BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033889
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 60
+ N+ F P TV E RIY L +FCD +YP+ PP+V+F ++I M+CV++ G V
Sbjct: 58 LSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDN-CGRVIKNN 116
Query: 61 FGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 98
+L NW R YT+E IL L++EM + N++L QP EG
Sbjct: 117 LHILKNWNRNYTIETILISLRQEMLSSANKRLPQPNEG 154
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 60
+ N+ F P TV E RIY L +FCD +YP+ PP+V+F ++I M+CV++ G V
Sbjct: 54 LSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDN-CGRVIKNN 112
Query: 61 FGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 98
+L NW R YT+E IL L++EM + N++L QP EG
Sbjct: 113 LHILKNWNRNYTIETILISLRQEMLSSANKRLPQPNEG 150
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 60/98 (61%)
Query: 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 60
+ + P+T++E RIY LK+ C YPE PP VRF ++INM VN GVV+P+
Sbjct: 40 LTRWTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRA 99
Query: 61 FGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 98
+L WQ Y+++ +L +L++ M + N KL QPPEG
Sbjct: 100 ISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 137
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 60/98 (61%)
Query: 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 60
+ + P+T++E RIY LK+ C YPE PP VRF ++INM VN GVV+P+
Sbjct: 58 LTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRA 117
Query: 61 FGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 98
+L WQ Y+++ +L +L++ M + N KL QPPEG
Sbjct: 118 ISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 155
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 60/98 (61%)
Query: 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 60
+ + P+T++E RIY LK+ C YPE PP VRF ++INM VN GVV+P+
Sbjct: 68 LTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRA 127
Query: 61 FGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 98
+L WQ Y+++ +L +L++ M + N KL QPPEG
Sbjct: 128 ISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 165
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Query: 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 60
M + P + HE RIY L + C +YP+ PP V F S+IN+ CVN TG V+
Sbjct: 38 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQ-TD 96
Query: 61 FGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 98
F L +W+R YTME +L L+KEMA P N+KL QP EG
Sbjct: 97 FHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEG 134
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Query: 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 60
M + P + HE RIY L + C +YP+ PP V F S+IN+ CVN TG V+
Sbjct: 39 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQ-TD 97
Query: 61 FGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 98
F L +W+R YTME +L L+KEMA P N+KL QP EG
Sbjct: 98 FHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEG 135
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 61/98 (62%)
Query: 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 60
+ + P+T +E RIY LK+ C YPE PPSVRF ++INM +N+ +G+V+ +
Sbjct: 43 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARS 102
Query: 61 FGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 98
+L WQ Y+++ +L +L++ M + N KL QPPEG
Sbjct: 103 IPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 140
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 61/98 (62%)
Query: 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 60
+ + P+T +E RIY LK+ C YPE PPSVRF ++INM +N+ +G+V+ +
Sbjct: 48 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARS 107
Query: 61 FGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 98
+L WQ Y+++ +L +L++ M + N KL QPPEG
Sbjct: 108 IPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 145
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 61/98 (62%)
Query: 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 60
+ + P+T +E RIY LK+ C YPE PPSVRF ++INM +N+ +G+V+ +
Sbjct: 38 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARS 97
Query: 61 FGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 98
+L WQ Y+++ +L +L++ M + N KL QPPEG
Sbjct: 98 IPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 135
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 61/98 (62%)
Query: 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 60
+ + P+T +E RIY LK+ C YPE PPSVRF ++INM +N+ +G+V+ +
Sbjct: 37 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARS 96
Query: 61 FGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 98
