Query 033888
Match_columns 109
No_of_seqs 27 out of 29
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 12:19:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dgc_A Protein (GCN4); basic d 91.5 0.19 6.5E-06 31.9 3.4 32 54-85 29-60 (63)
2 1t2k_D Cyclic-AMP-dependent tr 89.6 0.56 1.9E-05 28.9 4.4 33 54-86 21-53 (61)
3 1dh3_A Transcription factor CR 89.5 0.29 9.8E-06 30.3 2.9 32 54-85 21-52 (55)
4 2wt7_A Proto-oncogene protein 89.4 0.59 2E-05 29.2 4.4 33 54-86 22-54 (63)
5 1jnm_A Proto-oncogene C-JUN; B 88.6 0.72 2.5E-05 28.6 4.4 34 53-86 20-53 (62)
6 2yy0_A C-MYC-binding protein; 88.3 0.75 2.6E-05 28.5 4.3 33 54-86 18-50 (53)
7 1t2k_D Cyclic-AMP-dependent tr 88.1 0.77 2.6E-05 28.3 4.2 34 54-87 28-61 (61)
8 1ci6_A Transcription factor AT 87.1 1 3.4E-05 28.3 4.4 32 54-85 22-53 (63)
9 4dzn_A Coiled-coil peptide CC- 84.1 1.8 6.3E-05 24.9 4.1 30 56-85 3-32 (33)
10 3lay_A Zinc resistance-associa 80.6 2.2 7.4E-05 31.8 4.5 70 21-93 18-109 (175)
11 2zqm_A Prefoldin beta subunit 80.4 3.3 0.00011 27.1 4.9 38 54-91 76-113 (117)
12 3rvy_A ION transport protein; 78.4 1.2 4E-05 33.1 2.4 53 34-86 216-280 (285)
13 1t6f_A Geminin; coiled-coil, c 75.2 2.4 8.3E-05 25.2 2.7 21 55-75 14-34 (37)
14 3ra3_A P1C; coiled coil domain 75.2 2.8 9.6E-05 23.4 2.8 27 56-82 1-27 (28)
15 2wt7_A Proto-oncogene protein 73.9 6.2 0.00021 24.4 4.6 33 54-86 29-61 (63)
16 1hjb_A Ccaat/enhancer binding 71.8 6.2 0.00021 26.6 4.5 34 54-87 42-75 (87)
17 2jee_A YIIU; FTSZ, septum, coi 71.8 6 0.0002 26.7 4.4 20 54-73 26-45 (81)
18 1fxk_A Prefoldin; archaeal pro 71.5 6.7 0.00023 25.2 4.5 34 54-87 71-104 (107)
19 1jnm_A Proto-oncogene C-JUN; B 71.3 2.7 9.1E-05 25.9 2.4 34 54-87 28-61 (62)
20 2wuj_A Septum site-determining 70.6 3.3 0.00011 25.5 2.7 29 57-85 29-57 (57)
21 4etp_A Kinesin-like protein KA 69.5 5.8 0.0002 32.2 4.6 36 54-89 9-44 (403)
22 3m91_A Proteasome-associated A 68.4 9 0.00031 23.6 4.3 34 54-87 8-41 (51)
23 1ci6_A Transcription factor AT 67.3 10 0.00036 23.5 4.6 33 54-86 29-61 (63)
24 2oa5_A Hypothetical protein BQ 67.1 2.5 8.7E-05 30.1 1.8 25 55-79 8-32 (110)
25 1nkp_B MAX protein, MYC proto- 65.9 9.5 0.00033 24.2 4.3 24 55-78 54-77 (83)
26 1gu4_A CAAT/enhancer binding p 65.2 10 0.00035 24.9 4.4 29 57-85 38-66 (78)
27 2yy0_A C-MYC-binding protein; 64.3 7 0.00024 24.0 3.2 24 62-85 19-42 (53)
28 1hjb_A Ccaat/enhancer binding 64.2 11 0.00036 25.4 4.4 34 54-87 35-68 (87)
29 2lw1_A ABC transporter ATP-bin 62.8 5.4 0.00018 25.9 2.7 30 50-79 17-46 (89)
30 1p9i_A Cortexillin I/GCN4 hybr 62.3 9.9 0.00034 21.6 3.3 24 58-81 2-25 (31)
31 1gu4_A CAAT/enhancer binding p 62.0 6.5 0.00022 25.9 2.9 36 52-87 40-75 (78)
32 1nkp_B MAX protein, MYC proto- 61.9 6.2 0.00021 25.1 2.8 32 56-87 48-79 (83)
33 1nkp_A C-MYC, MYC proto-oncoge 61.1 7.4 0.00025 25.6 3.1 28 55-82 59-86 (88)
34 1gd2_E Transcription factor PA 58.7 9.6 0.00033 24.7 3.3 29 57-85 38-66 (70)
35 2wt7_B Transcription factor MA 58.7 15 0.00051 25.0 4.4 31 57-87 57-87 (90)
36 1nlw_A MAD protein, MAX dimeri 58.5 15 0.00052 23.8 4.3 40 20-78 38-77 (80)
37 2zvf_A Alanyl-tRNA synthetase; 57.0 16 0.00054 25.2 4.4 35 55-89 32-67 (171)
38 2y7c_A Type-1 restriction enzy 56.4 15 0.0005 27.7 4.4 39 52-90 376-418 (464)
39 1am9_A Srebp-1A, protein (ster 54.3 18 0.0006 23.3 4.0 27 55-81 50-76 (82)
40 2xdj_A Uncharacterized protein 54.1 24 0.00081 23.4 4.7 32 52-83 24-55 (83)
41 2z5i_A TM, general control pro 53.8 16 0.00056 22.2 3.6 27 54-80 18-44 (52)
42 1uii_A Geminin; human, DNA rep 53.1 17 0.00058 24.7 3.9 23 56-78 54-76 (83)
43 1nlw_A MAD protein, MAX dimeri 52.7 13 0.00045 24.0 3.2 32 55-86 47-78 (80)
44 1a93_B MAX protein, coiled coi 52.6 17 0.00058 21.1 3.3 23 56-78 8-30 (34)
45 3s9g_A Protein hexim1; cyclin 52.2 14 0.00047 26.2 3.4 30 54-83 64-93 (104)
46 1gd2_E Transcription factor PA 51.6 15 0.00052 23.7 3.3 34 54-87 28-61 (70)
47 2v66_B Nuclear distribution pr 51.5 20 0.00068 25.2 4.2 29 56-84 36-64 (111)
48 3u06_A Protein claret segregat 51.2 18 0.00062 29.6 4.5 34 55-88 10-43 (412)
49 3e98_A GAF domain of unknown f 51.0 12 0.00041 28.5 3.2 55 53-107 77-135 (252)
50 2oxj_A Hybrid alpha/beta pepti 50.6 31 0.001 20.1 4.2 28 56-83 2-29 (34)
51 3zwh_Q Myosin-9; Ca-binding pr 49.0 13 0.00046 22.5 2.6 27 53-79 4-30 (45)
52 2jee_A YIIU; FTSZ, septum, coi 47.3 42 0.0014 22.5 5.1 19 65-83 51-69 (81)
53 1go4_E MAD1 (mitotic arrest de 47.1 27 0.00093 24.1 4.3 32 56-87 13-44 (100)
54 1yf2_A Type I restriction-modi 46.8 26 0.00091 25.8 4.4 40 51-90 168-207 (425)
55 3mtu_E Head morphogenesis prot 46.6 31 0.0011 23.0 4.4 26 54-79 43-68 (77)
56 1ydx_A Type I restriction enzy 46.1 27 0.00091 26.4 4.4 42 50-91 165-206 (406)
57 1bb1_A Designed, thermostable 46.0 35 0.0012 19.8 3.9 30 56-85 3-32 (36)
58 3s4r_A Vimentin; alpha-helix, 45.5 27 0.00093 23.2 4.0 24 59-82 67-90 (93)
59 2w6b_A RHO guanine nucleotide 44.5 33 0.0011 21.9 4.0 26 58-83 13-38 (56)
60 1dip_A Delta-sleep-inducing pe 44.4 17 0.00056 24.6 2.7 23 54-76 21-43 (78)
61 2oqq_A Transcription factor HY 43.2 41 0.0014 20.3 4.1 29 55-83 3-31 (42)
62 3m48_A General control protein 43.0 39 0.0013 19.5 3.8 28 56-83 1-28 (33)
63 3twe_A Alpha4H; unknown functi 42.8 36 0.0012 18.7 3.4 22 65-86 4-25 (27)
64 3he5_A Synzip1; heterodimeric 42.3 38 0.0013 20.8 3.9 24 57-80 5-28 (49)
65 2wg5_A General control protein 41.2 22 0.00076 24.0 3.0 29 54-82 6-34 (109)
66 3m9b_A Proteasome-associated A 40.7 32 0.0011 27.2 4.3 39 54-92 60-98 (251)
67 1ydx_A Type I restriction enzy 40.6 36 0.0012 25.6 4.4 43 50-92 353-395 (406)
68 3ni0_A Bone marrow stromal ant 40.2 35 0.0012 23.9 3.9 37 39-75 51-87 (99)
69 3w03_C DNA repair protein XRCC 40.2 35 0.0012 25.7 4.3 30 56-85 153-182 (184)
70 1wlq_A Geminin; coiled-coil; 2 39.5 17 0.00058 24.7 2.2 21 56-76 46-66 (83)
71 3mud_A DNA repair protein XRCC 39.3 64 0.0022 24.3 5.6 36 44-79 130-166 (175)
72 3q4f_C DNA repair protein XRCC 38.7 19 0.00065 27.6 2.6 20 56-75 162-181 (186)
73 2y7c_A Type-1 restriction enzy 38.6 40 0.0014 25.3 4.4 41 51-91 162-206 (464)
