.+.+.+ .+..... . |..-+-+..+.. | ..-.+..+..|+|.++.+++. .+
T Consensus 12 ~~~yElRtY~i~Pg~~~~f~~~~~~~~i~~~~k-~-g~~~vG~~~~~~--G--~ln~v~~Lw~y~sl~~r~~~r~a~~~d 85 (116)
T 1vqy_A 12 HMIVEERIYRIRGGKMQEYLKLVREEGIAIQAP-I-LGNLIGYFVTDI--G--PLSQVIHMWGYASLDDRAERRGKLAED 85 (116)
T ss_dssp CCEEEEEEEEECTTCHHHHHHHHHHTHHHHHHH-H-HCCEEEEEEEEE--S--BSSEEEEEEEESCHHHHHHHHHHHHTC
T ss_pred eeEEEEEEEEEcCCCHHHHHHHHHHhhhHHHHH-h-CCceEEEEEccc--C--CCcEEEEEEecCCHHHHHHHHHHHhcC
Confidence 4777788999999976665555555 4543332 2 122222222221 1 113578899999999998765 58
Q ss_pred hhHHHHHHHHhhhhc
Q 033887 81 PAHVEYANLFLANLE 95 (109)
Q Consensus 81 p~H~~~~~~~~p~~~ 95 (109)
|+=+++.....|++.
T Consensus 86 p~W~~~~~~~~~lI~ 100 (116)
T 1vqy_A 86 QRWQAFIPRLSVLIE 100 (116)
T ss_dssp HHHHHHHHHHHTTEE
T ss_pred CchHHHHHHhhccee
Confidence 988887776667654
No 81
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Probab=52.74 E-value=62 Score=23.31 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=31.7
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeecc
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNV 51 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~ 51 (109)
-.+...+.++++.+++.+++.++++.... +...||+.++--+-+
T Consensus 237 ~gs~~~l~~~l~k~~t~eei~~~lk~a~~--~~l~gil~y~~~~~v 280 (334)
T 3cmc_O 237 NVSVVDLVAELEKEVTVEEVNAALKAAAE--GELKGILAYSEEPLV 280 (334)
T ss_dssp SCEEEEEEEEESSCCCHHHHHHHHHHHHH--TTTTTTEEEECSCCC
T ss_pred CEEEEEEEEEECCCCCHHHHHHHHHHHhh--CccCCcccCCCCCEe
Confidence 34556678889999999999888766554 456788888754433
No 82
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.36 E-value=34 Score=20.20 Aligned_cols=55 Identities=11% Similarity=0.081 Sum_probs=36.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
|.+-.|...++++++.++.+ .+ +|.++.+-.+- .+++.|| -.++|.+.++.+.-.
T Consensus 19 v~V~nLp~~~te~dl~~~F~-------~~-~v~~v~i~~d~--~g~~~G~---afV~F~~~~~a~~Al 73 (109)
T 2dnn_A 19 VSVHGMPFSAMENDVRDFFH-------GL-RVDAVHLLKDH--VGRNNGN---GLVKFLSPQDTFEAL 73 (109)
T ss_dssp EEEECCCSSCCHHHHHHHTT-------TS-CCCEEEECCCT--TCCCCSE---EEEECSSHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHhc-------cC-CeeEEEEEECC--CCCCCeE---EEEEECCHHHHHHHH
Confidence 44456788888888776654 23 46777776653 3566776 456899988766543
No 83
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=51.73 E-value=15 Score=19.97 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=16.4
Q ss_pred EEeCCCCCHHHHHHHHHHHHhhhh
Q 033887 14 AKFKEGTAQDQIDQLIKDYANLVN 37 (109)
Q Consensus 14 f~~k~~~~~~~~~~~~~~l~~L~~ 37 (109)
+++.++.++++.+++.+.+..+..
T Consensus 6 I~~~~grs~eqK~~L~~~it~~l~ 29 (72)
T 3mb2_A 6 ITMLEGRSTEQKAELARALSAAAA 29 (72)
T ss_dssp EEEESCCCHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHH
Confidence 344467899999888776655433
No 84
>2asy_A Protein YDHR precursor; dimeric APHA+beta barrel, homodimer, structural genomics, ontario centre for structural proteomics, OCSP; NMR {Escherichia coli} SCOP: d.58.4.12
Probab=51.72 E-value=41 Score=20.98 Aligned_cols=69 Identities=10% Similarity=-0.041 Sum_probs=47.3
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcCh
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHP 81 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp 81 (109)
++..-+|-|++..+..+|-.+.+.+...... .-||+..=-|..|... =+.+=+=-|+|+++.++|.+-+
T Consensus 23 m~~lLqVdF~~~gP~geE~~~~f~~lA~si~-~epGLIwKiwtene~~------~eAGGIYLFe~~aaAEaYl~~h 91 (123)
T 2asy_A 23 MATLLQLHFAFNGPFGDAMAEQLKPLAESIN-QEPGFLWKVWTESEKN------HEAGGIYLFTDEKSALAYLEKH 91 (123)
T ss_dssp CCEEEEEEEESSSSCSHHHHTTHHHHHHHHT-CCCCBSCCCCBCBTTT------TEEEEEEEESCHHHHHHHHHHH
T ss_pred eeEeEEEeecCCCchHHHHHHHHHHHHHHHh-cCCCcEEEEEEEcCCC------CccceEEEeCCHHHHHHHHHHH
Confidence 3456678899998886665566666556665 4799765445555432 2344456799999999999864
No 85
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=51.05 E-value=15 Score=19.32 Aligned_cols=24 Identities=4% Similarity=0.074 Sum_probs=17.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhhh
Q 033887 12 LLAKFKEGTAQDQIDQLIKDYANLV 36 (109)
Q Consensus 12 Vlf~~k~~~~~~~~~~~~~~l~~L~ 36 (109)
|-+++ ++.++++.+++.+.+..+.
T Consensus 3 I~I~~-~grt~eqK~~L~~~it~~~ 26 (62)
T 3m20_A 3 LIVYG-PKLDVGKKREFVERLTSVA 26 (62)
T ss_dssp EEEEC-SCCCHHHHHHHHHHHHHHH
T ss_pred EEEEE-CCCCHHHHHHHHHHHHHHH
Confidence 44566 7889999988887765543
No 86
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*
Probab=50.85 E-value=70 Score=23.33 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=31.3
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeecc
Q 033887 7 VVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNV 51 (109)
Q Consensus 7 mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~ 51 (109)
.+...+.++++.+++.+++.++++.... +...||+.++--+-+
T Consensus 258 gs~~dl~~~l~k~~t~eeI~~~~k~a~~--~~lkgil~y~~~~~v 300 (354)
T 3cps_A 258 VSVVDLTCKLAKPASIEEIYQAVKEASN--GPMKGIMGYTSDDVV 300 (354)
T ss_dssp CEEEEEEEEESSCCCHHHHHHHHHHHHH--TTTTTTEEEECSCCC
T ss_pred EEEEEEEEEECCCCCHHHHHHHHHHHhh--CCCCCccCccCCCee
Confidence 4556677889999999999888766554 456788888754433
No 87
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=50.69 E-value=41 Score=20.59 Aligned_cols=56 Identities=13% Similarity=0.198 Sum_probs=37.9
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhc
Q 033887 8 VKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 79 (109)
Q Consensus 8 i~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~ 79 (109)
+.-.|.++++++. .+++.+ .+. .+|+|..+.. ..+.||+.+.+.+.|.++++.+..
T Consensus 65 ~~a~v~v~~~~~~----~~~~~~---~l~-~~p~V~~~~~--------~tG~~d~~~~v~~~~~~~l~~~~~ 120 (144)
T 2cfx_A 65 VSCIVEATVKNAD----YERFKS---YIQ-TLPNIEFCYR--------IAGAACYMLKINAESLEAVEDFIN 120 (144)
T ss_dssp EEEEEEEEEGGGC----HHHHHH---HHH-TCTTEEEEEE--------EESSSSEEEEEEESSHHHHHHHHH
T ss_pred EEEEEEEEECccc----HHHHHH---HHh-cChhhheeee--------eeCCCCEEEEEEECCHHHHHHHHH
Confidence 4455666776543 344443 333 4788877632 135799999999999999998763
No 88
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=49.82 E-value=36 Score=19.78 Aligned_cols=46 Identities=11% Similarity=0.163 Sum_probs=31.7
Q ss_pred HHHHHHHHhhh-hcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 26 DQLIKDYANLV-NLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 26 ~~~~~~l~~L~-~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
+.+.+.++... .+...|.++.+-++.. +++.|| ..+.|.+.++-+.
T Consensus 37 ~~~~edl~~~f~~~~G~V~~v~i~~~~~--~~~~G~---~fV~f~~~~~A~~ 83 (104)
T 1jmt_A 37 DEFFEEVFTEMEEKYGEVEEMNVCDNLG--DHLVGN---VYVKFRREEDAEK 83 (104)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECCSSS--SSSEEE---EEEEESCHHHHHH
T ss_pred HHHHHHHHHHhhccCCceEEEEEEeCCC--CCccEE---EEEEECCHHHHHH
Confidence 34556777777 7888899999877653 245565 4567988876543
No 89
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A
Probab=49.77 E-value=76 Score=23.44 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=43.3
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccC---------------CCccEEEEEEECC
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLH---------------QGFTHIFESTFES 70 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~---------------~~~~~~~~~~F~s 70 (109)
......+.++++.+++.+++.++++.... +...||+.++--+-+|.+-.+ ++--+-+++.+++
T Consensus 241 ~gs~~dlt~~l~k~~t~eeI~~~lk~a~~--~~lkgil~y~~~~~vS~d~~~~~~ssi~d~~~~~~~~~~~vk~~~wyDN 318 (380)
T 2d2i_A 241 NVSVVDLVVQVEKPTITEQVNEVLQKASQ--TTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYDN 318 (380)
T ss_dssp SCEEEEEEEEESSCCCHHHHHHHHHHHHH--TTTTTTEEEECSCCCGGGGTTCCCSEEEEGGGCEEETTTEEEEEEEECT
T ss_pred CEEEEEEEEEECCcCCHHHHHHHHHHHhh--CCCCCccCCcCCCeeeeeeCCCCcceEEecccCceecCCEEEEEEEECC
Confidence 34556778899999999999888766553 456788888755443321111 1223456777888
Q ss_pred HHhHH
Q 033887 71 TEGVA 75 (109)
Q Consensus 71 ~e~l~ 75 (109)
+=.+.
T Consensus 319 e~gys 323 (380)
T 2d2i_A 319 EWGYS 323 (380)
T ss_dssp THHHH
T ss_pred CcchH
Confidence 75543
No 90
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*
Probab=49.54 E-value=71 Score=23.08 Aligned_cols=44 Identities=18% Similarity=0.158 Sum_probs=31.5
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccC
Q 033887 7 VVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVS 52 (109)
Q Consensus 7 mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~ 52 (109)
.....+.++++.+++.+++.++++.... +.+.||+.++-.+-+|
T Consensus 240 gs~~dl~~~l~k~~t~eei~~~lk~a~~--~~lkgil~y~~~~~vs 283 (337)
T 1rm4_O 240 VSVVDLVVQVSKKTFAEEVNAAFRESAD--NELKGILSVCDEPLVS 283 (337)
T ss_dssp CEEEEEEEEESSCCCHHHHHHHHHHHHT--TTTTTTEEEECSCCCG
T ss_pred EEEEEEEEEECCCCCHHHHHHHHHHHhh--CCcCceecCcCCCeee
Confidence 4556677889999999998888766543 4567888887555443
No 91
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=49.48 E-value=25 Score=19.89 Aligned_cols=24 Identities=8% Similarity=-0.020 Sum_probs=19.6
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhhh
Q 033887 13 LAKFKEGTAQDQIDQLIKDYANLV 36 (109)
Q Consensus 13 lf~~k~~~~~~~~~~~~~~l~~L~ 36 (109)
+|=++|+.+++++++.++.+..+-
T Consensus 49 m~Il~P~l~ee~~~~~vek~~~~i 72 (77)
T 3zzp_A 49 NIVLNPNLDQSQLQNEKEIIQRAL 72 (77)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH
Confidence 567889999999999888777664
No 92
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=49.38 E-value=33 Score=19.20 Aligned_cols=56 Identities=14% Similarity=0.257 Sum_probs=34.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 12 LLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 12 Vlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
.+-.|.++++++++.++.+..- +.|.++.+-++-.. +.+.|| -.++|.|.++-+.-
T Consensus 5 ~v~nLp~~~te~~l~~~F~~~G------~~v~~v~i~~d~~t-~~~rg~---aFV~F~~~~~A~~A 60 (91)
T 2lxi_A 5 MLRMLPQAATEDDIRGQLQSHG------VQAREVRLMRNKSS-GQSRGF---AFVEFSHLQDATRW 60 (91)
T ss_dssp EEETCCSSCCHHHHHHHHHHHT------CCCSBCCSSSCSSS-CCCSSE---EEEECSSHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHhC------CEeEEEEEEecCCC-CCcCce---EEEEecCHHHHHHH
Confidence 3446888899988877765431 13555555555432 345565 45789998776553
No 93
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Probab=49.05 E-value=72 Score=22.96 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=31.7
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeecc
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNV 51 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~ 51 (109)
..+...+.++++.+++.+++.++++.... +...||+.++--+-+
T Consensus 241 ~g~~~~l~~~l~k~~t~eei~~~~~~a~~--~~l~gil~y~~~~~v 284 (337)
T 3e5r_O 241 DVSVVDLTVRIEKAASYDAIKSAIKSASE--GKLKGIIGYVEEDLV 284 (337)
T ss_dssp SCEEEEEEEEESSCCCHHHHHHHHHHHHH--TTTTTTEEEECSCCC
T ss_pred CeEEEEEEEEECCCccHHHHHHHHHHHhh--CCCCCcccCCCCCee
Confidence 34556678899999999999888766553 456788888754433
No 94
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=46.98 E-value=29 Score=20.81 Aligned_cols=51 Identities=14% Similarity=-0.013 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHH
Q 033887 17 KEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVA 75 (109)
Q Consensus 17 k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~ 75 (109)
.+..+++..+++.+.++...++...|.++.+-++. ..|+ ..+.|.+.++-+
T Consensus 19 ~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-----~~G~---~fV~f~~~e~A~ 69 (114)
T 3s6e_A 19 QTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-----AQGN---VYVKCPSIAAAI 69 (114)
T ss_dssp TTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-----TTCC---EEEECSSHHHHH
T ss_pred HHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-----CcEE---EEEEECCHHHHH
Confidence 33345556788888898888888889998774442 2455 567898876543
No 95
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=46.87 E-value=39 Score=19.30 Aligned_cols=55 Identities=11% Similarity=0.192 Sum_probs=35.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
+..-.|..+++++++.++.+ .+..|.++.+-++-.. +.+.|| -.++|.+.++-+.
T Consensus 22 lfV~nLp~~~te~~L~~~F~-------~~G~I~~v~i~~d~~t-g~~kG~---afV~f~~~~~A~~ 76 (99)
T 4fxv_A 22 LIVNYLPQNMTQDELRSLFS-------SIGEVESAKLIRDKVA-GHSLGY---GFVNYVTAKDAER 76 (99)
T ss_dssp EEEESCCTTCCHHHHHHHHH-------TTSCEEEEEEEECSSS-CCEEEE---EEEEESSHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHH-------hcCCEEEeEeeecCCC-Cccccc---EEEEECCHHHHHH
Confidence 34446888899887766543 4566888888776532 234444 3578998876544
No 96
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=46.45 E-value=55 Score=20.86 Aligned_cols=56 Identities=5% Similarity=0.029 Sum_probs=36.8
Q ss_pred EEEEEEeCCCC----CHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 10 HVLLAKFKEGT----AQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 10 HiVlf~~k~~~----~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
-+|.+++++.. +.+..+++.+ .|. .+|+|..+. . ++.||+.+.+...|.++++.+.
T Consensus 78 a~v~v~~~~~~~~~f~~~~~~~~~~---~l~-~~peV~~~~----v-----tG~~dll~~v~~~d~~~l~~~l 137 (171)
T 2ia0_A 78 ALIVLEVGKPVIEDFLERYISYISS---TLS-ALPGVLFVA----K-----SGEDKIIALVGKNNKDELVKFI 137 (171)
T ss_dssp EEEEEEESCC--CHHHHHHHHHHHH---HHH-TSTTEEEEE----E-----ETTTEEEEEEEESSTTHHHHHH
T ss_pred EEEEEEECCccccccchhHHHHHHH---HHH-CCCCeEEEE----E-----cCCCCEEEEEEECCHHHHHHHH
Confidence 34556666541 2224455544 343 478898874 2 2579999999999999998865
No 97
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=46.39 E-value=26 Score=20.25 Aligned_cols=61 Identities=8% Similarity=0.055 Sum_probs=39.1
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhc
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 79 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~ 79 (109)
-+..-.|...++++++.++.. .+ +.+++|.++.+-++.. ++..|| -.++|.+.++.+.-..
