Query 033889
Match_columns 109
No_of_seqs 167 out of 1100
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:26:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 1.7E-43 3.8E-48 237.7 7.9 101 1-104 30-130 (148)
2 COG5078 Ubiquitin-protein liga 100.0 2.2E-43 4.8E-48 240.8 8.2 102 1-105 35-136 (153)
3 KOG0419 Ubiquitin-protein liga 100.0 8.6E-40 1.9E-44 215.6 7.6 101 1-104 33-133 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 9.7E-39 2.1E-43 218.7 8.8 102 1-105 31-132 (152)
5 PLN00172 ubiquitin conjugating 100.0 1.6E-38 3.5E-43 216.5 8.6 102 1-105 30-131 (147)
6 KOG0418 Ubiquitin-protein liga 100.0 3.3E-38 7.1E-43 218.6 5.9 103 2-106 36-138 (200)
7 KOG0425 Ubiquitin-protein liga 100.0 1.4E-36 3E-41 205.3 8.2 104 1-105 35-149 (171)
8 KOG0424 Ubiquitin-protein liga 100.0 1E-36 2.2E-41 203.4 7.2 104 1-105 38-141 (158)
9 KOG0421 Ubiquitin-protein liga 100.0 8.1E-36 1.8E-40 199.4 4.5 104 1-107 58-161 (175)
10 PF00179 UQ_con: Ubiquitin-con 100.0 2.4E-35 5.1E-40 198.7 6.4 103 1-105 27-129 (140)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 1.2E-33 2.7E-38 190.6 8.2 101 1-104 28-129 (141)
12 smart00212 UBCc Ubiquitin-conj 100.0 2.1E-32 4.5E-37 185.4 8.7 103 1-105 28-130 (145)
13 KOG0416 Ubiquitin-protein liga 100.0 7.8E-32 1.7E-36 184.4 5.6 103 1-105 29-132 (189)
14 KOG0426 Ubiquitin-protein liga 100.0 2.7E-31 5.8E-36 175.6 6.8 104 1-105 34-148 (165)
15 KOG0422 Ubiquitin-protein liga 100.0 6.1E-30 1.3E-34 170.1 8.9 101 1-104 32-132 (153)
16 KOG0420 Ubiquitin-protein liga 100.0 3.1E-30 6.6E-35 176.8 5.4 100 3-106 61-160 (184)
17 KOG0423 Ubiquitin-protein liga 99.9 3E-29 6.5E-34 172.5 0.7 101 3-106 41-141 (223)
18 KOG0427 Ubiquitin conjugating 99.9 4.9E-26 1.1E-30 150.5 9.2 99 1-104 43-142 (161)
19 KOG0894 Ubiquitin-protein liga 99.9 2.9E-23 6.3E-28 147.0 10.2 86 1-89 34-120 (244)
20 KOG0896 Ubiquitin-conjugating 99.9 4.8E-22 1E-26 131.6 7.9 101 1-101 38-138 (138)
21 KOG0428 Non-canonical ubiquiti 99.8 1.2E-18 2.7E-23 125.8 8.6 83 1-86 39-122 (314)
22 KOG0429 Ubiquitin-conjugating 99.7 4.3E-17 9.2E-22 116.2 6.6 101 2-105 49-154 (258)
23 KOG0895 Ubiquitin-conjugating 99.7 1.5E-16 3.2E-21 132.3 6.5 82 4-86 883-971 (1101)
24 KOG0895 Ubiquitin-conjugating 99.4 4.4E-13 9.5E-18 111.9 8.9 86 1-87 311-405 (1101)
25 PF14461 Prok-E2_B: Prokaryoti 98.6 7.8E-08 1.7E-12 64.4 5.8 67 17-86 34-106 (133)
26 KOG0897 Predicted ubiquitin-co 98.5 8.5E-08 1.8E-12 62.4 3.4 67 22-89 14-80 (122)
27 PF05743 UEV: UEV domain; Int 98.3 2.3E-06 5.1E-11 56.6 5.7 67 15-85 42-116 (121)
28 KOG2391 Vacuolar sorting prote 97.3 0.001 2.2E-08 50.9 6.4 75 12-90 59-141 (365)
29 PF05773 RWD: RWD domain; Int 95.4 0.057 1.2E-06 33.9 5.3 31 13-43 43-73 (113)
30 PF14462 Prok-E2_E: Prokaryoti 94.9 0.21 4.5E-06 33.2 7.0 70 13-85 36-120 (122)
31 PF14457 Prok-E2_A: Prokaryoti 93.8 0.11 2.5E-06 35.9 4.1 62 23-86 57-126 (162)
32 smart00591 RWD domain in RING 93.7 0.31 6.8E-06 30.3 5.7 26 18-43 40-65 (107)
33 PF08694 UFC1: Ubiquitin-fold 93.2 0.077 1.7E-06 36.2 2.3 72 4-77 50-135 (161)
34 PF06113 BRE: Brain and reprod 83.2 5.3 0.00011 30.9 6.2 60 15-83 61-123 (333)
35 cd00421 intradiol_dioxygenase 70.3 7.7 0.00017 26.1 3.6 26 17-42 64-90 (146)
36 cd03457 intradiol_dioxygenase_ 68.6 8.4 0.00018 27.2 3.6 27 17-43 85-111 (188)
37 PF14460 Prok-E2_D: Prokaryoti 63.8 13 0.00027 25.8 3.7 43 41-89 89-135 (175)
38 KOG3357 Uncharacterized conser 62.9 12 0.00025 25.3 3.2 70 4-76 53-137 (167)
39 PF03366 YEATS: YEATS family; 61.8 29 0.00064 21.2 4.7 41 1-43 1-41 (84)
40 KOG4018 Uncharacterized conser 61.0 8.5 0.00019 27.9 2.5 22 20-41 50-71 (215)
41 cd03459 3,4-PCD Protocatechuat 59.6 16 0.00035 25.1 3.6 25 18-42 72-101 (158)
42 KOG0309 Conserved WD40 repeat- 55.1 33 0.00072 29.8 5.3 38 5-43 452-491 (1081)
43 PF06113 BRE: Brain and reprod 52.2 23 0.00049 27.5 3.7 27 19-46 306-332 (333)
44 TIGR02423 protocat_alph protoc 46.0 33 0.00071 24.4 3.5 26 17-42 95-125 (193)
45 COG3866 PelB Pectate lyase [Ca 45.6 41 0.00089 26.0 4.1 40 3-43 198-241 (345)
46 cd03463 3,4-PCD_alpha Protocat 42.8 40 0.00087 23.8 3.5 25 18-42 92-121 (185)
47 TIGR03737 PRTRC_B PRTRC system 42.0 54 0.0012 24.0 4.2 37 42-85 131-171 (228)
48 KOG0177 20S proteasome, regula 41.0 13 0.00029 26.5 0.8 63 21-86 98-166 (200)
49 KOG3203 Mitochondrial/chloropl 38.4 17 0.00036 25.2 1.0 14 43-58 50-63 (165)
50 KOG1047 Bifunctional leukotrie 36.8 38 0.00083 28.2 2.9 29 14-43 248-279 (613)
51 TIGR02439 catechol_proteo cate 35.4 57 0.0012 24.7 3.5 26 17-42 179-222 (285)
52 PF09765 WD-3: WD-repeat regio 35.1 9.5 0.00021 28.8 -0.7 50 19-85 137-187 (291)
53 KOG3696 Aspartyl beta-hydroxyl 33.9 37 0.0008 26.2 2.3 38 14-51 282-325 (334)
54 KOG0744 AAA+-type ATPase [Post 33.0 20 0.00044 28.2 0.8 65 6-89 180-250 (423)
55 cd03461 1,2-HQD Hydroxyquinol 32.2 69 0.0015 24.1 3.5 26 17-42 171-214 (277)
56 KOG4445 Uncharacterized conser 31.4 61 0.0013 25.1 3.1 25 19-43 45-69 (368)
57 PF09943 DUF2175: Uncharacteri 30.8 50 0.0011 21.2 2.2 20 2-23 1-20 (101)
58 KOG0662 Cyclin-dependent kinas 30.4 64 0.0014 23.5 2.9 59 33-93 167-228 (292)
59 TIGR02438 catachol_actin catec 30.3 79 0.0017 23.9 3.5 26 17-42 183-226 (281)
60 cd03460 1,2-CTD Catechol 1,2 d 29.6 82 0.0018 23.8 3.5 26 17-42 175-218 (282)
61 cd03464 3,4-PCD_beta Protocate 27.5 97 0.0021 22.5 3.5 25 18-42 122-153 (220)
62 KOG2851 Eukaryotic-type DNA pr 27.5 62 0.0013 25.6 2.6 36 48-83 331-369 (412)
63 TIGR02465 chlorocat_1_2 chloro 26.8 1E+02 0.0022 22.8 3.6 26 17-42 149-192 (246)
64 TIGR02422 protocat_beta protoc 26.6 1E+02 0.0022 22.4 3.5 25 18-42 117-148 (220)
65 PF13950 Epimerase_Csub: UDP-g 25.9 69 0.0015 18.3 2.1 20 65-84 36-55 (62)
66 PF14455 Metal_CEHH: Predicted 25.2 1.8E+02 0.004 20.2 4.3 22 21-43 55-76 (177)
67 cd04759 Rib_hydrolase ADP-ribo 25.1 2.9E+02 0.0063 20.5 6.5 52 4-58 149-201 (242)
68 PF06468 Spond_N: Spondin_N; 25.0 1E+02 0.0023 21.8 3.3 25 20-44 3-34 (196)
69 PF04881 Adeno_GP19K: Adenovir 24.1 69 0.0015 21.6 2.0 21 4-24 50-71 (139)
70 PF15572 Imm26: Immunity prote 24.1 1E+02 0.0023 19.5 2.8 27 11-42 7-33 (96)
71 cd03458 Catechol_intradiol_dio 21.3 1.5E+02 0.0032 22.1 3.5 26 17-42 155-198 (256)
72 COG2819 Predicted hydrolase of 21.3 1.6E+02 0.0035 22.1 3.7 30 13-42 15-46 (264)
73 COG3401 Fibronectin type 3 dom 21.1 75 0.0016 24.7 2.0 18 7-24 37-54 (343)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-43 Score=237.67 Aligned_cols=101 Identities=20% Similarity=0.388 Sum_probs=97.7
Q ss_pred CeeEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCCCCCCCCCCCHHHHHHHH
Q 033889 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQL 80 (109)
Q Consensus 1 l~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~~~~W~p~~~i~~il~~i 80 (109)
|++|+++|.||.|||||||+|+++|.||++||++||+|+|.|+||||||+ +.|+||+++|+ ++|+|+++|++||++|
T Consensus 30 l~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~-~~G~IclDILk--~~WsPAl~i~~VllsI 106 (148)
T KOG0417|consen 30 LFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNID-SNGRICLDILK--DQWSPALTISKVLLSI 106 (148)
T ss_pred eeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcC-ccccchHHhhh--ccCChhhHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999 89999999999 8999999999999999
Q ss_pred HHHhhCCCCCCCCCCCCCCchhhh
Q 033889 81 KKEMAAPHNRKLVQPPEGPHHMDV 104 (109)
Q Consensus 81 ~~ll~~p~~~~~~~~~~~~~~~~~ 104 (109)
++||.+||++++..++++..|+.+
T Consensus 107 ~sLL~~PnpddPL~~~ia~~~k~d 130 (148)
T KOG0417|consen 107 CSLLSDPNPDDPLVPDIAELYKTD 130 (148)
T ss_pred HHHhcCCCCCccccHHHHHHHHhh
Confidence 999999999999999999998843
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-43 Score=240.76 Aligned_cols=102 Identities=27% Similarity=0.422 Sum_probs=99.1
Q ss_pred CeeEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCCCCCCCCCCCHHHHHHHH
Q 033889 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQL 80 (109)
Q Consensus 1 l~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~~~~W~p~~~i~~il~~i 80 (109)
|++|+++|.||++||||||+|++.|.||++||++||+|+|.|+||||||| .+|+||+++|+ ++|+|+++|++||++|
T Consensus 35 l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~-~~G~vCLdIL~--~~WsP~~~l~sILlsl 111 (153)
T COG5078 35 LFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVD-PSGNVCLDILK--DRWSPVYTLETILLSL 111 (153)
T ss_pred ceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcC-CCCCChhHHHh--CCCCccccHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999 79999999999 9999999999999999
Q ss_pred HHHhhCCCCCCCCCCCCCCchhhhh
Q 033889 81 KKEMAAPHNRKLVQPPEGPHHMDVY 105 (109)
Q Consensus 81 ~~ll~~p~~~~~~~~~~~~~~~~~~ 105 (109)
+++|.+||++++.|.+|++.|.++.