74 3l4f_A RHO guanine nucleotide 38.4 45 0.0015 21.4 4.0 26 59-84 11-36 (61)
75 1deb_A APC protein, adenomatou 38.3 52 0.0018 20.8 4.2 28 55-82 10-37 (54)
76 3tnu_A Keratin, type I cytoske 37.9 47 0.0016 22.7 4.4 32 54-85 44-75 (131)
77 2ve7_C Kinetochore protein NUF 37.4 25 0.00086 26.9 3.1 33 55-87 148-180 (250)
78 1yf2_A Type I restriction-modi 36.1 49 0.0017 24.3 4.4 40 51-90 378-417 (425)
79 3tnu_B Keratin, type II cytosk 35.8 51 0.0017 22.5 4.2 31 54-84 42-72 (129)
80 1zme_C Proline utilization tra 35.2 31 0.0011 20.2 2.7 23 55-77 44-66 (70)
81 2wvr_A Geminin; DNA replicatio 33.8 42 0.0014 26.2 3.9 20 57-76 124-143 (209)
82 3swk_A Vimentin; cytoskeleton, 33.7 75 0.0026 20.7 4.6 36 54-89 6-41 (86)
83 1go4_E MAD1 (mitotic arrest de 33.6 37 0.0013 23.4 3.2 27 54-80 18-44 (100)
84 2aze_B Transcription factor E2 33.4 66 0.0023 21.8 4.4 34 56-89 7-40 (106)
85 2zvf_A Alanyl-tRNA synthetase; 32.9 60 0.0021 22.2 4.2 31 58-88 28-58 (171)
86 1nkp_A C-MYC, MYC proto-oncoge 32.3 69 0.0024 20.8 4.3 31 56-86 53-83 (88)
87 3rrk_A V-type ATPase 116 kDa s 32.1 60 0.0021 24.7 4.5 34 55-88 233-270 (357)
88 2zxx_A Geminin; coiled-coil, c 31.9 39 0.0013 22.6 3.0 22 56-77 42-63 (79)
89 1ik9_A DNA repair protein XRCC 31.9 56 0.0019 24.6 4.2 13 77-89 190-202 (213)
90 3oja_B Anopheles plasmodium-re 31.5 62 0.0021 25.9 4.6 30 56-85 531-560 (597)
91 3m9b_A Proteasome-associated A 30.9 36 0.0012 27.0 3.1 33 55-87 54-86 (251)
92 4dzo_A Mitotic spindle assembl 30.8 71 0.0024 22.2 4.3 35 54-89 3-37 (123)
93 3hnw_A Uncharacterized protein 29.8 74 0.0025 22.4 4.4 13 33-45 54-66 (138)
94 4etp_A Kinesin-like protein KA 29.2 56 0.0019 26.4 4.1 32 56-87 4-35 (403)
95 2wt7_B Transcription factor MA 28.9 82 0.0028 21.3 4.3 28 57-84 50-77 (90)
96 2v71_A Nuclear distribution pr 28.8 66 0.0023 24.3 4.2 28 56-83 89-116 (189)
97 3okg_A Restriction endonucleas 28.6 38 0.0013 25.1 2.8 31 60-90 378-408 (412)
98 3mtu_A Tropomyosin alpha-1 cha 28.6 1.2E+02 0.004 19.4 5.8 49 54-104 8-63 (75)
99 2jva_A Peptidyl-tRNA hydrolase 28.2 21 0.00073 24.6 1.2 13 8-20 21-33 (108)
100 3cve_A Homer protein homolog 1 28.0 83 0.0028 20.5 4.0 23 57-79 9-31 (72)
101 1fxk_C Protein (prefoldin); ar 27.7 91 0.0031 20.7 4.4 34 54-87 94-127 (133)
102 2v6x_B DOA4-independent degrad 27.2 16 0.00055 22.6 0.4 15 56-70 39-53 (54)
103 3efg_A Protein SLYX homolog; x 26.9 1E+02 0.0035 19.9 4.3 42 46-87 19-60 (78)
104 3a7o_A Autophagy protein 16; c 26.5 46 0.0016 22.3 2.6 30 55-84 46-75 (75)
105 1a93_A Coiled coil, LZ, MYC pr 25.6 86 0.0029 17.9 3.3 23 58-80 10-32 (34)
106 3mq7_A Bone marrow stromal ant 25.3 61 0.0021 23.4 3.2 32 54-85 70-101 (121)
107 3mq9_A Bone marrow stromal ant 25.3 71 0.0024 25.0 3.9 30 53-82 441-470 (471)
108 3c3g_A Alpha/beta peptide with 24.9 1.1E+02 0.0036 17.6 4.2 28 56-83 1-28 (33)
109 3gp4_A Transcriptional regulat 24.6 86 0.0029 21.5 3.8 31 55-85 88-118 (142)
110 3oja_B Anopheles plasmodium-re 24.6 84 0.0029 25.1 4.3 31 54-84 536-566 (597)
111 3ol1_A Vimentin; structural ge 24.2 1.3E+02 0.0044 20.4 4.6 35 54-88 26-60 (119)
112 3he4_B Synzip5; heterodimeric 24.1 1.2E+02 0.0043 18.2 4.4 24 53-76 8-31 (46)
113 3gpv_A Transcriptional regulat 23.8 71 0.0024 22.0 3.3 29 56-84 103-131 (148)
114 4b4t_K 26S protease regulatory 23.8 94 0.0032 25.3 4.5 32 54-85 48-79 (428)
115 1ykh_B RNA polymerase II holoe 23.7 1.1E+02 0.0037 21.3 4.3 31 51-81 88-118 (132)
116 1wt6_A Myotonin-protein kinase 23.6 1E+02 0.0035 20.7 3.9 29 54-82 44-72 (81)
117 3oja_A Leucine-rich immune mol 23.6 96 0.0033 24.4 4.4 28 54-81 441-468 (487)
118 2jn6_A Protein CGL2762, transp 22.8 3.4 0.00012 25.9 -3.5 12 32-43 24-35 (97)
119 1jy2_N Fibrinogen alpha chain; 22.1 81 0.0028 19.8 3.0 21 67-87 30-50 (53)
120 3iyn_Q Protein IX, PIX, hexon- 22.0 85 0.0029 23.1 3.5 39 49-87 92-130 (140)
121 1uo4_A General control protein 21.3 1.3E+02 0.0044 17.4 3.8 28 56-83 2-29 (34)
122 1hlo_A Protein (transcription 21.3 59 0.002 20.4 2.3 18 57-74 59-76 (80)
123 3a7p_A Autophagy protein 16; c 21.2 1.2E+02 0.0039 22.5 4.1 21 55-75 68-88 (152)
124 1yke_B RNA polymerase II holoe 21.1 1.3E+02 0.0043 21.6 4.3 31 51-81 88-118 (151)
125 3c3f_A Alpha/beta peptide with 21.1 1.3E+02 0.0045 17.3 4.2 28 56-83 2-29 (34)
126 1kd8_A GABH AIV, GCN4 acid bas 21.0 1.4E+02 0.0046 17.5 4.0 30 56-85 2-31 (36)
127 3vem_A Helicase protein MOM1; 20.8 1.4E+02 0.0047 21.2 4.3 32 58-89 35-66 (115)
128 4akg_A Glutathione S-transfera 20.6 1.1E+02 0.0036 31.1 4.8 39 54-92 2138-2177(2695)
129 1l8d_A DNA double-strand break 20.3 1.6E+02 0.0056 18.8 4.4 23 59-81 75-97 (112)
130 1s1c_X RHO-associated, coiled- 20.2 1.5E+02 0.005 19.3 4.0 28 59-86 3-30 (71)
131 4f43_A Protelomerase; recombin 20.1 88 0.003 25.7 3.6 55 48-107 216-270 (320)
No 1
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=91.47 E-value=0.19 Score=31.89 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=28.8
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
|.++++|+.+...|..+|..|...+..|+++|
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999876
No 2
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=89.59 E-value=0.56 Score=28.90 Aligned_cols=33 Identities=12% Similarity=0.271 Sum_probs=24.4
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
|.+++.|+.+...|..+|..|...+..+++++.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888777777776653
No 3
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=89.54 E-value=0.29 Score=30.30 Aligned_cols=32 Identities=16% Similarity=0.354 Sum_probs=28.1
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
|.++++|+.+...|..||..|...+..+++.+
T Consensus 21 k~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 21 KEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999999999998887653
No 4
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=89.35 E-value=0.59 Score=29.19 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=27.5
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
|.++..|+.+...|..+|+.|...+..+++++.