T Consensus 13 ~l~V~nLp~~~te~~l~~~F~---~~-g~~~~v~~v~i~~~~~--g~~~G~---afV~F~~~~~a~~Al~ 73 (107)
T 2lmi_A 13 LIRAQGLPWSCTMEDVLNFFS---DC-RIRNGENGIHFLLNRD--GKRRGD---ALIEMESEQDVQKALE 73 (107)
T ss_dssp EEEEECCCSSCCSHHHHHHTT---TS-CBTTTTTTEECCCCTT--STTCSE---EEEEBSSHHHHHHHHT
T ss_pred EEEEeCCCCCCCHHHHHHHHH---hc-CCcCCcceEEEEECCC--CCEeeE---EEEEECCHHHHHHHHH
Confidence 344557888888887766644 33 1244467777665543 456676 4568999998776544
No 98
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=46.06 E-value=47 Score=19.97 Aligned_cols=55 Identities=11% Similarity=0.044 Sum_probs=37.6
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 8 VKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 8 i~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
+.-.+.+++++ +..+.+.+ .|. .+|+|..+.. ..+.||+.+.+...|.++++.+.
T Consensus 64 ~~~~v~~~~~~----~~~~~~~~---~l~-~~~~v~~~~~--------~~G~~d~~~~v~~~d~~~l~~~~ 118 (141)
T 1i1g_A 64 LVTITGVDTKP----EKLFEVAE---KLK-EYDFVKELYL--------SSGDHMIMAVIWAKDGEDLAEII 118 (141)
T ss_dssp EEEEEEEEECG----GGHHHHHH---HHH-HSTTEEEECC--------CSSSSSEEEEEEESSHHHHHHHH
T ss_pred EEEEEEEEECc----hhHHHHHH---HHh-cCCCeEEEEE--------ecCCCCEEEEEEECCHHHHHHHH
Confidence 45566677754 23455544 443 3688877621 24679999999999999998876
No 99
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=45.10 E-value=32 Score=21.25 Aligned_cols=42 Identities=5% Similarity=0.002 Sum_probs=32.8
Q ss_pred EEEEEEEeCC--CCCHHHHHHHHHHHHhhhhcCCCeeEEEeeec
Q 033887 9 KHVLLAKFKE--GTAQDQIDQLIKDYANLVNLIEPMKSFQWGKN 50 (109)
Q Consensus 9 ~HiVlf~~k~--~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~ 50 (109)
.+|+.+.+++ ..++++.+++.+.+..|.+.-|..+-+.....
T Consensus 19 dGIl~~~~~~~~~i~~e~A~~~~~~~~~l~~~~~~~vL~D~r~~ 62 (124)
T 3bl4_A 19 DGILRLTWPRGAAITAADAERAMLRVNQLCGDDRHPMLVDMATT 62 (124)
T ss_dssp TSCEEEECSSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCEEEEEEcCCCccCHHHHHHHHHHHHHHhCCCceEEEEEcccc
Confidence 4688999999 46999999999999999887666555555444
No 100
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*
Probab=44.95 E-value=85 Score=22.62 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=30.1
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeee
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGK 49 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~ 49 (109)
......+.++++++++.+++.++++.... +...||+.++--+
T Consensus 241 ~g~~~~l~v~l~k~~t~eei~~~lk~a~~--~~l~gil~y~~~~ 282 (339)
T 2x5j_O 241 NVTAIDLSVTVKKPVKANEVNLLLQKAAQ--GAFHGIVDYTELP 282 (339)
T ss_dssp SCEEEEEEEEESSCCCHHHHHHHHHHHHH--TTTTTTEEEECSC
T ss_pred CcEEEEEEEEECCCCCHHHHHHHHHHHhh--cCCCcEEcccCCc
Confidence 34566778899999999998888765553 4567787776533
No 101
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=44.81 E-value=36 Score=18.37 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=35.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
+..-.+..+++++++.++.. ....|.++.+-++....+...|| -.++|.+.++.+.
T Consensus 7 l~V~nlp~~~t~~~l~~~F~-------~~G~i~~~~i~~~~~~~~~~~g~---afV~f~~~~~a~~ 62 (88)
T 4a8x_A 7 VHIGRLTRNVTKDHIMEIFS-------TYGKIKMIDMPVERMHPHLSKGY---AYVEFENPDEAEK 62 (88)
T ss_dssp EEEECCCTTCCHHHHHHHHH-------TTSCEEEEECCEETTEEEEECSE---EEEEESSHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHH-------hCCCEEEEEEEeCCCCCCCCCcE---EEEEEecHHHHHH
Confidence 44557888888887765543 35668888776665422224454 4567988877654
No 102
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=44.15 E-value=24 Score=17.93 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=15.0
Q ss_pred EeCCCCCHHHHHHHHHHHHhh
Q 033887 15 KFKEGTAQDQIDQLIKDYANL 35 (109)
Q Consensus 15 ~~k~~~~~~~~~~~~~~l~~L 35 (109)
++..+.++++.+++.+.+...
T Consensus 9 ~~~~g~s~e~k~~l~~~l~~~ 29 (63)
T 2x4k_A 9 KLLEGRSDEQLKNLVSEVTDA 29 (63)
T ss_dssp EEESCCCHHHHHHHHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHHHH
Confidence 555678899888887666544
No 103
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=43.84 E-value=43 Score=18.91 Aligned_cols=59 Identities=15% Similarity=0.294 Sum_probs=38.5
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 8 VKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 8 i~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
-+-+..-.|...++++++.++. ..+ ||.++.+-++... +...|| -.++|.+.++.+.-.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F-------~~~-gi~~v~i~~~~~~-g~~~g~---afV~f~~~~~a~~A~ 73 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIF-------KDL-SIRSVRLVRDKDT-DKFKGF---CYVEFDEVDSLKEAL 73 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHT-------TTS-CEEEEEEEECSSS-CSEEEE---EEEEESSHHHHHHHG
T ss_pred CeEEEEeCCCCCCCHHHHHHHH-------HhC-CceEEEEeecCCC-CccceE---EEEEECCHHHHHHHH
Confidence 3455566788888888765553 245 5888888776532 233444 457899998876654
No 104
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=42.23 E-value=51 Score=19.31 Aligned_cols=55 Identities=15% Similarity=0.251 Sum_probs=36.5
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
-|..-.|..+++++++.++.+ ....|.++.+-++.+ +...|| -.++|.|.++.+.
T Consensus 9 ~l~V~nLp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~--g~~~g~---afV~F~~~~~A~~ 63 (116)
T 2fy1_A 9 KLFIGGLNRETNEKMLKAVFG-------KHGPISEVLLIKDRT--SKSRGF---AFITFENPADAKN 63 (116)
T ss_dssp EEEEECCTTTCCHHHHHHHHH-------TSSCCSEEEEECSTT--TTCCCE---EEEECSSHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHH-------hcCCEEEEEEEECCC--CCcccE---EEEEECCHHHHHH
Confidence 344567888899888766643 345577777776652 345555 4578999887655
No 105
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=42.18 E-value=27 Score=17.80 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=16.1
Q ss_pred EEeCCCCCHHHHHHHHHHHHhhh
Q 033887 14 AKFKEGTAQDQIDQLIKDYANLV 36 (109)
Q Consensus 14 f~~k~~~~~~~~~~~~~~l~~L~ 36 (109)
+++-++.++++.+++.+.+..+.
T Consensus 5 i~~~~grs~eqk~~l~~~i~~~l 27 (61)
T 2opa_A 5 VKMLEGRTDEQKRNLVEKVTEAV 27 (61)
T ss_dssp EEEESCCCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHHHHHH
Confidence 35556789999988877665443
No 106
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*
Probab=42.16 E-value=94 Score=22.36 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=31.3
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccC
Q 033887 7 VVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVS 52 (109)
Q Consensus 7 mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~ 52 (109)
.....+.++++.+++.+++.++++.... +...||+.++--+-.|
T Consensus 236 gs~~dl~v~l~k~~t~eei~~~lk~a~~--~~l~gil~y~~~~~vs 279 (331)
T 2g82_O 236 GSISDITALLKREVTAEEVNAALKAAAE--GPLKGILAYTEDEIVL 279 (331)
T ss_dssp CEEEEEEEEESSCCCHHHHHHHHHHHHH--TTTTTTEEEECSCCCG
T ss_pred EEEEEEEEEECCCCCHHHHHHHHHHhhc--CccCCccCCCCCCeee
Confidence 4456678899999999998888765543 3567888887554443
No 107
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1
Probab=41.96 E-value=93 Score=22.25 Aligned_cols=42 Identities=12% Similarity=0.208 Sum_probs=30.5
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeee
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGK 49 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~ 49 (109)
..+...+.++++++++.+++.++++.... +...||+.++--+
T Consensus 239 ~g~~~~l~~~l~~~~t~eei~~~~~~a~~--~~~~~il~~~~~~ 280 (335)
T 1u8f_O 239 NVSVVDLTCRLEKPAKYDDIKKVVKQASE--GPLKGILGYTEHQ 280 (335)
T ss_dssp SCEEEEEEEEESSCCCHHHHHHHHHHHHH--TTTTTTEEEECSC
T ss_pred CEEEEEEEEEECCCCCHHHHHHHHHHHhh--CccCcEEcccCCC
Confidence 34556677889999999999888766553 4567888887444
No 108
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=41.63 E-value=43 Score=18.28 Aligned_cols=59 Identities=7% Similarity=0.140 Sum_probs=36.3
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
+.+..-.+..+++++++.++.+.. ..|.++.+-++... +.+.|| -.++|.+.++.++..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~-------G~i~~v~i~~~~~~-~~~~g~---afV~f~~~~a~~a~~ 60 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF-------GKVFNVKLIYDRET-KKPKGF---GFVEMQEESVSEAIA 60 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH-------TCCSEEEECCCSSS-CCCCEE---EEEEECTTHHHHHHH
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc-------CCEEEEEEEEcCCC-CCcceE---EEEEECCHHHHHHHH
Confidence 456667888999988876665433 34667766655432 234444 456788888555443
No 109
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Probab=40.76 E-value=1e+02 Score=22.43 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=30.1
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccC
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVS 52 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~ 52 (109)
..-+.+.++.+++.+++.++++.... +.+.||+.++--+-+|
T Consensus 253 ~~dltv~lek~~t~eei~~~lk~a~~--~~lkgil~y~~~~~VS 294 (345)
T 2b4r_O 253 VVDLVCRLQKPAKYEEVALEIKKAAE--GPLKGILGYTEDEVVS 294 (345)
T ss_dssp EEEEEEEESSCCCHHHHHHHHHHHHH--TTTTTTEEEECSCCCG
T ss_pred EEEEEEEECCCCCHHHHHHHHHHhhh--cccCCcccccCCCceE
Confidence 34567889999999998888766553 4577888887544333
No 110
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=40.54 E-value=59 Score=19.54 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=35.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
|..-.|..+++++++.++.+ ....|.++.+-++... +...|| -+++|.+.++.+.
T Consensus 49 l~V~nLp~~~te~~L~~~F~-------~~G~I~~v~i~~d~~t-g~~~G~---afV~F~~~~~A~~ 103 (129)
T 2kxn_B 49 LGVFGLSLYTTERDLREVFS-------KYGPIADVSIVYDQQS-RRSRGF---AFVYFENVDDAKE 103 (129)
T ss_dssp BCEETCTTSCCHHHHHHHHT-------TTSCEEEEEEECCSSS-SCCCCE---EEEEESCHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHH-------hcCCeEEEEEEecCCC-CccceE---EEEEECCHHHHHH
Confidence 44557888888887655543 4556888887766432 234554 4578999887664
No 111
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=39.44 E-value=32 Score=17.54 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=15.0
Q ss_pred EeCCCCCHHHHHHHHHHHHhh
Q 033887 15 KFKEGTAQDQIDQLIKDYANL 35 (109)
Q Consensus 15 ~~k~~~~~~~~~~~~~~l~~L 35 (109)
++-++.++++.+++.+.+..+
T Consensus 6 ~~~~grs~e~k~~l~~~i~~~ 26 (62)
T 1otf_A 6 YIIEGRTDEQKETLIRQVSEA 26 (62)
T ss_dssp EEESCCCHHHHHHHHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHHHH
Confidence 555678999988887666444
No 112
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=39.12 E-value=43 Score=17.52 Aligned_cols=25 Identities=12% Similarity=0.221 Sum_probs=17.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhhh
Q 033887 12 LLAKFKEGTAQDQIDQLIKDYANLV 36 (109)
Q Consensus 12 Vlf~~k~~~~~~~~~~~~~~l~~L~ 36 (109)
|-+++-++.++++.+++.+.+....
T Consensus 3 i~I~~~~Grs~eqk~~L~~~it~~~ 27 (65)
T 3ry0_A 3 IRVTLLEGRSPQEVAALGEALTAAA 27 (65)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 3445557889999988887665443
No 113
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=38.80 E-value=19 Score=18.00 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=14.4
Q ss_pred CCCCCHHHHHHHHHHHHhhhh
Q 033887 17 KEGTAQDQIDQLIKDYANLVN 37 (109)
Q Consensus 17 k~~~~~~~~~~~~~~l~~L~~ 37 (109)
|++.++++..++...+.+|..
T Consensus 14 kegfspeelaaleselqalek 34 (48)
T 1g6u_A 14 KEGFSPEELAALESELQALEK 34 (48)
T ss_dssp HTTCSHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHH
Confidence 567788888777666665543
No 114
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=38.79 E-value=58 Score=18.99 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=37.8
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
+-+..-.|...++++++.++. .....|.++.+-++... +++.|| -.++|++.++-+.
T Consensus 7 ~~lfV~nL~~~~te~~L~~~F-------~~~G~i~~v~i~~d~~t-g~~rG~---aFV~f~~~~~A~~ 63 (110)
T 3s8s_A 7 KEVTFARLNDNVRETFLKDMC-------RKYGEVEEVEILLHPRT-RKHLGL---ARVLFTSTRGAKE 63 (110)
T ss_dssp CEEEEESCCTTCCHHHHHHHH-------TTTSCEEEEEEEECTTT-CCEEEE---EEEEESSHHHHHH
T ss_pred cEEEEECCCCCCCHHHHHHHH-------HhcCCeeEEEEEECCCC-CceeeE---EEEEECCHHHHHH
Confidence 445666888888987776553 34667888888776532 345555 3468888876554
No 115
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.26 E-value=58 Score=18.79 Aligned_cols=57 Identities=18% Similarity=0.301 Sum_probs=39.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhc
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 79 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~ 79 (109)
+..-.|..+++++++.++.. ....|.++.+-++.. +.+.|| -.++|.+.++.+.-..
T Consensus 14 lfV~~Lp~~~te~~L~~~F~-------~~G~v~~v~i~~d~~--g~~rG~---aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 14 VYIKGFPTDATLDDIKEWLE-------DKGQVLNIQMRRTLH--KAFKGS---IFVVFDSIESAKKFVE 70 (103)
T ss_dssp EEEECCCTTCCHHHHHHHHH-------TSSCEEEEEEECCCT--TSCCCE---EEEEESSHHHHHHHHT
T ss_pred EEEECCCCCCCHHHHHHHHh-------hcCCEEEEEEEECCC--CCCccE---EEEEECCHHHHHHHHH
Confidence 34457788888887766543 355688888876653 456776 3478999988776554
No 116
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=36.78 E-value=54 Score=18.01 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=35.3
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
-+..-.|...++++++.++.+ ....|.++.+-++.. +...+| -.++|.+.++.+.-
T Consensus 18 ~l~v~nlp~~~~~~~l~~~F~-------~~G~i~~v~i~~~~~--g~~~g~---afV~f~~~~~a~~A 73 (95)
T 2ywk_A 18 TVFVGNLEARVREEILYELFL-------QAGPLTKVTICKDRE--GKPKSF---GFVCFKHPESVSYA 73 (95)
T ss_dssp EEEEECCCTTCCHHHHHHHHG-------GGSCEEEEEEEECTT--SCEEEE---EEEEESSTHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHH-------hcCCEEEEEEEECCC--CCCceE---EEEEECCHHHHHHH
Confidence 455567888888877655543 345688887776643 233444 45778888776553
No 117
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=36.67 E-value=37 Score=17.95 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=17.7
Q ss_pred EEEEeCC---CCCHHHHHHHHHHHHhhh
Q 033887 12 LLAKFKE---GTAQDQIDQLIKDYANLV 36 (109)
Q Consensus 12 Vlf~~k~---~~~~~~~~~~~~~l~~L~ 36 (109)
|-+++-+ +.++++.+++.+.+..+.