+L WQ Y+++ +L +L++ M + N KL QPPEG
Sbjct: 97 IPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 134
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 2 VNYFPFFFSGP-QTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 60
+ YF GP Q+ +E I++L+L+ DYP + P VRF ++I ++ +
Sbjct: 32 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRLGRI---SL 88
Query: 61 FGLLVNWQREYTMEDILTQLKKEMAAPH 88
L NW + +L ++ +A+P+
Sbjct: 89 DVLKTNWSPALQIRTVLLSIQALLASPN 116
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 2 VNYFPFFFSGP-QTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI---NMTCVNHETGVVE 57
+ YF GP Q+ +E I++L+L+ DYP + P VRF ++I N+ + + V
Sbjct: 32 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRISLDV- 90
Query: 58 PKKFGLLVNWQREYTMEDILTQLKKEMAAPH 88
L NW + +L ++ +A+P+
Sbjct: 91 -----LKTNWSPALQIRTVLLSIQALLASPN 116
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 8 FFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVN- 66
F T +G ++L L +DYP KPP+VRF SR+ + + + +L N
Sbjct: 40 IFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSIC----LDILQNQ 95
Query: 67 WQREYTMEDILTQLKKEMAAPH 88
W Y + ILT ++ + P+
Sbjct: 96 WSPIYDVAAILTSIQSLLCDPN 117
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 4 YFPFFFSGPQ-TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 44
+F +GP T +EG Y+L+LF + YP +PP VRF ++I
Sbjct: 32 HFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKI 73
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 2 VNYFPFFFSGP-QTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 60
+ YF GP Q+ +E I++L+L+ DYP + P VRF ++I ++ +
Sbjct: 32 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRIC---L 88
Query: 61 FGLLVNWQREYTMEDILTQLKKEMAAPH 88
L NW + +L ++ +A+P+
Sbjct: 89 DVLKTNWSPALQIRTVLLSIQALLASPN 116
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 4 YFPFFFSGPQ-TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 44
+F +GP T +EG Y+L+LF + YP +PP VRF ++I
Sbjct: 32 HFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKI 73
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 2 VNYFPFFFSGP-QTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 60
+ YF GP Q+ +E I++L+L+ DYP + P VRF ++I ++ +
Sbjct: 34 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRIC---L 90
Query: 61 FGLLVNWQREYTMEDILTQLKKEMAAPH 88
L NW + +L ++ +A+P+
Sbjct: 91 DVLKTNWSPALQIRTVLLSIQALLASPN 118
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 12 PQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREY 71
P +V+EG ++ L + DYP KPP V F +RI +N + GV+ L NW
Sbjct: 43 PGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQ-GVICLDI--LKDNWSPAL 99
Query: 72 TMEDILTQL 80
T+ +L +
Sbjct: 100 TISKVLLSI 108
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 9 FSGPQ-TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNW 67
GP+ TV+E Y+L L DYP KPP V+F + V+ + L NW
Sbjct: 45 LDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDI---LKENW 101
Query: 68 QREYTMEDILTQLKKEMAAPHN 89
Y + IL L+ + P+N
Sbjct: 102 TASYDVRTILLSLQSLLGEPNN 123
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 3 NYFPF--FFSGPQ-TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPK 59
N+F + F GP+ T +EG + L + DYP PP ++F ++I ++ +TG +
Sbjct: 51 NFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAI--- 107
Query: 60 KFGLLVN-WQREYTMEDILTQLKKEMAAPHNRKLVQPPEGPHHMDV 104
+L N W T+ L ++ ++ P P+ P +V
Sbjct: 108 CLDVLKNEWSPALTIRTALLSIQALLSDPQ-------PDDPQDAEV 146
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 2 VNYFPFFFSGPQ-TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 44
YF +GPQ + EG ++L+LF ++YP P VRF ++I
Sbjct: 37 ARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI 80
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 4 YFPFFFSGPQ-TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 44
YF +GPQ + EG ++L+LF ++YP P VRF ++I
Sbjct: 36 YFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI 77
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The
P1 Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
Length = 155
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 4 YFPFFFSGPQ-TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 44
YF +GPQ + EG ++L+LF ++YP P VRF ++I
Sbjct: 37 YFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI 78
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 4 YFPFFFSGPQ-TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 44
YF +GPQ + EG ++L+LF ++YP P VRF ++I
Sbjct: 34 YFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI 75
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