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999998888887754
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=88.60 E-value=0.72 Score=28.55 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=29.4
Q ss_pred hhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033888 53 QKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
.+.+|++|+.+...|..+|..|...+..+++++-
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999998888764
No 6
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=88.34 E-value=0.75 Score=28.45 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=28.4
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
.-++++|..|++.|+..++.|..+.-.++..|-
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999999999999988888774
No 7
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=88.13 E-value=0.77 Score=28.28 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=30.5
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
+.+++.|+.++..|+.+...|..-+..||+.|++
T Consensus 28 e~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~lla 61 (61)
T 1t2k_D 28 EKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLLA 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4568899999999999999999999999998874
No 8
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=87.09 E-value=1 Score=28.31 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=26.7
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
+-++++|+.+...|..+|..|..++..++.+.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44588899999999999999999988888765
No 9
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=84.07 E-value=1.8 Score=24.93 Aligned_cols=30 Identities=27% Similarity=0.426 Sum_probs=26.1
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033888 56 RIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
+|-+|..|.+.|++|..+|+-.+-.+||+.
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkqgy 32 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQGY 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 678889999999999999999888888864
No 10
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=80.57 E-value=2.2 Score=31.79 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=29.6
Q ss_pred hhHHHHHhhccchHHHHHHHHH-HHHHH---------------hh------ccchhhhhhhhHHhhHHHHHHhHHHHHHH
Q 033888 21 LGFIANAKKHKHSFIQLFAMTG-ILLLS---------------VR------SLGQKYRIHDLQEDTSALKEEQESLTNRM 78 (109)
Q Consensus 21 ~g~~a~A~k~k~~fiq~~Lmg~-~~~Ls---------------~R------Sl~Qq~~I~~L~~dkasL~~en~~l~~rM 78 (109)
+=|-++.||+...++-.++... +++.| ++ |.+||.+|++|.++ -+.+.+.++..|
T Consensus 18 ~~~~~~~Mk~~kk~~la~~al~~l~l~s~~A~A~g~~~~g~gm~~q~~LnLT~EQq~ql~~I~~e---~r~~~~~Lr~ql 94 (175)
T 3lay_A 18 LYFQSNAMKRNNKSAIALIALSLLALSSGAAFAGHHWGNNDGMWQQGGSPLTTEQQATAQKIYDD---YYTQTSALRQQL 94 (175)
T ss_dssp --------------------------------------------------CCHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCCCCCCccccccccCCHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4566788886666553333333 22221 23 35677777776544 345666788889
Q ss_pred HHHHHHHhhhhccCC
Q 033888 79 NNIKHSLLHEASLEP 93 (109)
Q Consensus 79 w~~k~~L~~EA~~ds 93 (109)
++.+++|-.+..+|+
T Consensus 95 ~akr~EL~aL~~a~~ 109 (175)
T 3lay_A 95 ISKRYEYNALLTASS 109 (175)
T ss_dssp HHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999998876654
No 11
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=80.36 E-value=3.3 Score=27.06 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=32.2
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASL 91 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~ 91 (109)
..+++.++.+...|.+.-+.+...|.+||..|..--..
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 46788889999999999999999999999998875443
No 12
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=78.38 E-value=1.2 Score=33.10 Aligned_cols=53 Identities=13% Similarity=0.308 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhh------ccchhhh------hhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033888 34 FIQLFAMTGILLLSVR------SLGQKYR------IHDLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 34 fiq~~Lmg~~~~Ls~R------Sl~Qq~~------I~~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
|+.+++++|++++++= ...++++ .++.+++.+.+.++.+.++.++.++|++|-
T Consensus 216 f~~~~~i~~~~~lnl~~aii~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~ 280 (285)
T 3rvy_A 216 FIPFIFVVTFVMINLVVAICVDAMAILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELIK 280 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577777777777541 1122111 122223445566666666666666666553
No 13
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=75.22 E-value=2.4 Score=25.20 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=18.4
Q ss_pred hhhhhhHHhhHHHHHHhHHHH
Q 033888 55 YRIHDLQEDTSALKEEQESLT 75 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~ 75 (109)
+.|+.-+++.++|++||+.|.
T Consensus 14 k~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 14 KEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 578888999999999999875
No 14
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=75.20 E-value=2.8 Score=23.40 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=17.7
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHH
Q 033888 56 RIHDLQEDTSALKEEQESLTNRMNNIK 82 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k 82 (109)
+|++|+-|++.|.+...+|+..+-.+|
T Consensus 1 eidalefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 1 EIDALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHhccHHHHHHHHHHHHHHHHhc
Confidence 366777777777766666666665554
No 15
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=73.91 E-value=6.2 Score=24.40 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=28.9
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
+.+++.|+.++..|+.+.+.|..-.-.|++-|.
T Consensus 29 e~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 29 QAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999999999998775
No 16
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=71.85 E-value=6.2 Score=26.55 Aligned_cols=34 Identities=12% Similarity=0.384 Sum_probs=24.5
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
+.+++.|+.|++.|+.+.+.|+.-+..||+-|..
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777766664
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=71.81 E-value=6 Score=26.67 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=12.9
Q ss_pred hhhhhhhHHhhHHHHHHhHH
Q 033888 54 KYRIHDLQEDTSALKEEQES 73 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~ 73 (109)
|-+|++|.+++..|..++..
T Consensus 26 qmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55777777777775554444
No 18
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=71.51 E-value=6.7 Score=25.24 Aligned_cols=34 Identities=9% Similarity=0.332 Sum_probs=28.7
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
..+++.++.+...|.+..+.+...|.+||..|.+
T Consensus 71 ~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 71 QEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888899999999999999999988764
No 19
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=71.28 E-value=2.7 Score=25.91 Aligned_cols=34 Identities=15% Similarity=0.377 Sum_probs=26.1
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
+.+++.|+.++..|..+...|..-+..+|+.|+.
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~~ 61 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVAQLKQKVMN 61 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568899999999999999999999999888763
No 20
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=70.64 E-value=3.3 Score=25.47 Aligned_cols=29 Identities=10% Similarity=0.362 Sum_probs=18.9
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033888 57 IHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
++.+.++.+.|.+||+.|+.++..++++|
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45677778888888888888887777654
No 21
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=69.46 E-value=5.8 Score=32.25 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=30.0
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhh
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEA 89 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA 89 (109)
+.+|+.|++++.+|.++.+.+...+.++++.|..|-
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE 44 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888888899999999999999988887754
No 22
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=68.35 E-value=9 Score=23.61 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=28.3
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
-+++++|+.+...|-+.|+.|..++.+=+++|-.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~ 41 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLA 41 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999988888888754
No 23
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=67.33 E-value=10 Score=23.51 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=26.9
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
..++++|+.++..|+.+.+.|..-+..||+-|.
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788999999999998888888888876554
No 24
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=67.10 E-value=2.5 Score=30.12 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=21.9
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHH
Q 033888 55 YRIHDLQEDTSALKEEQESLTNRMN 79 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw 79 (109)
-.+|+|+++..-|+-||+.|++.+.