T Consensus 3 i~I~~~~~~~grs~eqK~~l~~~lt~~l 30 (67)
T 3m21_A 3 INIKLVPENGGPTNEQKQQLIEGVSDLM 30 (67)
T ss_dssp EEEEECCBTTBSCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 4456666 789999988877665443
No 118
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=35.35 E-value=65 Score=18.54 Aligned_cols=58 Identities=16% Similarity=0.199 Sum_probs=37.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
-+..-.|...++++++.++. .....|.++.+-++... +.+.|| -.++|.+.++.+.-.
T Consensus 27 ~lfV~nLp~~~te~~L~~~F-------~~~G~i~~v~i~~~~~t-g~~kg~---afV~f~~~~~A~~Ai 84 (109)
T 2rs2_A 27 KMFIGGLSWQTTQEGLREYF-------GQFGEVKECLVMRDPLT-KRSRGF---GFVTFMDQAGVDKVL 84 (109)
T ss_dssp CEEEESCCTTCCHHHHHHHH-------TTTSCEEEEEECCCTTT-CCCTTC---EEEEESSHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHH-------HccCCeEEEEEEECCCC-CCcCcE---EEEEECCHHHHHHHH
Confidence 34455678888887765554 34566888887766432 345666 456799988776644
No 119
>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A
Probab=35.22 E-value=55 Score=18.84 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=13.2
Q ss_pred EEEEEEEEeCCCCCHHHHHHHH
Q 033887 8 VKHVLLAKFKEGTAQDQIDQLI 29 (109)
Q Consensus 8 i~HiVlf~~k~~~~~~~~~~~~ 29 (109)
++||++ +..++.++++.++..
T Consensus 5 ~~hIli-~~~~~~~~~~~~~a~ 25 (103)
T 2pv1_A 5 LSHILI-PLPENPTSDQVNEAE 25 (103)
T ss_dssp EEEEEE-ECCSSCCHHHHHHHH
T ss_pred EEEEEE-ECCCCCCHHHHHHHH
Confidence 577765 677777766654443
No 120
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.97 E-value=61 Score=18.07 Aligned_cols=55 Identities=9% Similarity=0.225 Sum_probs=35.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
+..-.|...++++++.++.+ ....|.++.+-++.+ +...+| -.++|.+.++.+.-
T Consensus 20 l~v~nlp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~--g~~~g~---afV~f~~~~~a~~A 74 (100)
T 2do4_A 20 LFISGLPFSCTKEELEEICK-------AHGTVKDLRLVTNRA--GKPKGL---AYVEYENESQASQA 74 (100)
T ss_dssp EEEESCCTTCCHHHHHHHHT-------TTSCEEEEEEEECTT--SCEEEE---EEEEESSHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHH-------hCCCeEEEEEEECCC--CCEEeE---EEEEECCHHHHHHH
Confidence 44557888888887655543 345688888776652 233443 45789998876543
No 121
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=34.95 E-value=60 Score=17.98 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=35.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccc--cCCCccEEEEEEECCHHhHHHh
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIEN--LHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~--~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
+..-.|...++++++.++.+ ....|.++.+-++....+ ...+| -+++|.+.++.+.-
T Consensus 8 l~V~nLp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~~~gt~~~~g~---afV~f~~~~~a~~A 66 (98)
T 2cpf_A 8 LFIKNLNFSTTEETLKGVFS-------KVGAIKSCTISKKKNKAGVLLSMGF---GFVEYKKPEQAQKA 66 (98)
T ss_dssp EEEESCCTTCCHHHHHHHHH-------TTSCEEEEEEEEEECTTCCEEEEEE---EEEEESSHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHH-------hcCCeEEEEEEecCCCCCCcCcccE---EEEEECCHHHHHHH
Confidence 44456788888887766543 345678887776653111 23344 45789988876553
No 122
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=34.93 E-value=39 Score=18.57 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=15.6
Q ss_pred EeCCCCCHHHHHHHHHHHHhhh
Q 033887 15 KFKEGTAQDQIDQLIKDYANLV 36 (109)
Q Consensus 15 ~~k~~~~~~~~~~~~~~l~~L~ 36 (109)
++-++.++++.+++.+.+....
T Consensus 7 ~~~~Grs~eqK~~L~~~it~~l 28 (76)
T 3ej9_A 7 DMRYGRTDEQKRALSAGLLRVI 28 (76)
T ss_dssp EEETTCCHHHHHHHHHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHHHHH
Confidence 4446789999988887664443
No 123
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=34.83 E-value=73 Score=18.95 Aligned_cols=57 Identities=16% Similarity=0.277 Sum_probs=37.0
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
+.|..-.|..+++++++.++...+ ..|.++.+-++-.. +...|| -+++|.+.++.+.
T Consensus 43 ~~l~V~nLp~~~~~~~l~~~F~~~-------G~i~~v~i~~~~~~-~~~~g~---afV~f~~~~~a~~ 99 (139)
T 1u6f_A 43 RNLMVNYIPTTVDEVQLRQLFERY-------GPIESVKIVCDRET-RQSRGY---GFVKFQSGSSAQQ 99 (139)
T ss_dssp SEEEEESCSTTCCHHHHHHHHHHH-------SCEEEEEEEEETTT-TEEEEE---EEEEESSHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc-------CCeEEEEEEEcCCC-CCcceE---EEEEECCHHHHHH
Confidence 456666788899988876665433 44777777666432 233443 4578999887665
No 124
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=34.62 E-value=48 Score=18.03 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=17.5
Q ss_pred EEEEeCCCC-CHHHHHHHHHHHHhhh
Q 033887 12 LLAKFKEGT-AQDQIDQLIKDYANLV 36 (109)
Q Consensus 12 Vlf~~k~~~-~~~~~~~~~~~l~~L~ 36 (109)
|-+++-++. ++++.+++.+.+..+.
T Consensus 3 I~I~l~~Grls~eqk~~L~~~l~~~l 28 (76)
T 1gyx_A 3 IDIKCFPRELDEQQKAALAADITDVI 28 (76)
T ss_dssp EEEEESCCCCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 445666777 9999988877665543
No 125
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=34.52 E-value=52 Score=17.19 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=32.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 13 LAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 13 lf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
.-.+..+++++++.++.+ ....|.++.+-++... +.+.|| -.++|.|.++.+.-.
T Consensus 5 v~nlp~~~t~~~l~~~F~-------~~G~v~~v~i~~~~~~-~~~~g~---afV~f~~~~~a~~a~ 59 (77)
T 1uaw_A 5 IGGLSWQTTQEGLREYFG-------QFGEVKECLVMRDPLT-KRSRGF---GFVTFMDQAGVDKVL 59 (77)
T ss_dssp EESCCSSCCSHHHHHHHT-------TTSCCCCEEEECCCCS-SSCSSE---EEECCCCTTHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHH-------hcCCEEEEEEecCCCC-CCcCce---EEEEEcCHHHHHHHH
Confidence 345677788777655543 3445666666555421 244555 347888887765533
No 126
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=34.19 E-value=70 Score=18.57 Aligned_cols=45 Identities=9% Similarity=-0.128 Sum_probs=28.7
Q ss_pred HHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHH
Q 033887 28 LIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVA 75 (109)
Q Consensus 28 ~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~ 75 (109)
+.+.|+.+..+...|.++.+-++-...+++.|| ..++|.+.++-+
T Consensus 26 ~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~---~FV~f~~~~~A~ 70 (105)
T 2pe8_A 26 LEVETKEECEKYGKVGKCVIFEIPGAPDDEAVR---IFLEFERVESAI 70 (105)
T ss_dssp CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEE---EEEEESSHHHHH
T ss_pred HHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEE---EEEEECCHHHHH
Confidence 345666666677889999887653221234554 567899887544
No 127
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.08 E-value=65 Score=18.13 Aligned_cols=59 Identities=12% Similarity=0.240 Sum_probs=37.8
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
+-+..-.|...++++++.++.. ... |.++.+-++....+...+| -.++|.+.++.+.-.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~-------~~G-i~~v~i~~~~~~~g~~~g~---afV~f~~~~~a~~A~ 74 (104)
T 1wi8_A 16 YTAFLGNLPYDVTEESIKEFFR-------GLN-ISAVRLPREPSNPERLKGF---GYAEFEDLDSLLSAL 74 (104)
T ss_dssp EEEEEESCCSSCCHHHHHHHTT-------TSC-EEEEECCBCSSCTTSBCSC---EEEEESSHHHHHHHH
T ss_pred CEEEEeCCCCcCCHHHHHHHHH-------HCC-ceEEEEecCCCCCCCcCeE---EEEEECCHHHHHHHH
Confidence 4455556888888887655543 343 8888776664321345665 356899988877644
No 128
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=34.00 E-value=26 Score=20.13 Aligned_cols=57 Identities=14% Similarity=0.220 Sum_probs=33.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
+..=.|.+.++++++.++.+ ... .+ .+.++.+-++-.. ++++|| + .++|.+.++-+.
T Consensus 12 lfV~nL~~~~tee~L~~~F~---~~G-~i-~v~~v~i~~d~~t-g~srG~--a-FV~f~~~~~A~~ 68 (95)
T 2lkz_A 12 IILRNIAPHTVVDSIMTALS---PYA-SL-AVNNIRLIKDKQT-QQNRGF--A-FVQLSSAMDASQ 68 (95)
T ss_dssp EEEESCCTTCCHHHHHHHST---TTC-CC-CGGGEECCCCSSS-SSCSSE--E-EEECSSSHHHHH
T ss_pred EEEeCCCCcCCHHHHHHHHH---hhC-Cc-cEEEEEEEecCCC-CCCceE--e-EEEECCHHHHHH
Confidence 55568889999888766543 221 11 3556666666432 355666 3 367887765543
No 129
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=33.59 E-value=65 Score=18.01 Aligned_cols=61 Identities=11% Similarity=0.159 Sum_probs=39.0
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhc
Q 033887 7 VVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 79 (109)
Q Consensus 7 mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~ 79 (109)
.=+-+..-.|...++++++.++.. ....|.++.+-++- .+...|| -.++|.+.++.+.-..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~--~g~~~g~---afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFA-------RYGSVKEVKIITDR--TGVSKGY---GFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHG-------GGSCEEEEEEEECT--TSCEEEE---EEEEESSCCCHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-------hCCCeEEEEEEECC--CCCccce---EEEEECCHHHHHHHHh
Confidence 345566667888888887765542 34568888777764 2344454 4467888887766544
No 130
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=33.49 E-value=55 Score=19.32 Aligned_cols=28 Identities=7% Similarity=-0.101 Sum_probs=20.9
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhhhhcCC
Q 033887 13 LAKFKEGTAQDQIDQLIKDYANLVNLIE 40 (109)
Q Consensus 13 lf~~k~~~~~~~~~~~~~~l~~L~~~ip 40 (109)
+|=++|+.++++++++++.+..+-..-.
T Consensus 49 m~Il~P~l~ee~~~~~ve~~~~iI~~~g 76 (96)
T 2kjw_A 49 NIVLNPNLDQSQLALEKEIIQRALENYG 76 (96)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 3458899999999999887777654333
No 131
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.44 E-value=64 Score=17.88 Aligned_cols=59 Identities=8% Similarity=0.120 Sum_probs=36.9
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCee-EEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 8 VKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMK-SFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 8 i~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~-~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
-+.+..-.|...++++++.++.+. ...|. ++.+-++-.. +...+| -.++|.+.++.+.-
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~-------~G~i~~~v~i~~~~~~-g~~~g~---afV~f~~~~~a~~A 68 (99)
T 2div_A 9 AASLWMGDLEPYMDENFISRAFAT-------MGETVMSVKIIRNRLT-GIPAGY---CFVEFADLATAEKC 68 (99)
T ss_dssp SSEEEECSCCTTCCHHHHHHHHHH-------TTCCCCEEEEEECSSS-CCEEEE---EEEECSCHHHHHHH
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHH-------hCCcceEEEEeecCCC-CCcCCE---EEEEeCCHHHHHHH
Confidence 345556678888998887666542 34466 6666665422 233444 45789998876553
No 132
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.07 E-value=69 Score=18.16 Aligned_cols=58 Identities=17% Similarity=0.156 Sum_probs=36.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeE-EEeeeccCccccCCCccEEEEEEECCHHhHHHhhcC
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKS-FQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAH 80 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~-~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~h 80 (109)
+..-.|...++++++.++.. .+..|.. +.+-.+. .++..|| -.++|.+.++.+.-...
T Consensus 18 l~V~nLp~~~te~~l~~~F~-------~~G~v~~~v~i~~~~--~g~~~G~---afV~F~~~~~a~~A~~~ 76 (104)
T 1wg5_A 18 VRLRGLPFGCSKEEIVQFFS-------GLEIVPNGMTLPVDF--QGRSTGE---AFVQFASQEIAEKALKK 76 (104)
T ss_dssp EEEESCCTTCCHHHHHHHTT-------TCCEEEEEEECCBCS--SSCBCSE---EEEEESSHHHHHHHHTT
T ss_pred EEEeCCCCCCCHHHHHHHHH-------hcCCcceeEEEEECC--CCCcceE---EEEEECCHHHHHHHHHh
Confidence 44456788888877765543 3444554 6555552 3456666 56789999988776553
No 133
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.04 E-value=67 Score=17.99 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=35.8
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
+.+..-.|.+.++++++.++. .....|.++.+-++ + +...+| -+++|.+.++.+.-
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F-------~~~G~i~~v~i~~~-~--g~~~g~---afV~f~~~~~A~~A 71 (103)
T 2d9p_A 16 VNLYVKNLDDGIDDERLRKAF-------SPFGTITSAKVMME-G--GRSKGF---GFVCFSSPEEATKA 71 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHTT-------TTTSCEEEEEEEEC-S--SSEEEE---EEEEESSHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHH-------HhcCCEEEEEEEcC-C--CCcCEE---EEEEECCHHHHHHH
Confidence 445566788888887765443 34566888887776 2 233443 45789998876543
No 134
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=32.45 E-value=74 Score=18.31 Aligned_cols=57 Identities=7% Similarity=0.053 Sum_probs=35.4
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
+.+..-.|..+++++++.++.. ....|.++.+-++... +...|| -+++|.+.++.+.
T Consensus 41 ~~l~V~nlp~~~t~~~l~~~F~-------~~G~i~~~~i~~~~~~-g~~~g~---afV~f~~~~~A~~ 97 (118)
T 2khc_A 41 CNLFIYHLPQEFTDTDLASTFL-------PFGNVISAKVFIDKQT-SLSKCF---GFVSFDNPDSAQV 97 (118)
T ss_dssp EEEEEECSCTTCCHHHHHHHTT-------TSCEEEEEEECCCSSS-SCCCCE---EEEEEESSHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-------hcCCEEEEEEEeCCCC-CCcCcE---EEEEECCHHHHHH
Confidence 4555668888888877655532 4566888877666432 234554 3457777776544
No 135
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=32.30 E-value=1.5e+02 Score=21.90 Aligned_cols=57 Identities=12% Similarity=0.240 Sum_probs=36.4
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
.-|..-.|...++++++..+.. .+..|..+.+-.+... +...|| -+++|.+.++.+.
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~-------~~G~I~~v~i~~d~~t-g~~kG~---aFV~F~~~e~A~~ 159 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFE-------VYGPIKRIHMVYSKRS-GKPRGY---AFIEYEHERDMHS 159 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-------HcCCeeEEEeeccCCC-CCccce---EEEeeccHHHHHH
Confidence 4566778989999887766654 2455777777655321 234555 4557888776554
No 136
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=31.54 E-value=59 Score=16.90 Aligned_cols=54 Identities=19% Similarity=0.315 Sum_probs=32.7
Q ss_pred EeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhc
Q 033887 15 KFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 79 (109)
Q Consensus 15 ~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~ 79 (109)
.+..+++++++.++.+.. ..|.++.+-++-.. +.+.|| -.++|.|.++.+.-..
T Consensus 6 nLp~~~t~~~l~~~F~~~-------G~i~~v~i~~~~~~-~~~~g~---afV~f~~~~~a~~Ai~ 59 (75)
T 1iqt_A 6 GLSPDTPEEKIREYFGGF-------GEVESIELPMDNKT-NKRRGF---CFITFKEEEPVKKIME 59 (75)
T ss_dssp CCCSSCCHHHHHHHHHHH-------SCCSEECCCCSCCC-SSSCCC---EEEECSSSHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHhc-------CCeEEEEEEecCCC-CCcCCE---EEEEECCHHHHHHHHH
Confidence 567788888877766543 33555555444321 344555 4578888887666443
No 137
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=31.30 E-value=77 Score=18.14 Aligned_cols=59 Identities=10% Similarity=0.111 Sum_probs=37.5
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 8 VKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 8 i~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
-+.|..-.|...++++++.++.. ....|.++.+-++... +...+| -+++|.+.++.+.-
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~~-~~~~g~---afV~f~~~~~a~~A 73 (115)
T 2dgo_A 15 HFHVFVGDLSPEITTEDIKAAFA-------PFGRISDARVVKDMAT-GKSKGY---GFVSFFNKWDAENA 73 (115)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHG-------GGSCEEEEEEEECTTT-CCEEEE---EEEEESSHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHH-------hcCCeEEEEEEEcCCC-CCcceE---EEEEECCHHHHHHH
Confidence 35566667888889877655543 3455888887766431 233333 45789998876553
No 138
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=31.04 E-value=61 Score=16.89 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=33.5
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 13 LAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 13 lf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
.-.+.++++++++.++.+ ....|.++.+-++... +.+.|| -.++|.|.++.+.-.
