Query 033891
Match_columns 109
No_of_seqs 95 out of 106
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 12:22:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033891.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033891hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b0b_C CENP-X, centromere prot 100.0 7.5E-34 2.6E-38 193.0 7.6 77 2-109 4-80 (81)
2 4dra_E Centromere protein X; D 100.0 1.1E-31 3.8E-36 183.7 6.9 75 4-109 10-84 (84)
3 3v9r_B MHF2, uncharacterized p 99.8 4.2E-20 1.5E-24 127.6 5.2 61 49-109 13-80 (88)
4 3b0c_W CENP-W, centromere prot 96.9 0.0027 9.1E-08 41.1 6.2 52 55-106 20-71 (76)
5 1n1j_A NF-YB; histone-like PAI 96.3 0.015 5.2E-07 38.5 6.7 50 55-104 25-74 (93)
6 1n1j_B NF-YC; histone-like PAI 96.2 0.013 4.4E-07 39.5 6.2 47 56-102 36-82 (97)
7 2byk_B Chrac-14; nucleosome sl 96.0 0.02 6.8E-07 40.7 6.5 52 54-105 25-76 (128)
8 1h3o_B Transcription initiatio 96.0 0.031 1E-06 37.0 6.9 58 38-102 11-68 (76)
9 1b67_A Protein (histone HMFA); 95.7 0.041 1.4E-06 34.3 6.4 49 55-103 17-65 (68)
10 4g92_C HAPE; transcription fac 95.6 0.029 1E-06 39.2 5.9 49 54-102 56-104 (119)
11 1jfi_A Transcription regulator 95.2 0.027 9.2E-07 38.1 4.7 46 56-101 28-73 (98)
12 2byk_A Chrac-16; nucleosome sl 95.2 0.035 1.2E-06 40.1 5.5 49 55-103 35-84 (140)
13 1jfi_B DR1 protein, transcript 94.9 0.072 2.5E-06 40.2 6.7 51 55-105 31-81 (179)
14 1f1e_A Histone fold protein; a 94.4 0.086 3E-06 38.8 5.9 51 56-106 21-71 (154)
15 2hue_C Histone H4; mini beta s 93.8 0.13 4.3E-06 33.8 5.2 49 56-104 26-74 (84)
16 1id3_B Histone H4; nucleosome 93.5 0.16 5.6E-06 34.6 5.5 50 56-105 44-93 (102)
17 1ku5_A HPHA, archaeal histon; 93.3 0.19 6.4E-06 31.6 5.2 46 56-101 22-67 (70)
18 2yfw_B Histone H4, H4; cell cy 93.2 0.17 5.8E-06 34.4 5.2 49 56-104 45-93 (103)
19 1tzy_D Histone H4-VI; histone- 93.2 0.19 6.7E-06 34.0 5.5 50 56-105 45-94 (103)
20 1taf_B TFIID TBP associated fa 92.5 0.47 1.6E-05 30.7 6.3 47 56-102 22-68 (70)
21 1f1e_A Histone fold protein; a 91.9 0.34 1.2E-05 35.6 5.7 50 54-103 96-145 (154)
22 3b0c_T CENP-T, centromere prot 91.1 0.63 2.1E-05 32.1 6.1 46 56-101 23-68 (111)
23 2f8n_G Core histone macro-H2A. 90.8 0.43 1.5E-05 33.5 5.1 45 57-101 40-84 (120)
24 2nqb_C Histone H2A; nucleosome 90.6 0.46 1.6E-05 33.5 5.1 46 57-102 41-86 (123)
25 1tzy_A Histone H2A-IV; histone 90.1 0.51 1.8E-05 33.6 5.1 46 57-102 43-88 (129)
26 1id3_C Histone H2A.1; nucleoso 89.3 0.5 1.7E-05 33.7 4.5 46 57-102 43-88 (131)
27 1f66_C Histone H2A.Z; nucleoso 88.8 0.6 2E-05 33.2 4.6 46 56-101 45-90 (128)
28 2f8n_K Histone H2A type 1; nuc 88.6 0.64 2.2E-05 34.0 4.8 46 57-102 62-107 (149)
29 1bh9_B TAFII28; histone fold, 84.0 4.4 0.00015 27.0 6.6 49 56-104 32-81 (89)
30 2jss_A Chimera of histone H2B. 83.2 1.7 5.7E-05 32.3 4.7 46 56-101 123-168 (192)
31 2v1u_A Cell division control p 81.9 11 0.00036 27.8 8.7 49 57-105 222-276 (387)
32 3uk6_A RUVB-like 2; hexameric 80.7 15 0.0005 27.4 9.2 48 57-104 278-329 (368)
33 2ly8_A Budding yeast chaperone 79.6 4.9 0.00017 28.4 5.9 55 47-101 54-108 (121)
34 3b0b_B CENP-S, centromere prot 78.9 4.7 0.00016 27.9 5.5 46 55-100 37-82 (107)
35 4dra_A Centromere protein S; D 76.8 6.5 0.00022 27.6 5.8 46 55-100 45-90 (113)
36 3v9r_A MHF1, uncharacterized p 76.1 9 0.00031 25.6 6.1 46 55-100 30-75 (90)
37 1taf_A TFIID TBP associated fa 75.9 13 0.00043 23.7 7.0 55 38-100 7-61 (68)
38 1khy_A CLPB protein; alpha hel 75.1 2.4 8E-05 28.3 3.0 27 74-100 10-36 (148)
39 3fh2_A Probable ATP-dependent 74.6 2.4 8.3E-05 28.7 3.0 27 74-100 11-37 (146)
40 3fes_A ATP-dependent CLP endop 73.0 2.4 8.3E-05 28.8 2.7 27 74-100 12-38 (145)
41 2y1q_A CLPC N-domain, negative 72.6 2.6 8.7E-05 28.3 2.7 27 74-100 10-36 (150)
42 1k6k_A ATP-dependent CLP prote 71.8 2.4 8.2E-05 28.2 2.4 27 74-100 6-32 (143)
43 2nqb_D Histone H2B; nucleosome 69.1 20 0.00068 25.5 6.8 60 34-100 35-94 (123)
44 2l5a_A Histone H3-like centrom 68.1 12 0.0004 29.4 5.9 52 51-102 172-223 (235)
45 3vh5_A CENP-S; histone fold, c 66.3 13 0.00044 27.0 5.5 46 55-100 37-82 (140)
46 1tzy_B Histone H2B; histone-fo 65.8 25 0.00086 25.1 6.9 61 34-101 38-98 (126)
47 2qby_A CDC6 homolog 1, cell di 63.6 40 0.0014 24.5 9.4 49 57-105 218-272 (386)
48 1g8p_A Magnesium-chelatase 38 63.5 22 0.00075 26.1 6.4 52 55-106 265-323 (350)
49 3zri_A CLPB protein, CLPV; cha 61.5 5.3 0.00018 28.6 2.7 30 71-100 26-55 (171)
50 3fes_A ATP-dependent CLP endop 58.8 7.9 0.00027 26.2 3.0 26 74-99 86-111 (145)
51 3fh2_A Probable ATP-dependent 56.0 9.3 0.00032 25.7 3.0 25 75-99 87-111 (146)
52 2jss_A Chimera of histone H2B. 55.6 51 0.0018 24.1 7.3 54 40-100 11-64 (192)
53 2qby_B CDC6 homolog 3, cell di 48.8 78 0.0027 23.3 7.8 47 57-105 218-270 (384)
54 3kw6_A 26S protease regulatory 48.1 18 0.00063 21.9 3.2 35 68-106 40-74 (78)
55 3mse_B Calcium-dependent prote 45.8 42 0.0014 22.3 5.0 50 56-105 17-68 (180)
56 1bh9_A TAFII18; histone fold, 45.5 44 0.0015 19.5 4.8 28 56-83 17-44 (45)
57 3pm8_A PFCDPK2, calcium-depend 42.6 24 0.00081 24.2 3.4 50 56-105 37-86 (197)
58 1k6k_A ATP-dependent CLP prote 42.1 18 0.00061 23.8 2.6 25 75-99 85-109 (143)
59 3bos_A Putative DNA replicatio 42.0 51 0.0017 22.2 5.0 48 56-104 192-242 (242)
60 1fnn_A CDC6P, cell division co 41.9 88 0.003 22.9 6.7 50 57-106 214-275 (389)
61 2y1q_A CLPC N-domain, negative 41.9 21 0.00073 23.6 3.0 26 74-99 84-109 (150)
62 2kru_A Light-independent proto 39.8 24 0.0008 22.4 2.8 42 59-101 7-49 (63)
63 3pxg_A Negative regulator of g 38.7 19 0.00065 29.0 2.7 27 74-100 10-36 (468)
64 1khy_A CLPB protein; alpha hel 38.1 26 0.0009 23.0 3.0 26 74-99 87-112 (148)
65 3vlf_B 26S protease regulatory 36.8 49 0.0017 20.7 4.0 34 69-106 39-72 (88)
66 1lv7_A FTSH; alpha/beta domain 36.7 39 0.0013 23.9 3.9 30 77-106 224-253 (257)
67 3h4m_A Proteasome-activating n 36.0 40 0.0014 24.1 3.9 33 70-106 227-259 (285)
68 3zri_A CLPB protein, CLPV; cha 35.9 27 0.00091 24.9 2.9 25 75-99 104-129 (171)
69 2obh_A Centrin-2; DNA repair c 34.9 66 0.0022 20.3 4.5 29 77-105 80-108 (143)
70 1bjf_A Neurocalcin delta; calc 34.6 30 0.001 22.7 2.8 50 55-105 5-55 (193)
71 2l09_A ASR4154 protein; proto- 34.5 23 0.00078 22.4 2.1 41 60-101 7-48 (62)
72 2r44_A Uncharacterized protein 34.0 73 0.0025 23.4 5.1 52 55-106 224-298 (331)
73 3syl_A Protein CBBX; photosynt 33.1 1.3E+02 0.0046 21.5 7.0 46 57-102 223-283 (309)
74 3k1j_A LON protease, ATP-depen 32.8 1.2E+02 0.004 25.1 6.7 48 55-102 312-372 (604)
75 2hue_B Histone H3; mini beta s 32.0 1E+02 0.0035 19.8 5.8 45 55-99 23-67 (77)
76 2aao_A CDPK, calcium-dependent 31.6 46 0.0016 21.1 3.3 47 59-105 10-56 (166)
77 2pvb_A Protein (parvalbumin); 31.5 60 0.002 19.5 3.7 28 78-105 43-70 (108)
78 1bu3_A Calcium-binding protein 31.1 54 0.0018 19.7 3.4 27 79-105 45-71 (109)
79 1mzp_A 50S ribosomal protein L 30.9 27 0.00091 26.2 2.3 26 84-109 75-107 (217)
80 2l2e_A Calcium-binding protein 30.8 51 0.0018 21.6 3.5 49 56-105 6-55 (190)
81 2zkr_5 60S ribosomal protein L 29.6 23 0.00078 26.4 1.7 26 84-109 71-102 (212)
82 1ixz_A ATP-dependent metallopr 29.2 52 0.0018 23.2 3.5 29 70-102 225-253 (254)
83 1in4_A RUVB, holliday junction 28.9 56 0.0019 24.6 3.8 53 56-108 198-253 (334)
84 1iy2_A ATP-dependent metallopr 28.8 51 0.0018 23.8 3.5 23 80-102 255-277 (278)
85 1pva_A Parvalbumin; calcium bi 28.7 71 0.0024 19.1 3.7 27 79-105 45-71 (110)
86 1rwy_A Parvalbumin alpha; EF-h 28.6 63 0.0022 19.3 3.4 27 79-105 44-70 (109)
87 2dzn_B 26S protease regulatory 28.4 52 0.0018 20.1 3.0 36 66-105 33-68 (82)
88 2d8n_A Recoverin; structural g 27.7 57 0.002 21.8 3.4 48 57-105 15-63 (207)