T Consensus 112 ~slL~~PN~~~Pln~daa~~~~~d~ 136 (153)
T COG5078 112 QSLLLSPNPDSPLNTEAATLYREDK 136 (153)
T ss_pred HHHHcCCCCCCCCChHHHHHHHhCH
Confidence 9999999999999999999998765
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-40 Score=215.55 Aligned_cols=101 Identities=23% Similarity=0.436 Sum_probs=97.2
Q ss_pred CeeEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCCCCCCCCCCCHHHHHHHH
Q 033889 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQL 80 (109)
Q Consensus 1 l~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~~~~W~p~~~i~~il~~i 80 (109)
+++|.++|+||.+|||+||+|++.|+|+++||.+||.|+|++++|||||+ .+|.+|+++|+ ..|+|++++.+||++|
T Consensus 33 iM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvy-a~G~iClDiLq--NrWsp~Ydva~ILtsi 109 (152)
T KOG0419|consen 33 IMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVY-ADGSICLDILQ--NRWSPTYDVASILTSI 109 (152)
T ss_pred eeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcC-CCCcchHHHHh--cCCCCchhHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999 58999999998 8999999999999999
Q ss_pred HHHhhCCCCCCCCCCCCCCchhhh
Q 033889 81 KKEMAAPHNRKLVQPPEGPHHMDV 104 (109)
Q Consensus 81 ~~ll~~p~~~~~~~~~~~~~~~~~ 104 (109)
|+||++|++++++|-+|+++|.++
T Consensus 110 QslL~dPn~~sPaN~eAA~Lf~e~ 133 (152)
T KOG0419|consen 110 QSLLNDPNPNSPANSEAARLFSEN 133 (152)
T ss_pred HHHhcCCCCCCcccHHHHHHHhhC
Confidence 999999999999999999988743
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=9.7e-39 Score=218.65 Aligned_cols=102 Identities=21% Similarity=0.386 Sum_probs=98.1
Q ss_pred CeeEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCCCCCCCCCCCHHHHHHHH
Q 033889 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQL 80 (109)
Q Consensus 1 l~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~~~~W~p~~~i~~il~~i 80 (109)
+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+ .+|.||+++|+ +.|+|++|+++||++|
T Consensus 31 ~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~-~~G~iCl~iL~--~~W~p~~ti~~iL~~i 107 (152)
T PTZ00390 31 YRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNID-KLGRICLDILK--DKWSPALQIRTVLLSI 107 (152)
T ss_pred ccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceEC-CCCeEECccCc--ccCCCCCcHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999 68999999998 8999999999999999
Q ss_pred HHHhhCCCCCCCCCCCCCCchhhhh
Q 033889 81 KKEMAAPHNRKLVQPPEGPHHMDVY 105 (109)
Q Consensus 81 ~~ll~~p~~~~~~~~~~~~~~~~~~ 105 (109)
+++|.+|+++++.+.+++.+|.+++
T Consensus 108 ~~ll~~P~~~~pln~~aa~~~~~d~ 132 (152)
T PTZ00390 108 QALLSAPEPDDPLDTSVADHFKNNR 132 (152)
T ss_pred HHHHhCCCCCCchHHHHHHHHHHCH
Confidence 9999999999999999999998764
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.6e-38 Score=216.50 Aligned_cols=102 Identities=18% Similarity=0.365 Sum_probs=98.0
Q ss_pred CeeEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCCCCCCCCCCCHHHHHHHH
Q 033889 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQL 80 (109)
Q Consensus 1 l~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~~~~W~p~~~i~~il~~i 80 (109)
+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|+||||+ .+|.||+++|+ ++|+|++++++||.+|
T Consensus 30 l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~-~~G~iCl~il~--~~W~p~~ti~~il~~i 106 (147)
T PLN00172 30 LFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNIN-SNGSICLDILR--DQWSPALTVSKVLLSI 106 (147)
T ss_pred hheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceEC-CCCEEEcccCc--CCCCCcCcHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999 69999999998 8999999999999999
Q ss_pred HHHhhCCCCCCCCCCCCCCchhhhh
Q 033889 81 KKEMAAPHNRKLVQPPEGPHHMDVY 105 (109)
Q Consensus 81 ~~ll~~p~~~~~~~~~~~~~~~~~~ 105 (109)
+++|.+|+++++.|++++..|.++.
T Consensus 107 ~~ll~~P~~~~p~n~~aa~~~~~~~ 131 (147)
T PLN00172 107 SSLLTDPNPDDPLVPEIARVFKENR 131 (147)
T ss_pred HHHHhCCCCCCchHHHHHHHHHHCH
Confidence 9999999999999999999998654
No 6
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-38 Score=218.61 Aligned_cols=103 Identities=22% Similarity=0.376 Sum_probs=94.9
Q ss_pred eeEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCCCCCCCCCCCHHHHHHHHH
Q 033889 2 VNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLK 81 (109)
Q Consensus 2 ~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~ 81 (109)
++.++.|.||+|||||||+|.++|++|++|||+||+|+|.|+||||||++.+|.||+++|+ +.|++++|++++|++||
T Consensus 36 ~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDilk--d~Wa~slTlrtvLislQ 113 (200)
T KOG0418|consen 36 KEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGAICLDILK--DQWAASLTLRTVLISLQ 113 (200)
T ss_pred hhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCcccccchhhhhh--cccchhhhHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999899999999999 99999999999999999
Q ss_pred HHhhCCCCCCCCCCCCCCchhhhhc
Q 033889 82 KEMAAPHNRKLVQPPEGPHHMDVYA 106 (109)
Q Consensus 82 ~ll~~p~~~~~~~~~~~~~~~~~~~ 106 (109)
++|+.|+++++....-++.|+++|+
T Consensus 114 alL~~pEp~dPqDavva~qy~~n~~ 138 (200)
T KOG0418|consen 114 ALLCAPEPKDPQDAVVAEQYVDNYE 138 (200)
T ss_pred HHHcCCCCCChHHHHHHHHHhhhHH
Confidence 9999999987444444778887775
No 7
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-36 Score=205.29 Aligned_cols=104 Identities=21% Similarity=0.324 Sum_probs=98.0
Q ss_pred CeeEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCC-----------CCCCCC
Q 033889 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL-----------LVNWQR 69 (109)
Q Consensus 1 l~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~-----------~~~W~p 69 (109)
+++|.+.|+||++|.||||.|+..+.||.+||.+||+++|.|++|||||+ ++|++|++||.. .+.|.|
T Consensus 35 if~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy-~~G~vCISILH~pgdD~~gyE~~~erW~P 113 (171)
T KOG0425|consen 35 IFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVY-EDGDVCISILHPPGDDPSGYELPSERWLP 113 (171)
T ss_pred eeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcC-CCCCEEEEeecCCCCCcccCCChhhccCC
Confidence 57899999999999999999999999999999999999999999999999 799999999953 257999
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCCCCCCCCchhhhh
Q 033889 70 EYTMEDILTQLKKEMAAPHNRKLVQPPEGPHHMDVY 105 (109)
Q Consensus 70 ~~~i~~il~~i~~ll~~p~~~~~~~~~~~~~~~~~~ 105 (109)
..|+++||++|.+||.+||.++++|.+|+..|.+++
T Consensus 114 v~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~ 149 (171)
T KOG0425|consen 114 VQTVETILLSIISMLNSPNDESPANVDAAKEWRENP 149 (171)
T ss_pred ccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCH
Confidence 999999999999999999999999999998888654
No 8
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-36 Score=203.43 Aligned_cols=104 Identities=20% Similarity=0.282 Sum_probs=97.9
Q ss_pred CeeEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCCCCCCCCCCCHHHHHHHH
Q 033889 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQL 80 (109)
Q Consensus 1 l~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~~~~W~p~~~i~~il~~i 80 (109)
++.|+|.|.|++||+||||.|.+++.||++||.+||+++|.++.|||||++ +|.||+++|+...+|+|+.||.+||.+|
T Consensus 38 l~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVyp-sgtVcLsiL~e~~~W~paitikqiL~gI 116 (158)
T KOG0424|consen 38 LMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYP-SGTVCLSILNEEKDWRPAITIKQILLGI 116 (158)
T ss_pred eEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCC-CCcEehhhhccccCCCchhhHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999996 8999999998444599999999999999
Q ss_pred HHHhhCCCCCCCCCCCCCCchhhhh
Q 033889 81 KKEMAAPHNRKLVQPPEGPHHMDVY 105 (109)
Q Consensus 81 ~~ll~~p~~~~~~~~~~~~~~~~~~ 105 (109)
|.||.+||..+++|.||-..|.++.