T Consensus 4 v~nlp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~~-~~~~g~---afV~f~~~~~a~~a~ 58 (75)
T 2mss_A 4 VGGLSVNTTVEDVKHYFE-------QFGKVDDAMLMFDKTT-NRHRGF---GFVTFESEDIVEKVC 58 (75)
T ss_dssp EECCCSSCCHHHHHHHHH-------TTSCCSEECCCBCSSS-TTSCBE---EEEECSCHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHH-------hcCCEEEEEEEecCCC-CCcCcE---EEEEECCHHHHHHHH
Confidence 345777888887766543 2344666665554321 244554 457899998876644
No 139
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=30.29 E-value=95 Score=18.91 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=36.2
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
+-|..-.|...++++++.++.. .+..|.++.+-++... +...+| -+++|.+.++.+.-
T Consensus 40 ~~l~V~nlp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~~-~~~~g~---afV~f~~~~~A~~A 97 (156)
T 1h2v_Z 40 CTLYVGNLSFYTTEEQIYELFS-------KSGDIKKIIMGLDKMK-KTACGF---CFVEYYSRADAENA 97 (156)
T ss_dssp CEEEEESCCTTCCHHHHHHHHG-------GGSCEEEEEEEECTTT-CCEEEE---EEEEESSHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-------hcCCeEEEEEEecCCC-CccceE---EEEEECCHHHHHHH
Confidence 3455567888888877655543 3455888877666432 123344 46779998876553
No 140
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=30.28 E-value=81 Score=18.07 Aligned_cols=57 Identities=9% Similarity=0.075 Sum_probs=35.3
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
-+..-.|...++++++.++.. ....|.++.+-++... +...+| -+++|.+.++.+.-
T Consensus 27 ~l~V~nLp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~~-g~~~g~---afV~f~~~~~a~~A 83 (115)
T 2cpz_A 27 NLFIYHLPQEFGDQDLLQMFM-------PFGNVVSAKVFIDKQT-NLSKCF---GFVSYDNPVSAQAA 83 (115)
T ss_dssp CEEEESCCSSCCHHHHHHHHG-------GGSCCSEEEEEECSSS-CSEEEE---EEEECSSHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHH-------hcCCeEEEEEEECCCC-CCcCcc---EEEEECCHHHHHHH
Confidence 345567888888877765543 3455777777666422 223333 44789998876553
No 141
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=30.06 E-value=77 Score=17.80 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=36.4
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
+-+..-.|...++++++.++.. ....|.++.+-++.+ +...+| -.++|.+.++.+.
T Consensus 30 ~~l~V~nlp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~--g~~~g~---afV~f~~~~~a~~ 85 (107)
T 3ulh_A 30 GKLLVSNLDFGVSDADIQELFA-------EFGTLKKAAVHYDRS--GRSLGT---ADVHFERKADALK 85 (107)
T ss_dssp EEEEEESCCTTCCHHHHHHHHH-------TTSCEEEEEEEECTT--SCEEEE---EEEEESSHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-------hcCCeEEEEEEECCC--CCcceE---EEEEECCHHHHHH
Confidence 4456667888899887766543 355677887776652 233443 4577988877654
No 142
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.81 E-value=77 Score=17.70 Aligned_cols=57 Identities=9% Similarity=0.141 Sum_probs=36.2
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
+-|..-.|...++++++.++.. ....|..+.+-++... +...+| -+++|.+.++.+.
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~-------~~G~i~~v~i~~~~~~-~~~~g~---afV~f~~~~~A~~ 70 (103)
T 2dnm_A 14 ITLKVDNLTYRTSPDSLRRVFE-------KYGRVGDVYIPREPHT-KAPRGF---AFVRFHDRRDAQD 70 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHHT-------TTSCEEEEECCBCSSS-CSBCSC---EEEEESSSSHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHH-------hcCCEEEEEEEeCCCC-CCCCeE---EEEEECCHHHHHH
Confidence 4455667888889887765543 3456888877665432 244555 4567888776554
No 143
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=29.78 E-value=1e+02 Score=19.03 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCc
Q 033887 21 AQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGF 60 (109)
Q Consensus 21 ~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~ 60 (109)
+++.+++++..|..|...++.....+..+.......+.+|
T Consensus 57 d~e~L~~Il~~L~~lGA~~~~~~da~l~~a~~dgV~P~~F 96 (118)
T 3mgj_A 57 DERHVDEILNELRDLGAEIPEIEEVELQPAEKDMVLPEGF 96 (118)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEECCSSSCCBCCSCC
T ss_pred CHHHHHHHHHHHHHcCCcCCCCCCceEEEccccCcCCCCe
Confidence 6788999999999997778888888877766432334444
No 144
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=29.58 E-value=70 Score=17.12 Aligned_cols=58 Identities=10% Similarity=0.097 Sum_probs=36.3
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
+.+..-.+..+++++++.++.+ ....|.++.+-++... +.+.|| -.++|.|.++.+.-
T Consensus 7 ~~l~v~nlp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~~-~~~~g~---afV~f~~~~~A~~A 64 (87)
T 3bs9_A 7 FHVFVGDLSPEITTAAIAAAFA-------PFGRISDARVVKDMAT-GKSKGY---GFVSFFNKWDAENA 64 (87)
T ss_dssp EEEEEESCCTTCCHHHHHHHHG-------GGSCEEEEEEEECTTT-CCEEEE---EEEEESSHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHH-------hcCCEeEEEEEecCCC-CccceE---EEEEECCHHHHHHH
Confidence 3455567888888887765543 3455888877766432 233443 45789998876653
No 145
>1mwq_A Hypothetical protein HI0828; YCII_HAEIN, structural genomic structure 2 function project, S2F, unknown function; HET: MSE 1PE; 0.99A {Haemophilus influenzae} SCOP: d.58.4.7
Probab=29.41 E-value=83 Score=17.95 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=43.4
Q ss_pred eEEEEEEEEeCCCCCHHHHHHH----HHHHHhhhhcCCCeeEEEeeeccCcccc---CCCccEE-EEEEECCHHhHHHhh
Q 033887 7 VVKHVLLAKFKEGTAQDQIDQL----IKDYANLVNLIEPMKSFQWGKNVSIENL---HQGFTHI-FESTFESTEGVAEYV 78 (109)
Q Consensus 7 mi~HiVlf~~k~~~~~~~~~~~----~~~l~~L~~~ip~i~~~~~G~~~~~~~~---~~~~~~~-~~~~F~s~e~l~~Y~ 78 (109)
|.+-+|++..+++ +.+.+.++ .+.+..+.. .|+.-. .|+-...++. ++++.-+ ++++.+|.++..++.
T Consensus 3 Mm~y~v~~~~~~~-~~e~~~~~~~~H~~~l~~~~~--~G~l~~-~Gp~~~~~~~dp~~~e~~Gg~~i~~a~s~eea~~~~ 78 (101)
T 1mwq_A 3 HMYYVIFAQDIPN-TLEKRLAVREQHLARLKQLQA--ENRLLT-AGPNPAIDDENPSEAGFTGSTVIAQFENLQAAKDWA 78 (101)
T ss_dssp CCEEEEEEEECTT-CHHHHHHTHHHHHHHHHHHHH--TTCEEE-EEEEESSSSSSCGGGCEEEEEEEEECSSHHHHHHHH
T ss_pred CCEEEEEEEcCCC-cHHHHHHHHHHHHHHHHHHHh--CCEEEE-eecccCccCCCCCccccceEEEEEEeCCHHHHHHHH
Confidence 5678888888876 34445444 455556654 354333 4554422111 1123333 578999999888876
Q ss_pred c-ChhHHH
Q 033887 79 A-HPAHVE 85 (109)
Q Consensus 79 ~-hp~H~~ 85 (109)
. +|.+++
T Consensus 79 ~~dP~~~~ 86 (101)
T 1mwq_A 79 AQDPYVEA 86 (101)
T ss_dssp HTCHHHHT
T ss_pred HhCChhhc
Confidence 6 787654
No 146
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=29.08 E-value=54 Score=15.68 Aligned_cols=16 Identities=19% Similarity=0.196 Sum_probs=12.8
Q ss_pred CCCCHHHHHHHHHHHH
Q 033887 18 EGTAQDQIDQLIKDYA 33 (109)
Q Consensus 18 ~~~~~~~~~~~~~~l~ 33 (109)
|+.++++++.+++.++
T Consensus 16 ~nLtEeQrn~yI~slk 31 (34)
T 1l6x_B 16 PNLNEEQRNAKIKSIR 31 (34)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHhHHHHHh
Confidence 6778999998887665
No 147
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=28.99 E-value=45 Score=17.89 Aligned_cols=18 Identities=17% Similarity=0.409 Sum_probs=12.9
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 033887 17 KEGTAQDQIDQLIKDYAN 34 (109)
Q Consensus 17 k~~~~~~~~~~~~~~l~~ 34 (109)
|+..++++.++++++|..
T Consensus 2 kd~lt~eq~~aILkaLde 19 (57)
T 3fxd_A 2 KDQLSDEQKETILKALND 19 (57)
T ss_dssp --CCCHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHH
Confidence 677899999998887743
No 148
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=28.89 E-value=76 Score=17.34 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=30.1
Q ss_pred EeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 15 KFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 15 ~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
.|...++++++.++.+ ... ...|.++.+-.+-.. +++.|| -.++|.+.++.+.
T Consensus 8 nL~~~~t~~~l~~~F~---~~G--~~~v~~v~i~~~~~~-g~~kG~---afV~f~~~~~a~~ 60 (90)
T 3p5t_L 8 NLTWWTTDEDLTEAVH---SLG--VNDILEIKFFENRAN-GQSKGF---ALVGVGSEASSKK 60 (90)
T ss_dssp SCCTTCCHHHHHHHHH---TTT--CCCCCCEEEEECTTT-CCEEEE---EEECC-CHHHHHH
T ss_pred CCCCCCCHHHHHHHHH---HhC--CCceEEEEEEecCCC-CccCcE---EEEEECCHHHHHH
Confidence 5677788877766543 221 115777777666432 244555 3467888876554
No 149
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.43 E-value=77 Score=17.26 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=35.1
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
.+..-.|...++++++.++.+ ....|.++.+-++... +...+| -.++|.+.++-+.
T Consensus 17 ~l~v~nlp~~~t~~~l~~~f~-------~~G~v~~v~i~~~~~~-~~~~g~---afV~f~~~~~A~~ 72 (95)
T 2cqc_A 17 CLGVFGLSLYTTERDLREVFS-------KYGPIADVSIVYDQQS-RRSRGF---AFVYFENVDDAKE 72 (95)
T ss_dssp CEEEESCCSSCCHHHHHHHHH-------TTSCEEEEEEEECSSS-SSEEEE---EEEEESSHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHH-------hcCCeeEEEEEEcCCC-CCcccE---EEEEECCHHHHHH
Confidence 345567888888887665543 3456888877665432 123333 4568999887654
No 150
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.33 E-value=80 Score=17.43 Aligned_cols=57 Identities=12% Similarity=0.280 Sum_probs=36.9
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
+.+..-.|...++++++.++.. ....|.++.+-++... +...+| -+++|.+.++.+.
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~~-~~~~g~---afV~f~~~~~a~~ 65 (99)
T 1whw_A 9 GRLFVRNLSYTSSEEDLEKLFS-------AYGPLSELHYPIDSLT-KKPKGF---AFVTFMFPEHAVK 65 (99)
T ss_dssp EEEEEECCCTTCCHHHHHHHHH-------TTSCEEEEECCCCTTT-CCCCSE---EEEEESSHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-------hcCCEeEEEEEecCCC-CCcCeE---EEEEECCHHHHHH
Confidence 4555667888899887766554 3456777777665421 244555 4578999887654
No 151
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=28.32 E-value=1.3e+02 Score=19.94 Aligned_cols=56 Identities=9% Similarity=0.147 Sum_probs=36.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCC--CeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIE--PMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip--~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
|..-.|...++++++.++.. .+. .|.++.+-++-.. ++++|| -+++|.+.++.+.-
T Consensus 71 lfVgnL~~~~te~~L~~~F~-------~~G~~~v~~v~i~~d~~t-g~skGf---aFV~f~~~~~a~~A 128 (229)
T 3q2s_C 71 LYIGNLTWWTTDEDLTEAVH-------SLGVNDILEIKFFENRAN-GQSKGF---ALVGVGSEASSKKL 128 (229)
T ss_dssp EEEESCCTTCCHHHHHHHHH-------TTTCCCEEEEEEEECTTT-CCEEEE---EEEEESCTTHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHH-------HHCCcceEEEEEEecCCC-CccceE---EEEEECCHHHHHHH
Confidence 56667888889887766543 234 6888888776432 245555 44578888766553
No 152
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=28.23 E-value=84 Score=17.61 Aligned_cols=58 Identities=9% Similarity=0.153 Sum_probs=36.7
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
+-+..-.|...++++++.++.. ....|.++.+-++... +...|| -.++|.+.++.+.-
T Consensus 24 ~~l~V~nlp~~~t~~~l~~~f~-------~~G~i~~v~i~~~~~~-~~~~g~---afV~f~~~~~a~~A 81 (106)
T 1p27_B 24 WILFVTGVHEEATEEDIHDKFA-------EYGEIKNIHLNLDRRT-GYLKGY---TLVEYETYKEAQAA 81 (106)
T ss_dssp EEEEEECCCTTCCHHHHHHHHG-------GGSCEEEEEEEECTTT-SSEEEE---EEEEESCHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHh-------ccCCeEEEEEEecCCC-CceeeE---EEEEECCHHHHHHH
Confidence 3455667888888887655543 3456888877666432 233444 45689998876553
No 153
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.18 E-value=82 Score=17.50 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=34.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
-|..-.|...++++++.++.. ....|.++.+-++-.. +...+| -+++|.+.++.+.-
T Consensus 14 ~l~V~nLp~~~t~~~l~~~f~-------~~G~i~~v~i~~~~~~-~~~~g~---afV~f~~~~~A~~A 70 (102)
T 2cqb_A 14 VLYVGGLAEEVDDKVLHAAFI-------PFGDITDIQIPLDYET-EKHRGF---AFVEFELAEDAAAA 70 (102)
T ss_dssp CEEEESCCSSCCHHHHHHHHT-------TTSCCCCEECCCCSSS-CCCSSE---EEECCSSHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHhh-------ccCCEEEEEEEecCCC-CCcceE---EEEEECCHHHHHHH
Confidence 344556888888877766543 2445667766555321 234555 45789988876553
No 154
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=28.16 E-value=75 Score=17.06 Aligned_cols=59 Identities=8% Similarity=0.135 Sum_probs=36.8
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
+-+..-.|...++++++.++.. ....|.++.+-++... +.+.|| -.++|.+.++.+.-.
T Consensus 12 ~~l~V~nlp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~~-g~~~g~---afV~f~~~~~a~~A~ 70 (87)
T 3s7r_A 12 GKMFVGGLSWDTSKKDLKDYFT-------KFGEVVDCTIKMDPNT-GRSRGF---GFILFKDAASVEKVL 70 (87)
T ss_dssp TEEEEECCCTTCCHHHHHHHHT-------TTSCEEEEEEEECTTT-CCEEEE---EEEEESSTHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-------hCCCEEEEEEeecCCC-CccccE---EEEEECCHHHHHHHH
Confidence 3455567888888887765543 3556888877665421 233444 346888888766533
No 155
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=28.03 E-value=85 Score=17.64 Aligned_cols=55 Identities=11% Similarity=0.135 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 18 EGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 18 ~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
|.++++..+...+.|+.+-.....|.++.+-++-.+ ++++|| -.++|.+.++-+.