89 2c9o_A RUVB-like 1; hexameric 27.4 1.3E+02 0.0043 23.8 5.8 51 57-108 385-439 (456)
90 3te6_A Regulatory protein SIR3 27.2 77 0.0026 24.7 4.5 50 56-105 251-315 (318)
91 3pxi_A Negative regulator of g 27.0 37 0.0013 28.7 2.7 27 74-100 10-36 (758)
92 1i2a_A 50S ribosomal protein L 26.2 25 0.00084 26.4 1.4 26 84-109 71-102 (219)
93 1r6b_X CLPA protein; AAA+, N-t 25.8 37 0.0013 28.6 2.5 27 74-100 6-32 (758)
94 5pal_A Parvalbumin; calcium-bi 25.5 75 0.0026 19.0 3.4 27 79-105 44-70 (109)
95 3qrx_A Centrin; calcium-bindin 25.4 1.2E+02 0.0041 19.2 4.5 30 76-105 101-130 (169)
96 1fpw_A Yeast frequenin, calciu 25.3 36 0.0012 22.3 1.9 17 89-105 39-55 (190)
97 1hqc_A RUVB; extended AAA-ATPa 25.2 58 0.002 23.5 3.2 51 56-106 186-239 (324)
98 1rro_A RAT oncomodulin; calciu 25.1 82 0.0028 18.8 3.5 26 80-105 45-70 (108)
99 1exr_A Calmodulin; high resolu 25.1 1.3E+02 0.0043 18.8 4.5 28 78-105 85-112 (148)
100 1k9u_A Polcalcin PHL P 7; poll 24.9 37 0.0013 19.2 1.7 15 88-102 50-64 (78)
101 2yfv_A Histone H3-like centrom 24.6 1.6E+02 0.0056 19.7 5.4 46 54-99 49-94 (100)
102 2xns_C RGS14, regulator of G-p 24.5 19 0.00066 21.1 0.4 31 76-106 7-37 (40)
103 3fs7_A Parvalbumin, thymic; ca 24.0 94 0.0032 18.6 3.6 28 78-105 44-71 (109)
104 3khe_A Calmodulin-like domain 23.7 32 0.0011 22.5 1.4 50 56-105 19-69 (191)
105 1tzy_C Histone H3; histone-fol 22.9 1.7E+02 0.0059 20.7 5.2 45 55-99 82-126 (136)
106 2kz2_A Calmodulin, CAM; TR2C, 22.9 75 0.0026 19.2 3.0 20 86-105 39-58 (94)
107 2wwq_5 50S ribosomal protein L 22.9 47 0.0016 25.2 2.4 25 84-109 86-111 (234)
108 2ovk_C Myosin catalytic light 22.2 67 0.0023 20.3 2.7 30 76-105 85-114 (159)
109 3fwb_A Cell division control p 22.1 1.3E+02 0.0046 18.6 4.2 29 77-105 97-125 (161)
110 2lmt_A Calmodulin-related prot 21.9 69 0.0024 20.5 2.8 30 76-105 83-112 (148)
111 1qvr_A CLPB protein; coiled co 21.8 53 0.0018 28.4 2.7 27 74-100 10-36 (854)
112 2kn2_A Calmodulin; S MAPK phos 21.8 71 0.0024 18.6 2.6 14 89-102 22-35 (92)
113 1g8i_A Frequenin, neuronal cal 21.5 68 0.0023 20.9 2.7 17 89-105 39-55 (190)
114 2mys_B Myosin; muscle protein, 21.4 1.2E+02 0.0043 19.1 4.0 30 76-105 95-124 (166)
115 3k21_A PFCDPK3, calcium-depend 21.3 44 0.0015 22.6 1.8 19 87-105 63-81 (191)
116 1top_A Troponin C; contractIle 21.3 1.6E+02 0.0053 18.3 4.4 28 78-105 98-125 (162)
117 3r45_A Histone H3-like centrom 20.9 2.1E+02 0.0071 20.9 5.4 45 55-99 99-143 (156)
118 3nqu_A Histone H3-like centrom 20.7 2.4E+02 0.0081 20.2 5.7 45 55-99 83-127 (140)
119 2g9p_A Antimicrobial peptide l 20.7 57 0.0019 17.3 1.7 22 65-86 2-23 (26)
120 1tiz_A Calmodulin-related prot 20.7 63 0.0022 17.3 2.1 13 90-102 51-63 (67)
121 1gng_X Frattide, glycogen synt 20.3 1E+02 0.0035 17.9 2.9 24 59-82 9-34 (39)
122 1qx2_A Vitamin D-dependent cal 20.1 87 0.003 17.2 2.7 17 88-104 18-35 (76)
No 1
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=100.00 E-value=7.5e-34 Score=193.01 Aligned_cols=77 Identities=43% Similarity=0.676 Sum_probs=71.5
Q ss_pred CCccCCCHHHHHHHHHHHhhhhhhhhhhcCCCChhHHHHHhhhccCCCccCCCCCccchHHHHHHHHHHHHHHHHHHHHH
Q 033891 2 EKETTFDSDLIHAIFKHIWTRRSLERERNGGTDAMESEFLLHQAGAGTSKKNRPTSANANALKLSCELLRVFVTEAVQRA 81 (109)
Q Consensus 2 ~~~~tf~~~li~~ifk~~w~~~~~~~~~~~~~~~~~~e~~~~~~~~~~s~k~~~TkIs~dAl~L~aeyL~iFV~EAv~RA 81 (109)
+..|+|+|+||++||++.|.. ++|||++||++|++|||++||+||++||
T Consensus 4 ~~~~~~~~~lI~ril~~~f~~-------------------------------~ktrI~~dAl~l~aeyl~iFV~EAv~RA 52 (81)
T 3b0b_C 4 EREGGFRKETVERLLRLHFRD-------------------------------GRTRVNGDALLLMAELLKVFVREAAARA 52 (81)
T ss_dssp ---CCCCHHHHHHHHHHHCCS-------------------------------TTCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHhcc-------------------------------CcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999875 3789999999999999999999999999
Q ss_pred HHHHHhhCCCccccchHHHhhhhhhcCC
Q 033891 82 AAIAEAEGVSKIEATHLERILPQLLLDF 109 (109)
Q Consensus 82 ~~eA~~Eg~~~levehLEKIlPQLLLDF 109 (109)
+++|+++|+++|+++|||||+|||||||
T Consensus 53 ~~~a~~e~~~~le~~~LEki~pqLlLDf 80 (81)
T 3b0b_C 53 ARQAQAEDLEKVDIEHVEKVLPQLLLDF 80 (81)
T ss_dssp HHHHHHTTCSEECHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCeecHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999998
No 2
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=99.97 E-value=1.1e-31 Score=183.74 Aligned_cols=75 Identities=39% Similarity=0.621 Sum_probs=70.2
Q ss_pred ccCCCHHHHHHHHHHHhhhhhhhhhhcCCCChhHHHHHhhhccCCCccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 033891 4 ETTFDSDLIHAIFKHIWTRRSLERERNGGTDAMESEFLLHQAGAGTSKKNRPTSANANALKLSCELLRVFVTEAVQRAAA 83 (109)
Q Consensus 4 ~~tf~~~li~~ifk~~w~~~~~~~~~~~~~~~~~~e~~~~~~~~~~s~k~~~TkIs~dAl~L~aeyL~iFV~EAv~RA~~ 83 (109)
.|+|+|+||+.||++. |++++|||++||++++++||++||+||++||++
T Consensus 10 ~~~i~~~li~ril~~~-------------------------------F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~ 58 (84)
T 4dra_E 10 GSGFRKELVSRLLHLH-------------------------------FKDDKTKVSGDALQLMVELLKVFVVEAAVRGVR 58 (84)
T ss_dssp -CCCCHHHHHHHHHTT-------------------------------CSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-------------------------------hcCCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999854 455789999999999999999999999999999
Q ss_pred HHHhhCCCccccchHHHhhhhhhcCC
Q 033891 84 IAEAEGVSKIEATHLERILPQLLLDF 109 (109)
Q Consensus 84 eA~~Eg~~~levehLEKIlPQLLLDF 109 (109)
+|+++|+++|+++|||||+|||||||
T Consensus 59 ~a~~e~~~~le~e~LEki~pQLlLDF 84 (84)
T 4dra_E 59 QAQAEDALRVDVDQLEKVLPQLLLDF 84 (84)
T ss_dssp HHHHTTCSSBCHHHHHHHHHHHHHHC
T ss_pred HHHhcCCCcccHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999
No 3
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=4.2e-20 Score=127.62 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=52.4
Q ss_pred CccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hCCCccccchHHHhhhhhhcCC
Q 033891 49 TSKKNRPTSANANALKLSCELLRVFVTEAVQRAAAIAEA-------EGVSKIEATHLERILPQLLLDF 109 (109)
Q Consensus 49 ~s~k~~~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~-------Eg~~~levehLEKIlPQLLLDF 109 (109)
..|++++|||++||++++++||++||+||++||++.+++ .++++|+++|||||++-||+|+
T Consensus 13 ~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEkiaGlL~~~~ 80 (88)
T 3v9r_B 13 QNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERIVGLLLMDM 80 (88)
T ss_dssp TTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHHHHHHT
T ss_pred HHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHHHHHHHHHH
Confidence 358899999999999999999999999999999988764 1246999999999999999985
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=96.92 E-value=0.0027 Score=41.12 Aligned_cols=52 Identities=17% Similarity=0.062 Sum_probs=47.5
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhhhhhh
Q 033891 55 PTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQLL 106 (109)
Q Consensus 55 ~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIlPQLL 106 (109)
.++||+||..++.+....|+..-..-|...|+.++...|..+|+...+-.||
T Consensus 20 ~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll 71 (76)
T 3b0c_W 20 HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVIL 71 (76)
T ss_dssp TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999998776554
No 5
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=96.28 E-value=0.015 Score=38.55 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=46.0
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhhhh
Q 033891 55 PTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQ 104 (109)
Q Consensus 55 ~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIlPQ 104 (109)
..+||+||..++++-...|+..-...|...|+..+-..|..+|+...+-.