T Consensus 117 qdLL~~Pn~~~pAq~eA~~~~~~~r 141 (158)
T KOG0424|consen 117 QDLLDTPNITSPAQTEAYTIYCQDR 141 (158)
T ss_pred HHHhcCCCCCCchhhHHHHHHhhCH
Confidence 9999999999999999988887654
No 9
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-36 Score=199.43 Aligned_cols=104 Identities=23% Similarity=0.383 Sum_probs=99.3
Q ss_pred CeeEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCCCCCCCCCCCHHHHHHHH
Q 033889 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQL 80 (109)
Q Consensus 1 l~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~~~~W~p~~~i~~il~~i 80 (109)
|++|.++|.||.+|+|+|-.|++.+.||.+||++||+|+|.|+.|||||| .+|.||++||+ +.|+..+++++||++|
T Consensus 58 lf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD-~~GnIcLDILk--dKWSa~YdVrTILLSi 134 (175)
T KOG0421|consen 58 LFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVD-LSGNICLDILK--DKWSAVYDVRTILLSI 134 (175)
T ss_pred eeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcc-ccccchHHHHH--HHHHHHHhHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999 79999999999 9999999999999999
Q ss_pred HHHhhCCCCCCCCCCCCCCchhhhhcc
Q 033889 81 KKEMAAPHNRKLVQPPEGPHHMDVYAY 107 (109)
Q Consensus 81 ~~ll~~p~~~~~~~~~~~~~~~~~~~~ 107 (109)
|+||.+||++++.|..|+.++.+.-+|
T Consensus 135 QSLLGEPNn~SPLNaqAAelW~d~~ey 161 (175)
T KOG0421|consen 135 QSLLGEPNNSSPLNAQAAELWSDQEEY 161 (175)
T ss_pred HHHhCCCCCCCcchhHHHHHhcCHHHH
Confidence 999999999999999998888766554
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=2.4e-35 Score=198.69 Aligned_cols=103 Identities=23% Similarity=0.434 Sum_probs=91.1
Q ss_pred CeeEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCCCCCCCCCCCHHHHHHHH
Q 033889 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQL 80 (109)
Q Consensus 1 l~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~~~~W~p~~~i~~il~~i 80 (109)
+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|+||||+ .+|.||+++|.. +.|+|++++.+||.+|
T Consensus 27 ~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-~~G~icl~~l~~-~~W~p~~~i~~il~~i 104 (140)
T PF00179_consen 27 LFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-ENGRICLDILNP-ESWSPSYTIESILLSI 104 (140)
T ss_dssp TTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--TTSBBGHGGGTT-TTC-TTSHHHHHHHHH
T ss_pred hheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-ccccchhhhhhc-ccCCcccccccHHHHH
Confidence 46899999999999999999999999999999999999999999999999 899999999861 3599999999999999
Q ss_pred HHHhhCCCCCCCCCCCCCCchhhhh
Q 033889 81 KKEMAAPHNRKLVQPPEGPHHMDVY 105 (109)
Q Consensus 81 ~~ll~~p~~~~~~~~~~~~~~~~~~ 105 (109)
+++|.+|+.+++.+.+++..|.++.
T Consensus 105 ~~ll~~p~~~~~~n~~a~~~~~~~~ 129 (140)
T PF00179_consen 105 QSLLSEPNPEDPLNEEAAELYKNDR 129 (140)
T ss_dssp HHHHHSTCTTSTSSHHHHHHHHHCH
T ss_pred HHHHhCCCCCCcchHHHHHHHHHCH
Confidence 9999999999999999988887553
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.2e-33 Score=190.59 Aligned_cols=101 Identities=25% Similarity=0.455 Sum_probs=96.4
Q ss_pred CeeEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCCCCC-CCCCCCHHHHHHH
Q 033889 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVN-WQREYTMEDILTQ 79 (109)
Q Consensus 1 l~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~~~~-W~p~~~i~~il~~ 79 (109)
+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+ .+|.||+++|. .. |+|++++++||.+
T Consensus 28 ~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~-~~G~icl~~l~--~~~W~p~~~l~~il~~ 104 (141)
T cd00195 28 LLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD-ENGKICLSILK--THGWSPAYTLRTVLLS 104 (141)
T ss_pred hhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC-CCCCCchhhcC--CCCcCCcCcHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999 79999999987 55 9999999999999
Q ss_pred HHHHhhCCCCCCCCCCCCCCchhhh
Q 033889 80 LKKEMAAPHNRKLVQPPEGPHHMDV 104 (109)
Q Consensus 80 i~~ll~~p~~~~~~~~~~~~~~~~~ 104 (109)
|+++|.+|+.+++.|++|++.|.++
T Consensus 105 i~~~l~~p~~~~~~n~~aa~~~~~~ 129 (141)
T cd00195 105 LQSLLNEPNPSDPLNAEAAKLYKEN 129 (141)
T ss_pred HHHHHhCCCCCCchhHHHHHHHHHC
Confidence 9999999999999999999999864
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.98 E-value=2.1e-32 Score=185.37 Aligned_cols=103 Identities=21% Similarity=0.377 Sum_probs=96.4
Q ss_pred CeeEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCCCCCCCCCCCHHHHHHHH
Q 033889 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQL 80 (109)
Q Consensus 1 l~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~~~~W~p~~~i~~il~~i 80 (109)
+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+ .+|.||++.|.. ++|+|++++++||.+|
T Consensus 28 ~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~-~~G~icl~~l~~-~~W~p~~~l~~il~~i 105 (145)
T smart00212 28 LLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD-SSGEICLDILKQ-EKWSPATTLETVLLSI 105 (145)
T ss_pred hheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC-CCCCEehhhcCC-CCCCCCCcHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999 599999998742 5899999999999999
Q ss_pred HHHhhCCCCCCCCCCCCCCchhhhh
Q 033889 81 KKEMAAPHNRKLVQPPEGPHHMDVY 105 (109)
Q Consensus 81 ~~ll~~p~~~~~~~~~~~~~~~~~~ 105 (109)
+++|.+|+.+++.|++|+..|.++.
T Consensus 106 ~~~l~~p~~~~~~n~eaa~~~~~~~ 130 (145)
T smart00212 106 QSLLSEPNPDSPLNADAATLYKKNR 130 (145)
T ss_pred HHHHhCCCCCCcccHHHHHHHHHCH
Confidence 9999999999999999999887553
No 13
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.8e-32 Score=184.39 Aligned_cols=103 Identities=17% Similarity=0.344 Sum_probs=96.8
Q ss_pred CeeEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCCCCCCCCCCCHHHHHHH-
Q 033889 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQ- 79 (109)
Q Consensus 1 l~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~~~~W~p~~~i~~il~~- 79 (109)
|.+.++.+.||.+|||+||++++++++|++||++.|+|.|.++|||||||..+|.||++.++ ..|+|.+++..|+..
T Consensus 29 m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViN--QtWSp~yDL~NIfetf 106 (189)
T KOG0416|consen 29 MQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVIN--QTWSPLYDLVNIFETF 106 (189)
T ss_pred ccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHh--hhhhHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999998 999999999999864
Q ss_pred HHHHhhCCCCCCCCCCCCCCchhhhh
Q 033889 80 LKKEMAAPHNRKLVQPPEGPHHMDVY 105 (109)
Q Consensus 80 i~~ll~~p~~~~~~~~~~~~~~~~~~ 105 (109)
|-.||..||+.++.|-+|+++|+|..
T Consensus 107 LPQLL~YPNp~DPLN~eAAal~l~~~ 132 (189)
T KOG0416|consen 107 LPQLLRYPNPSDPLNGEAAALYLRDP 132 (189)
T ss_pred hHHHhcCCCCCCCcccHHHHHHhcCH
Confidence 57789999999999999999999764
No 14
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.7e-31 Score=175.64 Aligned_cols=104 Identities=18% Similarity=0.268 Sum_probs=96.8
Q ss_pred CeeEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCC-----------CCCCCC
Q 033889 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL-----------LVNWQR 69 (109)
Q Consensus 1 l~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~-----------~~~W~p 69 (109)
+++|.+.|.||++|+|+||+|..++.||.+||.+||+++|...+|||||+ .+|+||+++|.. .+.|+|
T Consensus 34 fF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy-~dG~VCISILHaPGDDP~~YEls~ERWSP 112 (165)
T KOG0426|consen 34 FFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIY-PDGRVCISILHAPGDDPMGYELSAERWSP 112 (165)
T ss_pred eeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCccc-CCCeEEEEEeeCCCCCCccchhhhhcCCh
Confidence 57899999999999999999999999999999999999999999999999 699999999854 267999
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCCCCCCCCchhhhh
Q 033889 70 EYTMEDILTQLKKEMAAPHNRKLVQPPEGPHHMDVY 105 (109)
Q Consensus 70 ~~~i~~il~~i~~ll~~p~~~~~~~~~~~~~~~~~~ 105 (109)
..+++.||+++.++|++||.++.+|-+|..++.++.
T Consensus 113 VQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R 148 (165)
T KOG0426|consen 113 VQSVEKILLSVVSMLAEPNDESGANVDACKMWREDR 148 (165)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhH
Confidence 999999999999999999999999998888877554
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.1e-30 Score=170.14 Aligned_cols=101 Identities=18% Similarity=0.325 Sum_probs=94.6
Q ss_pred CeeEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCCCCCCCCCCCHHHHHHHH
Q 033889 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQL 80 (109)
Q Consensus 1 l~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~~~~W~p~~~i~~il~~i 80 (109)
+..|++.|. |.+-||..|.|+++|.||.+|||+||+++|.|+||||||| +.|.+|+.++.. ++|.|+.++.+||++|
T Consensus 32 ll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD-e~gqvClPiis~-EnWkP~T~teqVlqaL 108 (153)
T KOG0422|consen 32 LLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD-EKGQVCLPIISA-ENWKPATRTEQVLQAL 108 (153)
T ss_pred ceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC-CCCceeeeeeec-ccccCcccHHHHHHHH
Confidence 468999997 6999999999999999999999999999999999999999 579999999854 9999999999999999
Q ss_pred HHHhhCCCCCCCCCCCCCCchhhh
Q 033889 81 KKEMAAPHNRKLVQPPEGPHHMDV 104 (109)
Q Consensus 81 ~~ll~~p~~~~~~~~~~~~~~~~~ 104 (109)
.+++.+|+++.+.+-+.+..|.++
T Consensus 109 i~liN~P~pe~plr~dlA~ey~~d 132 (153)
T KOG0422|consen 109 IALINDPEPEHPLRIDLAEEYIKD 132 (153)
T ss_pred HHHhcCCCccccchhhHHHHHHHC
Confidence 999999999999999988888764
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-30 Score=176.76 Aligned_cols=100 Identities=13% Similarity=0.241 Sum_probs=94.1
Q ss_pred eEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCCCCCCCCCCCHHHHHHHHHH
Q 033889 3 NYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKK 82 (109)
Q Consensus 3 ~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~ 82 (109)
+.+++|. |+++-|+||.|+|++.+|+.||+.||+|+|+|+||||||| .+|.||++||. ++|+|+.++.+|+.+|+.