T Consensus 15 p~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~t-g~~kG~---afV~f~~~~~A~~ 69 (100)
T 3ns6_A 15 PVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEAT-GKTKGF---LFVECGSMNDAKK 69 (100)
T ss_dssp CCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTT-TEECSE---EEEEESSHHHHHH
T ss_pred CcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCC-CccceE---EEEEECCHHHHHH
Confidence 444444445555666677667778998888776542 355666 3478998876654
No 156
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=27.99 E-value=99 Score=21.94 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=22.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCe
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPM 42 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i 42 (109)
+...+.|.++++++++.+.++.|..-++ +.||
T Consensus 66 ~~~~~~lp~~~s~~ell~~I~~lN~d~~-v~GI 97 (286)
T 4a5o_A 66 LSQAYDLPAETSQDDLLALIDRLNDDPA-IDGI 97 (286)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHTCTT-CCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCC-CCEE
Confidence 4567789999999888777776666643 4443
No 157
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=27.80 E-value=1e+02 Score=21.89 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=22.3
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCe
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPM 42 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i 42 (109)
+...+.|.++++++++.+.++.+..-++ +-||
T Consensus 65 ~~~~~~lp~~~s~~ell~~I~~lN~d~~-v~GI 96 (285)
T 3l07_A 65 DSQVITLPEHTTESELLELIDQLNNDSS-VHAI 96 (285)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHTCTT-CCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCC-CcEE
Confidence 4567789999998888777766666543 4443
No 158
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=27.68 E-value=1.1e+02 Score=21.76 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=22.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCe
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPM 42 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i 42 (109)
+...+.|.++++++++.+.++.+..-++ +-||
T Consensus 64 ~~~~~~lp~~~s~~ell~~I~~lN~d~~-v~GI 95 (285)
T 3p2o_A 64 KSLVYHLNENITQNELLALINTLNHDDS-VHGI 95 (285)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHCTT-CCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCC-CCEE
Confidence 4567789999999888777776666643 4443
No 159
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=27.54 E-value=1e+02 Score=22.05 Aligned_cols=32 Identities=13% Similarity=0.164 Sum_probs=22.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCe
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPM 42 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i 42 (109)
+...+.|.++++++++.+.++.|..-++ +.||
T Consensus 68 ~~~~~~lp~~~s~~ell~~I~~lN~d~~-v~GI 99 (300)
T 4a26_A 68 ASFNVELPEDISQEVLEVNVEKLNNDPN-CHGI 99 (300)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHTCTT-CCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCC-CCEE
Confidence 4567889999999888777776666543 4443
No 160
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=27.49 E-value=1.3e+02 Score=21.36 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=34.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccC
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVS 52 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~ 52 (109)
.+.|-|-|+.+.+..+.+.+.+..|...-|...++++|..-+
T Consensus 24 ~~S~E~fPPk~~~~~~~l~~~~~~l~~l~p~fvsVT~gagg~ 65 (304)
T 3fst_A 24 NVSFEFFPPRTSEMEQTLWNSIDRLSSLKPKFVSVTYGANSG 65 (304)
T ss_dssp EEEEEECCCCSHHHHHHHHHHHHHHHTTCCSEEEECCCTTSS
T ss_pred EEEEEEcCCCCccHHHHHHHHHHHHhcCCCCEEEEeeCCCCc
Confidence 588999999998888888888888876668888888887654
No 161
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.36 E-value=86 Score=17.48 Aligned_cols=59 Identities=12% Similarity=0.159 Sum_probs=37.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhc
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 79 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~ 79 (109)
.+..-.|...++++++.++.. ....|.++.+-++... +.+.|| -+++|.+.++.+.-..
T Consensus 17 ~l~v~nlp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~~-g~~~g~---afV~f~~~~~a~~A~~ 75 (103)
T 2cqg_A 17 DLIVLGLPWKTTEQDLKEYFS-------TFGEVLMVQVKKDLKT-GHSKGF---GFVRFTEYETQVKVMS 75 (103)
T ss_dssp CEEEESCCSSCCHHHHHHHHG-------GGSCEEEEEEEECSSS-CSEEEE---EEEEESSHHHHHHHHH
T ss_pred EEEEEcCCCcCCHHHHHHHHH-------hcCCeEEEEEEecCCC-CCccce---EEEEECCHHHHHHHHH
Confidence 355557888888887665543 3456888877766432 233444 4578999888766544
No 162
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=27.24 E-value=49 Score=15.26 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHHhhh
Q 033887 20 TAQDQIDQLIKDYANLV 36 (109)
Q Consensus 20 ~~~~~~~~~~~~l~~L~ 36 (109)
.+++.-+++.+.|++|.
T Consensus 12 ~~eekEDkLAqRLRALR 28 (29)
T 3ggz_E 12 VDDEKEDKLAQRLRALR 28 (29)
T ss_pred ccchhhHHHHHHHHHHc
Confidence 56677788888888885
No 163
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.50 E-value=96 Score=17.70 Aligned_cols=56 Identities=7% Similarity=0.128 Sum_probs=35.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
-|..-.|...++++++.++.. .+..|.++.+-.+-.. +...|| -+++|.+.++.+.
T Consensus 27 ~l~V~nlp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~~-g~~~g~---afV~f~~~~~a~~ 82 (114)
T 2cq4_A 27 TVFCMQLAARIRPRDLEDFFS-------AVGKVRDVRIISDRNS-RRSKGI---AYVEFCEIQSVPL 82 (114)
T ss_dssp EEEEESCCTTCCHHHHHHHHT-------TTSCEEEEEECCSCCS-SSCCCC---EEEEESCGGGHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHH-------hCCCEeEEEEEecCCC-CccCcE---EEEEeCcHHHHHH
Confidence 345557788888877655542 4566888877665432 345565 4567888877654
No 164
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=26.34 E-value=1e+02 Score=17.92 Aligned_cols=57 Identities=9% Similarity=0.168 Sum_probs=37.5
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
.-|..-.|...++++++.++.. ....|.++.+-.+-.. +...+| -+++|.+.++.+.
T Consensus 23 ~~l~V~nlp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~~-~~~~g~---afV~f~~~~~a~~ 79 (126)
T 3ex7_B 23 WILFVTGVHEEATEEDIHDKFA-------EYGEIKNIHLNLDRRT-GYLKGY---TLVEYETYKEAQA 79 (126)
T ss_dssp EEEEEESCCTTCCHHHHHHHHH-------TTSCEEEEECCBCTTT-SSBCSC---EEEEESSHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-------hcCCeEEEEEEecCCC-CccceE---EEEEECCHHHHHH
Confidence 4566678888889887766543 3556888877666432 234555 3468998877655
No 165
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.10 E-value=93 Score=17.41 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=35.5
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
-|..-.|...++++++.++.. ....|.++.+-++... +...+| -+++|.+.++.+.-
T Consensus 18 ~l~V~nlp~~~t~~~l~~~F~-------~~G~v~~v~i~~~~~~-g~~~g~---afV~f~~~~~a~~a 74 (105)
T 2dh8_A 18 KLFVGGLDWSTTQETLRSYFS-------QYGEVVDCVIMKDKTT-NQSRGF---GFVKFKDPNCVGTV 74 (105)
T ss_dssp EECCBSCCTTCCHHHHHHHHH-------TTSCEEEEEEEECSSS-CCEEEE---EEEEESSTTHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHH-------hcCCeEEEEEeeCCCC-CCcceE---EEEEECCHHHHHHH
Confidence 344456788888887766543 3556888877766421 233443 45789988876553
No 166
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.86 E-value=1e+02 Score=17.68 Aligned_cols=61 Identities=5% Similarity=0.038 Sum_probs=39.8
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhc
Q 033887 8 VKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 79 (109)
Q Consensus 8 i~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~ 79 (109)
-+.|..-.|...++++++.++.. ....|.++.+-++-.. +...+| -+++|.+.++.+.-..
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~~-~~~~g~---afV~f~~~~~a~~Ai~ 77 (116)
T 2cqd_A 17 FTKIFVGGLPYHTTDASLRKYFE-------GFGDIEEAVVITDRQT-GKSRGY---GFVTMADRAAAERACK 77 (116)
T ss_dssp SSEEEEECCCSSCCHHHHHHHHH-------TTSCEEEEEESCCSSS-CCCCSE---EEEEESSHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-------hCCCeeEEEEEEcCCC-CccceE---EEEEECCHHHHHHHHH
Confidence 34566667888999888766643 3455888877666432 234554 4468999988776544
No 167
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=25.76 E-value=1.2e+02 Score=18.45 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=35.2
Q ss_pred EEEEEEE-eCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 9 KHVLLAK-FKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 9 ~HiVlf~-~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
.-.|.++ +++... +++.+ .+. .+|+|..+.. .++.||+.+.+..+|.++++.+.
T Consensus 68 ~a~v~~~~~~~~~~----~~~~~---~l~-~~p~V~~~~~--------~~G~~d~~~~v~~~~~~~l~~~l 122 (150)
T 2w25_A 68 SAFVAITPLDPSQP----DDAPA---RLE-HIEEVESCYS--------VAGEASYVLLVRVASARALEDLL 122 (150)
T ss_dssp EEEEEEEESCTTSC----CCHHH---HHT-TCTTEEEEEE--------ESSSCSEEEEEEESSHHHHHHHH
T ss_pred EEEEEEEEcCCCCH----HHHHH---HHh-cCcCeEEEEE--------eECCCCEEEEEEECCHHHHHHHH
Confidence 3445556 555432 33333 333 4788876632 23679999999999999999876
No 168
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.75 E-value=47 Score=20.07 Aligned_cols=60 Identities=8% Similarity=0.008 Sum_probs=36.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcC-CCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhc
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLI-EPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 79 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~i-p~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~ 79 (109)
|.+-.|...++++++.++.+. +. .| ..|.++.+-.+. .+++.|| -+++|.+.++.+.-..
T Consensus 26 v~V~nLp~~~te~dl~~~F~~---~g-~v~g~v~~v~i~~d~--~gr~~G~---aFV~F~~~~~A~~Al~ 86 (123)
T 2dha_A 26 VRMRGLPFTATAEEVVAFFGQ---HC-PITGGKEGILFVTYP--DGRPTGD---AFVLFACEEYAQNALR 86 (123)
T ss_dssp EEECSCCTTCCHHHHHHHHHT---TS-CCTTGGGGEEEEECT--TSCEEEE---EEECCSSHHHHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHh---hC-CccCCcceEEEEECC--CCCEeeE---EEEEECCHHHHHHHHH
Confidence 334467788898888777553 32 23 235566666653 3455665 3458999988776443
No 169
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=25.71 E-value=94 Score=17.34 Aligned_cols=57 Identities=7% Similarity=0.131 Sum_probs=36.5
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
+.+..-.|...++++++.++.. ....|.++.+-++.+ +...+| -+++|.+.++-+.-
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~--g~~~g~---afV~f~~~~~A~~A 72 (105)
T 2dnh_A 16 RKLFVGMLNKQQSEEDVLRLFQ-------PFGVIDECTVLRGPD--GSSKGC---AFVKFSSHTEAQAA 72 (105)
T ss_dssp CEEEEESCCTTCCHHHHHHHHT-------TTSCEEEEEEEECSS--SCEEEE---EEEEESSHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-------hcCCeEEEEEEECCC--CCcCcE---EEEEeCCHHHHHHH
Confidence 3455567888888877655543 345588888776642 234444 44689998876653
No 170
>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A
Probab=25.68 E-value=89 Score=17.06 Aligned_cols=54 Identities=9% Similarity=0.176 Sum_probs=30.0
Q ss_pred EEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhcCh
Q 033887 14 AKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVAHP 81 (109)
Q Consensus 14 f~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~hp 81 (109)
..||++++.+.++...+.+....+ +|... +..+. =-++...| +.+.++.-+.||
T Consensus 7 V~lk~~~~~~~~~~~~~~~~~~gg---~i~~~-y~~~~---------~~Gfa~~~-~~~~l~~l~~~~ 60 (76)
T 1v5i_B 7 VIFKNDVSEDKIRETKDEVIAEGG---TITNE-YNMPG---------MKGFAGEL-TPQSLTKFQGLQ 60 (76)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHTC---CCCEE-EEETT---------EEEEEEEE-CHHHHHHHHHTB
T ss_pred EEECCCCCHHHHHHHHHHHHhhCC---ceEEE-EEcCc---------eeEEEEEc-CHHHHHHHHhcC
Confidence 356899998888776666555432 12211 11010 12456666 556677777774
No 171
>1ftr_A FTR, formylmethanofuran\:tetrahydromethanopterin formyltransferase; methanogenesis, archae, acyltransferase, hyperthermophilic, halophilic; 1.70A {Methanopyrus kandleri} SCOP: d.58.33.1 d.58.33.1 PDB: 2fhj_A* 2fhk_A*
Probab=25.61 E-value=1.6e+02 Score=21.08 Aligned_cols=40 Identities=8% Similarity=0.126 Sum_probs=28.5
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHH-HHHHHhhhhcCCCeeEEEeeec
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQL-IKDYANLVNLIEPMKSFQWGKN 50 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~-~~~l~~L~~~ip~i~~~~~G~~ 50 (109)
..+.-||. ++.+.+.+++. ..++++... +|||+.++.|-=
T Consensus 241 ~~V~EIVI----dGl~~~aV~~AMraGi~Aa~~-~~Gv~~IsAGNY 281 (296)
T 1ftr_A 241 KCVYEIVI----NGLNEEAVKEAMRVGIEAACQ-QPGVVKISAGNF 281 (296)
T ss_dssp CEEEEEEE----EESSHHHHHHHHHHHHHHHTT-STTEEEEECCCS
T ss_pred CeEEEEEE----cCCCHHHHHHHHHHHHHHHhc-cCCeEEEecCCc
Confidence 44556666 67788877554 467777764 899999998843
No 172
>1m5s_A Formylmethanofuran--tetrahydromethanopterin formyltransferase; alpha/beta sandwich; 1.85A {Methanosarcina barkeri} SCOP: d.58.33.1 d.58.33.1
Probab=25.59 E-value=1.6e+02 Score=21.11 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=28.5
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHH-HHHHHhhhhcCCCeeEEEeeec
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQL-IKDYANLVNLIEPMKSFQWGKN 50 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~-~~~l~~L~~~ip~i~~~~~G~~ 50 (109)
..+.-||. ++.+.+.+++. ..++++... +|||+.++.|-=
T Consensus 242 ~~V~EIVI----dGl~~~aV~~AmraGi~Aa~~-~~Gv~~IsAGNY 282 (297)
T 1m5s_A 242 NAVYEIVI----NGLDEESIKAAMKAGIKAAVT-VPGVKKISAGNY 282 (297)
T ss_dssp CEEEEEEE----EESSHHHHHHHHHHHHHHHTT-STTEEEEECCCC
T ss_pred CeEEEEEE----cCCCHHHHHHHHHHHHHHHhc-cCCeEEEecCCc
Confidence 34566666 67788877554 467777764 899999998843
No 173
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*
Probab=25.49 E-value=2e+02 Score=21.08 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=28.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccC
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVS 52 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~ 52 (109)
-+.+.++.+++.+++.++++.... +.+.||+.++=-+-+|
T Consensus 259 dlt~~lek~~t~eei~~~lk~A~~--g~lkgil~yte~~~VS 298 (359)
T 3ids_C 259 DLTFTAARDTSIQEIDAALKRASK--TYMKGILGYTDEELVS 298 (359)
T ss_dssp EEEEECSSCCCHHHHHHHHHHHHH--TTTTTTEEEECSCCCG
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc--CccCCceeEecCCEEe
Confidence 356788999999999888765543 3567888887544333
No 174
>1m5h_A Formylmethanofuran--tetrahydromethanopterin formyltransferase; alpha/beta sandwich; 2.00A {Archaeoglobus fulgidus} SCOP: d.58.33.1 d.58.33.1
Probab=25.47 E-value=1.6e+02 Score=21.09 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=28.6
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHH-HHHHHhhhhcCCCeeEEEeeec
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQL-IKDYANLVNLIEPMKSFQWGKN 50 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~-~~~l~~L~~~ip~i~~~~~G~~ 50 (109)
..+.-||. ++.+.+.+++. ..++++... +|||+.++.|-=
T Consensus 242 ~~V~EIVI----dGl~~~aV~~AmraGi~Aa~~-~~Gv~~IsAGNY 282 (297)
T 1m5h_A 242 KAVYEIVI----NGLNADAIKEATRVGILAATK-IPGVVKITAGNY 282 (297)
T ss_dssp CEEEEEEE----EESSHHHHHHHHHHHHHHHTT-STTEEEEECCCC
T ss_pred CeEEEEEE----cCCCHHHHHHHHHHHHHHHhc-cCCeEEEecCCc
Confidence 34566666 67788877554 467777764 899999998843
No 175
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=25.43 E-value=1.1e+02 Score=17.88 Aligned_cols=39 Identities=8% Similarity=-0.062 Sum_probs=27.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhhhhcCCC-eeE-EEeeecc
Q 033887 13 LAKFKEGTAQDQIDQLIKDYANLVNLIEP-MKS-FQWGKNV 51 (109)
Q Consensus 13 lf~~k~~~~~~~~~~~~~~l~~L~~~ip~-i~~-~~~G~~~ 51 (109)
+|=++|+.++++++++++.+..+-..-.| |.+ -.||+-.
