BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033888
MASSSTPSSAGSTAQNPKRSLGFIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHDL
QEDTSALKEEQESLTNRMNNIKHSLLHEASLEPTGLFASRLRHLFGEES

High Scoring Gene Products

Symbol, full name Information P value
AT1G20430 protein from Arabidopsis thaliana 1.9e-26

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033888
        (109 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2034387 - symbol:AT1G20430 "AT1G20430" species...   298  1.9e-26   1


>TAIR|locus:2034387 [details] [associations]
            symbol:AT1G20430 "AT1G20430" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0005739 "mitochondrion" evidence=IDA]
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 EMBL:AY042844
            EMBL:AY072484 IPI:IPI00536621 RefSeq:NP_564113.1 UniGene:At.26156
            STRING:Q94B54 PaxDb:Q94B54 PRIDE:Q94B54 EnsemblPlants:AT1G20430.1
            GeneID:838631 KEGG:ath:AT1G20430 TAIR:At1g20430 eggNOG:NOG302177
            HOGENOM:HOG000241753 InParanoid:Q94B54 OMA:QKYRIHD PhylomeDB:Q94B54
            ProtClustDB:CLSN2687881 Genevestigator:Q94B54 Uniprot:Q94B54
        Length = 116

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 58/87 (66%), Positives = 72/87 (82%)

Query:    22 GFIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNI 81
             GF  N KK+K SF Q  AMTGILLLS RS+ QKYRIHDL+EDT+ LK+EQ+SLT+RM+ I
Sbjct:    28 GFFENVKKNKQSFFQFAAMTGILLLSFRSVSQKYRIHDLEEDTAVLKKEQDSLTDRMSKI 87

Query:    82 KHSLLHEASLEPTGLFASRLRHLFGEE 108
             K  LLH+AS++ +G+FASRLR LFGE+
Sbjct:    88 KSDLLHQASIDSSGVFASRLRLLFGED 114


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.131   0.360    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      109        96   0.00091  102 3  11 22  0.36    30
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  454 (48 KB)
  Total size of DFA:  86 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.56u 0.08s 12.64t   Elapsed:  00:00:01
  Total cpu time:  12.56u 0.08s 12.64t   Elapsed:  00:00:01
  Start:  Fri May 10 07:20:49 2013   End:  Fri May 10 07:20:50 2013

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