T Consensus 61 ~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId-~~GnVCLnILR--edW~P~lnL~sIi~GL~~ 136 (184)
T KOG0420|consen 61 EFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNID-LDGNVCLNILR--EDWRPVLNLNSIIYGLQF 136 (184)
T ss_pred eEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcC-CcchHHHHHHH--hcCccccchHHHHHHHHH
Confidence 3566775 8999999999999999999999999999999999999999 79999999998 999999999999999999
Q ss_pred HhhCCCCCCCCCCCCCCchhhhhc
Q 033889 83 EMAAPHNRKLVQPPEGPHHMDVYA 106 (109)
Q Consensus 83 ll~~p~~~~~~~~~~~~~~~~~~~ 106 (109)
|+.+|+++++.|-+|++.+.++++
T Consensus 137 LF~epn~eDpLN~eAA~~l~~n~e 160 (184)
T KOG0420|consen 137 LFLEPNPEDPLNKEAAAVLKSNRE 160 (184)
T ss_pred HhccCCCcccccHHHHHHHHhCHH
Confidence 999999999999999999887654
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3e-29 Score=172.47 Aligned_cols=101 Identities=18% Similarity=0.319 Sum_probs=96.6
Q ss_pred eEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCCCCCCCCCCCHHHHHHHHHH
Q 033889 3 NYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKK 82 (109)
Q Consensus 3 ~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~ 82 (109)
...+.|.||.||||++|.|++++.+..|||.+||+-.|+|+||||||- .+|.||.+.|+ .+|+|...|+.||..|++
T Consensus 41 diqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa-aNGEICVNtLK--kDW~p~LGirHvLltikC 117 (223)
T KOG0423|consen 41 DIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA-ANGEICVNTLK--KDWNPSLGIRHVLLTIKC 117 (223)
T ss_pred HHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc-cCceehhhhhh--cccCcccchhhHhhhhhe
Confidence 356789999999999999999999999999999999999999999999 79999999998 999999999999999999
Q ss_pred HhhCCCCCCCCCCCCCCchhhhhc
Q 033889 83 EMAAPHNRKLVQPPEGPHHMDVYA 106 (109)
Q Consensus 83 ll~~p~~~~~~~~~~~~~~~~~~~ 106 (109)
+|-.|++++..|.++|.+.+++|.
T Consensus 118 LLI~PnPESALNEeAGkmLLEnYd 141 (223)
T KOG0423|consen 118 LLIEPNPESALNEEAGKMLLENYD 141 (223)
T ss_pred eeecCChHHHHhHHHHHHHHHhHH
Confidence 999999999999999999988874
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.9e-26 Score=150.45 Aligned_cols=99 Identities=13% Similarity=0.281 Sum_probs=91.7
Q ss_pred CeeEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeeee-ecCCccCCCceEecccCCCCCCCCCCCCHHHHHHH
Q 033889 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI-NMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQ 79 (109)
Q Consensus 1 l~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~i-~HpnV~~~~G~ic~~~l~~~~~W~p~~~i~~il~~ 79 (109)
|.+|.+-+.|.+||.|+|.+|++.++||+.||++.|.|.|..++ .||+|+ ++|.||+++|- +.|+|++++.+|+++
T Consensus 43 lqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY-SNGHICL~iL~--d~WsPAmsv~SvClS 119 (161)
T KOG0427|consen 43 LQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY-SNGHICLDILY--DSWSPAMSVQSVCLS 119 (161)
T ss_pred hheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee-cCCeEEEEeec--ccCCcchhhHHHHHH
Confidence 46899999999999999999999999999999999999999875 899999 79999999998 999999999999999
Q ss_pred HHHHhhCCCCCCCCCCCCCCchhhh
Q 033889 80 LKKEMAAPHNRKLVQPPEGPHHMDV 104 (109)
Q Consensus 80 i~~ll~~p~~~~~~~~~~~~~~~~~ 104 (109)
|.++|.+-..++ +|.+++.|+|+
T Consensus 120 IlSMLSSs~eKq--rP~Dn~~Yvk~ 142 (161)
T KOG0427|consen 120 ILSMLSSSKEKQ--RPTDNDRYVKN 142 (161)
T ss_pred HHHHHccCcccc--CCCccchhhhh
Confidence 999998855554 78899999876
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.9e-23 Score=146.98 Aligned_cols=86 Identities=19% Similarity=0.240 Sum_probs=75.9
Q ss_pred CeeEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCCC-CCCCCCCCHHHHHHH
Q 033889 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLL-VNWQREYTMEDILTQ 79 (109)
Q Consensus 1 l~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~~-~~W~p~~~i~~il~~ 79 (109)
+++||.+|.||++|||+||.|+.+|.||++||++||.|+++|+- .....+-++|+++-+.+ +.|+|.|++++||.+
T Consensus 34 ILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPN---GRFktntRLCLSiSDfHPdsWNP~WsVStILtG 110 (244)
T KOG0894|consen 34 ILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPN---GRFKTNTRLCLSISDFHPDSWNPGWSVSTILTG 110 (244)
T ss_pred eeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCC---CceecCceEEEeccccCcCcCCCcccHHHHHHH
Confidence 57999999999999999999999999999999999999999971 12224578999998776 899999999999999
Q ss_pred HHHHhhCCCC
Q 033889 80 LKKEMAAPHN 89 (109)
Q Consensus 80 i~~ll~~p~~ 89 (109)
|.++|.+-.+
T Consensus 111 LlSFM~e~~p 120 (244)
T KOG0894|consen 111 LLSFMTEDSP 120 (244)
T ss_pred HHHHHhcCCC
Confidence 9999987443
No 20
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.8e-22 Score=131.59 Aligned_cols=101 Identities=46% Similarity=0.835 Sum_probs=95.3
Q ss_pred CeeEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCCCCCCCCCCCHHHHHHHH
Q 033889 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQL 80 (109)
Q Consensus 1 l~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~~~~W~p~~~i~~il~~i 80 (109)
|..|.+.|.||+.|+||+.+|.++|.+.++||..||+|+|.++|....|+..+|.|....+..+.+|+..++++.+|.++
T Consensus 38 l~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~l 117 (138)
T KOG0896|consen 38 LTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQL 117 (138)
T ss_pred EeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccchhhcccccchhhHHHHhh
Confidence 46899999999999999999999999999999999999999999999999889999887776679999999999999999
Q ss_pred HHHhhCCCCCCCCCCCCCCch
Q 033889 81 KKEMAAPHNRKLVQPPEGPHH 101 (109)
Q Consensus 81 ~~ll~~p~~~~~~~~~~~~~~ 101 (109)
+.+|....+.+++||++|++|
T Consensus 118 r~~m~~~eN~kl~qp~eg~~~ 138 (138)
T KOG0896|consen 118 RKEMMSKENRKLPQPPEGQCF 138 (138)
T ss_pred hHHHHHHHhhcccCCCCCCcC
Confidence 999999999999999999875
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.2e-18 Score=125.80 Aligned_cols=83 Identities=23% Similarity=0.316 Sum_probs=72.9
Q ss_pred CeeEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCCC-CCCCCCCCHHHHHHH
Q 033889 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLL-VNWQREYTMEDILTQ 79 (109)
Q Consensus 1 l~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~~-~~W~p~~~i~~il~~ 79 (109)
|++|+.+|.||.||-||||+|+.+|.||.+||++||.+..+|+- .....+-.||+++-+-+ +.|.|+|+|++.|++
T Consensus 39 lFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpN---GRFE~nkKiCLSISgyHPEtWqPSWSiRTALlA 115 (314)
T KOG0428|consen 39 LFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPN---GRFEVNKKICLSISGYHPETWQPSWSIRTALLA 115 (314)
T ss_pred eeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCC---CceeeCceEEEEecCCCccccCcchhHHHHHHH
Confidence 68999999999999999999999999999999999999999861 12324668999997655 899999999999999
Q ss_pred HHHHhhC
Q 033889 80 LKKEMAA 86 (109)
Q Consensus 80 i~~ll~~ 86 (109)
|..+|-.
T Consensus 116 lIgFmPt 122 (314)
T KOG0428|consen 116 LIGFMPT 122 (314)
T ss_pred HHccccC
Confidence 9999843
No 22
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=4.3e-17 Score=116.15 Aligned_cols=101 Identities=14% Similarity=0.355 Sum_probs=87.3
Q ss_pred eeEEEEEEcCCCCCCCCcEEEEEEEeCCCCCC--CCCeeEEeeeeecCCccCCCceEecccCCCCCCCCCC-CCHHHHHH
Q 033889 2 VNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPE--KPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQRE-YTMEDILT 78 (109)
Q Consensus 2 ~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~--~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~~~~W~p~-~~i~~il~ 78 (109)
+.|.++|++ ..+.|.||+|+|+|.+|++||. +-|+|.|.+.++||.|.+.++.+|++-. +..|... ..|.+||.
T Consensus 49 l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~ra--f~eWRk~ehhiwqvL~ 125 (258)
T KOG0429|consen 49 LLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRA--FPEWRKEEHHIWQVLV 125 (258)
T ss_pred ceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhh--hhhhhccccHHHHHHH
Confidence 579999999 5567999999999999999995 4799999999999999999999998763 3679765 56999999
Q ss_pred HHHHHhhCCCCCC--CCCCCCCCchhhhh
Q 033889 79 QLKKEMAAPHNRK--LVQPPEGPHHMDVY 105 (109)
Q Consensus 79 ~i~~ll~~p~~~~--~~~~~~~~~~~~~~ 105 (109)
.||..+.+|+.+. ..||+|..+|++..
T Consensus 126 ylqriF~dpd~si~kl~N~eAa~l~~k~r 154 (258)
T KOG0429|consen 126 YLQRIFYDPDVSIDKLINPEAAVLYKKHR 154 (258)
T ss_pred HHHHHhcCcccchhhhcChHHHHHHHHhH
Confidence 9999999999653 45999998888653
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.5e-16 Score=132.27 Aligned_cols=82 Identities=17% Similarity=0.282 Sum_probs=74.7
Q ss_pred EEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeee--eecCCccCCCceEecccCCCC-----CCCCCCCCHHHH
Q 033889 4 YFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR--INMTCVNHETGVVEPKKFGLL-----VNWQREYTMEDI 76 (109)
Q Consensus 4 W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~--i~HpnV~~~~G~ic~~~l~~~-----~~W~p~~~i~~i 76 (109)
.+++|.||.||||.+|.|.|+|.||++||.+||.|...+- .++||.+ .+|+||+++|++. +.|+|+.+|.+|
T Consensus 883 ~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly-~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~ 961 (1101)
T KOG0895|consen 883 LRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLY-EDGKVCLSLLNTWHGRGNEVWNPSSSILQV 961 (1101)
T ss_pred HHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccc-cccceehhhhccccCCCccccCcchhHHHH
Confidence 3578999999999999999999999999999999999875 5899999 7999999999873 679999999999
Q ss_pred HHHHHHHhhC
Q 033889 77 LTQLKKEMAA 86 (109)
Q Consensus 77 l~~i~~ll~~ 86 (109)
|.+||.|..+
T Consensus 962 l~s~q~l~l~ 971 (1101)
T KOG0895|consen 962 LVSIQGLVLN 971 (1101)
T ss_pred HHHhhhhhcc
Confidence 9999998744
No 24
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4.4e-13 Score=111.92 Aligned_cols=86 Identities=14% Similarity=0.239 Sum_probs=77.7
Q ss_pred CeeEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeee---eecCCccCCCceEecccCCCC-----CCCCCC-C
Q 033889 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR---INMTCVNHETGVVEPKKFGLL-----VNWQRE-Y 71 (109)
Q Consensus 1 l~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~---i~HpnV~~~~G~ic~~~l~~~-----~~W~p~-~ 71 (109)
|...+++|.||.||||++|+|.|+|.||..||..||.|+++|. .+.||.+ .+|+||+++|.+. +.|++. .