T Consensus 7 ~~Il~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~ 47 (101)
T 1cqm_A 7 NIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRR 47 (101)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcc
Confidence 45578999999999999888777655565 333 4567443
No 176
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=25.30 E-value=1.1e+02 Score=18.12 Aligned_cols=39 Identities=8% Similarity=0.216 Sum_probs=27.1
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhhhhcCCC-eeE-EEeeecc
Q 033887 13 LAKFKEGTAQDQIDQLIKDYANLVNLIEP-MKS-FQWGKNV 51 (109)
Q Consensus 13 lf~~k~~~~~~~~~~~~~~l~~L~~~ip~-i~~-~~~G~~~ 51 (109)
+|=++|+.++++++++++.+..+-..-.| |.. -.||+--
T Consensus 13 ~~Il~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~ 53 (110)
T 2j5a_A 13 VFAVKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQ 53 (110)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcc
Confidence 34568999999999998888777655555 333 4577544
No 177
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=25.15 E-value=85 Score=16.65 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=35.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
-+..-.+.+.++++++.++.. ....|.++.+-++... +...|| -.++|.+.++-+.
T Consensus 9 ~l~V~nl~~~~~~~~l~~~f~-------~~G~i~~v~i~~~~~~-~~~~g~---afV~f~~~~~a~~ 64 (85)
T 3mdf_A 9 VLYVGGLAEEVDDKVLHAAFI-------PFGDITDIQIPLDYET-EKHRGF---AFVEFELAEDAAA 64 (85)
T ss_dssp EEEEECCCTTCCHHHHHHHHG-------GGSCEEEEECCEETTT-TEECSE---EEEEESSHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHh-------ccCCEEEEEEEECCCC-CccccE---EEEEECCHHHHHH
Confidence 455567888888877765543 3456888877666322 234554 4568998877654
No 178
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=25.13 E-value=1.1e+02 Score=18.31 Aligned_cols=46 Identities=4% Similarity=-0.137 Sum_probs=30.0
Q ss_pred HHHHHHHhhhhcCCCeeEEEeeeccCc---cccCCCccEEEEEEECCHHhHH
Q 033887 27 QLIKDYANLVNLIEPMKSFQWGKNVSI---ENLHQGFTHIFESTFESTEGVA 75 (109)
Q Consensus 27 ~~~~~l~~L~~~ip~i~~~~~G~~~~~---~~~~~~~~~~~~~~F~s~e~l~ 75 (109)
++.+.++....+...|.++.+-++... .+++.|+ ..++|.+.++-+
T Consensus 37 dleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~---~FV~F~~~e~A~ 85 (118)
T 3ue2_A 37 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVK---IFVEFSIASETH 85 (118)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEE---EEEEESSHHHHH
T ss_pred HHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEE---EEEEECCHHHHH
Confidence 456677777778888999988877531 1122233 567898876543
No 179
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=25.13 E-value=87 Score=16.77 Aligned_cols=57 Identities=11% Similarity=0.145 Sum_probs=35.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
+..-.+...++++++.++.+ ....|.++.+-++... +.+.|| -.++|.+.++.+.-.
T Consensus 9 l~V~nlp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~~-~~~~g~---afV~f~~~~~a~~a~ 65 (89)
T 3ucg_A 9 IYVGNVDYGATAEELEAHFH-------GCGSVNRVTILCDKFS-GHPKGF---AYIEFSDKESVRTSL 65 (89)
T ss_dssp EEEESCCTTCCHHHHHHHHG-------GGCCEEEEEEEESCSS-SSCCEE---EEEEESSTHHHHHHG
T ss_pred EEEeCCCCCCCHHHHHHHHH-------hCCCEEEEEEEecCCC-CCcceE---EEEEECCHHHHHHHH
Confidence 34456778888877665543 3456888877766432 234444 446788887766543
No 180
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=24.95 E-value=94 Score=17.09 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=34.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 12 LLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 12 Vlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
..-.+..+++++++.++.+ ....|.++.+-++... +.+.|| -.++|.|.++.+.-
T Consensus 6 ~V~nLp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~~-g~~~g~---afV~f~~~~~A~~A 60 (96)
T 2x1f_A 6 YLGSIPYDQTEEQILDLCS-------NVGPVINLKMMFDPQT-GRSKGY---AFIEFRDLESSASA 60 (96)
T ss_dssp EEESCCTTCCHHHHHHHHH-------TTSCEEEEECCBCTTT-CCBCSE---EEEEESSHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHH-------hcCCEEEEEEEeCCCC-CccceE---EEEEECCHHHHHHH
Confidence 3446777888877655543 3456888877666432 244555 35789998876543
No 181
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.88 E-value=92 Score=16.93 Aligned_cols=56 Identities=7% Similarity=0.083 Sum_probs=35.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
+..-.+...++++++.++. .....|.++.+-++... +...+| -.++|.+.++-+.-
T Consensus 19 l~V~nlp~~~t~~~l~~~f-------~~~G~v~~v~i~~~~~~-~~~~g~---afV~f~~~~~A~~A 74 (94)
T 2e5h_A 19 VYVSNLPFSLTNNDLYRIF-------SKYGKVVKVTIMKDKDT-RKSKGV---AFILFLDKDSAQNC 74 (94)
T ss_dssp EEEESCCTTSCHHHHHHHT-------TTTSCEEEEEECCCSSS-CCCTTC---EEEEESCHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHH-------HhcCCeEEEEEEeCCCC-CCcccE---EEEEECCHHHHHHH
Confidence 4445688888887765543 24556888877665432 234555 45689998876543
No 182
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=24.75 E-value=1.2e+02 Score=18.50 Aligned_cols=60 Identities=8% Similarity=0.080 Sum_probs=37.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhc
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 79 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~ 79 (109)
+..-.|..+++++++.++.+ .. +.+.+|.++.+-++.. +++.|| -.++|.+.++.+.-..
T Consensus 47 lfVgnLp~~~te~dL~~~F~---~~-G~v~~v~~v~i~~d~~--g~srG~---aFV~F~~~e~a~~Al~ 106 (136)
T 2hgl_A 47 VKLRGLPWSCSVEDVQNFLS---DC-TIHDGAAGVHFIYTRE--GRQSGE---AFVELGSEDDVKMALK 106 (136)
T ss_dssp EEEESCCTTCCHHHHHHHTT---TC-CCSSSSTTEEEEECSS--SCEEEE---EEEECSSHHHHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHH---Hh-CCcCceeEEEEEECCC--CCCCeE---EEEEECCHHHHHHHHh
Confidence 45557888889888766643 33 2222366666665543 455665 4578999988776443
No 183
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.62 E-value=93 Score=16.94 Aligned_cols=57 Identities=11% Similarity=0.153 Sum_probs=36.1
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
-+..-.|...++++++.++.+ ....|.++.+-++... +...+| -.++|.+.++.+.-
T Consensus 7 ~l~v~nlp~~~t~~~l~~~f~-------~~G~v~~v~i~~~~~~-~~~~g~---afV~f~~~~~a~~A 63 (95)
T 2dnz_A 7 GLYVGSLHFNITEDMLRGIFE-------PFGKIDNIVLMKDSDT-GRSKGY---GFITFSDSECARRA 63 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHHT-------TTSCEEEEEEECCSSS-CCCCSE---EEEEESCHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHH-------hcCCEeEEEEeecCCC-CceeeE---EEEEECCHHHHHHH
Confidence 344557888888887665543 3456888877766432 234554 45789988876653
No 184
>2cy5_A Epidermal growth factor receptor pathway substrate 8-like protein 1; structural genomics, signal transduction, phosphorylation, PTB domain, NPPSFA; 1.90A {Mus musculus} SCOP: b.55.1.2 PDB: 2cy4_A
Probab=24.53 E-value=63 Score=20.52 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=23.5
Q ss_pred CCCC-CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhh
Q 033887 1 MEEA-KGVVKHVLLAKFKEGTAQDQIDQLIKDYANL 35 (109)
Q Consensus 1 m~~~-~~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L 35 (109)
|.++ .=.+.|...|++.+.......+..++.|..|
T Consensus 5 ~~~~~qy~VeHL~Tf~l~~~~~~~~~~D~irkL~~l 40 (140)
T 2cy5_A 5 MADVSQYHVNHLVTFCLGEEDGVHTVEDASRKLAVM 40 (140)
T ss_dssp CCSSEEEEEEEEEEEECCTTSSCCSHHHHHHHHHHH
T ss_pred ecCCccEEEeeeEEEEeCCcCCcCCHHHHHHHHHhH
Confidence 4453 4478999999999876444455555556555
No 185
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=24.52 E-value=1.1e+02 Score=17.69 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=37.5
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
-+..-.|..+++++++.++.. ....|.++.+-++-.. +.+.|| -+++|.+.++.+.-.
T Consensus 38 ~l~V~nlp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~~-~~~~g~---afV~f~~~~~a~~A~ 95 (124)
T 2jwn_A 38 SVYVGNVDYGSTAQDLEAHFS-------SCGSINRITILCDKFS-GHPKGY---AYIEFAERNSVDAAV 95 (124)
T ss_dssp EEEEEEECTTCCHHHHHHHHH-------TTSCEEEEEEEEECTT-SSCEEE---EEEEESSHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHH-------hcCCEEEEEEEecCCC-CCcccE---EEEEECCHHHHHHHH
Confidence 345567888889888766644 3556888877766321 233444 457899998776644
No 186
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=24.51 E-value=83 Score=18.36 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=16.4
Q ss_pred HHHHHHHHhhhhcCCCeeEEEeeecc
Q 033887 26 DQLIKDYANLVNLIEPMKSFQWGKNV 51 (109)
Q Consensus 26 ~~~~~~l~~L~~~ip~i~~~~~G~~~ 51 (109)
+++.+.+..+. .+|||++.+.--..
T Consensus 54 ~~l~~~i~~I~-~i~GVlst~lvy~~ 78 (95)
T 2jsx_A 54 ETLIQTIESVR-NVEGVLAVSLVYHQ 78 (95)
T ss_dssp HHHHHHHHHHT-TSTTEEEEEESSCC
T ss_pred HHHHHHHHHHh-cCCCccEEeEEEEE
Confidence 44455566775 48999998766544
No 187
>2qlw_A RHAU; mutarotase, isomerase; HET: MSE; 1.60A {Rhizobium leguminosarum BV} PDB: 2qlx_A*
Probab=24.46 E-value=1.4e+02 Score=18.95 Aligned_cols=83 Identities=11% Similarity=0.048 Sum_probs=56.1
Q ss_pred CCCeEEEEEEEEeCCCCCHHHHHHH-----HHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 4 AKGVVKHVLLAKFKEGTAQDQIDQL-----IKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 4 ~~~mi~HiVlf~~k~~~~~~~~~~~-----~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
.++|.+.....+|||+.-+| -++. =+-+..|+. -||..+++=.... ++ ...-+++-++.++.++-.
T Consensus 38 ~~~MkR~af~m~Lkp~~~eE-Yk~~Ha~VWPEv~~~Lk~--aGI~nYSIfl~~~-----~~-~LF~~~E~~dda~~a~ma 108 (144)
T 2qlw_A 38 DMTLEKHAFKMQLNPGMEAE-YRKRHDEIWPELVDLLHQ--SGASDYSIHLDRE-----TN-TLFGVLTRPKDHTMASLP 108 (144)
T ss_dssp CCCEEEEEEEEEBCTTCHHH-HHHHHHTCCHHHHHHHHH--HTCEEEEEEEETT-----TT-EEEEEEEEETTCCGGGGG
T ss_pred CccceEEEEEEEcCchHHHH-HHHHHHhCCHHHHHHHHH--cCCeEEEEEEECC-----CC-eEEEEEEEcCHHHHHhcc
Confidence 46788999999999986533 2222 133455554 5899998887631 11 344555667767777777
Q ss_pred cChhHHHHHHHHhhhhc
Q 033887 79 AHPAHVEYANLFLANLE 95 (109)
Q Consensus 79 ~hp~H~~~~~~~~p~~~ 95 (109)
.+|.=++.-+...++.+
T Consensus 109 ~~pv~qrWwa~M~~~~~ 125 (144)
T 2qlw_A 109 DHPVMKKWWAHMADIMA 125 (144)
T ss_dssp GCHHHHHHHHHHGGGBC
T ss_pred CChHHHHHHHHHHHHhc
Confidence 89999999888777653
No 188
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.44 E-value=1.1e+02 Score=17.61 Aligned_cols=58 Identities=7% Similarity=-0.016 Sum_probs=36.2
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCe-eEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhc
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPM-KSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 79 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i-~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~ 79 (109)
-|..-.|...++++++.++.. .+..| .++.+-.+. .++..|| -+++|.+.++.+.-..
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~-------~~g~v~~~v~i~~d~--~g~~~G~---afV~F~~~~~a~~Al~ 75 (114)
T 2cpy_A 17 CAHITNIPFSITKMDVLQFLE-------GIPVDENAVHVLVDN--NGQGLGQ---ALVQFKNEDDARKSER 75 (114)
T ss_dssp EEEEESCCTTSCHHHHHHHTT-------TSCCCSTTEEECCCT--TSSCSSC---EEEECSSHHHHHHHGG
T ss_pred EEEEeCcCCcCCHHHHHHHHH-------hCCCcCCeEEEEECC--CCCcceE---EEEEECCHHHHHHHHH
Confidence 345557888889888766543 23334 445555544 2456676 4578999998776543
No 189
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=24.35 E-value=1.3e+02 Score=21.21 Aligned_cols=32 Identities=3% Similarity=0.078 Sum_probs=22.3
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCe
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPM 42 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i 42 (109)
+...++|.++++++++.+.++.|..=++ +.||
T Consensus 63 ~~~~~~lp~~~s~~ell~~i~~lN~D~~-v~GI 94 (281)
T 2c2x_A 63 TSIRRDLPADISTATLNETIDELNANPD-CTGY 94 (281)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHCTT-CCEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCCCC-CCEE
Confidence 3456789999999888777776666543 5453
No 190
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=24.28 E-value=1.1e+02 Score=18.85 Aligned_cols=53 Identities=8% Similarity=0.087 Sum_probs=34.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 13 LAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 13 lf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
.-.|..+++++++.++.+ .+. +.++.+-++. .+++.|| -+++|++.++.+.-.
T Consensus 51 V~nLp~~~te~dL~~~F~-------~~G-i~~v~i~~d~--~g~srGf---aFV~F~~~e~A~~Al 103 (139)
T 2hgn_A 51 MRGLPYKATENDIYNFFS-------PLN-PVRVHIEIGP--DGRVTGE---ADVEFATHEEAVAAM 103 (139)
T ss_dssp CCSCCTTCCHHHHHHHHC-------SCC-CSEEECCCSS--SSCSSCC---CEEECSHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHH-------hcC-CeEEEEEECC--CCCCceE---EEEEeCCHHHHHHHH
Confidence 346777888877766643 233 5566665553 3566777 356899988877654
No 191
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=24.13 E-value=1.3e+02 Score=18.60 Aligned_cols=56 Identities=21% Similarity=0.317 Sum_probs=36.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCC--CeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIE--PMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip--~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
-|..-.|...++++++.++... +. .|.++.+-.+-.. +++.|| -+++|.+.++.+.
T Consensus 57 ~lfVgnLp~~~te~~L~~~F~~-------~G~i~v~~v~i~~d~~t-g~skGf---aFV~f~~~~~A~~ 114 (156)
T 3n9u_C 57 AVYVGSFSWWTTDQQLIQVIRS-------IGVYDVVELKFAENRAN-GQSKGY---AEVVVASENSVHK 114 (156)
T ss_dssp EEEEECCCTTCCHHHHHHHHHH-------TTCCCEEEEEEEECTTT-CCEEEE---EEEEESCHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHH-------HCCccEEEEEEEecCCC-CccceE---EEEEECCHHHHHH
Confidence 4566688888898887666542 33 5888887776432 345555 4467888877654
No 192
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.05 E-value=1e+02 Score=17.30 Aligned_cols=57 Identities=11% Similarity=0.198 Sum_probs=36.7
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
+-+..-.|...++++++.++.. ....|.++.+-++... +...+| -+++|.+.++.+.
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~~-g~~~g~---afV~f~~~~~A~~ 72 (111)
T 1x4h_A 16 KTVFIRNLSFDSEEEALGEVLQ-------QFGDLKYVRVVLHPDT-EHSKGC---AFAQFMTQEAAQK 72 (111)
T ss_dssp CCEEEESCCTTCCHHHHHHHHH-------TTSCEEEEECCBCSSS-CCBCSE---EEEEESSHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHH-------hcCCeEEEEEEecCCC-CCCccE---EEEEECCHHHHHH
Confidence 3455557888889888766653 3456788877666432 234555 4578999887654
No 193
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=24.05 E-value=1.2e+02 Score=18.01 Aligned_cols=57 Identities=9% Similarity=0.172 Sum_probs=35.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
+..-.+.++++++++.++.+ ....|.++.+-++... +.+.|| -.++|.+.++-+.-.