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4589999999999999999998874
No 25
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=65.87 E-value=9.5 Score=24.24 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=13.4
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHH
Q 033888 55 YRIHDLQEDTSALKEEQESLTNRM 78 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rM 78 (109)
.+++.|+.++..|+++|..|..++
T Consensus 54 ~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 54 RKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666665555554
No 26
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=65.21 E-value=10 Score=24.94 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=15.7
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033888 57 IHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
...++.....|.+||..|...+-.++.++
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555544
No 27
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=64.34 E-value=7 Score=23.98 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=15.0
Q ss_pred HhhHHHHHHhHHHHHHHHHHHHHH
Q 033888 62 EDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 62 ~dkasL~~en~~l~~rMw~~k~~L 85 (109)
.|.+.|+.||+.|+.+.-.+++++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~ 42 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEEN 42 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666554
No 28
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=64.16 E-value=11 Score=25.38 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=28.6
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
+.+...++.+...|.+||..|...+-.++.++-.
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888999999999999999999988743
No 29
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=62.78 E-value=5.4 Score=25.94 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=25.7
Q ss_pred ccchhhhhhhhHHhhHHHHHHhHHHHHHHH
Q 033888 50 SLGQKYRIHDLQEDTSALKEEQESLTNRMN 79 (109)
Q Consensus 50 Sl~Qq~~I~~L~~dkasL~~en~~l~~rMw 79 (109)
|-..|++++.|+.+.+.|..+.+.|-..|-
T Consensus 17 SykeqrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 17 SYKLQRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446789999999999999999998888774
No 30
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=62.25 E-value=9.9 Score=21.57 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=17.6
Q ss_pred hhhHHhhHHHHHHhHHHHHHHHHH
Q 033888 58 HDLQEDTSALKEEQESLTNRMNNI 81 (109)
Q Consensus 58 ~~L~~dkasL~~en~~l~~rMw~~ 81 (109)
+.|.+-.+||..||+.|+....++
T Consensus 2 dqlnallasleaenkqlkakveel 25 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEEL 25 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666789999999998877543
No 31
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=61.98 E-value=6.5 Score=25.91 Aligned_cols=36 Identities=11% Similarity=0.355 Sum_probs=30.7
Q ss_pred chhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033888 52 GQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 52 ~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
+=+.+++.|+.|+..|+.+.+.|+.-+..||+-|..
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999976543
No 32
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=61.94 E-value=6.2 Score=25.14 Aligned_cols=32 Identities=6% Similarity=0.175 Sum_probs=28.5
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033888 56 RIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
+|..|+.+...|..+.+.|+.....++++|-.
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999888754
No 33
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=61.07 E-value=7.4 Score=25.59 Aligned_cols=28 Identities=14% Similarity=0.348 Sum_probs=20.5
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHH
Q 033888 55 YRIHDLQEDTSALKEEQESLTNRMNNIK 82 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k 82 (109)
.+...|+.+++.|+++|..|..++..++
T Consensus 59 ~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 59 AEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455667777788888888888877654
No 34
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=58.71 E-value=9.6 Score=24.66 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=15.3
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033888 57 IHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
+.+|+....+|..||..|+..+-.++.+|
T Consensus 38 v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 38 VVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555554
No 35
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=58.66 E-value=15 Score=25.00 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=23.7
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033888 57 IHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
+..|..+.+.|++|+..+..-+..||+.+-.
T Consensus 57 ~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 57 KTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457777888888888888888888887643
No 36
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=58.54 E-value=15 Score=23.76 Aligned_cols=40 Identities=20% Similarity=0.300 Sum_probs=24.7
Q ss_pred hhhHHHHHhhccchHHHHHHHHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHH
Q 033888 20 SLGFIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRM 78 (109)
Q Consensus 20 ~~g~~a~A~k~k~~fiq~~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rM 78 (109)
.++|+..|+. ||+-+ +.+.+.|+.+++.|+++|+.|..++
T Consensus 38 k~~iL~kA~~----yI~~L---------------~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 38 TLSLLTKAKL----HIKKL---------------EDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp THHHHHHHHH----HHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888874 34321 3344566667777777777766655
No 37
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=57.05 E-value=16 Score=25.22 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=20.4
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHH-HHHhhhh
Q 033888 55 YRIHDLQEDTSALKEEQESLTNRMNNIK-HSLLHEA 89 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k-~~L~~EA 89 (109)
.+|+.|.++...|+++.+.++..+...+ ++|+.++
T Consensus 32 ~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~l~~~~ 67 (171)
T 2zvf_A 32 KTVERFFEEWKDQRKEIERLKSVIADLWADILMERA 67 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566666666666666666666655554 3444433
No 38
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=56.44 E-value=15 Score=27.73 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=28.8
Q ss_pred chhhhh----hhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 033888 52 GQKYRI----HDLQEDTSALKEEQESLTNRMNNIKHSLLHEAS 90 (109)
Q Consensus 52 ~Qq~~I----~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~ 90 (109)
+-|++| +.+-+..+.|..+++.....+..+|+.|+..|=
T Consensus 376 ~EQ~~Iv~~l~~~~~~id~l~~~~~~~~~~l~~lk~sLL~~af 418 (464)
T 2y7c_A 376 KEQAEIVRRVEQLFAYADTIEKQVNNALARVNNLTQSILAKAF 418 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455 355556678888888888889999999998873
No 39
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=54.26 E-value=18 Score=23.27 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=20.4
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHH
Q 033888 55 YRIHDLQEDTSALKEEQESLTNRMNNI 81 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~ 81 (109)
.+|..|+.+...|.++++.|...+..-
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457788888888888888887776543
No 40
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=54.12 E-value=24 Score=23.35 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=28.2
Q ss_pred chhhhhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033888 52 GQKYRIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 52 ~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
.-+.+|++|+.|.+.||=.++.+..-+..+++
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44788999999999999999999988888887
No 41
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=53.76 E-value=16 Score=22.20 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=21.9
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHH
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNN 80 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~ 80 (109)
++.|++|+++...=+..++.++..|..
T Consensus 18 ek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 18 KKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 678999999888888888888876643
No 42
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=53.14 E-value=17 Score=24.67 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=15.5
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHH
Q 033888 56 RIHDLQEDTSALKEEQESLTNRM 78 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rM 78 (109)
+|+.|+++++.|+++|+.|+.-.
T Consensus 54 ~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 54 EIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777766543
No 43
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=52.68 E-value=13 Score=24.04 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=29.0
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033888 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
.+|..|+.+...|..+.+.|......++++|-
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999988873
No 44
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=52.65 E-value=17 Score=21.07 Aligned_cols=23 Identities=22% Similarity=0.331 Sum_probs=13.1
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHH
Q 033888 56 RIHDLQEDTSALKEEQESLTNRM 78 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rM 78 (109)
.+.+.+.|.++|++.|.-|-..+
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHH
Confidence 44555666666666666555444
No 45
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=52.19 E-value=14 Score=26.19 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=24.2
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
-.+|++|+++...|+.||..|..-=--|++
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 468999999999999999998865555554
No 46
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=51.56 E-value=15 Score=23.70 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=25.5
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
+.+|.+|+.....|..+++.+..-...+++++-.
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~ 61 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888888888888887777777766543
No 47
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=51.54 E-value=20 Score=25.18 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=25.0
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033888 56 RIHDLQEDTSALKEEQESLTNRMNNIKHS 84 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~~ 84 (109)
.|..|+.|...|+.+++.|..+++++=+.