T Consensus 311 Md~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlY-n~GKVcLslLgTwtg~~~e~wtp~~~ 389 (1101)
T KOG0895|consen 311 MDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLY-NDGKVCLSLLGTWTGSRREKWTPNGS 389 (1101)
T ss_pred cceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcc-cCceEEeeeeeecccccccCCCcccc
Confidence 3467899999999999999999999999999999999999987 6889999 6999999998663 679988 8
Q ss_pred CHHHHHHHHHHHhhCC
Q 033889 72 TMEDILTQLKKEMAAP 87 (109)
Q Consensus 72 ~i~~il~~i~~ll~~p 87 (109)
++.++|.+||.++.+-
T Consensus 390 sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 390 SLLQVLESIQGLILNE 405 (1101)
T ss_pred chhhhhhhhhhhhccc
Confidence 8999999999998765
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.64 E-value=7.8e-08 Score=64.36 Aligned_cols=67 Identities=21% Similarity=0.326 Sum_probs=58.8
Q ss_pred CCcEEEEEEEeCCCCCCCCCeeEEeeee---ecCCccCCCceEec---ccCCCCCCCCCCCCHHHHHHHHHHHhhC
Q 033889 17 EGRIYQLKLFCDKDYPEKPPSVRFHSRI---NMTCVNHETGVVEP---KKFGLLVNWQREYTMEDILTQLKKEMAA 86 (109)
Q Consensus 17 ~gg~f~~~i~f~~~YP~~pP~v~f~t~i---~HpnV~~~~G~ic~---~~l~~~~~W~p~~~i~~il~~i~~ll~~ 86 (109)
.|+.+.++|.+|++||..||.|....+. +-|+|+ .+|.+|+ ...- +.|.|.-.+.++|.+++.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~-~~G~LCl~~~~~~~--D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVE-SDGKLCLLDEELVL--DPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEc-CCCeEEEecCCccc--CccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988654 679999 5999999 4433 8999999999999999999974
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=8.5e-08 Score=62.38 Aligned_cols=67 Identities=18% Similarity=0.285 Sum_probs=53.6
Q ss_pred EEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCCCCCCCCCCCHHHHHHHHHHHhhCCCC
Q 033889 22 QLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHN 89 (109)
Q Consensus 22 ~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~ll~~p~~ 89 (109)
-+.+.|+++||+.||.++...+.-.-.---.+|.||+.+|. -+.|+.+++++.++++|...+..-..
T Consensus 14 ll~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt-~qgwssay~Ve~vi~qiaatlVkG~~ 80 (122)
T KOG0897|consen 14 LLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT-KQGWSSAYEVERVIMQIAATLVKGGA 80 (122)
T ss_pred EeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc-cccccchhhHHHHHHHHHHHhhccce
Confidence 35678999999999999988775433322257999999985 38999999999999999999876443
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.28 E-value=2.3e-06 Score=56.55 Aligned_cols=67 Identities=21% Similarity=0.422 Sum_probs=46.9
Q ss_pred CCCCcEEE--EEEEeCCCCCCCCCeeEEeeee-----ecCCccCCCceEecccCCCCCCCCC-CCCHHHHHHHHHHHhh
Q 033889 15 VHEGRIYQ--LKLFCDKDYPEKPPSVRFHSRI-----NMTCVNHETGVVEPKKFGLLVNWQR-EYTMEDILTQLKKEMA 85 (109)
Q Consensus 15 py~gg~f~--~~i~f~~~YP~~pP~v~f~t~i-----~HpnV~~~~G~ic~~~l~~~~~W~p-~~~i~~il~~i~~ll~ 85 (109)
.|+|..|. +.|-+|.+||.+||.+...... -+.+|| .+|+|.+..| ++|+. ..++.+++..+++.+.
T Consensus 42 ~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd-~~G~v~~pyL---~~W~~~~s~L~~lv~~l~~~F~ 116 (121)
T PF05743_consen 42 TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVD-SNGRVYLPYL---QNWNPPSSNLVDLVQELQAVFS 116 (121)
T ss_dssp CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB--TTSBB-SHHH---HT--TTTS-HHHHHHHHHHCCC
T ss_pred ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeEC-CCCCEeCchh---ccCCCCCCCHHHHHHHHHHHHh
Confidence 58888886 5566899999999999776331 134899 6999998887 68987 7889999888887764
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.001 Score=50.86 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=58.5
Q ss_pred CCCCCCCcEEEEEEE--eCCCCCCCCCeeEEeee-----eecCCccCCCceEecccCCCCCCCC-CCCCHHHHHHHHHHH
Q 033889 12 PQTVHEGRIYQLKLF--CDKDYPEKPPSVRFHSR-----INMTCVNHETGVVEPKKFGLLVNWQ-REYTMEDILTQLKKE 83 (109)
Q Consensus 12 ~~tpy~gg~f~~~i~--f~~~YP~~pP~v~f~t~-----i~HpnV~~~~G~ic~~~l~~~~~W~-p~~~i~~il~~i~~l 83 (109)
--++|.|..|.+=|. +.+.||..||.+....- --|-+|| .+|.|.+..|+ +|. |++++..++..+.+.
T Consensus 59 Ip~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd-~nG~V~LPYLh---~W~~pssdLv~Liq~l~a~ 134 (365)
T KOG2391|consen 59 IPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVD-PNGKVYLPYLH---NWDPPSSDLVGLIQELIAA 134 (365)
T ss_pred ccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccC-CCCeEechhhc---cCCCccchHHHHHHHHHHH
Confidence 345799988886555 69999999999865421 1288999 69999999884 896 677899999999998
Q ss_pred hhCCCCC
Q 033889 84 MAAPHNR 90 (109)
Q Consensus 84 l~~p~~~ 90 (109)
+.++.+.
T Consensus 135 f~~~pP~ 141 (365)
T KOG2391|consen 135 FSEDPPV 141 (365)
T ss_pred hcCCCcc
Confidence 8775543
No 29
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.37 E-value=0.057 Score=33.92 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=22.7
Q ss_pred CCCCCCcEEEEEEEeCCCCCCCCCeeEEeee
Q 033889 13 QTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR 43 (109)
Q Consensus 13 ~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~ 43 (109)
.+.-....+.+.+.||++||..+|.+...+.
T Consensus 43 ~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 43 FESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp CTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred cccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 3445567899999999999999999987765
No 30
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=94.94 E-value=0.21 Score=33.18 Aligned_cols=70 Identities=10% Similarity=0.162 Sum_probs=46.5
Q ss_pred CCCCCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceE--ecccCCC------------CCCCCCCCC-HHHHH
Q 033889 13 QTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV--EPKKFGL------------LVNWQREYT-MEDIL 77 (109)
Q Consensus 13 ~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~i--c~~~l~~------------~~~W~p~~~-i~~il 77 (109)
.+.|....-.+-|.+|+.||..+|.+.+..+-.... + .|.| |.+.... ...|.|..+ +.+.|
T Consensus 36 ~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~-~--G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~P~~D~l~T~l 112 (122)
T PF14462_consen 36 EGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA-D--GGPIPNAAEVTQTFDGRTWQRWSRHNNPWRPGVDDLWTHL 112 (122)
T ss_pred CCccCccceEEEEECCCCCCCCCCCcEEECCceEcc-C--CCcCCchhcchhhcCCeeeeeecCCCCCCCCCCCcHHHHH
Confidence 445888999999999999999999887765532211 1 2333 3322111 256887654 88888
Q ss_pred HHHHHHhh
Q 033889 78 TQLKKEMA 85 (109)
Q Consensus 78 ~~i~~ll~ 85 (109)
..|...|.
T Consensus 113 ~~v~~~L~ 120 (122)
T PF14462_consen 113 ARVEHALA 120 (122)
T ss_pred HHHHHHHh
Confidence 88887764
No 31
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=93.85 E-value=0.11 Score=35.94 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=47.2
Q ss_pred EEEEeCCCCCCCCCeeEEeeeee---cCCccCCC-----ceEecccCCCCCCCCCCCCHHHHHHHHHHHhhC
Q 033889 23 LKLFCDKDYPEKPPSVRFHSRIN---MTCVNHET-----GVVEPKKFGLLVNWQREYTMEDILTQLKKEMAA 86 (109)
Q Consensus 23 ~~i~f~~~YP~~pP~v~f~t~i~---HpnV~~~~-----G~ic~~~l~~~~~W~p~~~i~~il~~i~~ll~~ 86 (109)
+.|.|+.+||..+|.|.+.-+.| +|++.+ . ..+|+--- ....|.+..++..+|..|..-|.+
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~-~~~~~p~~lCl~~~-~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNP-GPEGEPVSLCLYEG-PWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCC-CCCCCCccceEecC-CHHHhhhccCHHHHHHHHHHHHHH
Confidence 56889999999999877765433 466652 3 67998542 237789999999999999998854
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=93.70 E-value=0.31 Score=30.25 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=21.9
Q ss_pred CcEEEEEEEeCCCCCCCCCeeEEeee
Q 033889 18 GRIYQLKLFCDKDYPEKPPSVRFHSR 43 (109)
Q Consensus 18 gg~f~~~i~f~~~YP~~pP~v~f~t~ 43 (109)
.-.+.+.+.+|++||..+|.+.+.+.
