BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033891
         (109 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2NKU0|CENPX_BOVIN Centromere protein X OS=Bos taurus GN=STRA13 PE=3 SV=1
          Length = 79

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 42/58 (72%)

Query: 52  KNRPTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQLLLDF 109
           K++ T  + +AL+L  ELL++FV EA  R+   A+AEG++ ++   LE++LPQLLLDF
Sbjct: 22  KDKKTKVSGDALQLVAELLKIFVVEAAIRSVRQAQAEGLAHVDVEQLEKVLPQLLLDF 79


>sp|A8MT69|CENPX_HUMAN Centromere protein X OS=Homo sapiens GN=STRA13 PE=1 SV=1
          Length = 81

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 38/58 (65%)

Query: 52  KNRPTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQLLLDF 109
           K+  T  + +AL+L  ELL+VFV EA  R    A+AE   +++   LE++LPQLLLDF
Sbjct: 24  KDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQLLLDF 81


>sp|Q5RBU1|CENPX_PONAB Centromere protein X OS=Pongo abelii GN=STRA13 PE=3 SV=1
          Length = 81

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 38/58 (65%)

Query: 52  KNRPTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQLLLDF 109
           K+  T  + +AL+L  ELL+VFV EA  R    A+AE   +++   LE++LPQLLLDF
Sbjct: 24  KDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQLLLDF 81


>sp|Q8C4X1|CENPX_MOUSE Centromere protein X OS=Mus musculus GN=Stra13 PE=2 SV=1
          Length = 78

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%)

Query: 52  KNRPTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQLLLDF 109
           ++  T  + +AL+L  E LR+FV EA  R    A+AE +  +E   LE++LPQLLLDF
Sbjct: 21  RDCKTKVSGDALQLMAEFLRIFVLEAAVRGVWQAQAEDLDVVEVDQLEKVLPQLLLDF 78


>sp|P0DJH7|CENPX_CHICK Centromere protein X OS=Gallus gallus GN=STRA13 PE=1 SV=1
          Length = 80

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 39/54 (72%)

Query: 56  TSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQLLLDF 109
           T  N +AL L  ELL+VFV EA  RAA  A+AE + K++  H+E++LPQLLLDF
Sbjct: 26  TRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQLLLDF 79


>sp|Q5LNI8|FMT_RUEPO Methionyl-tRNA formyltransferase OS=Ruegeria pomeroyi (strain ATCC
           700808 / DSM 15171 / DSS-3) GN=fmt PE=3 SV=1
          Length = 301

 Score = 30.0 bits (66), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 47  AGTSKKNRPTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQLL 106
           AG  KK+RPT  +A AL L  E+      +  +  A  A A G           ILPQ +
Sbjct: 37  AGRGKKDRPTPVHARALDLGLEVRHPVSLKGAEAQADFA-ALGADVAVVVAYGLILPQAV 95

Query: 107 LD 108
           LD
Sbjct: 96  LD 97


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.129    0.358 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,398,491
Number of Sequences: 539616
Number of extensions: 1255959
Number of successful extensions: 3151
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3143
Number of HSP's gapped (non-prelim): 11
length of query: 109
length of database: 191,569,459
effective HSP length: 77
effective length of query: 32
effective length of database: 150,019,027
effective search space: 4800608864
effective search space used: 4800608864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)