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~ 64 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQA 64 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58889999999999999999999988653
No 48
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=51.21 E-value=18 Score=29.57 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=27.6
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhh
Q 033888 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHE 88 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~E 88 (109)
.+++.|++++.+|.++++.+...+...+++|+.|
T Consensus 10 ~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 43 (412)
T 3u06_A 10 TEVVHLRQRTEELLRCNEQQAAELETCKEQLFQS 43 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888888888888764
No 49
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=51.02 E-value=12 Score=28.52 Aligned_cols=55 Identities=25% Similarity=0.317 Sum_probs=38.9
Q ss_pred hhhhhhhhHHhhHHHH---HHhHHHHHHHHHHHHHHhhhhccCCCc-chHHHHHHhhcc
Q 033888 53 QKYRIHDLQEDTSALK---EEQESLTNRMNNIKHSLLHEASLEPTG-LFASRLRHLFGE 107 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~---~en~~l~~rMw~~k~~L~~EA~~dss~-v~aSRLR~Ifge 107 (109)
+..+|+.|+++..+|. ++|+.+..++-+|.-.|+...+.+.-. .+..-|+..|+-
T Consensus 77 LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~F~l 135 (252)
T 3e98_A 77 LRERNIEMRHRLSQLMDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHEFQV 135 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCC
Confidence 4567888888886665 689999999999999999755443322 233456666653
No 50
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=50.63 E-value=31 Score=20.06 Aligned_cols=28 Identities=18% Similarity=0.359 Sum_probs=21.8
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033888 56 RIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
|+..|++.-..|-.+|+.|.+....+|.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5667888888888888888887776664
No 51
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=48.97 E-value=13 Score=22.48 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=21.7
Q ss_pred hhhhhhhhHHhhHHHHHHhHHHHHHHH
Q 033888 53 QKYRIHDLQEDTSALKEEQESLTNRMN 79 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~~en~~l~~rMw 79 (109)
-||++++.++..+.+..+...|+.+.+
T Consensus 4 lQrELeEa~Erae~ae~~vnkLR~k~R 30 (45)
T 3zwh_Q 4 LQRELEDATETADAMNREVSSLKNKLR 30 (45)
T ss_dssp SSSHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478899999888888888887777653
No 52
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=47.28 E-value=42 Score=22.46 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=8.9
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q 033888 65 SALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 65 asL~~en~~l~~rMw~~k~ 83 (109)
+.|..+|..|+.--..|++
T Consensus 51 ~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 51 EELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 53
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=47.07 E-value=27 Score=24.12 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=25.9
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033888 56 RIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
.+..|..+.++|+.||+.|..+...+.-+|-+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888888888887777765
No 54
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=46.83 E-value=26 Score=25.80 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=32.3
Q ss_pred cchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 033888 51 LGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEAS 90 (109)
Q Consensus 51 l~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~ 90 (109)
++-|++|-+.-+..+.+...++.....+...|+.|+.++=
T Consensus 168 l~EQ~~I~~~l~~ld~~i~~~~~~i~~l~~~k~~l~~~~~ 207 (425)
T 1yf2_A 168 LEEQKQIAKILTKIDEGIEIIEKSINKLERIKKGLMHKLL 207 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777777778888888888888888999999887753
No 55
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=46.60 E-value=31 Score=23.05 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=22.1
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHH
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMN 79 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw 79 (109)
++.|+|||++....+.+++.+...|-
T Consensus 43 EKTIDDLEDkL~~eKEK~k~i~eeLD 68 (77)
T 3mtu_E 43 VSEYNDLEEKVAHAKEENLNMHQMLD 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 67899999999999999888877654
No 56
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=46.07 E-value=27 Score=26.35 Aligned_cols=42 Identities=12% Similarity=0.044 Sum_probs=35.0
Q ss_pred ccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 033888 50 SLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASL 91 (109)
Q Consensus 50 Sl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~ 91 (109)
+++-|.+|-+.-...+.+.+.++.+-..+..+|++|+.++=.
T Consensus 165 ~l~eQ~~I~~~l~~~d~~i~~~~~~~~~l~~~k~~l~~~~f~ 206 (406)
T 1ydx_A 165 NKNEQHAIANTLSVFDERLENLASLIEINRKLRDEYAHKLFS 206 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667778888888888888999999999999999999887643
No 57
>1bb1_A Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1 PDB: 1bb1_C 1u0i_B
Probab=46.04 E-value=35 Score=19.82 Aligned_cols=30 Identities=23% Similarity=0.467 Sum_probs=25.7
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033888 56 RIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
+|-+.+.|.+..++|-.++++.+-.+|+-.
T Consensus 3 eiaaieyeqaaikeeiaaikdkiaaikeyi 32 (36)
T 1bb1_A 3 EIAAIEYEQAAIKEEIAAIKDKIAAIKEYI 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999999999999999888753
No 58
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=45.46 E-value=27 Score=23.17 Aligned_cols=24 Identities=17% Similarity=0.448 Sum_probs=9.0
Q ss_pred hhHHhhHHHHHHhHHHHHHHHHHH
Q 033888 59 DLQEDTSALKEEQESLTNRMNNIK 82 (109)
Q Consensus 59 ~L~~dkasL~~en~~l~~rMw~~k 82 (109)
++..|++.|.-+.+.|..-+-++|
T Consensus 67 ~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 67 QLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 59
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=44.47 E-value=33 Score=21.88 Aligned_cols=26 Identities=8% Similarity=0.376 Sum_probs=20.8
Q ss_pred hhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033888 58 HDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 58 ~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
=+|.++...|++||+.|+++|-.=+.
T Consensus 13 YaLkDqV~eL~qe~k~m~k~lEeEqk 38 (56)
T 2w6b_A 13 YALKDEVQELRQDNKKMKKSLEEEQR 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788889999999999988876544
No 60
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=44.39 E-value=17 Score=24.61 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=18.1
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHH
Q 033888 54 KYRIHDLQEDTSALKEEQESLTN 76 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~ 76 (109)
|.+|.+|++++..|+.||.-|+.
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888876654
No 61
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=43.17 E-value=41 Score=20.28 Aligned_cols=29 Identities=14% Similarity=0.404 Sum_probs=17.1
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033888 55 YRIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
-++.+||+...+|..-|..|-.|+.-++.
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666655544
No 62
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=42.97 E-value=39 Score=19.45 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=19.0
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033888 56 RIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
|+..|++.-+.|..+|..|..-+-.+|.
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3556778888888888887776665554
No 63
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=42.77 E-value=36 Score=18.71 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=15.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHh
Q 033888 65 SALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 65 asL~~en~~l~~rMw~~k~~L~ 86 (109)
+.|-+|-++|..|++.++..|.
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777777777776664
No 64
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=42.35 E-value=38 Score=20.80 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=19.1
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHH
Q 033888 57 IHDLQEDTSALKEEQESLTNRMNN 80 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~ 80 (109)
+-.|+.|.+||..||+.|++.--+
T Consensus 5 vaqlenevaslenenetlkkknlh 28 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLH 28 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhccc
Confidence 456888999999999999876544
No 65
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=41.25 E-value=22 Score=23.98 Aligned_cols=29 Identities=17% Similarity=0.375 Sum_probs=16.1
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHH
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIK 82 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k 82 (109)
-|++..|+++...|+++.+.++..+..++
T Consensus 6 ~~~~~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 6 HHRMKQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666677766666666665555555444
No 66
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=40.74 E-value=32 Score=27.24 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=23.5
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhccC
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLE 92 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~d 92 (109)
+.+++.|++.+.-|.++.+.++..+..+|+++-.....+
T Consensus 60 ~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPP 98 (251)
T 3m9b_A 60 EARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPP 98 (251)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344455555555556666666666667777776655544
No 67
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=40.63 E-value=36 Score=25.60 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=35.1
Q ss_pred ccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhccC
Q 033888 50 SLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLE 92 (109)
Q Consensus 50 Sl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~d 92 (109)
+++-|.+|-+.-+....+...++.....+.++|+.|+.+|=..
T Consensus 353 pl~eQ~~I~~~l~~id~~i~~~~~~i~~L~~lk~~LL~~lf~G 395 (406)
T 1ydx_A 353 SFQLQRKAGKIVFLLDQKLDQYKKELSSLTVIRDTLLKKLFPD 395 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7777888888777788888888888888999999999887543
No 68
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=40.21 E-value=35 Score=23.92 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHH
Q 033888 39 AMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLT 75 (109)
Q Consensus 39 Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~ 75 (109)
|+.+.-.-=-.+..||.+|++|+.|...|..+-++.+
T Consensus 51 L~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 51 LQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666677889999999999999987665554
No 69
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=40.19 E-value=35 Score=25.75 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=18.0
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033888 56 RIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
.+.+|++++..|++||+-|+.--.+..++|
T Consensus 153 ~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 153 TIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666666666666665555554443
No 70
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=39.45 E-value=17 Score=24.68 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=13.3
Q ss_pred hhhhhHHhhHHHHHHhHHHHH
Q 033888 56 RIHDLQEDTSALKEEQESLTN 76 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~ 76 (109)
+|+.++++.+.|+++|+.|+.
T Consensus 46 ~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 46 EIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666667776666553
No 71
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=39.29 E-value=64 Score=24.28 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=27.9
Q ss_pred HHHHhhcc-chhhhhhhhHHhhHHHHHHhHHHHHHHH
Q 033888 44 LLLSVRSL-GQKYRIHDLQEDTSALKEEQESLTNRMN 79 (109)
Q Consensus 44 ~~Ls~RSl-~Qq~~I~~L~~dkasL~~en~~l~~rMw 79 (109)
+--+.|+. ..|+.|++||++....+.+++.+...|-
T Consensus 130 i~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 130 ICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566665 5788999999999888888888877654
No 72
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=38.69 E-value=19 Score=27.64 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=16.5
Q ss_pred hhhhhHHhhHHHHHHhHHHH
Q 033888 56 RIHDLQEDTSALKEEQESLT 75 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~ 75 (109)
+|.+|++++..|.+||+.|.