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEECC
Confidence 35588999999999999999988753
No 33
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=93.20 E-value=0.077 Score=36.16 Aligned_cols=72 Identities=14% Similarity=0.242 Sum_probs=31.9
Q ss_pred EEEEEEcCCCCCCCCcE----------EEEEEEeCCCCCCCCCeeEEeeeeec-CCccCCCceEecccCCCCCCC---CC
Q 033889 4 YFPFFFSGPQTVHEGRI----------YQLKLFCDKDYPEKPPSVRFHSRINM-TCVNHETGVVEPKKFGLLVNW---QR 69 (109)
Q Consensus 4 W~~~i~Gp~~tpy~gg~----------f~~~i~f~~~YP~~pP~v~f~t~i~H-pnV~~~~G~ic~~~l~~~~~W---~p 69 (109)
|.-.=.-++||-|.|.. |.+++.+|..||..||.+..-.---. .-.+ ..|+||++.= +..-| .|
T Consensus 50 WF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLdGKTaKMY-RGGkIClt~H-FkPLWakN~P 127 (161)
T PF08694_consen 50 WFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPELDGKTAKMY-RGGKICLTDH-FKPLWAKNVP 127 (161)
T ss_dssp -EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGGTTT-SSBC-CCCBB---TT-HHHHHHCTTT
T ss_pred eEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceeccccCCchhhhh-cCceEeeecc-cchhhhhcCC
Confidence 44444456667666632 44566679999999999876321000 1134 5799998751 11445 46
Q ss_pred CCCHHHHH
Q 033889 70 EYTMEDIL 77 (109)
Q Consensus 70 ~~~i~~il 77 (109)
.+.|...|
T Consensus 128 kfGIaHal 135 (161)
T PF08694_consen 128 KFGIAHAL 135 (161)
T ss_dssp T--HHHHH
T ss_pred chhHHHHH
Confidence 67776654
No 34
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=83.23 E-value=5.3 Score=30.86 Aligned_cols=60 Identities=20% Similarity=0.402 Sum_probs=41.7
Q ss_pred CCCCcEEEEEEEeCCCCCCCCCeeEEee-eeecCCccCCCceEecccCCCCCCCCCCCC--HHHHHHHHHHH
Q 033889 15 VHEGRIYQLKLFCDKDYPEKPPSVRFHS-RINMTCVNHETGVVEPKKFGLLVNWQREYT--MEDILTQLKKE 83 (109)
Q Consensus 15 py~gg~f~~~i~f~~~YP~~pP~v~f~t-~i~HpnV~~~~G~ic~~~l~~~~~W~p~~~--i~~il~~i~~l 83 (109)
||.|...+-+|.|...+|..||.+.|.. .-|+|..+ .+ ..| .+|+..-. +..++..++.+
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s----~l--~~L---~~Wd~~dp~~Ll~li~EL~~~ 123 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS----KL--PSL---VNWDPSDPNCLLNLISELRQL 123 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh----hc--chh---hcCCCCCchHHHHHHHHHHHH
Confidence 7888888889999999999999999973 33666321 21 223 68987643 55566555544
No 35
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=70.28 E-value=7.7 Score=26.06 Aligned_cols=26 Identities=23% Similarity=0.612 Sum_probs=23.1
Q ss_pred CCcEEEEEEEeCCCCC-CCCCeeEEee
Q 033889 17 EGRIYQLKLFCDKDYP-EKPPSVRFHS 42 (109)
Q Consensus 17 ~gg~f~~~i~f~~~YP-~~pP~v~f~t 42 (109)
+.|.|.|.-..|-.|| ..||.|.|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 3489999999999999 9999999974
No 36
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=68.56 E-value=8.4 Score=27.24 Aligned_cols=27 Identities=11% Similarity=0.292 Sum_probs=23.8
Q ss_pred CCcEEEEEEEeCCCCCCCCCeeEEeee
Q 033889 17 EGRIYQLKLFCDKDYPEKPPSVRFHSR 43 (109)
Q Consensus 17 ~gg~f~~~i~f~~~YP~~pP~v~f~t~ 43 (109)
+.|.|+|+=.+|--||.++|.|.|.-.
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V~ 111 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKVH 111 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEEE
Confidence 458999999999999999999999743
No 37
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=63.78 E-value=13 Score=25.85 Aligned_cols=43 Identities=9% Similarity=0.010 Sum_probs=24.8
Q ss_pred eeeeec---CCccCCCceEecccCCCCCCCCCCCCHHHHHHHHH-HHhhCCCC
Q 033889 41 HSRINM---TCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLK-KEMAAPHN 89 (109)
Q Consensus 41 ~t~i~H---pnV~~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~-~ll~~p~~ 89 (109)
.|+.|| +||. .+|+||..... .|.....+.+.... .++.++..
T Consensus 89 ~T~Ly~aPf~NV~-~~g~vC~G~~~-----~P~~~~~~~i~~we~~Ff~S~ft 135 (175)
T PF14460_consen 89 DTPLYHAPFFNVY-SNGSVCWGNNS-----LPKISTLASIEAWEDAFFNSPFT 135 (175)
T ss_pred CCeeEeCCccccC-CCCcEeeCCCc-----CCCccCHHHHHHHHHHHhCCCcc
Confidence 455666 6999 68999976533 23333334445553 45555543
No 38
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.88 E-value=12 Score=25.33 Aligned_cols=70 Identities=13% Similarity=0.245 Sum_probs=40.5
Q ss_pred EEEEEEcCCCCCCCCc----------EEEEEEEeCCCCCCCCCeeEEeeeeec-CCccCCCceEeccc-CCCCCCCC---
Q 033889 4 YFPFFFSGPQTVHEGR----------IYQLKLFCDKDYPEKPPSVRFHSRINM-TCVNHETGVVEPKK-FGLLVNWQ--- 68 (109)
Q Consensus 4 W~~~i~Gp~~tpy~gg----------~f~~~i~f~~~YP~~pP~v~f~t~i~H-pnV~~~~G~ic~~~-l~~~~~W~--- 68 (109)
|.-.=..++||-|-|. .|.+++.+|-.||-.+|.+..-.---. --.+ ..|.||+.. ++ .-|.
T Consensus 53 wfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgktakmy-rggkiclt~hfk--plwarn~ 129 (167)
T KOG3357|consen 53 WFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGKTAKMY-RGGKICLTDHFK--PLWARNV 129 (167)
T ss_pred ceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCchhhhhh-cCceEeeccccc--hhhhhcC
Confidence 4444456677777764 244556669999999998764311000 0123 479999853 22 5574
Q ss_pred CCCCHHHH
Q 033889 69 REYTMEDI 76 (109)
Q Consensus 69 p~~~i~~i 76 (109)
|.+.|...
T Consensus 130 pkfgiaha 137 (167)
T KOG3357|consen 130 PKFGIAHA 137 (167)
T ss_pred cchhHHHH
Confidence 44555544
No 39
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=61.79 E-value=29 Score=21.23 Aligned_cols=41 Identities=7% Similarity=0.022 Sum_probs=28.1
Q ss_pred CeeEEEEEEcCCCCCCCCcEEEEEEEeCCCCCCCCCeeEEeee
Q 033889 1 MVNYFPFFFSGPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR 43 (109)
Q Consensus 1 l~~W~~~i~Gp~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t~ 43 (109)
.++|.+-+.|+.+.--..-+=++...+.+.|+. |...+..+
T Consensus 1 th~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 1 THKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp -EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred CcEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 368999999999875566677888888888875 55555544
No 40
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=61.01 E-value=8.5 Score=27.92 Aligned_cols=22 Identities=18% Similarity=0.470 Sum_probs=19.1
Q ss_pred EEEEEEEeCCCCCCCCCeeEEe
Q 033889 20 IYQLKLFCDKDYPEKPPSVRFH 41 (109)
Q Consensus 20 ~f~~~i~f~~~YP~~pP~v~f~ 41 (109)
.+.+.+.++.+||..+|-+.+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred cEEEEEEccCCCCCCCcceecc
Confidence 7889999999999999999443
No 41
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=59.64 E-value=16 Score=25.07 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=22.4
Q ss_pred CcEEEEEEEeCCCCC-----CCCCeeEEee
Q 033889 18 GRIYQLKLFCDKDYP-----EKPPSVRFHS 42 (109)
Q Consensus 18 gg~f~~~i~f~~~YP-----~~pP~v~f~t 42 (109)
.|.|.|+-.+|--|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 488999999999999 8999999974
No 42
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=55.08 E-value=33 Score=29.79 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=26.2
Q ss_pred EEEEEcCCCCCCCCcEE-EEEEEeCCCCCCC-CCeeEEeee
Q 033889 5 FPFFFSGPQTVHEGRIY-QLKLFCDKDYPEK-PPSVRFHSR 43 (109)
Q Consensus 5 ~~~i~Gp~~tpy~gg~f-~~~i~f~~~YP~~-pP~v~f~t~ 43 (109)
.+.+.||-. +=+|-+| ++.|.||.+||.+ +|+++|..+
T Consensus 452 tvsln~p~~-~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 452 TVSLNCPNH-RVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred EEEecCCCC-ccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 345555432 2344444 7889999999986 689999754
No 43
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=52.18 E-value=23 Score=27.45 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=22.2
Q ss_pred cEEEEEEEeCCCCCCCCCeeEEeeeeec
Q 033889 19 RIYQLKLFCDKDYPEKPPSVRFHSRINM 46 (109)
Q Consensus 19 g~f~~~i~f~~~YP~~pP~v~f~t~i~H 46 (109)
-.|-+.|.+|..||...|.++|.+- ||
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS~-yH 332 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQSV-YH 332 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEee-cc
Confidence 3466788899999999999999863 55
No 44
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=45.98 E-value=33 Score=24.37 Aligned_cols=26 Identities=12% Similarity=0.299 Sum_probs=22.0
Q ss_pred CCcEEEEEEEeCCCCCC-----CCCeeEEee
Q 033889 17 EGRIYQLKLFCDKDYPE-----KPPSVRFHS 42 (109)
Q Consensus 17 ~gg~f~~~i~f~~~YP~-----~pP~v~f~t 42 (109)
+.|.|.|+-..|-.||. .||.|.|.-
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~V 125 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVSV 125 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 34889999999999998 889888863
No 45
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=45.60 E-value=41 Score=26.01 Aligned_cols=40 Identities=13% Similarity=0.285 Sum_probs=30.2
Q ss_pred eEEEEEEcCCCC-CCCCcEEEEEEE---eCCCCCCCCCeeEEeee
Q 033889 3 NYFPFFFSGPQT-VHEGRIYQLKLF---CDKDYPEKPPSVRFHSR 43 (109)
Q Consensus 3 ~W~~~i~Gp~~t-py~gg~f~~~i~---f~~~YP~~pP~v~f~t~ 43 (109)
+|+..+.|-.++ -|++|.+++++. |..-+ .+.|+|||-.-
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~-qR~PriRfG~v 241 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY-QRGPRIRFGMV 241 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEecccccccc-ccCCceEeeEE
Confidence 688999999888 888999998876 43333 35679999643
No 46
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=42.81 E-value=40 Score=23.77 Aligned_cols=25 Identities=8% Similarity=0.197 Sum_probs=21.0
Q ss_pred CcEEEEEEEeCCCCCC-----CCCeeEEee
Q 033889 18 GRIYQLKLFCDKDYPE-----KPPSVRFHS 42 (109)
Q Consensus 18 gg~f~~~i~f~~~YP~-----~pP~v~f~t 42 (109)
.|.|.|.-.+|--||. .||.|.|.-
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~V 121 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVWV 121 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 3889999999999995 888888863
No 47
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=41.97 E-value=54 Score=24.03 Aligned_cols=37 Identities=8% Similarity=0.096 Sum_probs=22.2
Q ss_pred eeeec---CCccCCCceEecccCCCCCCCCCC-CCHHHHHHHHHHHhh
Q 033889 42 SRINM---TCVNHETGVVEPKKFGLLVNWQRE-YTMEDILTQLKKEMA 85 (109)
Q Consensus 42 t~i~H---pnV~~~~G~ic~~~l~~~~~W~p~-~~i~~il~~i~~ll~ 85 (109)
|+.|| .||+ ++|+||+.... .|. .++.+ +......+.