Query: 2 VNYFPFFFSGPQ-TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 60
YF +GPQ + EG ++L+LF ++YP P VRF ++I V+ +
Sbjct: 30 ARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRIC---- 85
Query: 61 FGLLVN-WQREYTMEDILTQLKKEMAAPHNRKLVQPPEGPHHMDV 104
+L + W + +L ++ ++AP+ P+ P DV
Sbjct: 86 LDILKDKWSPALQIRTVLLSIQALLSAPN-------PDDPLANDV 123
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 18 GRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVE 57
G YQL + DYP +PP+VRF + + V E G+ +
Sbjct: 68 GNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICD 107
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 12 PQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 56
P T +EG YQL++ + YP PP VRF ++I ++ TG +
Sbjct: 51 PDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 95
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 12 PQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 55
P T++EG ++ L +DYP+KPP ++F S I ++ E V
Sbjct: 44 PDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNV 87
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 12 PQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 56
P T +EG YQL++ + YP PP VRF ++I ++ TG +
Sbjct: 49 PDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 93
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 12 PQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 56
P T +EG YQL++ + YP PP VRF ++I ++ TG +
Sbjct: 48 PDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 92
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 12 PQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 56
P T +EG YQL++ + YP PP VRF ++I ++ TG +
Sbjct: 64 PDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 108
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 12 PQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 56
P T +EG YQL++ + YP PP VRF ++I ++ TG +
Sbjct: 100 PDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 144
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 12 PQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREY 71
P +V+EG ++ L + +YP KPP V F +RI +N + GV+ L NW
Sbjct: 88 PGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQ-GVICLDI--LKDNWSPAL 144
Query: 72 TMEDILTQL 80
T+ +L +
Sbjct: 145 TISKVLLSI 153
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 2 VNYFPFFFSGPQ-TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 56
+N F F GPQ T +EG ++++++ YP K PS+ F ++I ++ +G V
Sbjct: 50 LNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTV 105
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 11 GPQ-TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVN-WQ 68
GPQ T E ++L L ++YP KPP+V+F S++ V + + +L N W
Sbjct: 45 GPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSIC----LDILQNRWS 100
Query: 69 REYTMEDILTQLKKEMAAPH 88
Y + ILT ++ + P+
Sbjct: 101 PTYDVAAILTSIQSLLDEPN 120
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 8 FFSGP-QTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVN 66
F +GP T +EG + L + DYP PP ++F ++I ++ +TG + +L +
Sbjct: 80 FIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAI---CLDILKH 136
Query: 67 -WQREYTMEDILTQLKKEMAAP 87
W T+ L ++ +A P
Sbjct: 137 EWSPALTIRTALLSIQAMLADP 158
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 11 GPQ-TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVN-WQ 68
GPQ T E ++L L ++YP KPP+V+F S++ V + + +L N W
Sbjct: 42 GPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSIC----LDILQNRWS 97
Query: 69 REYTMEDILTQLKKEMAAPH 88
Y + ILT ++ + P+
Sbjct: 98 PTYDVAAILTSIQSLLDEPN 117
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 11 GPQ-TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVN-WQ 68
GP+ T E ++L + ++YP KPP+VRF S++ V + + +L N W
Sbjct: 42 GPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSIC----LDILQNRWS 97
Query: 69 REYTMEDILTQLKKEMAAPH 88
Y + ILT ++ + P+
Sbjct: 98 PTYDVSSILTSIQSLLDEPN 117
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 7 FFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI--------NMTCVN--HETGVV 56
P T++EG +++ L KDYP +PP ++F + I C++ HE G
Sbjct: 53 LIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPG-- 110
Query: 57 EPKKFGLLV---NWQREYTMEDILTQLKKEMAAPHN 89
K+G W +T+E I+ + +A P+
Sbjct: 111 -EDKYGYEKPEERWLPIHTVETIMISVISMLADPNG 145
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 12 PQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREY 71
P++ ++G ++ L + DYP KPP V F +RI +N + L W
Sbjct: 44 PESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI---LRSQWSPAL 100