T Consensus 162 ~i~~L~a~N~hLqkENeRL~ 181 (186)
T 3q4f_C 162 TIAENQAKNEHLQKENERLL 181 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888875
No 73
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=38.61 E-value=40 Score=25.29 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=31.1
Q ss_pred cchhhhhh----hhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 033888 51 LGQKYRIH----DLQEDTSALKEEQESLTNRMNNIKHSLLHEASL 91 (109)
Q Consensus 51 l~Qq~~I~----~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~ 91 (109)
++-|++|- .+-+..+.+.++.+.+...+..+|+.|+.+|=.
T Consensus 162 l~EQ~~Iv~~Ld~~~~~id~~~~~~~~~~~~l~~~k~~ll~~~~~ 206 (464)
T 2y7c_A 162 LAEQKIIAEKLDTLLAQVDSTKARFEQIPQILKRFRQAVLGGAVN 206 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455553 566667888888888888899999999998743
No 74
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=38.37 E-value=45 Score=21.45 Aligned_cols=26 Identities=8% Similarity=0.418 Sum_probs=20.7
Q ss_pred hhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033888 59 DLQEDTSALKEEQESLTNRMNNIKHS 84 (109)
Q Consensus 59 ~L~~dkasL~~en~~l~~rMw~~k~~ 84 (109)
+|..+-.+|+++++.|+..+-..+..
T Consensus 11 alkDev~eLk~e~k~~k~~le~eqra 36 (61)
T 3l4f_A 11 ALKDEVQELRQDNKKMKKSLEEEQRA 36 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788889999999988888776654
No 75
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=38.31 E-value=52 Score=20.76 Aligned_cols=28 Identities=21% Similarity=0.438 Sum_probs=18.9
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHH
Q 033888 55 YRIHDLQEDTSALKEEQESLTNRMNNIK 82 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k 82 (109)
+++++|..|+.-||+|-++=++-+..+-
T Consensus 10 ~QVe~Lk~ENshLrrEL~dNS~~lskLE 37 (54)
T 1deb_A 10 KQVEALKMENSNLRQELEDNSNHLTKLE 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 4677777777777777776666555443
No 76
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.87 E-value=47 Score=22.73 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=24.7
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
++.|..|+.|..+|+..+.+|-.++.+..+..
T Consensus 44 rr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~ 75 (131)
T 3tnu_A 44 RRTMQNLEIELQSQLSMKASLENSLEETKGRY 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 56788888888888888888888777766543
No 77
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=37.36 E-value=25 Score=26.92 Aligned_cols=33 Identities=3% Similarity=0.196 Sum_probs=20.8
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033888 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
.+.+++.++...|.+||++|...+.++|+++-+
T Consensus 148 ~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e 180 (250)
T 2ve7_C 148 WQYKSSADKMQQLNAAHQEALMKLERLEKEVDE 180 (250)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHSCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457788888888888888888888888888665
No 78
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=36.12 E-value=49 Score=24.34 Aligned_cols=40 Identities=10% Similarity=0.191 Sum_probs=28.8
Q ss_pred cchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 033888 51 LGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEAS 90 (109)
Q Consensus 51 l~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~ 90 (109)
++-|.+|-+.-.....+...++.-...+..+|+.|+.++=
T Consensus 378 l~eQ~~I~~~l~~ld~~i~~~~~~~~~l~~~k~~Ll~~l~ 417 (425)
T 1yf2_A 378 LEEQKQIAKILSSVDKSIELKKQKKEKLQRMKKKIMELLL 417 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4446666666666667777777777778899999988764
No 79
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=35.84 E-value=51 Score=22.47 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=24.2
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHS 84 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~ 84 (109)
++.|..|+.|..+|+..+.+|-.++.+..+.
T Consensus 42 rr~iq~L~~el~~l~~~~~~LE~~l~e~e~~ 72 (129)
T 3tnu_B 42 NRMIQRLRAEIDNVKKQCANLQNAIADAEQR 72 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5678888888888888888888877776554
No 80
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=35.18 E-value=31 Score=20.23 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=16.7
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHH
Q 033888 55 YRIHDLQEDTSALKEEQESLTNR 77 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~r 77 (109)
..|++|+.+.+.|+.....|...
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888777776654
No 81
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=33.81 E-value=42 Score=26.15 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=11.3
Q ss_pred hhhhHHhhHHHHHHhHHHHH
Q 033888 57 IHDLQEDTSALKEEQESLTN 76 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~ 76 (109)
|+.|+++.+.|++||+.|+.
T Consensus 124 ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 124 IEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666655544
No 82
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=33.69 E-value=75 Score=20.68 Aligned_cols=36 Identities=17% Similarity=0.411 Sum_probs=29.7
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhh
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEA 89 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA 89 (109)
+.+|+.+..|++.|.-+.+.+...+-++|...-.|.
T Consensus 6 r~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~ 41 (86)
T 3swk_A 6 RRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEM 41 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999999999999999999987765553
No 83
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=33.57 E-value=37 Score=23.42 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=23.7
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHH
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNN 80 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~ 80 (109)
+.+|+.|+.|+..|+++.+.|-.++-.
T Consensus 18 r~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 18 RLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999887754
No 84
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=33.40 E-value=66 Score=21.83 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=26.2
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhh
Q 033888 56 RIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEA 89 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA 89 (109)
++..|++|.++|.++-+.|=..+...+++|...-
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888888888888888777777777776643
No 85
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=32.86 E-value=60 Score=22.18 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=28.5
Q ss_pred hhhHHhhHHHHHHhHHHHHHHHHHHHHHhhh
Q 033888 58 HDLQEDTSALKEEQESLTNRMNNIKHSLLHE 88 (109)
Q Consensus 58 ~~L~~dkasL~~en~~l~~rMw~~k~~L~~E 88 (109)
+++.+....|.+|++.+.+.+..+++++...
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999998774
No 86
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=32.32 E-value=69 Score=20.80 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=22.6
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033888 56 RIHDLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
+|..|+.+...|..+.+.|...-..++++|-
T Consensus 53 YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 53 YILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888887777777777777766666653
No 87
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=32.06 E-value=60 Score=24.69 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=16.5
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHH----HHHHHHHHhhh
Q 033888 55 YRIHDLQEDTSALKEEQESLTNR----MNNIKHSLLHE 88 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~r----Mw~~k~~L~~E 88 (109)
.+|++|+.+...+.++-+.+... +..|.+.+..+
T Consensus 233 ~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~ 270 (357)
T 3rrk_A 233 ERARLAPEELVGIREEVARLSRESGEALIALWTRAKDE 270 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444 44444444443
No 88
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=31.89 E-value=39 Score=22.58 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=16.1
Q ss_pred hhhhhHHhhHHHHHHhHHHHHH
Q 033888 56 RIHDLQEDTSALKEEQESLTNR 77 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~r 77 (109)
+|+.++++.+.|++||+.|+.-
T Consensus 42 ~ie~~~eEi~~LkeEN~~L~el 63 (79)
T 2zxx_A 42 EIEQKDSEIARLRKENKDLAEV 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888888777543
No 89
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=31.88 E-value=56 Score=24.65 Aligned_cols=13 Identities=23% Similarity=0.583 Sum_probs=5.8
Q ss_pred HHHHHHHHHhhhh
Q 033888 77 RMNNIKHSLLHEA 89 (109)
Q Consensus 77 rMw~~k~~L~~EA 89 (109)
+++++|+.|++||
T Consensus 190 KIR~lq~~Ll~~~ 202 (213)
T 1ik9_A 190 KIRSLHNKLLNAA 202 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 90
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=31.51 E-value=62 Score=25.85 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=12.4
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033888 56 RIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
++++++++...|++|.+.|..+...-|+.+
T Consensus 531 ~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 531 EADAKQKETEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence 333334444444444444444444333333
No 91
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=30.92 E-value=36 Score=26.96 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=30.0
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033888 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
.+++.|+.+...|...|+-|...+.+.|+++..