T Consensus 131 T~L~~aPffNV~-~~G~VC~G~~~-----~P~~~~~~~-i~~we~~FF 171 (228)
T TIGR03737 131 TKLYQAPLFNVW-SNGEICAGNAR-----LPDRPTVAN-ISAWEDAFF 171 (228)
T ss_pred CeeccCCcCccC-CCCeEeeCCCc-----CCCCcCHHH-HHHHHHHHh
Confidence 44555 5898 68999975432 333 34555 666655543
No 48
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=41.00 E-value=13 Score=26.55 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=39.8
Q ss_pred EEEEEEeCCCCCCCCCeeEEeee------eecCCccCCCceEecccCCCCCCCCCCCCHHHHHHHHHHHhhC
Q 033889 21 YQLKLFCDKDYPEKPPSVRFHSR------INMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAA 86 (109)
Q Consensus 21 f~~~i~f~~~YP~~pP~v~f~t~------i~HpnV~~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~ll~~ 86 (109)
|++.+.+---=|.+-|...++.- +-+..-- -.+..|+++++ ..|+|.+|+++.+.-++.++.+
T Consensus 98 yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hG-y~~~f~~sIlD--r~Y~pdmt~eea~~lmkKCv~E 166 (200)
T KOG0177|consen 98 YQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHG-YGSYFCLSILD--RYYKPDMTIEEALDLMKKCVLE 166 (200)
T ss_pred ceEEEEEeccCCCCCCceeeehhhhhcccCCccccc-chhhhhHHHHH--hhhCCCCCHHHHHHHHHHHHHH
Confidence 45555554333445566666532 2111111 25689999998 8999999999988777666544
No 49
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=38.44 E-value=17 Score=25.22 Aligned_cols=14 Identities=14% Similarity=0.010 Sum_probs=11.2
Q ss_pred eeecCCccCCCceEec
Q 033889 43 RINMTCVNHETGVVEP 58 (109)
Q Consensus 43 ~i~HpnV~~~~G~ic~ 58 (109)
++|||+.| .|.+|.
T Consensus 50 PiYhP~~D--cGD~VV 63 (165)
T KOG3203|consen 50 PIYHPSTD--CGDHVV 63 (165)
T ss_pred CccCCccC--CCCEEE
Confidence 69999999 577664
No 50
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=36.77 E-value=38 Score=28.19 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=24.1
Q ss_pred CCCCCcEEEEEEEeCCCCCCC---CCeeEEeee
Q 033889 14 TVHEGRIYQLKLFCDKDYPEK---PPSVRFHSR 43 (109)
Q Consensus 14 tpy~gg~f~~~i~f~~~YP~~---pP~v~f~t~ 43 (109)
+||.=|+|.+ +.+|++||+. -|.++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4788899987 5578889975 699999998
No 51
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=35.39 E-value=57 Score=24.69 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=22.0
Q ss_pred CCcEEEEEEEeCCCCC------------------CCCCeeEEee
Q 033889 17 EGRIYQLKLFCDKDYP------------------EKPPSVRFHS 42 (109)
Q Consensus 17 ~gg~f~~~i~f~~~YP------------------~~pP~v~f~t 42 (109)
+.|.|.|.=..|.-|| .+||.|.|.-
T Consensus 179 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 222 (285)
T TIGR02439 179 AEGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFFV 222 (285)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEEE
Confidence 3589999999999997 6789999974
No 52
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=35.05 E-value=9.5 Score=28.82 Aligned_cols=50 Identities=24% Similarity=0.571 Sum_probs=32.5
Q ss_pred cEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCCCCCCCC-CCCHHHHHHHHHHHhh
Q 033889 19 RIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQR-EYTMEDILTQLKKEMA 85 (109)
Q Consensus 19 g~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~~~~W~p-~~~i~~il~~i~~ll~ 85 (109)
..-.++|.++.+||.++|.+. ++ .|.. +. ..|.+ ..++.+++...+..+.
T Consensus 137 R~H~l~l~l~~~yp~~~p~~~---------~~-----~P~~-~~--~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 137 RQHYLELKLPSNYPFEPPSCS---------LD-----LPIP-FS--LSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp EEEEEEEETTTTTTTSEEEEC---------S------TTS--HH--HHHHCHT-SHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCCCCceee---------CC-----CCcc-hh--hhhcccccCHHHHHHHHHHHHH
Confidence 456688999999999998542 11 0110 11 46888 7788888887777663
No 53
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=33.86 E-value=37 Score=26.19 Aligned_cols=38 Identities=13% Similarity=0.023 Sum_probs=24.8
Q ss_pred CCCCCcEEE-EEEEe-----CCCCCCCCCeeEEeeeeecCCccC
Q 033889 14 TVHEGRIYQ-LKLFC-----DKDYPEKPPSVRFHSRINMTCVNH 51 (109)
Q Consensus 14 tpy~gg~f~-~~i~f-----~~~YP~~pP~v~f~t~i~HpnV~~ 51 (109)
--|+.|.+. ++..| -++=+...|+|.|.-.+|||||-+
T Consensus 282 q~w~~g~~ll~ddsf~ha~~~dgs~eds~rvV~~V~lwhpevq~ 325 (334)
T KOG3696|consen 282 QCWAEGKCLLYDDSFLHALQHDGSSEDSPRVVFTVDLWHPEVQP 325 (334)
T ss_pred ccccccceeEeechhhcccccCCCcccCceEEEEEeccCccccc
Confidence 346544443 34443 233345579999999999999974
No 54
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=33.03 E-value=20 Score=28.16 Aligned_cols=65 Identities=12% Similarity=0.257 Sum_probs=40.8
Q ss_pred EEEEcCCCCC----CCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEecccCCCCCCCCCCCC--HHHHHHH
Q 033889 6 PFFFSGPQTV----HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYT--MEDILTQ 79 (109)
Q Consensus 6 ~~i~Gp~~tp----y~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~~~l~~~~~W~p~~~--i~~il~~ 79 (109)
+.++||+||- -++-.-++.|...+.|+..- . |. .=|.+++ .+|....+ +..++..
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~----l--------iE----inshsLF---SKWFsESgKlV~kmF~k 240 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQ----L--------IE----INSHSLF---SKWFSESGKLVAKMFQK 240 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheeeecCccccce----E--------EE----EehhHHH---HHHHhhhhhHHHHHHHH
Confidence 6789999982 23334678888888776321 0 00 0122333 57865544 7888899
Q ss_pred HHHHhhCCCC
Q 033889 80 LKKEMAAPHN 89 (109)
Q Consensus 80 i~~ll~~p~~ 89 (109)
|+.|+.++++
T Consensus 241 I~ELv~d~~~ 250 (423)
T KOG0744|consen 241 IQELVEDRGN 250 (423)
T ss_pred HHHHHhCCCc
Confidence 9999988654
No 55
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=32.17 E-value=69 Score=24.13 Aligned_cols=26 Identities=23% Similarity=0.539 Sum_probs=22.1
Q ss_pred CCcEEEEEEEeCCCCC------------------CCCCeeEEee
Q 033889 17 EGRIYQLKLFCDKDYP------------------EKPPSVRFHS 42 (109)
Q Consensus 17 ~gg~f~~~i~f~~~YP------------------~~pP~v~f~t 42 (109)
+.|.|.+.-..|.-|| ..||.|.|.-
T Consensus 171 ~~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~V 214 (277)
T cd03461 171 EDGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFMV 214 (277)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEEE
Confidence 3589999999999998 5799999874
No 56
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=31.42 E-value=61 Score=25.09 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=21.6
Q ss_pred cEEEEEEEeCCCCCCCCCeeEEeee
Q 033889 19 RIYQLKLFCDKDYPEKPPSVRFHSR 43 (109)
Q Consensus 19 g~f~~~i~f~~~YP~~pP~v~f~t~ 43 (109)
-.+.+.+..++.||...|+|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4577888899999999999999876
No 57
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=30.82 E-value=50 Score=21.20 Aligned_cols=20 Identities=10% Similarity=0.444 Sum_probs=16.6
Q ss_pred eeEEEEEEcCCCCCCCCcEEEE
Q 033889 2 VNYFPFFFSGPQTVHEGRIYQL 23 (109)
Q Consensus 2 ~~W~~~i~Gp~~tpy~gg~f~~ 23 (109)
++|.|.|-| +..|+|-.|.|
T Consensus 1 ~kWkC~iCg--~~I~~gqlFTF 20 (101)
T PF09943_consen 1 KKWKCYICG--KPIYEGQLFTF 20 (101)
T ss_pred CceEEEecC--CeeeecceEEE
Confidence 479999986 66899998886
No 58
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=30.37 E-value=64 Score=23.54 Aligned_cols=59 Identities=15% Similarity=0.302 Sum_probs=43.9
Q ss_pred CCCCeeEEeeeeecCCccC-CCceEecccCCCCCCC--CCCCCHHHHHHHHHHHhhCCCCCCCC
Q 033889 33 EKPPSVRFHSRINMTCVNH-ETGVVEPKKFGLLVNW--QREYTMEDILTQLKKEMAAPHNRKLV 93 (109)
Q Consensus 33 ~~pP~v~f~t~i~HpnV~~-~~G~ic~~~l~~~~~W--~p~~~i~~il~~i~~ll~~p~~~~~~ 93 (109)
..||.|-|-.+.|...||- +.|.|-..+-+ ..| .|..++.+-|..|-.+|..|+.++-|
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelan--agrplfpg~dvddqlkrif~~lg~p~ed~wp 228 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELAN--AGRPLFPGNDVDDQLKRIFRLLGTPTEDQWP 228 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhh--cCCCCCCCCcHHHHHHHHHHHhCCCccccCC
Confidence 4789999999998888862 24555444433 455 68889999999999999988876543
No 59
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=30.35 E-value=79 Score=23.91 Aligned_cols=26 Identities=8% Similarity=0.284 Sum_probs=21.4
Q ss_pred CCcEEEEEEEeCCCCC------------------CCCCeeEEee
Q 033889 17 EGRIYQLKLFCDKDYP------------------EKPPSVRFHS 42 (109)
Q Consensus 17 ~gg~f~~~i~f~~~YP------------------~~pP~v~f~t 42 (109)
+.|.|.++-..|..|| ..||.|.|.-
T Consensus 183 adG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~V 226 (281)
T TIGR02438 183 DEGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLKV 226 (281)
T ss_pred CCCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEEE
Confidence 3588999999998887 6889998874
No 60
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=29.61 E-value=82 Score=23.83 Aligned_cols=26 Identities=15% Similarity=0.453 Sum_probs=21.8
Q ss_pred CCcEEEEEEEeCCCCC------------------CCCCeeEEee
Q 033889 17 EGRIYQLKLFCDKDYP------------------EKPPSVRFHS 42 (109)
Q Consensus 17 ~gg~f~~~i~f~~~YP------------------~~pP~v~f~t 42 (109)
+.|.|.|+=..|.-|| ..||.|.|.-
T Consensus 175 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 218 (282)
T cd03460 175 ADGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFFV 218 (282)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEEE
Confidence 3589999999999996 6789998874
No 61
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=27.50 E-value=97 Score=22.53 Aligned_cols=25 Identities=20% Similarity=0.496 Sum_probs=21.1
Q ss_pred CcEEEEEEEeCCCCCC-------CCCeeEEee
Q 033889 18 GRIYQLKLFCDKDYPE-------KPPSVRFHS 42 (109)
Q Consensus 18 gg~f~~~i~f~~~YP~-------~pP~v~f~t 42 (109)
.|.|.|.-..|--||. .||.|.|.-
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~V 153 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFSL 153 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEEE
Confidence 5899999999999964 799999863
No 62
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=27.49 E-value=62 Score=25.60 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=26.1
Q ss_pred CccCCCceEecccC-CCCCCCCCC--CCHHHHHHHHHHH
Q 033889 48 CVNHETGVVEPKKF-GLLVNWQRE--YTMEDILTQLKKE 83 (109)
Q Consensus 48 nV~~~~G~ic~~~l-~~~~~W~p~--~~i~~il~~i~~l 83 (109)
+|.|++|+||..+= +..+...|. =+|.+++..|.++
T Consensus 331 cVHP~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eEl~~~ 369 (412)
T KOG2851|consen 331 CVHPKTGRVCVPIDVSKVDEFDPEKVPTISDLLEELESL 369 (412)
T ss_pred cccCCCCceEeecchhhccccCcccCCcHHHHHHHHhhc
Confidence 47788999998762 112556554 3799999999887
No 63
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=26.81 E-value=1e+02 Score=22.80 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=21.2
Q ss_pred CCcEEEEEEEeCCCCC------------------CCCCeeEEee
Q 033889 17 EGRIYQLKLFCDKDYP------------------EKPPSVRFHS 42 (109)
Q Consensus 17 ~gg~f~~~i~f~~~YP------------------~~pP~v~f~t 42 (109)
+.|.|.|.=..|..|| ..||.|.|.-
T Consensus 149 ~~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~V 192 (246)
T TIGR02465 149 ADGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYKV 192 (246)
T ss_pred CCCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEEE
Confidence 4589999999999996 4788988863
No 64
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=26.64 E-value=1e+02 Score=22.39 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=21.3
Q ss_pred CcEEEEEEEeCCCCCC-------CCCeeEEee
Q 033889 18 GRIYQLKLFCDKDYPE-------KPPSVRFHS 42 (109)
Q Consensus 18 gg~f~~~i~f~~~YP~-------~pP~v~f~t 42 (109)
.|.|+|.=..|--||. .||.|.|.-
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~V 148 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFSL 148 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEEE
Confidence 5899999999999975 899998863
No 65
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=25.88 E-value=69 Score=18.30 Aligned_cols=20 Identities=20% Similarity=0.591 Sum_probs=12.7
Q ss_pred CCCCCCCCHHHHHHHHHHHh
Q 033889 65 VNWQREYTMEDILTQLKKEM 84 (109)
Q Consensus 65 ~~W~p~~~i~~il~~i~~ll 84 (109)
=+|.|.++|++++.......