T Consensus 25 ~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~ 74 (93)
T 1n1j_A 25 TGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMST 74 (93)
T ss_dssp TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 46899999999999999999999999999999888889999999987753
No 6
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=96.23 E-value=0.013 Score=39.50 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=43.3
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhh
Q 033891 56 TSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERIL 102 (109)
Q Consensus 56 TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIl 102 (109)
.+||++|..++++.+++|+.+-+.+|...|+..+...|..+||....
T Consensus 36 ~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av 82 (97)
T 1n1j_B 36 KMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAI 82 (97)
T ss_dssp CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHH
Confidence 48999999999999999999999999999988888899999998753
No 7
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=95.97 E-value=0.02 Score=40.69 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=47.6
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 54 RPTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 54 ~~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
+..+||+||..++++...+||..-...|...++.++-..|..+|+.+.+-++
T Consensus 25 d~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l 76 (128)
T 2byk_B 25 ESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL 76 (128)
T ss_dssp TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred ccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 3578999999999999999999999999999999998999999999877664
No 8
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=95.97 E-value=0.031 Score=37.03 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=51.0
Q ss_pred HHHHhhhccCCCccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhh
Q 033891 38 SEFLLHQAGAGTSKKNRPTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERIL 102 (109)
Q Consensus 38 ~e~~~~~~~~~~s~k~~~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIl 102 (109)
...|..++.++ ..+.+++-.++.++.+-||--.+.+|...|+-.++..|++.|++-+|
T Consensus 11 L~~Lv~~idp~-------~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~L 68 (76)
T 1h3o_B 11 LQDLVREVDPN-------EQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL 68 (76)
T ss_dssp HHHHHHHHCSS-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHH
T ss_pred HHHHHHhcCCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 44577778755 47899999999999999999999999999999999999999987655
No 9
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=95.70 E-value=0.041 Score=34.27 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=44.7
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhhh
Q 033891 55 PTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILP 103 (109)
Q Consensus 55 ~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIlP 103 (109)
..+|+++|..++++.++.|+.+-+..|...|...+-..|..+|+...+-
T Consensus 17 ~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~ 65 (68)
T 1b67_A 17 AERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 65 (68)
T ss_dssp CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGG
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 4689999999999999999999999999999888888999999987653
No 10
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=95.58 E-value=0.029 Score=39.20 Aligned_cols=49 Identities=24% Similarity=0.192 Sum_probs=45.6
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhh
Q 033891 54 RPTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERIL 102 (109)
Q Consensus 54 ~~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIl 102 (109)
...+|+++|.-++++-+++|+.+-+.+|...|+..+...|..+||...+
T Consensus 56 ~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av 104 (119)
T 4g92_C 56 EVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAAL 104 (119)
T ss_dssp TCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHH
Confidence 4568999999999999999999999999999999999999999998865
No 11
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=95.24 E-value=0.027 Score=38.09 Aligned_cols=46 Identities=13% Similarity=0.317 Sum_probs=39.3
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHh
Q 033891 56 TSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERI 101 (109)
Q Consensus 56 TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKI 101 (109)
.+|+.+|.-++++.+++|+.|-+.+|...|+..+...|..+||...
T Consensus 28 ~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~a 73 (98)
T 1jfi_A 28 GKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQC 73 (98)
T ss_dssp CCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTT
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHH
Confidence 4799999999999999999999999999998888888999888763
No 12
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=95.21 E-value=0.035 Score=40.10 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=44.4
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCCccccchHHHhhh
Q 033891 55 PTSANANALKLSCELLRVFVTEAVQRAAAIA-EAEGVSKIEATHLERILP 103 (109)
Q Consensus 55 ~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA-~~Eg~~~levehLEKIlP 103 (109)
..+|+++|.-++++-+++||.+-+.+|...+ +..+...|...||....-
T Consensus 35 v~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 35 TGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 3579999999999999999999999999999 877888999999988664
No 13
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=94.94 E-value=0.072 Score=40.19 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=46.9
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 55 PTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 55 ~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
+.+|++||..++.+....||..-...|...++.++-..|..+|+.+.+-.|
T Consensus 31 ~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~L 81 (179)
T 1jfi_B 31 NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESL 81 (179)
T ss_dssp TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhc
Confidence 468999999999999999999999999999999999999999999877654
No 14
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=94.45 E-value=0.086 Score=38.78 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=47.9
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhhhhhh
Q 033891 56 TSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQLL 106 (109)
Q Consensus 56 TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIlPQLL 106 (109)
.|||+||-..+++.+..|+.+...-|...|+..+-..|..+|+...++.|-
T Consensus 21 ~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg 71 (154)
T 1f1e_A 21 RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLM 71 (154)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcc
Confidence 589999999999999999999999999999999999999999999988774
No 15
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=93.80 E-value=0.13 Score=33.78 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=44.5
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhhhh
Q 033891 56 TSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQ 104 (109)
Q Consensus 56 TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIlPQ 104 (109)
.+||+++...+++.++.|+.+-+.-|...++-.+-..|+.+|+.-.+-.
T Consensus 26 ~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~ 74 (84)
T 2hue_C 26 KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 74 (84)
T ss_dssp CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 5899999999999999999999999999998888889999999876543
No 16
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=93.49 E-value=0.16 Score=34.63 Aligned_cols=50 Identities=8% Similarity=0.123 Sum_probs=45.0
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 56 TSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 56 TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
.+||+|+...+++.++.|+.+.+.-|+..++-.+-..|+.+|+.-.|-.+
T Consensus 44 ~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 44 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 68999999999999999999999999999988888899999998766443
No 17
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=93.33 E-value=0.19 Score=31.56 Aligned_cols=46 Identities=17% Similarity=0.290 Sum_probs=41.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHh
Q 033891 56 TSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERI 101 (109)
Q Consensus 56 TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKI 101 (109)
.++|++|...+.+.+..|+.+-+.-|...|+-.|-..|+.+|+.-.
T Consensus 22 ~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA 67 (70)
T 1ku5_A 22 ERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLA 67 (70)
T ss_dssp SEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHH
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 5899999999999999999999999999998888889999998643
No 18
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=93.25 E-value=0.17 Score=34.38 Aligned_cols=49 Identities=10% Similarity=0.158 Sum_probs=44.4
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhhhh
Q 033891 56 TSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQ 104 (109)
Q Consensus 56 TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIlPQ 104 (109)
.+|+++|...+++.++.|+.|-+.-|...++-.+-..|+.+|+.-.+-.
T Consensus 45 ~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~ 93 (103)
T 2yfw_B 45 KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKR 93 (103)
T ss_dssp CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 4899999999999999999999999999998888889999999876543
No 19
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=93.20 E-value=0.19 Score=34.00 Aligned_cols=50 Identities=14% Similarity=0.190 Sum_probs=44.9
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 56 TSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 56 TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
.+|+++|...+++.++.|+.|-+.-|...++-.+-..|+.+|+.-.+-.+
T Consensus 45 ~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 45 KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 48999999999999999999999999999988888899999998765443
No 20
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=92.49 E-value=0.47 Score=30.72 Aligned_cols=47 Identities=21% Similarity=0.182 Sum_probs=43.3
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhh
Q 033891 56 TSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERIL 102 (109)
Q Consensus 56 TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIl 102 (109)
++++.|+.+.+++-++.-++|-+.-|+..++--+-..|+.+|++..+
T Consensus 22 ~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Al 68 (70)
T 1taf_B 22 GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSL 68 (70)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHH
Confidence 35999999999999999999999999999988888899999998765
No 21
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=91.88 E-value=0.34 Score=35.56 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=45.5
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhhh
Q 033891 54 RPTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILP 103 (109)
Q Consensus 54 ~~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIlP 103 (109)
...|||++|-..++++++.|+.+-+.-|...|+-.+-..|+.+|+...+-
T Consensus 96 g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~ 145 (154)
T 1f1e_A 96 GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAIT 145 (154)
T ss_dssp TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 34699999999999999999999999999999999999999999987543
No 22
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=91.14 E-value=0.63 Score=32.11 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=40.5
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHh
Q 033891 56 TSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERI 101 (109)
Q Consensus 56 TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKI 101 (109)
.+||+++...+.+.+..|+...+.-|...|+-.|-..|+.+|+.-.
T Consensus 23 ~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~la 68 (111)
T 3b0c_T 23 TPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELL 68 (111)
T ss_dssp SCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 5899999999999999999999999999888778788888887654
No 23
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=90.77 E-value=0.43 Score=33.53 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=42.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHh
Q 033891 57 SANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERI 101 (109)
Q Consensus 57 kIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKI 101 (109)
||+.+|-..++..|+.++.|-...|...|+..+...|.++||+-.
T Consensus 40 RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lA 84 (120)
T 2f8n_G 40 RIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLA 84 (120)
T ss_dssp EECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHH
Confidence 799999999999999999999999999998888889999999864
No 24
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=90.56 E-value=0.46 Score=33.52 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=42.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhh
Q 033891 57 SANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERIL 102 (109)
Q Consensus 57 kIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIl 102 (109)
||+.+|-..++..|+.++.|-...|...|+..+...|.++||+-..
T Consensus 41 RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI 86 (123)
T 2nqb_C 41 RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAI 86 (123)
T ss_dssp EECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 7999999999999999999999999999998888999999998643
No 25
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=90.14 E-value=0.51 Score=33.56 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=42.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhh
Q 033891 57 SANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERIL 102 (109)
Q Consensus 57 kIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIl 102 (109)
||+.+|-..++..|+.++.|-...|...|+..+...|.++||+-..