Query: 72 TMEDILTQLKKEMAAPH 88
T+ +L + + P+
Sbjct: 101 TISKVLLSICSLLCDPN 117
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 5 FPFFFSGPQ-TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 56
F F GP T +EG I+++ + DYP PS+ F +++ V+ +G V
Sbjct: 31 FDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSV 83
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 32.0 bits (71), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 8 FFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVN- 66
F P T +EG + + + +YP KPP ++F +++ ++ TG + +L N
Sbjct: 38 FLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAI---CLDILKNA 94
Query: 67 WQREYTMEDILTQLKKEMAAP 87
W T++ L L+ + +P
Sbjct: 95 WSPVITLKSALISLQALLQSP 115
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 12 PQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREY 71
P + ++G ++ L + DYP KPP + F ++I +N + K L W
Sbjct: 47 PDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI---KLDILRSQWSPAL 103
Query: 72 TMEDILTQLKKEMAAPH 88
T+ +L + + P+
Sbjct: 104 TVSKVLLSICSLLCDPN 120
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 16 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED 75
++G ++ L + DYP KPP V F +RI +N + L W T+
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLD---ALRSQWSPALTISK 103
Query: 76 ILTQLKKEMAAPH 88
+L + + P+
Sbjct: 104 VLLSICSLLCDPN 116
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 56
+ N+ F P T +EG ++ +L DYP PP+ RF +++ + +ETG V
Sbjct: 34 LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI-YETGDV 88
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 56
+ N+ F P T +EG ++ +L DYP PP+ RF +++ + +ETG V
Sbjct: 37 LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI-YETGDV 91
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 23/99 (23%)
Query: 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRF-----------HSRINMTCV 49
++N+ P+T EG +Y+L + ++YP +PP RF + ++ +
Sbjct: 44 LMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSIL 103
Query: 50 NHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 88
N E G W+ T++ IL ++ + P+
Sbjct: 104 NEEEG------------WKPAITIKQILLGIQDLLDDPN 130
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 11 GPQ-TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVN-WQ 68
GP+ + + G ++ L + DYP KPP V F ++I +N + + +L + W
Sbjct: 59 GPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAIC----LDILKDQWS 114
Query: 69 REYTMEDILTQLKKEMAAPH 88
T+ +L + + P+
Sbjct: 115 PALTISKVLLSISSLLTDPN 134
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 12 PQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREY 71
P + ++G ++ L + DYP KPP + F ++I +N + L W
Sbjct: 59 PDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDI---LRSQWSPAL 115
Query: 72 TMEDILTQLKKEMAAPH 88
T+ +L + + P+
Sbjct: 116 TVSKVLLSICSLLCDPN 132
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 12 PQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREY 71
P + ++G ++ L + DYP KPP + F ++I +N + L W
Sbjct: 43 PDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDI---LRSQWSPAL 99
Query: 72 TMEDILTQLKKEMAAPH 88
T+ +L + + P+
Sbjct: 100 TVSKVLLSICSLLCDPN 116
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 8 FFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVN- 66
F P T +EG + + + +YP KPP ++F +++ ++ TG + +L N
Sbjct: 39 FLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAI---CLDILRNA 95
Query: 67 WQREYTMEDILTQLKKEMAAPH 88
W T++ L L+ + +P
Sbjct: 96 WSPVITLKSALISLQALLQSPE 117
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 9 FSGPQ-TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI--NMTCVNHETGVVEPKKFGLLV 65
GP+ T + G ++++KL KD+P PP F ++I N E V K+
Sbjct: 49 IEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKR----- 103
Query: 66 NWQREYTMEDILTQLKKEMAAPH 88
+W E + +L +K + P+
Sbjct: 104 DWTAELGIRHVLLTIKCLLIHPN 126
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 12 PQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREY 71
P + ++G ++ L + DYP KPP + F ++I +N + L W
Sbjct: 47 PDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDI---LRSQWSPAL 103
Query: 72 TMEDILTQLKKEMAAPH 88
T+ +L + + P+
Sbjct: 104 TVSKVLLSICSLLCDPN 120
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 16 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVN-WQREYTME 74
+ G ++ L + DYP KPP V F +RI +N + +L + W T+
Sbjct: 45 YAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSIC----LDILRDQWSPALTIS 100
Query: 75 DILTQLKKEMAAPH 88
+L + + P+
Sbjct: 101 KVLLSISSLLTDPN 114