T Consensus 36 LgW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp C----SSSHHHHHHHHHHHH
T ss_pred hCCCcCCCHHHHHHHHHHHH
Confidence 36999999999998776643
No 66
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=25.23 E-value=1.8e+02 Score=20.23 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=17.5
Q ss_pred EEEEEEeCCCCCCCCCeeEEeee
Q 033889 21 YQLKLFCDKDYPEKPPSVRFHSR 43 (109)
Q Consensus 21 f~~~i~f~~~YP~~pP~v~f~t~ 43 (109)
-.++|.|. +|=..||+|.|+.+
T Consensus 55 ~~lr~d~~-n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 55 LRLRFDFT-NWDLRPPSVVFVDP 76 (177)
T ss_pred eEEEEecc-ccCcCCCceEEecc
Confidence 56677775 49999999999876
No 67
>cd04759 Rib_hydrolase ADP-ribosyl cyclase (also known as cyclic ADP-ribose hydrolase or CD38) synthesizes the second messenger cyclic-ADP ribose (cADPR), which in turn releases calcium from internal stores. Mammals possess two membrane proteins, CD38 and BST-1/CD157, which exhibit ADP-ribosyl cyclase function, as well as intracellular soluble ADP-ribose cyclases. CD38 is involved in differentiation, adhesion, and cell proliferation, as well as diseases such as AIDS, diabetes, and B-cell chronic lymphocytic leukemia. The extramembrane domain of CD38 acts as a multifunctional enzyme and can synthesize cADPR from NAD+, hydrolyze NAD+, and cADPR to ADPR, as well as catalyze the exchange of the nicotinamide group of NADP+ with nicotinic acid under acidic conditions to yield NAADP+ (nicotinic acid-adenine dinucleotide phosphate), a metabolite involved in Ca2+ mobilization from acidic stores.
Probab=25.06 E-value=2.9e+02 Score=20.49 Aligned_cols=52 Identities=4% Similarity=-0.181 Sum_probs=35.3
Q ss_pred EEEEEEcCCCC-CCCCcEEEEEEEeCCCCCCCCCeeEEeeeeecCCccCCCceEec
Q 033889 4 YFPFFFSGPQT-VHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEP 58 (109)
Q Consensus 4 W~~~i~Gp~~t-py~gg~f~~~i~f~~~YP~~pP~v~f~t~i~HpnV~~~~G~ic~ 58 (109)
-++.+-|...+ +|..+-+..++++|. ..|++|.=+.-..-+++...+..-|-
T Consensus 149 V~VmLNGS~~~~af~~~S~Fg~vElp~---L~p~kV~~v~i~vvh~l~~~~~~sC~ 201 (242)
T cd04759 149 VHVMLNGSASGGAFRNNSTFGSVEIPN---LNPDKVSQVIIWVIHDLEGPNRDSCG 201 (242)
T ss_pred EEEEEcCCCCCCCcCCCCceeeEEccc---CCccceeeEEEEEEcCCCCCcccccc
Confidence 36778887777 999999999999988 45667666654433444433444553
No 68
>PF06468 Spond_N: Spondin_N; InterPro: IPR009465 This conserved region is found in the N-terminal half of several Spondin proteins []. Spondins are involved in patterning axonal growth trajectory through either inhibiting or promoting adhesion of embryonic nerve cells [].; PDB: 3D34_A 3Q13_A.
Probab=25.03 E-value=1e+02 Score=21.84 Aligned_cols=25 Identities=32% Similarity=0.640 Sum_probs=16.2
Q ss_pred EEEEEEE-------eCCCCCCCCCeeEEeeee
Q 033889 20 IYQLKLF-------CDKDYPEKPPSVRFHSRI 44 (109)
Q Consensus 20 ~f~~~i~-------f~~~YP~~pP~v~f~t~i 44 (109)
+|++.++ +|++||...|.-+|..-+
T Consensus 3 ~Y~~~f~g~Ws~~~hpk~yP~~~~~~~fSpli 34 (196)
T PF06468_consen 3 TYEVTFEGIWSRNTHPKDYPSNRPPAHFSPLI 34 (196)
T ss_dssp EEEEEEEEE-STTTS-TT--CTSSCSEEEEEE
T ss_pred eEEEEEEEEECCccCcccccccccccccchhh
Confidence 5666666 899999987778887653
No 69
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=24.06 E-value=69 Score=21.56 Aligned_cols=21 Identities=10% Similarity=0.161 Sum_probs=13.1
Q ss_pred EEEEEEcCCCCCCC-CcEEEEE
Q 033889 4 YFPFFFSGPQTVHE-GRIYQLK 24 (109)
Q Consensus 4 W~~~i~Gp~~tpy~-gg~f~~~ 24 (109)
|.+++.|++||+.. +.+|-++
T Consensus 50 ytVtV~G~dGs~~~~n~tf~~~ 71 (139)
T PF04881_consen 50 YTVTVQGPDGSIRKSNNTFMYK 71 (139)
T ss_pred eEEEEECCCCcceeccccchhe
Confidence 57788888877663 3444443
No 70
>PF15572 Imm26: Immunity protein 26
Probab=24.06 E-value=1e+02 Score=19.53 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=18.5
Q ss_pred CCCCCCCCcEEEEEEEeCCCCCCCCCeeEEee
Q 033889 11 GPQTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 42 (109)
Q Consensus 11 p~~tpy~gg~f~~~i~f~~~YP~~pP~v~f~t 42 (109)
+++..+.|.+|++ |..||++ +.|.|+-
T Consensus 7 ~~~~l~rG~i~R~----~~~ypye-~~VDFmV 33 (96)
T PF15572_consen 7 KEKYLWRGTIFRC----PGVYPYE-EVVDFMV 33 (96)
T ss_pred CCccEecceEEEe----cccCCCc-ccEEEEE
Confidence 3455667777665 6669998 6777763
No 71
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=21.31 E-value=1.5e+02 Score=22.11 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=21.0
Q ss_pred CCcEEEEEEEeCCCCC------------------CCCCeeEEee
Q 033889 17 EGRIYQLKLFCDKDYP------------------EKPPSVRFHS 42 (109)
Q Consensus 17 ~gg~f~~~i~f~~~YP------------------~~pP~v~f~t 42 (109)
+.|.|.|.-..|..|| ..||.|.|.-
T Consensus 155 ~~G~y~f~Ti~P~~Ypip~dGp~g~lL~~~grh~~RpaHIHf~V 198 (256)
T cd03458 155 EDGRYRFRTIRPVPYPIPPDGPTGELLEALGRHPWRPAHIHFMV 198 (256)
T ss_pred CCCCEEEEEECCCCccCCCCCcHHHHHHhcccCCCCCCeEEEEE
Confidence 3488999999998885 5789998874
No 72
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=21.31 E-value=1.6e+02 Score=22.08 Aligned_cols=30 Identities=23% Similarity=0.535 Sum_probs=26.2
Q ss_pred CCCCCCcEEEEEEEeCCCCCCCC--CeeEEee
Q 033889 13 QTVHEGRIYQLKLFCDKDYPEKP--PSVRFHS 42 (109)
Q Consensus 13 ~tpy~gg~f~~~i~f~~~YP~~p--P~v~f~t 42 (109)
.+.+.|..|++-|..|.+||..- |.|.|+.
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 46789999999999999999887 8888874
No 73
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=21.13 E-value=75 Score=24.75 Aligned_cols=18 Identities=0% Similarity=-0.228 Sum_probs=14.4
Q ss_pred EEEcCCCCCCCCcEEEEE
Q 033889 7 FFFSGPQTVHEGRIYQLK 24 (109)
Q Consensus 7 ~i~Gp~~tpy~gg~f~~~ 24 (109)
-.+|-+++||+-|.+++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~ 54 (343)
T COG3401 37 GLEGEESYPYQEGTTKVD 54 (343)
T ss_pred cccccCcceeeecccccc
Confidence 356778899999988876
Done!