T Consensus 43 RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI 88 (129)
T 1tzy_A 43 RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAI 88 (129)
T ss_dssp EECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHH
Confidence 7999999999999999999999999999998888899999998643
No 26
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=89.31 E-value=0.5 Score=33.71 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=42.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhh
Q 033891 57 SANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERIL 102 (109)
Q Consensus 57 kIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIl 102 (109)
||+.+|-..++..|+.++.|-...|...|+..+...|.++||+-..
T Consensus 43 RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI 88 (131)
T 1id3_C 43 RIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAI 88 (131)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHH
Confidence 8999999999999999999999999999998888899999998643
No 27
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=88.84 E-value=0.6 Score=33.17 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=42.4
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHh
Q 033891 56 TSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERI 101 (109)
Q Consensus 56 TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKI 101 (109)
-||+.+|-..++..|+.++.|-...|...|+..+...|.++||+-.
T Consensus 45 ~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lA 90 (128)
T 1f66_C 45 GRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLA 90 (128)
T ss_dssp CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHH
T ss_pred hhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHH
Confidence 3899999999999999999999999999998888889999999864
No 28
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=88.61 E-value=0.64 Score=34.03 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=42.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhh
Q 033891 57 SANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERIL 102 (109)
Q Consensus 57 kIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIl 102 (109)
||+.+|-..++..|+.++.|-..+|...|+..+...|.++||+-..
T Consensus 62 RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI 107 (149)
T 2f8n_K 62 RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAI 107 (149)
T ss_dssp EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred ccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHH
Confidence 8999999999999999999999999999998888899999998643
No 29
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=84.03 E-value=4.4 Score=27.03 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=41.1
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCccccchHHHhhhh
Q 033891 56 TSANANALKLSCELLRVFVTEAVQRAAAIAEAE-GVSKIEATHLERILPQ 104 (109)
Q Consensus 56 TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~E-g~~~levehLEKIlPQ 104 (109)
++++++.+..++-+-++||-|-+..|....+.. +.+-|.+.||..-.-.
T Consensus 32 ~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rr 81 (89)
T 1bh9_B 32 TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRR 81 (89)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Confidence 468999999999999999999999998876655 4668999999875443
No 30
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=83.23 E-value=1.7 Score=32.34 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=42.8
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHh
Q 033891 56 TSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERI 101 (109)
Q Consensus 56 TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKI 101 (109)
-||+.+|-..++..|+.++.|-...|...|+..+...|.++||+..
T Consensus 123 ~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lA 168 (192)
T 2jss_A 123 TRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLA 168 (192)
T ss_dssp CCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred cccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHH
Confidence 4899999999999999999999999999999888899999999864
No 31
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=81.87 E-value=11 Score=27.79 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=37.7
Q ss_pred ccchHHHHHHHHHHH------HHHHHHHHHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 57 SANANALKLSCELLR------VFVTEAVQRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 57 kIs~dAl~L~aeyL~------iFV~EAv~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
.++++++..++++.. -.+...+.++...|..++...|+.+|+++.+.++
T Consensus 222 ~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 222 VLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp TBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 467888888888876 2445666777777777788899999999988764
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=80.66 E-value=15 Score=27.37 Aligned_cols=48 Identities=6% Similarity=0.203 Sum_probs=36.9
Q ss_pred ccchHHHHHHHHHHH-H---HHHHHHHHHHHHHHhhCCCccccchHHHhhhh
Q 033891 57 SANANALKLSCELLR-V---FVTEAVQRAAAIAEAEGVSKIEATHLERILPQ 104 (109)
Q Consensus 57 kIs~dAl~L~aeyL~-i---FV~EAv~RA~~eA~~Eg~~~levehLEKIlPQ 104 (109)
.++++++..+++|-. - .+...+.+|...|..++...|+.+|+++++..
T Consensus 278 ~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 278 EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 578899999888876 2 23345667777777778899999999998864
No 33
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=79.56 E-value=4.9 Score=28.41 Aligned_cols=55 Identities=7% Similarity=0.050 Sum_probs=47.5
Q ss_pred CCCccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHh
Q 033891 47 AGTSKKNRPTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERI 101 (109)
Q Consensus 47 ~~~s~k~~~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKI 101 (109)
+=++++.---|||+++-.-+.++|+.|..+-+.-|+.-++-.+-..|+.+|+.=.
T Consensus 54 aiHA~~gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~A 108 (121)
T 2ly8_A 54 ALHLVPRGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYA 108 (121)
T ss_dssp TTTCCCCCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHH
T ss_pred HHcCCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHH
Confidence 4455777778999999999999999999999999999998888888999987643
No 34
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=78.88 E-value=4.7 Score=27.87 Aligned_cols=46 Identities=9% Similarity=-0.013 Sum_probs=40.6
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHH
Q 033891 55 PTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLER 100 (109)
Q Consensus 55 ~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEK 100 (109)
+.+++++++..+.+++.-|+.+...-+...|+--|-..|+.+|+.=
T Consensus 37 ~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~L 82 (107)
T 3b0b_B 37 GVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKL 82 (107)
T ss_dssp TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHH
Confidence 4689999999999999999999888888888777888999999864
No 35
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=76.83 E-value=6.5 Score=27.60 Aligned_cols=46 Identities=9% Similarity=0.021 Sum_probs=39.8
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHH
Q 033891 55 PTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLER 100 (109)
Q Consensus 55 ~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEK 100 (109)
++++|++++..+++++.-++.+-..-+...|+=-|-..|+.+|+.=
T Consensus 45 ~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~L 90 (113)
T 4dra_A 45 EMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKL 90 (113)
T ss_dssp TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHH
Confidence 4679999999999999999988888888888777888999999863
No 36
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=76.08 E-value=9 Score=25.64 Aligned_cols=46 Identities=15% Similarity=0.074 Sum_probs=39.6
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHH
Q 033891 55 PTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLER 100 (109)
Q Consensus 55 ~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEK 100 (109)
+..+|++++..+++++.-++.+-..-+...|+--|-..|+.+|+.=
T Consensus 30 g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L 75 (90)
T 3v9r_A 30 DIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLML 75 (90)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Confidence 4679999999999999999988877777788777888999999863
No 37
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=75.87 E-value=13 Score=23.66 Aligned_cols=55 Identities=13% Similarity=0.111 Sum_probs=45.7
Q ss_pred HHHHhhhccCCCccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHH
Q 033891 38 SEFLLHQAGAGTSKKNRPTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLER 100 (109)
Q Consensus 38 ~e~~~~~~~~~~s~k~~~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEK 100 (109)
+.+++.+.|+ ++.++++...+.+++.-++.+-..-|...|+--|...|+.||++-
T Consensus 7 i~~iLk~~G~--------~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkL 61 (68)
T 1taf_A 7 IMSILKELNV--------QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRL 61 (68)
T ss_dssp HHHHHHHTTC--------CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred HHHHHHHCCC--------cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 3445555553 358999999999999999999999999999888889999999864
No 38
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=75.13 E-value=2.4 Score=28.32 Aligned_cols=27 Identities=26% Similarity=0.209 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhhCCCccccchHHH
Q 033891 74 VTEAVQRAAAIAEAEGVSKIEATHLER 100 (109)
Q Consensus 74 V~EAv~RA~~eA~~Eg~~~levehLEK 100 (109)
+++++..|..+|+..+..+|++|||=.
T Consensus 10 ~~~~l~~A~~~A~~~~~~~i~~eHlLl 36 (148)
T 1khy_A 10 FQLALADAQSLALGHDNQFIEPLHLMS 36 (148)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHH
Confidence 578899999999999999999999855
No 39
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=74.60 E-value=2.4 Score=28.74 Aligned_cols=27 Identities=15% Similarity=0.043 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhCCCccccchHHH
Q 033891 74 VTEAVQRAAAIAEAEGVSKIEATHLER 100 (109)
Q Consensus 74 V~EAv~RA~~eA~~Eg~~~levehLEK 100 (109)
+++++..|..+|+.-+..+|++|||=.
T Consensus 11 ~~~~l~~A~~~A~~~~~~~i~~eHLLl 37 (146)
T 3fh2_A 11 ARRVIVLAQEEARMLNHNYIGTEHILL 37 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHH
Confidence 578889999999999999999999855
No 40
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=73.04 E-value=2.4 Score=28.78 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhCCCccccchHHH
Q 033891 74 VTEAVQRAAAIAEAEGVSKIEATHLER 100 (109)
Q Consensus 74 V~EAv~RA~~eA~~Eg~~~levehLEK 100 (109)
+++++..|..+|+..+..+|++|||=.
T Consensus 12 a~~~l~~A~~~A~~~~~~~i~~eHLLl 38 (145)
T 3fes_A 12 AKKAIDLAFESAKSLGHNIVGSEHILL 38 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHH
Confidence 578889999999999999999999854
No 41
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=72.64 E-value=2.6 Score=28.28 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhCCCccccchHHH
Q 033891 74 VTEAVQRAAAIAEAEGVSKIEATHLER 100 (109)
Q Consensus 74 V~EAv~RA~~eA~~Eg~~~levehLEK 100 (109)
+++++..|..+|...+..+|++|||=.
T Consensus 10 ~~~al~~A~~~A~~~~h~~i~~eHlLl 36 (150)
T 2y1q_A 10 AQKVLALAQEEALRLGHNNIGTEHILL 36 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHH
Confidence 578899999999999999999999854
No 42
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=71.84 E-value=2.4 Score=28.19 Aligned_cols=27 Identities=19% Similarity=0.069 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhCCCccccchHHH
Q 033891 74 VTEAVQRAAAIAEAEGVSKIEATHLER 100 (109)
Q Consensus 74 V~EAv~RA~~eA~~Eg~~~levehLEK 100 (109)
+++++..|..+|+..|..+|++|||=.
