BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033891
         (109 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DRB|J Chain J, The Crystal Structure Of Fancm Bound Mhf Complex
 pdb|4DRB|K Chain K, The Crystal Structure Of Fancm Bound Mhf Complex
 pdb|4DRB|L Chain L, The Crystal Structure Of Fancm Bound Mhf Complex
 pdb|4DRB|M Chain M, The Crystal Structure Of Fancm Bound Mhf Complex
 pdb|4DRB|N Chain N, The Crystal Structure Of Fancm Bound Mhf Complex
 pdb|4DRB|O Chain O, The Crystal Structure Of Fancm Bound Mhf Complex
          Length = 84

 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 52  KNRPTSANANALKLSCELLRVFVTXXXXXXXXXXXXXGVSKIEATHLERILPQLLLDF 109
           K+  T  + +AL+L  ELL+VFV                 +++   LE++LPQLLLDF
Sbjct: 27  KDDKTKVSGDALQLXVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQLLLDF 84


>pdb|3VH5|D Chain D, Crystal Structure Of The Chicken Cenp-T Histone
           FoldCENP-WCENP- SCENP-X Heterotetrameric Complex,
           Crystal Form I
 pdb|3VH6|D Chain D, Crystal Structure Of The Chicken Cenp-T Histone
           FoldCENP-WCENP- SCENP-X Heterotetrameric Complex,
           Crystal Form Ii
          Length = 81

 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%)

Query: 56  TSANANALKLSCELLRVFVTXXXXXXXXXXXXXGVSKIEATHLERILPQLLLDF 109
           T  N +AL L  ELL+VFV               + K++  H+E++LPQLLLDF
Sbjct: 27  TRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQLLLDF 80


>pdb|4DRA|E Chain E, Crystal Structure Of Mhf Complex
 pdb|4DRA|F Chain F, Crystal Structure Of Mhf Complex
 pdb|4DRA|G Chain G, Crystal Structure Of Mhf Complex
 pdb|4DRA|H Chain H, Crystal Structure Of Mhf Complex
          Length = 84

 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 52  KNRPTSANANALKLSCELLRVFVTXXXXXXXXXXXXXGVSKIEATHLERILPQLLLDF 109
           K+  T  + +AL+L  ELL+VFV                 +++   LE++LPQLLLDF
Sbjct: 27  KDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQLLLDF 84


>pdb|3B0B|C Chain C, Crystal Structure Of The Chicken Cenp-SCENP-X Complex
 pdb|3B0B|D Chain D, Crystal Structure Of The Chicken Cenp-SCENP-X Complex
          Length = 81

 Score = 33.5 bits (75), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 30/54 (55%)

Query: 56  TSANANALKLSCELLRVFVTXXXXXXXXXXXXXGVSKIEATHLERILPQLLLDF 109
           T  N +AL L  ELL+VFV               + K++  H+E++LPQLLLDF
Sbjct: 27  TRVNGDALLLXAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQLLLDF 80


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,614,695
Number of Sequences: 62578
Number of extensions: 77814
Number of successful extensions: 88
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 5
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)