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 14 TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM 73
T EG +++L++ DYP PP +F + V + +G V +W+ T+
Sbjct: 51 TPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVSLSILEEDKDWRPAITI 109
Query: 74 EDILTQLKKEMAAPHNRKLVQPPEGPHHMDVY 105
+ IL +++ + P+ +Q P +Y
Sbjct: 110 KQILLGIQELLNEPN----IQDPAQAEAYTIY 137
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 16 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED 75
++G ++ L + DYP KPP V F +RI +N + L W T+
Sbjct: 45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNGSI---SLDILRSQWSPALTISK 101
Query: 76 ILTQLKKEMAAPH 88
+L + + P+
Sbjct: 102 VLLSICSLLCDPN 114
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 14 TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM 73
T EG +++L++ DYP PP +F + V + +G V +W+ T+
Sbjct: 51 TPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVXLSILEEDKDWRPAITI 109
Query: 74 EDILTQLKKEMAAPH 88
+ IL +++ + P+
Sbjct: 110 KQILLGIQELLNEPN 124
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 16 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED 75
++G ++ L + DYP KPP V F +RI +N + L W T+
Sbjct: 53 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI---LRSQWSPALTISK 109
Query: 76 ILTQLKKEMAAPH 88
+L + + P+
Sbjct: 110 VLLSICSLLCDPN 122
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 13 QTVHEGRIYQLKLFCDKDYPEKPPSVRF 40
T++ +Y+LK+ DYP KPP V F
Sbjct: 47 NTIYANEVYKLKIIFPDDYPLKPPIVYF 74
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 11 GP-QTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVN-WQ 68
GP T +E ++L L D++YP KPP V+F S + V + +L N W
Sbjct: 42 GPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEIC----LDILQNRWT 97
Query: 69 REYTMEDILTQLKKEMAAPH 88
Y + ILT ++ P+
Sbjct: 98 PTYDVASILTSIQSLFNDPN 117
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 16 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED 75
++G ++ L + DYP KPP V F +RI +N + L W T+
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI---LRSQWSPALTISK 103
Query: 76 ILTQLKKEMAAPH 88
+L + + P+
Sbjct: 104 VLLSICSLLCDPN 116
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 16 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED 75
++G ++ L + DYP KPP V F +RI +N + L W T+
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI---LRSQWSPALTISK 103
Query: 76 ILTQLKKEMAAPH 88
+L + + P+
Sbjct: 104 VLLSICSLLCDPN 116
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 16 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED 75
++G ++ L + DYP KPP V F +RI +N + L W T+
Sbjct: 63 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI---LRSQWSPALTISK 119
Query: 76 ILTQLKKEMAAPH 88
+L + + P+
Sbjct: 120 VLLSICSLLCDPN 132
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 16 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED 75
++G ++ L + DYP KPP V F +RI +N + L W T+
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI---LRSQWSPALTISK 103
Query: 76 ILTQLKKEMAAPH 88
+L + + P+
Sbjct: 104 VLLSICSLLCDPN 116
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 16 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED 75
++G ++ L + DYP KPP V F +RI +N + L W T+
Sbjct: 50 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI---LRSQWSPALTISK 106
Query: 76 ILTQLKKEMAAPH 88
+L + + P+
Sbjct: 107 VLLSICSLLCDPN 119
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 16 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED 75
++G ++ L + DYP KPP V F +RI +N + L W T+
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI---LRSQWSPALTISK 103
Query: 76 ILTQLKKEMAAPH 88
+L + + P+
Sbjct: 104 VLLSICSLLCDPN 116
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 16 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED 75
++G ++ L + DYP KPP V F +RI +N + L W T+
Sbjct: 45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI---LRSQWSPALTISK 101
Query: 76 ILTQLKKEMAAPH 88
+L + + P+
Sbjct: 102 VLLSICSLLCDPN 114
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 16 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED 75
++G ++ L + DYP KPP V F +RI +N + L W T+
Sbjct: 55 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI---LRSQWSPALTISK 111
Query: 76 ILTQLKKEMAAPH 88
+L + + P+
Sbjct: 112 VLLSICSLLCDPN 124
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 16 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED 75
++G ++ L + DYP KPP V F +RI +N + L W T+
Sbjct: 44 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI---LRSQWSPALTISK 100
Query: 76 ILTQLKKEMAAPH 88
+L + + P+