T Consensus 5 l~v~nlp~~~~~~~l~~~f~-------~~G~i~~v~~~~~~~~-~~~~g~---afV~f~~~~~A~~a~ 61 (167)
T 1fxl_A 5 LIVNYLPQNMTQEEFRSLFG-------SIGEIESCKLVRDKIT-GQSLGY---GFVNYIDPKDAEKAI 61 (167)
T ss_dssp EEEESCCTTCCHHHHHHHHH-------TTSCEEEEEEEECTTT-CCEEEE---EEEEESSHHHHHHHH
T ss_pred EEEcCCCCCCCHHHHHHHHH-------hcCCeEEEEEEeCCCC-CcceeE---EEEEECCHHHHHHHH
Confidence 44556888888887765543 3556888877666422 233444 456899988766543
No 194
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=23.95 E-value=1.4e+02 Score=19.07 Aligned_cols=27 Identities=7% Similarity=0.048 Sum_probs=17.3
Q ss_pred CeEEEEEEEEeCCCC-CHHHHHHHHHHHHhh
Q 033887 6 GVVKHVLLAKFKEGT-AQDQIDQLIKDYANL 35 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~-~~~~~~~~~~~l~~L 35 (109)
+++.+| .+-++. ++++++++.+++...
T Consensus 22 MP~v~I---~~~~G~~t~eqk~~L~~~It~a 49 (161)
T 3c6v_A 22 MPRWLI---QHSPNTLTPEEKSHLAQQITQA 49 (161)
T ss_dssp CCEEEE---EECTTSSCHHHHHHHHHHHHHH
T ss_pred CCEEEE---EEcCCCCCHHHHHHHHHHHHHH
Confidence 444444 444675 999998887666443
No 195
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=23.73 E-value=1.2e+02 Score=17.96 Aligned_cols=56 Identities=7% Similarity=0.179 Sum_probs=35.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
+..-.|.++++++++.++.+ ....|.++.+-++.. +.+.|| -.++|.+.++-+.-.
T Consensus 3 l~V~nlp~~~t~~~l~~~f~-------~~G~i~~v~i~~~~~--~~~~g~---afV~f~~~~~a~~A~ 58 (166)
T 3md3_A 3 LYVGNLDKAITEDILKQYFQ-------VGGPIANIKIMIDKN--NKNVNY---AFVEYHQSHDANIAL 58 (166)
T ss_dssp EEEEEEETTCCHHHHHHHHG-------GGSCEEEEEEECCCC---CCEEE---EEEEESSHHHHHHHH
T ss_pred EEECCCCCcCCHHHHHHHHH-------hcCCeEEEEEEECCC--CCCCCE---EEEEeCCHHHHHHHH
Confidence 45567888899887765542 345577777766543 233443 456888888766543
No 196
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.42 E-value=1.1e+02 Score=17.12 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=37.9
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
+.|..-.|...++++++.++.+ ....|.++.+-++... +...|| -.++|.+.++.+.-.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~~-~~~~g~---afV~f~~~~~a~~A~ 74 (105)
T 1x5u_A 16 ATVYVGGLDEKVSEPLLWELFL-------QAGPVVNTHMPKDRVT-GQHQGY---GFVEFLSEEDADYAI 74 (105)
T ss_dssp TEEEEECCCTTCCHHHHHHHHH-------TTSCEEEEECCBCSSS-CSBCSC---EEEEESSHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-------hcCCeEEEEEEecCCC-CcCCcE---EEEEECCHHHHHHHH
Confidence 3455567888888887765543 3456778877665432 245555 457899988766543
No 197
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=23.32 E-value=1.1e+02 Score=17.44 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=38.5
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 8 VKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 8 i~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
-+-+..-.+..+++++++.++.+ ....|.++.+-++... +++.|| -.++|.+.++.+.-
T Consensus 26 ~~~l~V~nLp~~~te~~l~~~F~-------~~G~i~~v~i~~~~~~-g~~~g~---afV~F~~~~~A~~A 84 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLRGIFE-------PFGRIESIQLMMDSET-GRSKGY---GFITFSDSECAKKA 84 (108)
T ss_dssp CEEEEEECCCSSCCHHHHHHHHT-------TTSCEEEEEEEEETTT-TEEEEE---EEEEESCHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-------hcCCeEEEEEEEcCCC-CccceE---EEEEECCHHHHHHH
Confidence 35566678888999888765542 3556888887766432 233444 45789998876653
No 198
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=23.28 E-value=1.3e+02 Score=18.01 Aligned_cols=58 Identities=10% Similarity=0.240 Sum_probs=37.5
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
.+..-.+.++++++++.++.+ ....|.++.+-++... +++.|| -.++|.+.++-+.-.
T Consensus 5 ~l~v~nlp~~~~~~~l~~~f~-------~~G~i~~v~i~~~~~~-~~~~g~---afV~f~~~~~A~~a~ 62 (168)
T 1b7f_A 5 NLIVNYLPQDMTDRELYALFR-------AIGPINTCRIMRDYKT-GYSYGY---AFVDFTSEMDSQRAI 62 (168)
T ss_dssp EEEEECCCTTCCHHHHHHHHH-------TTSCEEEEECCEETTT-TEECSE---EEEEESSHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHH-------hcCCeeEEEEEEeCCC-CccceE---EEEEECCHHHHHHHH
Confidence 355567888888887665543 3456888877766432 244555 456799988776544
No 199
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=23.26 E-value=72 Score=17.11 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=17.3
Q ss_pred eCCCCCHHHHHHHHHHHHhhhh
Q 033887 16 FKEGTAQDQIDQLIKDYANLVN 37 (109)
Q Consensus 16 ~k~~~~~~~~~~~~~~l~~L~~ 37 (109)
+....+++++.++.+.++++..
T Consensus 65 ~~~~ls~~ei~~l~~yl~~~~~ 86 (89)
T 1f1f_A 65 FNGRLSPLQIEDVAAYVVDQAE 86 (89)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHhh
Confidence 3445789999999998888865
No 200
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*
Probab=23.18 E-value=2.2e+02 Score=20.60 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=29.6
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccC
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVS 52 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~ 52 (109)
.-+.+.++.+++.+++.++++.... +.+.||+.++=.+-+|
T Consensus 244 ~dl~v~lek~~t~eei~~~lk~a~~--~~lkgil~y~~~~~vS 284 (335)
T 1obf_O 244 VDLSFVAKRNTTVEEVNGILKAASE--GELKGILDYNTEPLVS 284 (335)
T ss_dssp EEEEEEESSCCCHHHHHHHHHHHHH--TTTTTTEEEECSCCCG
T ss_pred EEEEEEECCCCCHHHHHHHHHHhhh--cccCCeecccCCceEe
Confidence 4567889999999998888766543 4577888887554443
No 201
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=23.18 E-value=95 Score=16.52 Aligned_cols=58 Identities=14% Similarity=0.253 Sum_probs=36.3
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhc--CC--CeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNL--IE--PMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~--ip--~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
-+..-.+..+++++++.++........+. -| .|.++.+.++ +|| -.++|.+.++.+.-
T Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-------kg~---afV~f~~~~~a~~A 69 (87)
T 2hzc_A 8 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-------KNF---AFLEFRSVDETTQA 69 (87)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-------SSE---EEEEESSHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-------CcE---EEEEcCCHHHHHHH
Confidence 45556788899999888877655322121 11 4777766533 444 55789998876653
No 202
>1vmb_A 30S ribosomal protein S6; TM0603, structural genomics, JCSG, structure initiative, PSI, joint center for structural GENO translation; 1.70A {Thermotoga maritima} SCOP: d.58.14.1
Probab=23.05 E-value=1.5e+02 Score=18.64 Aligned_cols=39 Identities=5% Similarity=0.158 Sum_probs=27.6
Q ss_pred EEEeCCCCCHHHHHHHHHHHHhhhhcC-CC-eeE-EEeeecc
Q 033887 13 LAKFKEGTAQDQIDQLIKDYANLVNLI-EP-MKS-FQWGKNV 51 (109)
Q Consensus 13 lf~~k~~~~~~~~~~~~~~l~~L~~~i-p~-i~~-~~~G~~~ 51 (109)
+|=++|+.++++++++++.+..+-..- .| |.. -.||+-.
T Consensus 24 ~~Il~P~l~ee~v~~~ve~~~~~I~~~~GG~I~~ve~wG~R~ 65 (140)
T 1vmb_A 24 MFIIAPNVPEEERENLVERVKKIIEERVKGKIDKVERMGMRK 65 (140)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCcc
Confidence 446889999999999998887776555 65 433 3577543
No 203
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=22.94 E-value=1.6e+02 Score=18.95 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=36.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhc
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 79 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~ 79 (109)
|..-.|..+++.+++.++. .....|.++.+-++.+ +...|| ..++|++.++.+.-..
T Consensus 112 l~V~nLp~~~t~~~L~~~F-------~~~G~v~~v~i~~~~~--~~~kG~---aFVeF~~~e~A~~A~~ 168 (193)
T 2voo_A 112 VYIKGFPTDATLDDIKEWL-------EDKGQVLNIQMRRTLH--KAFKGS---IFVVFDSIESAKKFVE 168 (193)
T ss_dssp EEEECCCTTCCHHHHHHHH-------TTSCCEEEEEEEECTT--CCEEEE---EEEEESSHHHHHHHHH
T ss_pred EEecCCCCcCCHHHHHHHH-------hcCCCEEEEEEEECCC--CCcccE---EEEEECCHHHHHHHHH
Confidence 4445677777776655443 3456688888777643 234444 5689999998766443
No 204
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=22.80 E-value=1.4e+02 Score=21.77 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=22.2
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhh
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANL 35 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L 35 (109)
+|-...-+|+++++++++++++.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (350)
T 1vr6_A 10 HHHMIVVLKPGSTEEDIRKVVKLAESY 36 (350)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCCHHHHHHHHHHHHhC
Confidence 455667889999999999999888664
No 205
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=22.79 E-value=95 Score=16.35 Aligned_cols=55 Identities=9% Similarity=0.120 Sum_probs=34.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
+..-.+.+.++++++.++.. ....|.++.+-++... +.+.|| -.++|.+.++.+.
T Consensus 4 l~V~nlp~~~t~~~l~~~f~-------~~G~i~~~~i~~~~~~-~~~~g~---afV~f~~~~~a~~ 58 (83)
T 3md1_A 4 LFVGDLNVNVDDETLRNAFK-------DFPSYLSGHVMWDMQT-GSSRGY---GFVSFTSQDDAQN 58 (83)
T ss_dssp EEEECCCTTCCHHHHHHHHT-------TSTTEEEEEEEECTTT-CCEEEE---EEEEESCHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHH-------hcCCeeEEEEEEcCCC-CCccce---EEEEECCHHHHHH
Confidence 44456778888877665542 3566888877666432 233443 4568998887654
No 206
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=22.61 E-value=1.3e+02 Score=17.99 Aligned_cols=58 Identities=9% Similarity=0.142 Sum_probs=35.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
-|..-.|...++++++.++.+ ....|.++.+-++... +...|| -.++|.+.++-+.-.
T Consensus 49 ~l~V~nLp~~~te~~L~~~F~-------~~G~i~~v~i~~~~~~-g~~~G~---afV~F~~~~~A~~Ai 106 (135)
T 2lea_A 49 SLKVDNLTYRTSPDTLRRVFE-------KYGRVGDVYIPRDRYT-KESRGF---AFVRFHDKRDAEDAM 106 (135)
T ss_dssp CEEEECCCSSCHHHHHHHHHG-------GGSCCSEEECCCCSSS-SSCCSC---CEEECSCHHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHH-------hcCCEEEEEEEecCCC-CccceE---EEEEECCHHHHHHHH
Confidence 355567888888777655543 2445777776655422 345566 346899988776544
No 207
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=22.60 E-value=1.1e+02 Score=17.05 Aligned_cols=59 Identities=12% Similarity=0.240 Sum_probs=36.6
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
+-+..-.|...++++++.++.+ ... |.++.+-++....++..|| -.++|.+.++.+.-.
T Consensus 20 ~~l~V~nLp~~~t~~~l~~~F~-------~~G-i~~v~i~~~~~~~g~~~g~---afV~f~~~~~a~~Ai 78 (100)
T 2j76_E 20 YTAFLGNLPYDVTEESIKEFFR-------GLN-ISAVRLPREPSNPERLKGF---GYAEFEDLDSLLSAL 78 (100)
T ss_dssp CEEEESCCSSCCSSSHHHHHSC-------SSC-EEEEECSCCTTTTCCCCSC---EEEEECCHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-------hcC-CeEEEEEecCCcCCccCeE---EEEEECCHHHHHHHH
Confidence 3344456777777776655432 344 8888887765222456666 456899988766543
No 208
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=22.39 E-value=84 Score=16.57 Aligned_cols=21 Identities=5% Similarity=0.017 Sum_probs=16.9
Q ss_pred CCCCCHHHHHHHHHHHHhhhh
Q 033887 17 KEGTAQDQIDQLIKDYANLVN 37 (109)
Q Consensus 17 k~~~~~~~~~~~~~~l~~L~~ 37 (109)
....+++++.++.+.+.++.+
T Consensus 62 ~~~ls~~ei~~l~~yl~~~~~ 82 (85)
T 1gdv_A 62 GGRLVDEDIEDAANYVLSQSE 82 (85)
T ss_dssp TTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhh
Confidence 346789999999998888864
No 209
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=22.37 E-value=1.5e+02 Score=21.15 Aligned_cols=32 Identities=9% Similarity=0.142 Sum_probs=22.4
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCe
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPM 42 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i 42 (109)
+...++|.++++++++.+.++.|..=++ +.||
T Consensus 66 ~~~~~~lp~~~s~~ell~~I~~lN~D~~-V~GI 97 (301)
T 1a4i_A 66 KATHIKLPRTTTESEVMKYITSLNEDST-VHGF 97 (301)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHCTT-CCEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCCCC-CcEE
Confidence 4456789999999888777776666543 5554
No 210
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=22.36 E-value=1.3e+02 Score=17.66 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=36.8
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
+-+..-.|...++++++.++.. ....|.++.+-++... ++..|| -.++|.+.++-+.-
T Consensus 64 ~~l~v~nlp~~~~~~~l~~~f~-------~~G~i~~v~i~~~~~~-~~~~g~---afV~f~~~~~a~~A 121 (140)
T 2ku7_A 64 RVLYVGGLAEEVDDKVLHAAFI-------PFGDITDIQIPLDYET-EKHRGF---AFVEFELAEDAAAA 121 (140)
T ss_dssp CEEEEECCCTTCCHHHHHHHHG-------GGSCEEEEECCCCTTT-CCCCSE---EEEEESCHHHHHHH
T ss_pred cEEEEEeCCCCCCHHHHHHHHH-------hcCCEEEEEEeecCCC-CCcCcE---EEEEECCHHHHHHH
Confidence 4455567888888877765543 3455777777665331 244555 45789998876553
No 211
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=22.33 E-value=77 Score=16.78 Aligned_cols=21 Identities=19% Similarity=0.155 Sum_probs=16.8
Q ss_pred CCCCCHHHHHHHHHHHHhhhh
Q 033887 17 KEGTAQDQIDQLIKDYANLVN 37 (109)
Q Consensus 17 k~~~~~~~~~~~~~~l~~L~~ 37 (109)
....++++++++...+.++..
T Consensus 63 ~~~ls~~ei~~l~~yl~~~~~ 83 (86)
T 3ph2_B 63 KGRLTDDQIAAVAAYVLDQAE 83 (86)
T ss_dssp TTTSCHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhhh
Confidence 356789999999998888864
No 212
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=22.33 E-value=76 Score=17.04 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=17.8
Q ss_pred eCCCCCHHHHHHHHHHHHhhhh
Q 033887 16 FKEGTAQDQIDQLIKDYANLVN 37 (109)
Q Consensus 16 ~k~~~~~~~~~~~~~~l~~L~~ 37 (109)
+....+++++.++...+++|..
T Consensus 68 ~~~~ls~~ei~~l~~yl~~l~~ 89 (93)
T 3dr0_A 68 FGGRLSDADIANVAAYIADQAE 89 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 3456789999999999998875
No 213
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.17 E-value=1.1e+02 Score=16.86 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=37.9
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhh
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYV 78 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~ 78 (109)
+.+..-.|...++++++.++.. ....|.++.+-++-.. +...+| -.++|.+.++.+.-.