T Consensus 6 ~~~~l~~A~~~A~~~~~~~i~~eHlLl 32 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEFMTVEHLLL 32 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSEECHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHH
Confidence 578899999999999999999999855
No 43
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=69.10 E-value=20 Score=25.53 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=41.1
Q ss_pred ChhHHHHHhhhccCCCccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHH
Q 033891 34 DAMESEFLLHQAGAGTSKKNRPTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLER 100 (109)
Q Consensus 34 ~~~~~e~~~~~~~~~~s~k~~~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEK 100 (109)
-..=.-.++.||.+. |.||.+|+..+.-|++=+.---+..|...+.-..-..|+.++++-
T Consensus 35 y~~YIyKVLKQVhpd-------~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqt 94 (123)
T 2nqb_D 35 YAIYIYTVLKQVHPD-------TGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQT 94 (123)
T ss_dssp SHHHHHHHHHHHCTT-------CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHH
T ss_pred HHHHHHHHHHHhCCC-------CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHH
Confidence 345566777888755 579999998877666555444445555555556777888888875
No 44
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=68.14 E-value=12 Score=29.37 Aligned_cols=52 Identities=10% Similarity=0.131 Sum_probs=44.1
Q ss_pred cCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhh
Q 033891 51 KKNRPTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERIL 102 (109)
Q Consensus 51 ~k~~~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIl 102 (109)
.+.---|||.++-..+.++|+.|..+-+..|+..++--+-..|+.+|+.-.+
T Consensus 172 RrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~AL 223 (235)
T 2l5a_A 172 DKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYAL 223 (235)
T ss_dssp CCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHH
T ss_pred hcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHH
Confidence 3344458999999999999999999999999999988788889998886544
No 45
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=66.33 E-value=13 Score=27.03 Aligned_cols=46 Identities=9% Similarity=-0.013 Sum_probs=39.5
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHH
Q 033891 55 PTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLER 100 (109)
Q Consensus 55 ~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEK 100 (109)
.+++|++++..+++++.-++.+-..-+...|+--|-..|+.+|+.=
T Consensus 37 ~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkL 82 (140)
T 3vh5_A 37 GVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKL 82 (140)
T ss_dssp TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Confidence 4679999999999999999988877787788777888999999863
No 46
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=65.79 E-value=25 Score=25.07 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=41.8
Q ss_pred ChhHHHHHhhhccCCCccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHh
Q 033891 34 DAMESEFLLHQAGAGTSKKNRPTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERI 101 (109)
Q Consensus 34 ~~~~~e~~~~~~~~~~s~k~~~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKI 101 (109)
-.+-.-.++-||.+. |.||.+|+..+.-|++=+.---+..|...++-..-..|+..+++--
T Consensus 38 y~~YIyKVLKQVhpd-------~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtA 98 (126)
T 1tzy_B 38 YSIYVYKVLKQVHPD-------TGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTA 98 (126)
T ss_dssp CHHHHHHHHHHHCTT-------CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-------CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 445566778888755 4799999988776665544444455555555567778888888753
No 47
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=63.58 E-value=40 Score=24.54 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=35.7
Q ss_pred ccchHHHHHHHHHHH---H---HHHHHHHHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 57 SANANALKLSCELLR---V---FVTEAVQRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 57 kIs~dAl~L~aeyL~---i---FV~EAv~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
.++++++..++++.. - .+...+.++...+..++...|+.+|+++++..+
T Consensus 218 ~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 218 VLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp CSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 467888888877776 2 234456677767777788899999999887664
No 48
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=63.50 E-value=22 Score=26.06 Aligned_cols=52 Identities=25% Similarity=0.264 Sum_probs=36.8
Q ss_pred CCccchHHHHHHHHHHHH----HHHH---HHHHHHHHHHhhCCCccccchHHHhhhhhh
Q 033891 55 PTSANANALKLSCELLRV----FVTE---AVQRAAAIAEAEGVSKIEATHLERILPQLL 106 (109)
Q Consensus 55 ~TkIs~dAl~L~aeyL~i----FV~E---Av~RA~~eA~~Eg~~~levehLEKIlPQLL 106 (109)
+..++++++..+++|..- =.|+ .+.+|...|..+|...|+.+|+++++..++
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l 323 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMAL 323 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHH
Confidence 347899999999888654 1232 334444456667878899999999887654
No 49
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=61.55 E-value=5.3 Score=28.63 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCccccchHHH
Q 033891 71 RVFVTEAVQRAAAIAEAEGVSKIEATHLER 100 (109)
Q Consensus 71 ~iFV~EAv~RA~~eA~~Eg~~~levehLEK 100 (109)
.--+++++..|..+|+..|..+|++|||=.
T Consensus 26 T~~a~~aL~~A~~~A~~~~h~~I~~EHLLl 55 (171)
T 3zri_A 26 NAQSKLALEQAASLCIERQHPEVTLEHYLD 55 (171)
T ss_dssp CHHHHHHHHHHHHHHHHHTCSEECHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 335789999999999999999999999854
No 50
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=58.76 E-value=7.9 Score=26.17 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhhCCCccccchHH
Q 033891 74 VTEAVQRAAAIAEAEGVSKIEATHLE 99 (109)
Q Consensus 74 V~EAv~RA~~eA~~Eg~~~levehLE 99 (109)
++.++.+|..+|+.-|+.+|++|||=
T Consensus 86 ~~~vl~~A~~~A~~~~~~~v~~eHlL 111 (145)
T 3fes_A 86 SKQILELSGMFANKLKTNYIGTEHIL 111 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 45566788888888899999999983
No 51
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=56.04 E-value=9.3 Score=25.75 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhCCCccccchHH
Q 033891 75 TEAVQRAAAIAEAEGVSKIEATHLE 99 (109)
Q Consensus 75 ~EAv~RA~~eA~~Eg~~~levehLE 99 (109)
++++.+|..+|+.-|+.+|++|||-
T Consensus 87 ~~vL~~A~~~a~~~~~~~i~~eHlL 111 (146)
T 3fh2_A 87 KKVLELSLREGLQMGHKYIGTEFLL 111 (146)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCcHHHHH
Confidence 4566778888888899999999984
No 52
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=55.58 E-value=51 Score=24.14 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=34.6
Q ss_pred HHhhhccCCCccCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHH
Q 033891 40 FLLHQAGAGTSKKNRPTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLER 100 (109)
Q Consensus 40 ~~~~~~~~~~s~k~~~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEK 100 (109)
.++.|+.+. +.||.+|+..+..|+.-+..--+..|...++...-..++..+++-
T Consensus 11 kvLkqv~p~-------~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~ 64 (192)
T 2jss_A 11 KVLKQTHPD-------TGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQT 64 (192)
T ss_dssp HHHHHHCSS-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHH
T ss_pred HHHcccCCC-------CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 455566544 469999998777766555444444455455445566788888773
No 53
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=48.78 E-value=78 Score=23.31 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=33.5
Q ss_pred ccchHHHHHHHHHHH---H---HHHHHHHHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 57 SANANALKLSCELLR---V---FVTEAVQRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 57 kIs~dAl~L~aeyL~---i---FV~EAv~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
.++++++..++++.. = .+...+.+|...|. +...|+.+|+++++.++
T Consensus 218 ~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 218 TYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp SCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 578888888888876 2 23345556666654 66789999999888765
No 54
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=48.14 E-value=18 Score=21.87 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhhhhhh
Q 033891 68 ELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQLL 106 (109)
Q Consensus 68 eyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIlPQLL 106 (109)
.=|.-.++||...|+.. +...|+.+||++.+.+++
T Consensus 40 ADi~~l~~eA~~~a~~~----~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 40 AEVKGVCTEAGMYALRE----RRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHT----TCSEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHH
Confidence 33556788888877753 567899999999887654
No 55
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=45.77 E-value=42 Score=22.27 Aligned_cols=50 Identities=4% Similarity=0.029 Sum_probs=30.8
Q ss_pred CccchHHHHHHHHHHH--HHHHHHHHHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 56 TSANANALKLSCELLR--VFVTEAVQRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 56 TkIs~dAl~L~aeyL~--iFV~EAv~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
.++.+.++..+++.+. ---.+.+.++.......+++.|+.++|.+++-.+
T Consensus 17 ~~l~~~~l~~~~~~l~~~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~ 68 (180)
T 3mse_B 17 SNIRNIIINIMAHELSVINNHIKYINELFYKLDTNHNGSLSHREIYTVLASV 68 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHc
Confidence 4566667776666654 2222334444444445678899999998887654
No 56
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=45.48 E-value=44 Score=19.48 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=24.8
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHH
Q 033891 56 TSANANALKLSCELLRVFVTEAVQRAAA 83 (109)
Q Consensus 56 TkIs~dAl~L~aeyL~iFV~EAv~RA~~ 83 (109)
..-.++++.++-+++.-|+.+-+.+|.+
T Consensus 17 ~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 17 QNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3568899999999999999999999874
No 57
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=42.64 E-value=24 Score=24.18 Aligned_cols=50 Identities=8% Similarity=0.082 Sum_probs=31.0
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 56 TSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 56 TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
+++.+.++..+++.|.---.+.+.+........+++.|+.++|.+++..+
T Consensus 37 ~~lk~~~l~~i~~~l~~~e~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~ 86 (197)
T 3pm8_A 37 NELKKIALTIIAKHLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKI 86 (197)
T ss_dssp CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHh
Confidence 45556666666655543333444444444445688999999999887654
No 58
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=42.07 E-value=18 Score=23.80 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhhCCCccccchHH
Q 033891 75 TEAVQRAAAIAEAEGVSKIEATHLE 99 (109)
Q Consensus 75 ~EAv~RA~~eA~~Eg~~~levehLE 99 (109)
...+.+|..+|+.-|+.+|.++||=
T Consensus 85 ~~~l~~A~~~A~~~~~~~i~~ehLL 109 (143)
T 1k6k_A 85 QRVLQRAVFHVQSSGRNEVTGANVL 109 (143)
T ss_dssp HHHHHHHHHHHHSSSCSCBCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHH
Confidence 4556778888888889999999973
No 59
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=42.03 E-value=51 Score=22.21 Aligned_cols=48 Identities=6% Similarity=0.059 Sum_probs=30.7
Q ss_pred CccchHHHHHHHHHHHHHH---HHHHHHHHHHHHhhCCCccccchHHHhhhh
Q 033891 56 TSANANALKLSCELLRVFV---TEAVQRAAAIAEAEGVSKIEATHLERILPQ 104 (109)
Q Consensus 56 TkIs~dAl~L~aeyL~iFV---~EAv~RA~~eA~~Eg~~~levehLEKIlPQ 104 (109)
..++++++..+.++..==+ ...+.++...+..++ ..|+.+++++++.|
T Consensus 192 ~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~~ 242 (242)
T 3bos_A 192 LQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLRL 242 (242)
T ss_dssp CCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhhC
Confidence 4678888888777654222 233444554444344 56999999998754
No 60
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=41.88 E-value=88 Score=22.92 Aligned_cols=50 Identities=18% Similarity=0.318 Sum_probs=37.9
Q ss_pred ccchHHHHHHHHHH---------H---HHHHHHHHHHHHHHHhhCCCccccchHHHhhhhhh
Q 033891 57 SANANALKLSCELL---------R---VFVTEAVQRAAAIAEAEGVSKIEATHLERILPQLL 106 (109)
Q Consensus 57 kIs~dAl~L~aeyL---------~---iFV~EAv~RA~~eA~~Eg~~~levehLEKIlPQLL 106 (109)
.++++++..++++. . -.+...+.+|...|..++...|+.+|+.+++..+.
T Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 214 SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 67888988888887 2 23456667777777777888999999998876543
No 61
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=41.86 E-value=21 Score=23.58 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhCCCccccchHH
Q 033891 74 VTEAVQRAAAIAEAEGVSKIEATHLE 99 (109)
Q Consensus 74 V~EAv~RA~~eA~~Eg~~~levehLE 99 (109)
+...+.+|..+|+.-|..+|..|||=
T Consensus 84 ~~~vL~~A~~~A~~~~~~~i~~ehlL 109 (150)
T 2y1q_A 84 AKKVIELSMDEARKLGHSYVGTEHIL 109 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHH
Confidence 44566778888888889999999973
No 62
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=39.79 E-value=24 Score=22.37 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=30.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH-HHhhCCCccccchHHHh
Q 033891 59 NANALKLSCELLRVFVTEAVQRAAAI-AEAEGVSKIEATHLERI 101 (109)
Q Consensus 59 s~dAl~L~aeyL~iFV~EAv~RA~~e-A~~Eg~~~levehLEKI 101 (109)
++||...+.+ +=-|||--+.|.++. |+..|...|++|-+...
T Consensus 7 t~EAe~~Lkk-IP~FVR~kvrr~tE~~Are~G~~~IT~ev~~~A 49 (63)
T 2kru_A 7 TAEAEKMLGK-VPFFVRKKVRKNTDNYAREIGEPVVTADVFRKA 49 (63)
T ss_dssp CHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHTCSEECHHHHHHH
T ss_pred CHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHH
Confidence 3444444444 335999999999986 77889999999988754
No 63
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=38.71 E-value=19 Score=28.95 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhhCCCccccchHHH
Q 033891 74 VTEAVQRAAAIAEAEGVSKIEATHLER 100 (109)
Q Consensus 74 V~EAv~RA~~eA~~Eg~~~levehLEK 100 (109)
+++++..|..+|+..|..+|++|||=-
T Consensus 10 a~~al~~A~~~A~~~~h~~v~~eHLLl 36 (468)
T 3pxg_A 10 AQKVLALAQEEALRLGHNNIGTEHILL 36 (468)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 678899999999999999999999843
No 64
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=38.12 E-value=26 Score=23.01 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhCCCccccchHH
Q 033891 74 VTEAVQRAAAIAEAEGVSKIEATHLE 99 (109)
Q Consensus 74 V~EAv~RA~~eA~~Eg~~~levehLE 99 (109)
+...+.+|..+|+.-++.+|.++||=
T Consensus 87 ~~~vl~~A~~~a~~~~~~~i~~ehlL 112 (148)
T 1khy_A 87 LVRVLNLCDKLAQKRGDNFISSELFV 112 (148)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHH
Confidence 44556778888887889999999973
No 65
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=36.76 E-value=49 Score=20.67 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCccccchHHHhhhhhh
Q 033891 69 LLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQLL 106 (109)
Q Consensus 69 yL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIlPQLL 106 (109)
=|.-.++||...|+.. +...|+.+|+++.+-+++
T Consensus 39 Dl~~l~~eAa~~a~r~----~~~~i~~~df~~Al~~v~ 72 (88)
T 3vlf_B 39 ELRSVCTEAGMFAIRA----RRKVATEKDFLKAVDKVI 72 (88)
T ss_dssp HHHHHHHHHHHHHHHH----SCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh----ccccCCHHHHHHHHHHHh
Confidence 3666889998888754 556799999998776554
No 66
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=36.68 E-value=39 Score=23.92 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhCCCccccchHHHhhhhhh
Q 033891 77 AVQRAAAIAEAEGVSKIEATHLERILPQLL 106 (109)
Q Consensus 77 Av~RA~~eA~~Eg~~~levehLEKIlPQLL 106 (109)
.+.+|...|..++...|+.+|+++.+..++
T Consensus 224 l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 224 LVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 344455555556778999999999887654
No 67
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=35.98 E-value=40 Score=24.07 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCccccchHHHhhhhhh
Q 033891 70 LRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQLL 106 (109)
Q Consensus 70 L~iFV~EAv~RA~~eA~~Eg~~~levehLEKIlPQLL 106 (109)
++-.+++|..+| -.++...|+.+|+++++..++
T Consensus 227 i~~l~~~a~~~a----~~~~~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 227 LKAICTEAGMNA----IRELRDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp HHHHHHHHHHHH----HHTTCSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHhccCcCCHHHHHHHHHHHH
Confidence 334445554444 445778899999999887653
No 68
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=35.92 E-value=27 Score=24.90 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHH-hhCCCccccchHH
Q 033891 75 TEAVQRAAAIAE-AEGVSKIEATHLE 99 (109)
Q Consensus 75 ~EAv~RA~~eA~-~Eg~~~levehLE 99 (109)
.+.+.+|..+|+ .-|+.+|.+|||=
T Consensus 104 ~~vL~~A~~~A~l~~gd~~I~teHLL 129 (171)
T 3zri_A 104 VELLQEAWLLSSTELEQAELRSGAIF 129 (171)
T ss_dssp HHHHHHHHHHHHTTTCCSSBCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEcHHHHH
Confidence 456778899998 8899999999983
No 69
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=34.86 E-value=66 Score=20.32 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 77 AVQRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 77 Av~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
.+.++.......++|.|+.++|.+++..+
T Consensus 80 ~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 108 (143)
T 2obh_A 80 EILKAFKLFDDDETGKISFKNLKRVAKEL 108 (143)
T ss_dssp HHHHHHHHHCTTCSSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 34444444455788999999999988654
No 70
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=34.56 E-value=30 Score=22.74 Aligned_cols=50 Identities=8% Similarity=0.066 Sum_probs=27.7
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCccccchHHHhhhhh
Q 033891 55 PTSANANALKLSCELLRVFVTEAVQRAAAIAEAE-GVSKIEATHLERILPQL 105 (109)
Q Consensus 55 ~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~E-g~~~levehLEKIlPQL 105 (109)
+.++++..+.-+++... |-.+-+.+........ +++.|+.+++.+++..+
T Consensus 5 ~s~l~~~~l~~l~~~~~-~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~ 55 (193)
T 1bjf_A 5 NSKLRPEVMQDLLESTD-FTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNF 55 (193)
T ss_dssp CCCCCHHHHHHHHHHSS-CCHHHHHHHHHHHHHHSTTSEEEHHHHHHHHTTT
T ss_pred cccCCHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHh
Confidence 34566666666554421 2333333333333334 67888888888876544
No 71
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=34.53 E-value=23 Score=22.35 Aligned_cols=41 Identities=10% Similarity=0.076 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHhhCCCccccchHHHh
Q 033891 60 ANALKLSCELLRVFVTEAVQRAAAI-AEAEGVSKIEATHLERI 101 (109)
Q Consensus 60 ~dAl~L~aeyL~iFV~EAv~RA~~e-A~~Eg~~~levehLEKI 101 (109)
+||...+.+ +=-|||--+.|.++. |+..|...|++|-+...
T Consensus 7 ~EAe~~Lkk-IP~FVR~kvrr~tE~~Are~G~~~IT~ev~~~A 48 (62)
T 2l09_A 7 SEAKTKLKN-IPFFARSQAKARIEQLARQAEQDIVTPELVEQA 48 (62)
T ss_dssp HHHHHHHHT-SCGGGHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred HHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHH
Confidence 344444433 334999999999986 77788999999988753
No 72
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=33.98 E-value=73 Score=23.40 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=33.3
Q ss_pred CCccchHHHHHHHHHHHHH--------------------HHH--HHHHH-HHHHHhhCCCccccchHHHhhhhhh
Q 033891 55 PTSANANALKLSCELLRVF--------------------VTE--AVQRA-AAIAEAEGVSKIEATHLERILPQLL 106 (109)
Q Consensus 55 ~TkIs~dAl~L~aeyL~iF--------------------V~E--Av~RA-~~eA~~Eg~~~levehLEKIlPQLL 106 (109)
+..++++++..++++..-. .|. .+.|. ...|.-+|...|+.+|++.+++..+
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl 298 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDIL 298 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 4568888888877765422 121 12222 2234557888999999999887654
No 73
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=33.10 E-value=1.3e+02 Score=21.45 Aligned_cols=46 Identities=15% Similarity=0.048 Sum_probs=22.8
Q ss_pred ccchHHHHHHHHHHH---------------HHHHHHHHHHHHHHHhhCCCccccchHHHhh
Q 033891 57 SANANALKLSCELLR---------------VFVTEAVQRAAAIAEAEGVSKIEATHLERIL 102 (109)
Q Consensus 57 kIs~dAl~L~aeyL~---------------iFV~EAv~RA~~eA~~Eg~~~levehLEKIl 102 (109)
+++++++..+.+|+. -.+..++.++....-..++..++.+++..|.