Sbjct: 101 VLLSICSLLCDPN 113
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 16 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED 75
++G ++ L + DYP KPP V F +RI +N + L W T+
Sbjct: 55 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI---LRSQWSPALTISK 111
Query: 76 ILTQLKKEMAAPH 88
+L + + P+
Sbjct: 112 VLLSICSLLCDPN 124
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 16 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED 75
++G ++ L + DYP KPP V F +RI +N + L W T+
Sbjct: 63 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIXLDI---LRSQWSPALTISK 119
Query: 76 ILTQLKKEMAAPH 88
+L + + P+
Sbjct: 120 VLLSICSLLCDPN 132
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 9 FSGPQ-TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 56
F GP+ T +E + L + DYP K PS+ F +RI V+ +G V
Sbjct: 44 FKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSV 92
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 16 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED 75
++G ++ L + DYP KPP V F +RI +N + L W T+
Sbjct: 45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI---SLDILRSQWSPALTISK 101
Query: 76 ILTQLKKEMAAPH 88
+L + + P+
Sbjct: 102 VLLSICSLLCDPN 114
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 16 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED 75
++G ++ L + DYP KPP V F +RI +N + L W T+
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDI---LRSQWGPALTISK 103
Query: 76 ILTQLKKEMAAPH 88
+L + + P+
Sbjct: 104 VLLSICSLLCDPN 116
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 16 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED 75
++G ++ L + DYP KPP V F +RI +N + L W T+
Sbjct: 48 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI---SLDILRSQWSPALTISK 104
Query: 76 ILTQLKKEMAAPH 88
+L + + P+
Sbjct: 105 VLLSICSLLCDPN 117
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 14 TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM 73
T EG +++L++ DYP PP +F + V + +G V +W+ T+
Sbjct: 54 TPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSILEEDKDWRPAITI 112
Query: 74 EDILTQLKKEMAAPHNRKLVQPPEGPHHMDVY 105
+ IL +++ + P+ +Q P +Y
Sbjct: 113 KQILLGIQELLNEPN----IQAPAQAEAYTIY 140
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 14 TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM 73
T EG +++L++ DYP PP +F + V + +G V +W+ T+
Sbjct: 54 TPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSILEEDKDWRPAITI 112
Query: 74 EDILTQLKKEMAAPHNRKLVQPPEGPHHMDVYA 106
+ IL +++ + P+ +Q P +Y
Sbjct: 113 KQILLGIQELLNEPN----IQSPAQAEAYTIYC 141
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 14 TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM 73
T EG +++L++ DYP PP +F + V + +G V +W+ T+
Sbjct: 56 TPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSILEEDKDWRPAITI 114
Query: 74 EDILTQLKKEMAAPH 88
+ IL +++ + P+
Sbjct: 115 KQILLGIQELLNEPN 129
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 8 FFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV-VEPKKFGLLVN 66
G T +E +++L++ + YP +PP +RF + I ++ + ++ K
Sbjct: 40 ILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGA 99
Query: 67 WQREYTMEDILTQLKKEMAAPHNRKLVQPPEGPHHMDVYA 106
W+ + +LT ++ M+ P+ P+ P D+ +
Sbjct: 100 WRPSLNIATVLTSIQLLMSEPN-------PDDPLMADISS 132
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 14 TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM 73
T EG +++L++ DYP PP +F + V + +G V +W+ T+
Sbjct: 53 TPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSILEEDKDWRPAITI 111
Query: 74 EDILTQLKKEMAAPHNRKLVQPPEGPHHMDVYA 106
+ IL +++ + P+ +Q P +Y
Sbjct: 112 KQILLGIQELLNEPN----IQDPAQAEAYTIYC 140
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 14 TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM 73
T EG +++L++ DYP PP +F + V + +G V +W+ T+
Sbjct: 51 TPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSILEEDKDWRPAITI 109
Query: 74 EDILTQLKKEMAAPHNRKLVQPPEGPHHMDVYA 106
+ IL +++ + P+ +Q P +Y
Sbjct: 110 KQILLGIQELLNEPN----IQDPAQAEAYTIYC 138
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 14 TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM 73
T EG +++L++ DYP PP +F + V + +G V +W+ T+
Sbjct: 52 TPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSILEEDKDWRPAITI 110
Query: 74 EDILTQLKKEMAAPHNRKLVQPPEGPHHMDVYA 106
+ IL +++ + P+ +Q P +Y
Sbjct: 111 KQILLGIQELLNEPN----IQDPAQAEAYTIYC 139
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 14 TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM 73
T EG +++L++ DYP PP +F + V + +G V +W+ T+