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~ 86 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLA 86 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999875
No 92
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=30.78 E-value=71 Score=22.21 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=25.5
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhh
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEA 89 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA 89 (109)
..+|.+|+++.+++.+.+.-|+. +|.=|-.-|+||
T Consensus 3 ~~e~~~l~~qi~~~ekr~~RLKe-vF~~ks~eFRea 37 (123)
T 4dzo_A 3 SKEVAELKKQVESAELKNQRLKE-VFQTKIQEFRKA 37 (123)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 46788888888888888887764 555566666665
No 93
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=29.81 E-value=74 Score=22.44 Aligned_cols=13 Identities=15% Similarity=-0.171 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHH
Q 033888 33 SFIQLFAMTGILL 45 (109)
Q Consensus 33 ~fiq~~Lmg~~~~ 45 (109)
+.-.+..|+++-+
T Consensus 54 ~~~r~aVLaALNi 66 (138)
T 3hnw_A 54 SAELRTDMMYLNI 66 (138)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 3345556665543
No 94
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.20 E-value=56 Score=26.43 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=17.8
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033888 56 RIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
+|++|+++...|+++.+.+...+.+++.++-.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 35 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKE 35 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555566666666555555555555543
No 95
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=28.87 E-value=82 Score=21.25 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=15.2
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033888 57 IHDLQEDTSALKEEQESLTNRMNNIKHS 84 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~~k~~ 84 (109)
+++||.++..|..+-+.|..-...++.+
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e 77 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARE 77 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666665555555554444443
No 96
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=28.84 E-value=66 Score=24.26 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=22.9
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033888 56 RIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
.|..|+.+...|+.++..|+.+++++=+
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888888887744
No 97
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=28.65 E-value=38 Score=25.15 Aligned_cols=31 Identities=23% Similarity=0.421 Sum_probs=20.7
Q ss_pred hHHhhHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 033888 60 LQEDTSALKEEQESLTNRMNNIKHSLLHEAS 90 (109)
Q Consensus 60 L~~dkasL~~en~~l~~rMw~~k~~L~~EA~ 90 (109)
+.+..+.+++.++.....+..+|+.|+..|=
T Consensus 378 ~d~~i~~l~~~~~~~~~~L~~lk~~LL~k~f 408 (412)
T 3okg_A 378 IQQQVAALKRAQAETEAELKRLEQAILDKAF 408 (412)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555567788889999987763
No 98
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=28.62 E-value=1.2e+02 Score=19.36 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=29.9
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHH-------HHHHHHHHHhhhhccCCCcchHHHHHHh
Q 033888 54 KYRIHDLQEDTSALKEEQESLTN-------RMNNIKHSLLHEASLEPTGLFASRLRHL 104 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~-------rMw~~k~~L~~EA~~dss~v~aSRLR~I 104 (109)
|+.+..|+.+++.+..+-+.+-. .++++ +-|..++..+.. .+..++..|
T Consensus 8 KkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdi-E~l~q~~e~e~~-~l~~~I~~I 63 (75)
T 3mtu_A 8 KKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNI-ELICQENEGEND-PVLQRIVDI 63 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTGGGTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhhhH-HHHHHHHHH
Confidence 56677777777777777777766 77777 344445443332 345555444
No 99
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=28.19 E-value=21 Score=24.55 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCch
Q 033888 8 SSAGSTAQNPKRS 20 (109)
Q Consensus 8 ~~~~~~~~~~~r~ 20 (109)
-|+|||||+-||+
T Consensus 21 RssGpGGQnVNKv 33 (108)
T 2jva_A 21 RAQGAGGQNVNKV 33 (108)
T ss_dssp CCTTCSSSSSCCC
T ss_pred ECCCCCCCCcCCC
Confidence 4678999998875
No 100
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=28.04 E-value=83 Score=20.49 Aligned_cols=23 Identities=9% Similarity=0.352 Sum_probs=9.6
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHH
Q 033888 57 IHDLQEDTSALKEEQESLTNRMN 79 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw 79 (109)
+++++.++..|+..-..|..+|.
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le 31 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLE 31 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 101
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=27.70 E-value=91 Score=20.73 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=24.9
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
+++++.|+.....|.+.-+.++.++..+.++|-.
T Consensus 94 ~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 94 KSQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777777777777777766643
No 102
>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=27.18 E-value=16 Score=22.57 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=13.0
Q ss_pred hhhhhHHhhHHHHHH
Q 033888 56 RIHDLQEDTSALKEE 70 (109)
Q Consensus 56 ~I~~L~~dkasL~~e 70 (109)
..+|||++.++||++
T Consensus 39 ~ddDLQARLdsLRR~ 53 (54)
T 2v6x_B 39 PDDDLQARLNTLKKQ 53 (54)
T ss_dssp CCHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHhccC
Confidence 578999999999974
No 103
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=26.87 E-value=1e+02 Score=19.87 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=26.6
Q ss_pred HHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033888 46 LSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 46 Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
|=.|-.-|...|++|-+-.....++.+.|...|..+.+.|-.
T Consensus 19 LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 19 LETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566667777666666777777777777777776654
No 104
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=26.50 E-value=46 Score=22.27 Aligned_cols=30 Identities=13% Similarity=0.258 Sum_probs=20.5
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033888 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHS 84 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~ 84 (109)
+..|.|-+|.-||--||.=|.+||.++|++
T Consensus 46 kd~ErLNDEiislNIENNlL~~rl~~l~~E 75 (75)
T 3a7o_A 46 KNTERLNDELISGTIENNVLQQKLSDLKKE 75 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred ccHHHhhHHHHHhHHHHHHHHHHHHHHhcC
Confidence 456677788888888999999999888864
No 105
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=25.55 E-value=86 Score=17.94 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=16.9
Q ss_pred hhhHHhhHHHHHHhHHHHHHHHH
Q 033888 58 HDLQEDTSALKEEQESLTNRMNN 80 (109)
Q Consensus 58 ~~L~~dkasL~~en~~l~~rMw~ 80 (109)
+-|-.|++.|++.|..|.+++-.
T Consensus 10 ~kLl~ekE~l~~r~eqL~~kLe~ 32 (34)
T 1a93_A 10 QKLISEEDLLRKRREQLKHKLEQ 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667788888888888877654
No 106
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=25.33 E-value=61 Score=23.37 Aligned_cols=32 Identities=6% Similarity=0.323 Sum_probs=21.2
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
|.+|++|+.|...|..+-...+.-+-.++.+-
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44688888777777776666666665555543
No 107
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=25.30 E-value=71 Score=25.02 Aligned_cols=30 Identities=7% Similarity=0.358 Sum_probs=23.8
Q ss_pred hhhhhhhhHHhhHHHHHHhHHHHHHHHHHH
Q 033888 53 QKYRIHDLQEDTSALKEEQESLTNRMNNIK 82 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~~en~~l~~rMw~~k 82 (109)
|+++|++||.+...|..+.+.++..+...|
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 441 GQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667999999999998888888777665544
No 108
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=24.86 E-value=1.1e+02 Score=17.63 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=19.7
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033888 56 RIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
|+..|++.-+.|-.+|..|-.-...+|.
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3556777778888888877766655554
No 109
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=24.56 E-value=86 Score=21.52 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=23.0
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033888 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
.+++.|+++.+.|.+..+.|...+..+++.+
T Consensus 88 ~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 118 (142)
T 3gp4_A 88 KQRIELKNRIDVMQEALDRLDFKIDNYDTHL 118 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777788888888888887777654
No 110
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.56 E-value=84 Score=25.08 Aligned_cols=31 Identities=13% Similarity=0.348 Sum_probs=16.8
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHS 84 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~ 84 (109)
+..++.++.++..+++.-+.+++++-.+|++
T Consensus 536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence 3445555566666666555555555544444
No 111
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=24.19 E-value=1.3e+02 Score=20.44 Aligned_cols=35 Identities=17% Similarity=0.430 Sum_probs=24.3
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhh
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHE 88 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~E 88 (109)
+..|+++..|++.|.-+.+.+...+.++|...-.|
T Consensus 26 R~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E 60 (119)
T 3ol1_A 26 RRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 60 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34567777777777777777777777777654433
No 112
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=24.15 E-value=1.2e+02 Score=18.22 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=17.4
Q ss_pred hhhhhhhhHHhhHHHHHHhHHHHH
Q 033888 53 QKYRIHDLQEDTSALKEEQESLTN 76 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~~en~~l~~ 76 (109)
-|..|++|+++++.|+.-.+.|+-
T Consensus 8 lknyiqeleernaelknlkehlkf 31 (46)
T 3he4_B 8 LKNYIQELEERNAELKNLKEHLKF 31 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHH
Confidence 367899999999888765555543
No 113
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=23.83 E-value=71 Score=21.98 Aligned_cols=29 Identities=0% Similarity=0.110 Sum_probs=19.3
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033888 56 RIHDLQEDTSALKEEQESLTNRMNNIKHS 84 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~~ 84 (109)
+++.|+++.+.|++..+.|...+..|++.