T Consensus 223 ~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~~i~ 283 (309)
T 3syl_A 223 QMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALSTIA 283 (309)
T ss_dssp EECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHHEEC
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHhhcc
Confidence 567777777777643 2334444433332222244566666665544
No 74
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=32.75 E-value=1.2e+02 Score=25.08 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=33.2
Q ss_pred CCccchHHHHHHHHHHHH----------HHHH---HHHHHHHHHHhhCCCccccchHHHhh
Q 033891 55 PTSANANALKLSCELLRV----------FVTE---AVQRAAAIAEAEGVSKIEATHLERIL 102 (109)
Q Consensus 55 ~TkIs~dAl~L~aeyL~i----------FV~E---Av~RA~~eA~~Eg~~~levehLEKIl 102 (109)
...++++|+..+.+|..- -+|+ .+.+|...|+.++...|+.+|+++.+
T Consensus 312 ~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~ 372 (604)
T 3k1j_A 312 IPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAV 372 (604)
T ss_dssp SCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHH
Confidence 347899999988887641 1222 33444555667888899999998876
No 75
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=32.01 E-value=1e+02 Score=19.82 Aligned_cols=45 Identities=9% Similarity=0.028 Sum_probs=36.8
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHH
Q 033891 55 PTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLE 99 (109)
Q Consensus 55 ~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLE 99 (109)
.-|++.+|+..+.|..+-|...-+.-+..-|.--+...|.++|++
T Consensus 23 ~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiq 67 (77)
T 2hue_B 23 DLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQ 67 (77)
T ss_dssp SCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHH
Confidence 368999999999999999999988888777655566677777775
No 76
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=31.56 E-value=46 Score=21.15 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=24.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 59 NANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 59 s~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
.+.++..++..+.---.+.+.+........+++.|+.+++.+++..+
T Consensus 10 ~~~~~~~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~ 56 (166)
T 2aao_A 10 KKMALRVIAESLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRV 56 (166)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHHGGGG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHh
Confidence 33444444443322222223333333344677888888888877654
No 77
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=31.48 E-value=60 Score=19.46 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 78 VQRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 78 v~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
+.++......++++.|+.++|.+++..+
T Consensus 43 l~~~F~~~D~d~~G~I~~~el~~~l~~~ 70 (108)
T 2pvb_A 43 VKKAFYVIDQDKSGFIEEDELKLFLQNF 70 (108)
T ss_dssp HHHHHHHHCTTCSSSBCHHHHHTGGGGT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence 3344444455788999999999988765
No 78
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=31.10 E-value=54 Score=19.71 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=19.1
Q ss_pred HHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 79 QRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 79 ~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
.++......++++.|+.++|.+++..+
T Consensus 45 ~~~F~~~D~d~~G~I~~~el~~~l~~~ 71 (109)
T 1bu3_A 45 KKAFFVIDQDKSGFIEEDELKLFLQVF 71 (109)
T ss_dssp HHHHHHHCTTCSSSEEHHHHHTHHHHH
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 333444445778899999999888765
No 79
>1mzp_A 50S ribosomal protein L1P; ribosome, RNA-protein complex; 2.65A {Sulfolobus acidocaldarius} SCOP: e.24.1.1 PDB: 1pnu_5 1pny_5 1vor_7 1vou_7 1vow_7 1voy_7 1vp0_7 3e1b_Z 3e1d_Z
Probab=30.85 E-value=27 Score=26.15 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=20.6
Q ss_pred HHHhhCCC-ccccchHHHhhh------hhhcCC
Q 033891 84 IAEAEGVS-KIEATHLERILP------QLLLDF 109 (109)
Q Consensus 84 eA~~Eg~~-~levehLEKIlP------QLLLDF 109 (109)
+|++.|.. ++..++|+||-. .+..||
T Consensus 75 ~A~~aGad~~vg~~~L~ki~~~kk~~k~~~~~f 107 (217)
T 1mzp_A 75 YAKKASPKVVITREELQKLQGQKRPVKKLARQN 107 (217)
T ss_dssp HHHHTCCSEECCHHHHHHHTTCHHHHHHHHHSC
T ss_pred HHHhcCCCeeeCHHHHHHHHhhHHhhhhchhhC
Confidence 45667886 999999999977 676776
No 80
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=30.80 E-value=51 Score=21.57 Aligned_cols=49 Identities=12% Similarity=0.132 Sum_probs=22.2
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCccccchHHHhhhhh
Q 033891 56 TSANANALKLSCELLRVFVTEAVQRAAAIAEAE-GVSKIEATHLERILPQL 105 (109)
Q Consensus 56 TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~E-g~~~levehLEKIlPQL 105 (109)
.+++++.+.-+.+-+. |-.+-+.+........ +++.|+.+++.+++-.+
T Consensus 6 ~~l~~~el~~~~~~~~-~~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~ 55 (190)
T 2l2e_A 6 SKLSQDQLQDLVRSTR-FDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQF 55 (190)
T ss_dssp CCSCHHHHHHHHHHHC-SCSHHHHHHHHHHHHHSCCCEECHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHh
Confidence 3455555444433321 2222333333333334 46666666666655443
No 81
>2zkr_5 60S ribosomal protein L10A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=29.64 E-value=23 Score=26.44 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=20.1
Q ss_pred HHHhhCCCccccchHHHhhh------hhhcCC
Q 033891 84 IAEAEGVSKIEATHLERILP------QLLLDF 109 (109)
Q Consensus 84 eA~~Eg~~~levehLEKIlP------QLLLDF 109 (109)
+|+..|..++..++|+||-- .++.||
T Consensus 71 ~A~~aGa~~vg~~~L~ki~~~kk~~k~~~~~f 102 (212)
T 2zkr_5 71 RAEEVADDVLDEDELEELGGDDDAAKDLADDT 102 (212)
T ss_dssp HHHHHTSCCCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHhcCCCEeCHHHHHHHHhhHHhhhcccccC
Confidence 45556888999999999976 676665
No 82
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=29.23 E-value=52 Score=23.24 Aligned_cols=29 Identities=34% Similarity=0.363 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCccccchHHHhh
Q 033891 70 LRVFVTEAVQRAAAIAEAEGVSKIEATHLERIL 102 (109)
Q Consensus 70 L~iFV~EAv~RA~~eA~~Eg~~~levehLEKIl 102 (109)
|+-.+++|+..| ..++...|+.+||++++
T Consensus 225 l~~~~~~a~~~a----~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 225 LENLLNEAALLA----AREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHH----HHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHH----HHhcCCCcCHHHHHHHh
Confidence 334455554444 34566789999999875
No 83
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=28.88 E-value=56 Score=24.59 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=32.8
Q ss_pred CccchHHHHHHHHHHHHHH---HHHHHHHHHHHHhhCCCccccchHHHhhhhhhcC
Q 033891 56 TSANANALKLSCELLRVFV---TEAVQRAAAIAEAEGVSKIEATHLERILPQLLLD 108 (109)
Q Consensus 56 TkIs~dAl~L~aeyL~iFV---~EAv~RA~~eA~~Eg~~~levehLEKIlPQLLLD 108 (109)
..++.+++..++...+=-. .-.+.|+...|..++.+.|+.+++++++..+-.|
T Consensus 198 ~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~ 253 (334)
T 1in4_A 198 VEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNID 253 (334)
T ss_dssp CCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCC
T ss_pred CCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCC
Confidence 3466666666655432222 2234455556666777889999999998876543
No 84
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=28.75 E-value=51 Score=23.81 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=15.8
Q ss_pred HHHHHHHhhCCCccccchHHHhh
Q 033891 80 RAAAIAEAEGVSKIEATHLERIL 102 (109)
Q Consensus 80 RA~~eA~~Eg~~~levehLEKIl 102 (109)
+|+..|..++...|+.+||++++
T Consensus 255 ~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 255 EAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHhCCCCcCHHHHHHHh
Confidence 33334444566789999999875
No 85
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=28.75 E-value=71 Score=19.10 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=19.7
Q ss_pred HHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 79 QRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 79 ~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
.++......++++.|+.++|.+++..+
T Consensus 45 ~~~F~~~D~d~~G~I~~~el~~~l~~~ 71 (110)
T 1pva_A 45 KKVFKAIDADASGFIEEEELKFVLKSF 71 (110)
T ss_dssp HHHHHHHCTTCSSSBCHHHHHTGGGGT
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 344444455788999999999988765
No 86
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=28.61 E-value=63 Score=19.29 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=19.2
Q ss_pred HHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 79 QRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 79 ~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
.++......++++.|+.++|.+++..+
T Consensus 44 ~~~F~~~D~d~~G~I~~~el~~~l~~~ 70 (109)
T 1rwy_A 44 KKVFHILDKDKSGFIEEDELGSILKGF 70 (109)
T ss_dssp HHHHHHHSTTCSSEECHHHHHTHHHHH
T ss_pred HHHHHHHCCCCCCeEcHHHHHHHHHHH
Confidence 334444455778899999999888765
No 87
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=28.42 E-value=52 Score=20.12 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 66 SCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 66 ~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
++.=|.-.++||...|+.. +...|+.+|++..+-..
T Consensus 33 SGADi~~l~~eAa~~ai~~----~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 33 SGAVIAAIMQEAGLRAVRK----NRYVILQSDLEEAYATQ 68 (82)
T ss_dssp CHHHHHHHHHHHHHHHHHT----TCSEECHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHh----ccCCcCHHHHHHHHHHH
Confidence 3444555778888888754 55789999998766543
No 88
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=27.71 E-value=57 Score=21.80 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=30.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCccccchHHHhhhhh
Q 033891 57 SANANALKLSCELLRVFVTEAVQRAAAIAEAE-GVSKIEATHLERILPQL 105 (109)
Q Consensus 57 kIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~E-g~~~levehLEKIlPQL 105 (109)
+|+.+.+..+.+.+. |..+-+.+........ +++.|+.+++.+++-.+
T Consensus 15 ~l~~~el~~~~~~~~-~~~~~i~~~f~~~d~~~~~G~i~~~ef~~~l~~~ 63 (207)
T 2d8n_A 15 ALSKEILEELQLNTK-FSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKF 63 (207)
T ss_dssp CCCHHHHHHHHHHSS-CCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcC-CCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHh
Confidence 677777776666544 3444444444444445 67888888888877655
No 89
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=27.43 E-value=1.3e+02 Score=23.83 Aligned_cols=51 Identities=25% Similarity=0.375 Sum_probs=33.4
Q ss_pred ccchHHHHHHHHHH-HH---HHHHHHHHHHHHHHhhCCCccccchHHHhhhhhhcC
Q 033891 57 SANANALKLSCELL-RV---FVTEAVQRAAAIAEAEGVSKIEATHLERILPQLLLD 108 (109)
Q Consensus 57 kIs~dAl~L~aeyL-~i---FV~EAv~RA~~eA~~Eg~~~levehLEKIlPQLLLD 108 (109)
.++++++.+++.+- +- ....-+.+|...|..+|.+.|+.+|+++++. |+||
T Consensus 385 ~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~-~~~d 439 (456)
T 2c9o_A 385 NISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISE-LFYD 439 (456)
T ss_dssp CBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHH-HSCC
T ss_pred CCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHH-HhcC
Confidence 46788887777765 21 1222334444556667889999999999874 4445
No 90
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=27.15 E-value=77 Score=24.69 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=36.6
Q ss_pred CccchHHHHHHHHHHHH------HHHHHHHHHHHHHHhh---------CCCccccchHHHhhhhh
Q 033891 56 TSANANALKLSCELLRV------FVTEAVQRAAAIAEAE---------GVSKIEATHLERILPQL 105 (109)
Q Consensus 56 TkIs~dAl~L~aeyL~i------FV~EAv~RA~~eA~~E---------g~~~levehLEKIlPQL 105 (109)
..|+++|+.+++++.-- -.-+.+.||+..|+.+ |..+|+.++++|+.-|.