T Consensus 11 ~~l~V~nlp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~~-~~~~g~---afV~f~~~~~a~~A~ 69 (99)
T 2dgs_A 11 NKIFVGGIPHNCGETELREYFK-------KFGVVTEVVMIYDAEK-QRPRGF---GFITFEDEQSVDQAV 69 (99)
T ss_dssp CEEEEESCCSSCCHHHHHHHHS-------SSSCEEEEEECCCTTT-CSCCSE---EEEEESSHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-------hcCCeEEEEEEeCCCC-CCCCce---EEEEECCHHHHHHHH
Confidence 4555667888889887765543 3556888877665432 234555 456799988776543
No 214
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.12 E-value=1.1e+02 Score=16.95 Aligned_cols=57 Identities=4% Similarity=0.062 Sum_probs=36.1
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
.+..-.|...++++++.++... ....|.++.+-++.+ +...+| -.++|.+.++.+.-
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~~------~~G~v~~v~i~~~~~--g~~~g~---afV~f~~~~~a~~A 67 (104)
T 2dhg_A 11 SLFVGDLTPDVDDGMLYEFFVK------VYPSCRGGKVVLDQT--GVSKGY---GFVKFTDELEQKRA 67 (104)
T ss_dssp CEEEECCCTTCCHHHHHHHHHH------HCTTEEEEEEEECTT--CCEEEE---EEEEESCHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHH------hCCCeEEEEEEECCC--CCccce---EEEEECCHHHHHHH
Confidence 4455678888998877666442 144577777766642 234444 45689998876553
No 215
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=21.96 E-value=1.2e+02 Score=17.40 Aligned_cols=54 Identities=9% Similarity=0.129 Sum_probs=34.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
|..=.|..+++++++.++.. ....|.++.+-++-. .++|| | .++|.+.++-+.-
T Consensus 8 lfV~nLp~~~te~~L~~~F~-------~~G~v~~v~i~~d~~---~~kg~--a-fV~f~~~~~A~~A 61 (115)
T 4f25_A 8 IFIKNLDKSIDNKALYDTFS-------AFGNILSCKVVCDEN---GSKGY--G-FVHFETQEAAERA 61 (115)
T ss_dssp EEEESCCTTCCHHHHHHHHG-------GGSCEEEEEEEEETT---EEEEE--E-EEEESCHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHh-------ccCCEEEEEEeecCC---CCCce--E-EEEECCHHHHHHH
Confidence 44446888888877766543 356688888776642 23444 3 5789998876553
No 216
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=21.87 E-value=1.1e+02 Score=21.00 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=22.5
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHhh
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQLIKDYANL 35 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L 35 (109)
++|-|.+ |+|..+.++++++++.....
T Consensus 29 ~~IDhTl---L~p~~t~~~i~~lc~eA~~~ 55 (239)
T 3ngj_A 29 KYIDHTL---LKADATEEQIRKLCSEAAEY 55 (239)
T ss_dssp TTEEEEE---CCTTCCHHHHHHHHHHHHHH
T ss_pred hhcCccc---CCCCCCHHHHHHHHHHHHhc
Confidence 5788988 69999999999998766554
No 217
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.58 E-value=1.2e+02 Score=16.94 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=36.7
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
+.+..-.|...++++++.++.. ....|.++.+-++....+...+| -+++|.+.++.+.-
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~~~~~~~g~---afV~f~~~~~a~~A 74 (107)
T 2cph_A 16 SKILVRNIPFQANQREIRELFS-------TFGELKTVRLPKKMTGTGAHRGF---GFVDFITKQDAKKA 74 (107)
T ss_dssp CCEEEESCCTTCCHHHHHHHHH-------TTSCEEEEECCCCCSSSCSSCSE---EEEEESSHHHHHHH
T ss_pred CEEEEeCCCCcCCHHHHHHHHH-------ccCCeEEEEEecCCCCCCCcCce---EEEEECCHHHHHHH
Confidence 3445557888888887766543 34568888776652112244555 45789998876653
No 218
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.50 E-value=1.2e+02 Score=17.13 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=34.9
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
.|..-.|...++++++.++.. ....|.++.+-++.+ +...+| -+++|.+.++.+.
T Consensus 17 ~l~V~nlp~~~~~~~l~~~f~-------~~G~i~~~~i~~~~~--g~~~g~---afV~f~~~~~a~~ 71 (114)
T 2do0_A 17 TVFVANLDYKVGWKKLKEVFS-------MAGVVVRADILEDKD--GKSRGI---GTVTFEQSIEAVQ 71 (114)
T ss_dssp CEEEESCCTTCCHHHHHHHHT-------TTSCEEEEEEEECTT--CSEEEE---EEEEESSHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHH-------hcCCeEEEEEEECCC--CCeeeE---EEEEECCHHHHHH
Confidence 455567888888887765543 345677777766542 233443 4568999876654
No 219
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A
Probab=21.44 E-value=91 Score=21.34 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=22.6
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHhh
Q 033887 6 GVVKHVLLAKFKEGTAQDQIDQLIKDYANL 35 (109)
Q Consensus 6 ~mi~HiVlf~~k~~~~~~~~~~~~~~l~~L 35 (109)
++|-|.+ |+|..+.++++++++.....
T Consensus 15 ~~IDhTl---L~p~~t~~~i~~lc~eA~~~ 41 (231)
T 3ndo_A 15 ALVDHTL---LKPEATPSDVTALVDEAADL 41 (231)
T ss_dssp TTEEEEC---CCTTCCHHHHHHHHHHHHHH
T ss_pred HhcCccc---CCCCCCHHHHHHHHHHHHHh
Confidence 5788988 78999999999998776654
No 220
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.29 E-value=1.3e+02 Score=17.21 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=37.7
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHhhc
Q 033887 10 HVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEYVA 79 (109)
Q Consensus 10 HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y~~ 79 (109)
-|..-.|...++++++.++.. ....|..+.+-++... +...|| -+++|.+.++.+.-..
T Consensus 29 ~l~V~nLp~~~te~~l~~~F~-------~~G~i~~v~i~~~~~~-g~~~g~---afV~f~~~~~a~~Ai~ 87 (116)
T 1x4b_A 29 KLFIGGLSFETTEESLRNYYE-------QWGKLTDCVVMRDPAS-KRSRGF---GFVTFSSMAEVDAAMA 87 (116)
T ss_dssp EEEEECCTTCCCHHHHHHHHT-------SSCCCSEEEEECCTTT-SSCCSE---EEEECSSHHHHHHHHT
T ss_pred EEEEeCCCCCCCHHHHHHHHH-------hcCCEEEEEEEECCCC-CCcCce---EEEEeCCHHHHHHHHH
Confidence 455567888888877655542 3555777777665431 244555 4578999988766554
No 221
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=21.12 E-value=1.3e+02 Score=17.38 Aligned_cols=25 Identities=16% Similarity=0.413 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHhhhhcCCCeeEEEeee
Q 033887 21 AQDQIDQLIKDYANLVNLIEPMKSFQWGK 49 (109)
Q Consensus 21 ~~~~~~~~~~~l~~L~~~ip~i~~~~~G~ 49 (109)
++.+++.+.. .|. ..|||.+.+|..
T Consensus 63 ~~~~Le~iv~---rLs-~ep~V~~a~W~~ 87 (94)
T 2lqj_A 63 TPAKLERLVA---ELS-LQPGVYAVHWYA 87 (94)
T ss_dssp CHHHHHHHHH---HHH-HSTTEEEEEEEE
T ss_pred CHHHHHHHHH---HHh-CCCCeEEEEEEe
Confidence 4566666655 444 368999998875
No 222
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=20.85 E-value=1.3e+02 Score=17.36 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=36.4
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
.-+..-.+...++++++.++.. ....|.++.+-++. .+...|| -.++|.+.++.+.
T Consensus 36 ~~l~V~nlp~~~t~~~l~~~F~-------~~G~v~~v~i~~~~--~g~~~g~---afV~f~~~~~A~~ 91 (124)
T 2kt5_A 36 AKLLVSNLDFGVSDADIQELFA-------EFGTLKKAAVDYDR--SGRSLGT---ADVHFERRADALK 91 (124)
T ss_dssp EEEEEESCCSSCCHHHHHHHHH-------TTSCCSEEEEECCS--SSSCCSE---EEEEESSHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-------hcCCeeEEEEEECC--CCCEeeE---EEEEECCHHHHHH
Confidence 3455567888888887766543 34557777776665 2345555 4578999887654
No 223
>3bv4_A Fructose-bisphosphate aldolase A; lyase, acetylation, glycolysis, phosphoprotein, schiff base; HET: 13P; 1.70A {Oryctolagus cuniculus} PDB: 1ado_A* 1ewd_A 1zai_A* 1zah_A* 1zaj_A* 1zal_A 2ot0_A 2ot1_A* 2qut_A 2quv_A 3lge_A 3tu9_A* 3b8d_A 6ald_A* 1ex5_A 1ewe_A 2quu_A 3dfn_A 3dfo_A 3dfp_A ...
Probab=20.75 E-value=99 Score=22.64 Aligned_cols=18 Identities=6% Similarity=0.100 Sum_probs=11.3
Q ss_pred HhhhhcCCCeeEEEeeec
Q 033887 33 ANLVNLIEPMKSFQWGKN 50 (109)
Q Consensus 33 ~~L~~~ip~i~~~~~G~~ 50 (109)
++.+..+|||..++.|..
T Consensus 255 rtvP~aVpgI~fLSGGqS 272 (341)
T 3bv4_A 255 RTVPPAVTGVTFLSGGQS 272 (341)
T ss_dssp TTSCTTSCEEEECCTTCC
T ss_pred hcCCcccCeeeecCCCCC
Confidence 344555677777777765
No 224
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=20.67 E-value=1.7e+02 Score=18.50 Aligned_cols=56 Identities=16% Similarity=0.260 Sum_probs=37.3
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
.-|..-.|..+++++++.++... +..|.++.+-.+.+ +...|| -+++|.+.++.+.
T Consensus 89 ~~l~V~nLp~~~te~~L~~~F~~-------~G~I~~v~i~~d~~--g~~kG~---afV~F~~~~~A~~ 144 (177)
T 2f3j_A 89 AKLLVSNLDFGVSDADIQELFAE-------FGTLKKAAVDYDRS--GRSLGT---ADVHFERRADALK 144 (177)
T ss_dssp EEEEEECCCSCCCHHHHHHHHHH-------TSCCSEEEECCCTT--SSCSCC---EEEEESCHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-------cCCeEEEEEEECCC--CCEeeE---EEEEeCCHHHHHH
Confidence 45666688889998887766543 34567777766542 345665 4578999886554
No 225
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.65 E-value=1.2e+02 Score=16.76 Aligned_cols=56 Identities=13% Similarity=0.247 Sum_probs=34.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHHh
Q 033887 11 VLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAEY 77 (109)
Q Consensus 11 iVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~Y 77 (109)
+..-.+...++++++.++.+ ....|.++.+-++-.. +.+.|| -.++|.+.++-+.-
T Consensus 11 l~V~nlp~~~~~~~l~~~f~-------~~G~i~~~~i~~~~~~-g~~~g~---afV~f~~~~~a~~A 66 (104)
T 1p1t_A 11 VFVGNIPYEATEEQLKDIFS-------EVGPVVSFRLVYDRET-GKPKGY---GFCEYQDQETALSA 66 (104)
T ss_dssp EEEESCCTTSCHHHHHHHHH-------TTSCCSEEEEEEETTT-TEEEEE---EEEECSCHHHHHHH
T ss_pred EEEeCCCCcCCHHHHHHHHH-------hcCCeeEEEEEeCCCC-CccceE---EEEEECCHHHHHHH
Confidence 44456777888877765543 3445777777666431 233444 45689998876543
No 226
>3zrg_A Pexrd2, pexrd2 family secreted RXLR effector peptide, PUT; protein binding, plant pathogen interactions; 1.75A {Phytophthora infestans}
Probab=20.61 E-value=1.2e+02 Score=16.85 Aligned_cols=21 Identities=5% Similarity=-0.005 Sum_probs=17.9
Q ss_pred CHHhHHHhhcChhHHHHHHHH
Q 033887 70 STEGVAEYVAHPAHVEYANLF 90 (109)
Q Consensus 70 s~e~l~~Y~~hp~H~~~~~~~ 90 (109)
|..+|+.|...|+++....++
T Consensus 38 s~~~L~~~mqT~eY~Ky~~Yl 58 (67)
T 3zrg_A 38 SARAMEKLGETLKMKKLLRYL 58 (67)
T ss_dssp CHHHHHHHHTCHHHHHHHHHH
T ss_pred ChHHHHHHhcCHHHHHHHHHH
Confidence 678999999999999887654
No 227
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=20.55 E-value=1.2e+02 Score=17.41 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=20.4
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeE
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKS 44 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~ 44 (109)
.|.++ ++++.+++++...--.+++|-|..
T Consensus 19 kH~vL-------s~eE~~~ll~~y~i~~~qLP~I~~ 47 (84)
T 4ayb_H 19 KHEVL-------SIDEAYKILKELGIRPEQLPWIRA 47 (84)
T ss_dssp EEEEC-------CHHHHHHHHHHHTCCGGGSCCEES
T ss_pred CeEEC-------CHHHHHHHHHHhcCCHhHCCeecc
Confidence 56665 678888988877554556777754
No 228
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=20.55 E-value=1.3e+02 Score=16.96 Aligned_cols=57 Identities=11% Similarity=0.202 Sum_probs=35.4
Q ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCeeEEEeeeccCccccCCCccEEEEEEECCHHhHHH
Q 033887 9 KHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPMKSFQWGKNVSIENLHQGFTHIFESTFESTEGVAE 76 (109)
Q Consensus 9 ~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~e~l~~ 76 (109)
+-+..-.|...++++++.++.+ ....|.++.+-++-.. +...|| -.++|.+.++.+.
T Consensus 27 ~~l~V~nlp~~~t~~~l~~~F~-------~~G~i~~v~i~~~~~~-~~~~g~---afV~f~~~~~A~~ 83 (110)
T 1oo0_B 27 WILFVTSIHEEAQEDEIQEKFC-------DYGEIKNIHLNLDRRT-GFSKGY---ALVEYETHKQALA 83 (110)
T ss_dssp EEEEEESCCTTCCHHHHHHHHG-------GGSCEEEEECCBCTTT-SSBCSE---EEEEESSHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-------hcCCEEEEEEEecCCC-CCcceE---EEEEECCHHHHHH
Confidence 3355557888888877655543 3456888877655432 234554 4468998887654
No 229
>3mbd_A Fructose-bisphosphate aldolase; glycolysis, lyase, schiff base; 2.00A {Encephalitozoon cuniculi} PDB: 3mbf_A* 3qrh_A
Probab=20.49 E-value=95 Score=22.72 Aligned_cols=68 Identities=9% Similarity=0.131 Sum_probs=35.1
Q ss_pred CCHHHHHHH-HHHH-HhhhhcCCCeeEEEeeeccC----------ccccCCCccEEEEEEEC-CHHhHHHhhcChhHHHH
Q 033887 20 TAQDQIDQL-IKDY-ANLVNLIEPMKSFQWGKNVS----------IENLHQGFTHIFESTFE-STEGVAEYVAHPAHVEY 86 (109)
Q Consensus 20 ~~~~~~~~~-~~~l-~~L~~~ip~i~~~~~G~~~~----------~~~~~~~~~~~~~~~F~-s~e~l~~Y~~hp~H~~~ 86 (109)
.+++++... +..| ++.+..+|||..++.|.... .-...+.|..-|.---+ -..+|++|...++..+.
T Consensus 239 ~s~eeVA~~Tv~~L~rtVP~avpGI~FLSGGqSeeeAt~nLnAmN~~~~~~PW~LsFSygRALQ~s~LkaW~Gk~env~a 318 (342)
T 3mbd_A 239 YTPKKVATFTLRALLSTIPCGIPGIVFLSGGHGSEDAIGFLNAINMERGCRTWSLSFSFARALTDGVLETWRGDDSNIEE 318 (342)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTCCEEEECCTTSCHHHHHHHHHHHHHCCCCCSSEEEEEESHHHHHHHHHHHTTCGGGHHH
T ss_pred CCHHHHHHHHHHHHHhcCCcccCcceecCCCCCHHHHHHHHHHHhcCCCCCCeeEEEecchhhhhHHHHHhcCCcccHHH
Confidence 356665333 3333 46666788888888886631 00112456443322111 23567777776665443
Q ss_pred H
Q 033887 87 A 87 (109)
Q Consensus 87 ~ 87 (109)
.
T Consensus 319 a 319 (342)
T 3mbd_A 319 A 319 (342)
T ss_dssp H
T ss_pred H
Confidence 3
No 230
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=20.20 E-value=1.6e+02 Score=17.99 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=20.5
Q ss_pred eEEEEEEEEeCCCCCHHHHHHHHHHHHhhhhcCCCe
Q 033887 7 VVKHVLLAKFKEGTAQDQIDQLIKDYANLVNLIEPM 42 (109)
Q Consensus 7 mi~HiVlf~~k~~~~~~~~~~~~~~l~~L~~~ip~i 42 (109)
.+.+|.+ -++.+.|+.+++.+.+.... ...|+
T Consensus 66 v~I~I~~---~~gRt~EqK~~L~~~it~~l-~~lg~ 97 (136)
T 3mlc_A 66 VIIHVFT---QAGRTIETKQRVFAAITESL-APIGV 97 (136)
T ss_dssp EEEEEEE---ETTCCHHHHHHHHHHHHHHH-TTTTC
T ss_pred EEEEEEE---CCCCCHHHHHHHHHHHHHHH-HHcCC
Confidence 3444444 35779999999987776555 45444
Done!