T Consensus 103 ~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 131 (148)
T 3gpv_A 103 QEANVLQLIQDTEKNLKKIQQKIAKYEDE 131 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777764
No 114
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.79 E-value=94 Score=25.35 Aligned_cols=32 Identities=13% Similarity=0.403 Sum_probs=18.8
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
+.++..|+.+.+-|.-+++-++..+..+++++
T Consensus 48 ~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~ 79 (428)
T 4b4t_K 48 YFKLKKLEKEYELLTLQEDYIKDEQRHLKREL 79 (428)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666555554
No 115
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=23.68 E-value=1.1e+02 Score=21.31 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=22.6
Q ss_pred cchhhhhhhhHHhhHHHHHHhHHHHHHHHHH
Q 033888 51 LGQKYRIHDLQEDTSALKEEQESLTNRMNNI 81 (109)
Q Consensus 51 l~Qq~~I~~L~~dkasL~~en~~l~~rMw~~ 81 (109)
-.|-++|..|++|.....+|....-.....|
T Consensus 88 e~Q~~ri~~L~~E~~~~~~el~~~v~e~e~l 118 (132)
T 1ykh_B 88 EEQLRKIDMLQKKLVEVEDEKIEAIKKKEKL 118 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999888877776655444433
No 116
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=23.58 E-value=1e+02 Score=20.75 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=22.3
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHH
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIK 82 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k 82 (109)
+.++.+-+..+.+|..+-+.+...|.++|
T Consensus 44 eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 44 ASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888888887754
No 117
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.57 E-value=96 Score=24.39 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=13.0
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHH
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNI 81 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~ 81 (109)
+++|+.|+++++.|+++...+-..+.+-
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 3444444455555554444444444433
No 118
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=22.84 E-value=3.4 Score=25.92 Aligned_cols=12 Identities=33% Similarity=0.299 Sum_probs=6.5
Q ss_pred chHHHHHHHHHH
Q 033888 32 HSFIQLFAMTGI 43 (109)
Q Consensus 32 ~~fiq~~Lmg~~ 43 (109)
.++-.++-.-||
T Consensus 24 ~s~~~ia~~~gI 35 (97)
T 2jn6_A 24 ASLQQIANDLGI 35 (97)
T ss_dssp SCHHHHHHHHTS
T ss_pred ChHHHHHHHHCc
Confidence 345556555555
No 119
>1jy2_N Fibrinogen alpha chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_N
Probab=22.08 E-value=81 Score=19.80 Aligned_cols=21 Identities=29% Similarity=0.645 Sum_probs=17.0
Q ss_pred HHHHhHHHHHHHHHHHHHHhh
Q 033888 67 LKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 67 L~~en~~l~~rMw~~k~~L~~ 87 (109)
+-+.+++..+|+.++|+.|+.
T Consensus 30 id~~~~d~~~RI~kl~~~L~~ 50 (53)
T 1jy2_N 30 IDEVDQDFTSRINKLRDSLFN 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345678999999999999975
No 120
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=21.98 E-value=85 Score=23.06 Aligned_cols=39 Identities=13% Similarity=0.281 Sum_probs=32.2
Q ss_pred hccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033888 49 RSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 49 RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
||+-+...+-.+-++.+.|.++-+.++.++-+++++-..
T Consensus 92 ~s~~red~L~~~laqLe~ls~qL~~ls~~v~~L~~q~~~ 130 (140)
T 3iyn_Q 92 RSSARDDKLTALLAQLDSLTRELNVVSQQLLDLRQQVSA 130 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTT
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666667778888999999999999999999987654
No 121
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=21.31 E-value=1.3e+02 Score=17.35 Aligned_cols=28 Identities=14% Similarity=0.366 Sum_probs=20.5
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033888 56 RIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
|+..||+.-+.|-.+|..|..-+-.+|.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5667888888888888888776666654
No 122
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.29 E-value=59 Score=20.40 Aligned_cols=18 Identities=11% Similarity=0.331 Sum_probs=8.6
Q ss_pred hhhhHHhhHHHHHHhHHH
Q 033888 57 IHDLQEDTSALKEEQESL 74 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l 74 (109)
|..|+.+...|..+++.|
T Consensus 59 I~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444454444444444443
No 123
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=21.20 E-value=1.2e+02 Score=22.48 Aligned_cols=21 Identities=19% Similarity=0.223 Sum_probs=11.1
Q ss_pred hhhhhhHHhhHHHHHHhHHHH
Q 033888 55 YRIHDLQEDTSALKEEQESLT 75 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~ 75 (109)
..|+.|+.+...|+.+.+.+.
T Consensus 68 ~~I~~L~~El~~l~~ki~dLe 88 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLK 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555554
No 124
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.13 E-value=1.3e+02 Score=21.63 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=22.8
Q ss_pred cchhhhhhhhHHhhHHHHHHhHHHHHHHHHH
Q 033888 51 LGQKYRIHDLQEDTSALKEEQESLTNRMNNI 81 (109)
Q Consensus 51 l~Qq~~I~~L~~dkasL~~en~~l~~rMw~~ 81 (109)
-.|-.+|..|++|.....+|....-.....|
T Consensus 88 eeQ~~ri~~Le~E~~~~~~el~~~v~eae~l 118 (151)
T 1yke_B 88 EEQLRKIDMLQKKLVEVEDEKIEAIKKKEKL 118 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999988887776655544433
No 125
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=21.05 E-value=1.3e+02 Score=17.33 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=20.4
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033888 56 RIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
|+..|++.-+.|-.+|..|-.-...+|.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5667888888888888887776665554
No 126
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=20.99 E-value=1.4e+02 Score=17.47 Aligned_cols=30 Identities=13% Similarity=0.301 Sum_probs=20.3
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033888 56 RIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
|+..|++.-..|..++..|-.-...+|.-|
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 456677777777777777776666665433
No 127
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=20.80 E-value=1.4e+02 Score=21.24 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=21.6
Q ss_pred hhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhh
Q 033888 58 HDLQEDTSALKEEQESLTNRMNNIKHSLLHEA 89 (109)
Q Consensus 58 ~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA 89 (109)
+=|..|.+.|+++++.+.+.--+-|.+|-.|-
T Consensus 35 DPL~~ELeRLr~~~d~~~K~HE~kklqLkse~ 66 (115)
T 3vem_A 35 DPFLHELEKLRRESENSKKTFEEKKSILKAEL 66 (115)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666667777777777777777777776553
No 128
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=20.59 E-value=1.1e+02 Score=31.13 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=34.2
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh-hhccC
Q 033888 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH-EASLE 92 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~-EA~~d 92 (109)
+++--|||+++..|.+++...+.++.++-+.|++ .+++.
T Consensus 2138 ~~ErPdLE~~r~~Li~~~~~~k~~Lk~lEd~lL~~Ls~s~ 2177 (2695)
T 4akg_A 2138 TEENAEMQRKREDLIKLNTEYKLKLKNLEKRLLEELNNSQ 2177 (2695)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4677899999999999999999999999999998 44443
No 129
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.28 E-value=1.6e+02 Score=18.79 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=8.6
Q ss_pred hhHHhhHHHHHHhHHHHHHHHHH
Q 033888 59 DLQEDTSALKEEQESLTNRMNNI 81 (109)
Q Consensus 59 ~L~~dkasL~~en~~l~~rMw~~ 81 (109)
.++.+...|+.+.+.+...+-.+
T Consensus 75 ~l~~~i~~l~~~i~~l~~~~~~l 97 (112)
T 1l8d_A 75 NSKNTLAKLIDRKSELERELRRI 97 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 130
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=20.18 E-value=1.5e+02 Score=19.35 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=17.4
Q ss_pred hhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033888 59 DLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 59 ~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
.|..+.+-|..|+++|..++....+++-
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~ 30 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYK 30 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666665554
No 131
>4f43_A Protelomerase; recombination-DNA complex; HET: DNA; 2.35A {Agrobacterium tumefaciens} PDB: 4f41_A*
Probab=20.11 E-value=88 Score=25.70 Aligned_cols=55 Identities=18% Similarity=0.214 Sum_probs=36.0
Q ss_pred hhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHhhcc
Q 033888 48 VRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLEPTGLFASRLRHLFGE 107 (109)
Q Consensus 48 ~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~dss~v~aSRLR~Ifge 107 (109)
+||..+=..+++|. .+.=|..+..++.+.=+..|.+--....+...-.||+|||+
T Consensus 216 LRs~~~i~~l~~Ls-----~~~Ins~~~~~vn~a~~~~F~dIVp~ee~~~~hdlRAIYa~ 270 (320)
T 4f43_A 216 LRESGQGKLWHGMS-----IDDFSSETRLLLRDTVFNLFEDVWPKEELPKPYGLRHLYAE 270 (320)
T ss_dssp HHTSHHHHHHTTCC-----HHHHHHHHHHHHHHHHHHHTTTTSCTTSCCCTTHHHHHHHH
T ss_pred HHhcccccccccCC-----HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHH
Confidence 57776554455552 33345666788888888888854444444445699999985
Done!