Sbjct: 53 TPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSILEEDKDWRPAITI 111
Query: 74 EDILTQLKKEMAAPHNRKLVQPPEGPHHMDVYA 106
+ IL +++ + P+ +Q P +Y
Sbjct: 112 KQILLGIQELLNEPN----IQDPAQAEAYTIYC 140
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 14 TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM 73
T EG +++L++ DYP PP +F + V + +G V +W+ T+
Sbjct: 54 TPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSILEEDKDWRPAITI 112
Query: 74 EDILTQLKKEMAAPH 88
+ IL +++ + P+
Sbjct: 113 KQILLGIQELLNEPN 127
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 14 TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM 73
T EG +++L++ DYP PP +F + V + +G V +W+ T+
Sbjct: 54 TPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQV-YPSGTVCLSILEEDKDWRPAITI 112
Query: 74 EDILTQLKKEMAAPH 88
+ IL +++ + P+
Sbjct: 113 KQILLGIQELLNEPN 127
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Query: 13 QTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETG------VVEPKKFGLLVN 66
+V +G ++QL + +Y PP V+F + V+ TG + P+K
Sbjct: 64 NSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEK------ 117
Query: 67 WQREYTMEDILTQLKKEMAAP 87
W YT+ IL L+ ++ P
Sbjct: 118 WNTNYTLSSILLALQVMLSNP 138
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 16 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED 75
++G ++ L + DYP KPP V F ++I +N + L W T+
Sbjct: 50 YQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDI---LRSQWSPALTVSK 106
Query: 76 ILTQLKKEMAAPH 88
+L + + P+
Sbjct: 107 VLLSICSLLCDPN 119
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 14 TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM 73
T EG +++L++ DYP PP +F + V +G V +W+ T+
Sbjct: 54 TPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-APSGTVCLSILEEDKDWRPAITI 112
Query: 74 EDILTQLKKEMAAPH 88
+ IL +++ + P+
Sbjct: 113 KQILLGIQELLNEPN 127
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 16 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 55
++G ++ L + DYP KPP V F +RI +N +
Sbjct: 44 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 83
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 16 HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED 75
++G ++ L + DYP KPP V F +RI +N + L W T+
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDI---LRSQWSPALTISK 103
Query: 76 ILTQLKKEMAAPH 88
+L + + P+
Sbjct: 104 VLLSICSLLCDPN 116
>pdb|3BC8|A Chain A, Crystal Structure Of Mouse Selenocysteine Synthase
pdb|3BCA|A Chain A, Crystal Structure Of Mouse Selenocysteine Synthase, Sodium
Iodide Soak
pdb|3BCB|A Chain A, Crystal Structure Of Mouse Selenocysteine Synthase, Sodium
Phosphate Soak
Length = 450
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 78 TQLKKEMAAPHNRKLVQPPEGP 99
TQLKK +A HN +L+Q P P
Sbjct: 332 TQLKK-LAEAHNERLLQTPHNP 352
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
Length = 136
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 13 QTVHEGRIYQLKLFCDKDYPEKPPSVRF 40
T++ +Y++K+ +YP KPP V F
Sbjct: 61 NTIYANEVYKIKIIFPDNYPLKPPIVYF 88
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 11 GP-QTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVN-WQ 68
GP + + G ++ L + DYP KPP + F ++I +N + +L + W
Sbjct: 40 GPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNIC----LDILKDQWS 95
Query: 69 REYTMEDILTQL 80
T+ +L +
Sbjct: 96 PALTLSKVLLSI 107
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 14 TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM 73
T G +Y + + +YP KPP V+F + V + +G + +W+ T+
Sbjct: 53 TNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNV-YPSGTICLSILNEDQDWRPAITL 111
Query: 74 EDILTQLKKEMAAPHNRKLVQPP 96
+ I+ ++ + +P+ Q P
Sbjct: 112 KQIVLGVQDLLDSPNPNSPAQEP 134
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 14 TVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM 73
T G +Y + + +YP KPP V+F + V + +G + +W+ T+
Sbjct: 51 TNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNV-YPSGTICLSILNEDQDWRPAITL 109
Query: 74 EDILTQLKKEMAAPHNRKLVQPP 96
+ I+ ++ + +P+ Q P
Sbjct: 110 KQIVLGVQDLLDSPNPNSPAQEP 132
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 7 FFFSGPQ-TVHEGRIYQLKLFCDKDYPEKPPSV 38
+ GP+ T +EG Y KL +++P KPPS+
Sbjct: 48 YVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSI 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,805,442
Number of Sequences: 62578
Number of extensions: 140164
Number of successful extensions: 464
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 363
Number of HSP's gapped (non-prelim): 100
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)