T Consensus 251 ~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~~ 315 (318)
T 3te6_A 251 HKINNKITQLIAKNVANVSGSTEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSEA 315 (318)
T ss_dssp EECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHHHH
T ss_pred cccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHHH
Confidence 36899999999996433 2446677888877653 33579999999987664
No 91
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=27.04 E-value=37 Score=28.72 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhhCCCccccchHHH
Q 033891 74 VTEAVQRAAAIAEAEGVSKIEATHLER 100 (109)
Q Consensus 74 V~EAv~RA~~eA~~Eg~~~levehLEK 100 (109)
+++++..|..+|+..+..+|++|||-.
T Consensus 10 a~~~l~~A~~~A~~~~h~~i~~eHlLl 36 (758)
T 3pxi_A 10 AQKVLALAQEEALRLGHNNIGTEHILL 36 (758)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 578888999999999999999999854
No 92
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=26.23 E-value=25 Score=26.37 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=20.0
Q ss_pred HHHhhCCCccccchHHHhhh------hhhcCC
Q 033891 84 IAEAEGVSKIEATHLERILP------QLLLDF 109 (109)
Q Consensus 84 eA~~Eg~~~levehLEKIlP------QLLLDF 109 (109)
+|+..|..++..++|+||-. .|..||
T Consensus 71 ~A~~aGa~~vg~~~L~ki~~~kk~~r~l~~~f 102 (219)
T 1i2a_A 71 QAEELGLTVIRKEEIEELGKNKRKLRKIAKAH 102 (219)
T ss_dssp HHHHTTCEEECHHHHHHHHHCHHHHHHHHHHC
T ss_pred HHHHCCCCEEcHHHHHHHHhhhhhhhhchhhC
Confidence 45667888999999999976 665654
No 93
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=25.85 E-value=37 Score=28.56 Aligned_cols=27 Identities=19% Similarity=0.069 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhhCCCccccchHHH
Q 033891 74 VTEAVQRAAAIAEAEGVSKIEATHLER 100 (109)
Q Consensus 74 V~EAv~RA~~eA~~Eg~~~levehLEK 100 (109)
+++++..|..+|+..+..+|++|||=.
T Consensus 6 a~~~l~~A~~~A~~~~h~~i~~eHLLl 32 (758)
T 1r6b_X 6 LELSLNMAFARAREHRHEFMTVEHLLL 32 (758)
T ss_dssp HHHHHHHHHHHHHHTTBSEECHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHH
Confidence 578899999999999999999999854
No 94
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=25.54 E-value=75 Score=19.01 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=18.3
Q ss_pred HHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 79 QRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 79 ~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
.++......+++|.|+.++|.+++-.+
T Consensus 44 ~~~F~~~D~d~~G~i~~~el~~~l~~~ 70 (109)
T 5pal_A 44 KEVFEILDKDQSGFIEEEELKGVLKGF 70 (109)
T ss_dssp HHHHHHHCTTCSSEECHHHHHTHHHHH
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 344444455678888888888887654
No 95
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=25.42 E-value=1.2e+02 Score=19.16 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 76 EAVQRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 76 EAv~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
+.+.++.......++|.|+.++|.+++-.+
T Consensus 101 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~ 130 (169)
T 3qrx_A 101 EEILKAFRLFDDDNSGTITIKDLRRVAKEL 130 (169)
T ss_dssp HHHHHHHHHHCTTCSSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCcCCHHHHHHHHHHc
Confidence 344444444455788999999999987644
No 96
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=25.32 E-value=36 Score=22.27 Aligned_cols=17 Identities=12% Similarity=0.251 Sum_probs=10.0
Q ss_pred CCCccccchHHHhhhhh
Q 033891 89 GVSKIEATHLERILPQL 105 (109)
Q Consensus 89 g~~~levehLEKIlPQL 105 (109)
+++.|+.+++..++..+
T Consensus 39 ~~G~i~~~e~~~~l~~~ 55 (190)
T 1fpw_A 39 PSGQLAREDFVKIYKQF 55 (190)
T ss_dssp TTCCEEHHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHH
Confidence 45666666666655443
No 97
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=25.20 E-value=58 Score=23.54 Aligned_cols=51 Identities=16% Similarity=0.040 Sum_probs=31.8
Q ss_pred CccchHHHHHHHHHHHHHHH---HHHHHHHHHHHhhCCCccccchHHHhhhhhh
Q 033891 56 TSANANALKLSCELLRVFVT---EAVQRAAAIAEAEGVSKIEATHLERILPQLL 106 (109)
Q Consensus 56 TkIs~dAl~L~aeyL~iFV~---EAv~RA~~eA~~Eg~~~levehLEKIlPQLL 106 (109)
..++++++..+++|-.=.++ ..+.++...+...+...|+.++++.++..+-
T Consensus 186 ~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~ 239 (324)
T 1hqc_A 186 VRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALG 239 (324)
T ss_dssp CCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Confidence 35788888888877432333 3344444444445667888899888776543
No 98
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=25.09 E-value=82 Score=18.81 Aligned_cols=26 Identities=8% Similarity=0.203 Sum_probs=19.1
Q ss_pred HHHHHHHhhCCCccccchHHHhhhhh
Q 033891 80 RAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 80 RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
++......++++.|+.++|.+++..+
T Consensus 45 ~~F~~~D~d~~G~I~~~el~~~l~~~ 70 (108)
T 1rro_A 45 DIFRFIDNDQSGYLDGDELKYFLQKF 70 (108)
T ss_dssp HHHHHHCTTCSSEECTHHHHTGGGGT
T ss_pred HHHHHhCCCCCCcCCHHHHHHHHHHH
Confidence 33334445788999999999988765
No 99
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=25.08 E-value=1.3e+02 Score=18.83 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 78 VQRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 78 v~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
+.++.......+++.|+.++|.+++..+
T Consensus 85 l~~~F~~~D~d~~G~I~~~el~~~l~~~ 112 (148)
T 1exr_A 85 LIEAFKVFDRDGNGLISAAELRHVMTNL 112 (148)
T ss_dssp HHHHHHHHSTTCSSCBCHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCcCCHHHHHHHHHHh
Confidence 3344444445788999999999987654
No 100
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=24.95 E-value=37 Score=19.24 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=8.8
Q ss_pred hCCCccccchHHHhh
Q 033891 88 EGVSKIEATHLERIL 102 (109)
Q Consensus 88 Eg~~~levehLEKIl 102 (109)
.+++.|+.+++-.++
T Consensus 50 ~~dg~i~~~ef~~~~ 64 (78)
T 1k9u_A 50 DGDGFIDFNEFISFC 64 (78)
T ss_dssp TCSSSEEHHHHHHHH
T ss_pred CCCCeEcHHHHHHHH
Confidence 455666666665543
No 101
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=24.56 E-value=1.6e+02 Score=19.71 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=36.5
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHH
Q 033891 54 RPTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLE 99 (109)
Q Consensus 54 ~~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLE 99 (109)
..-+++.+|+..+.|-.+-|...-+.-+..-|.--+-..|.+.|++
T Consensus 49 ~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiq 94 (100)
T 2yfv_A 49 EPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQ 94 (100)
T ss_dssp --CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred chhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHH
Confidence 3578999999999999999999988888777655566677777775
No 102
>2xns_C RGS14, regulator of G-protein signaling 14; hydrolase-peptide complex, ADP-ribosylation, arginine finger binding, lipoprotein, nucleotide-binding; HET: GDP SRT; 3.41A {Homo sapiens}
Probab=24.48 E-value=19 Score=21.14 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhCCCccccchHHHhhhhhh
Q 033891 76 EAVQRAAAIAEAEGVSKIEATHLERILPQLL 106 (109)
Q Consensus 76 EAv~RA~~eA~~Eg~~~levehLEKIlPQLL 106 (109)
|-+.||..-.-.+.-+.+..|||++.||-.+
T Consensus 7 EllsraQs~radDQRGLL~KEdLv~~l~df~ 37 (40)
T 2xns_C 7 ELLNRVQSSGAHDQRGLLSNEEVFRALRDFD 37 (40)
T ss_dssp HHHHHHTTCSCCSCSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcccccccccccHHHHHHHhHHHH
Confidence 4455554332234457899999999999754
No 103
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=23.96 E-value=94 Score=18.56 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 78 VQRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 78 v~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
+.++......++++.|+.++|.+++..+
T Consensus 44 l~~~F~~~D~d~~G~i~~~el~~~l~~~ 71 (109)
T 3fs7_A 44 IKKVFGILDQDKSGFIEEEELQLFLKNF 71 (109)
T ss_dssp HHHHHHHHSTTCSSSBCHHHHHTTGGGT
T ss_pred HHHHHHHHCCCCCCeEeHHHHHHHHHHH
Confidence 3334444455788999999999988765
No 104
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=23.73 E-value=32 Score=22.48 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=30.6
Q ss_pred CccchHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 56 TSANANALKLSCELL-RVFVTEAVQRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 56 TkIs~dAl~L~aeyL-~iFV~EAv~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
+++.+.++..++..+ .---.+.+.+........+++.|+.++|.+++.++
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~ 69 (191)
T 3khe_A 19 QKLAQAAMLFMGSKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKL 69 (191)
T ss_dssp CHHHHHHHHHHHHHSSCTTTTHHHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHHH
Confidence 455666666666554 11112233444444455789999999999988765
No 105
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=22.91 E-value=1.7e+02 Score=20.72 Aligned_cols=45 Identities=9% Similarity=0.023 Sum_probs=37.1
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHH
Q 033891 55 PTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLE 99 (109)
Q Consensus 55 ~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLE 99 (109)
.-+++.+|+..+.|..+-|...-+.-+..-|.--+...|.+.|++
T Consensus 82 ~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiq 126 (136)
T 1tzy_C 82 DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126 (136)
T ss_dssp TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHH
Confidence 368999999999999999999988888777655566677788876
No 106
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=22.90 E-value=75 Score=19.19 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=11.4
Q ss_pred HhhCCCccccchHHHhhhhh
Q 033891 86 EAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 86 ~~Eg~~~levehLEKIlPQL 105 (109)
..++++.|+.++|.+++-.+
T Consensus 39 D~d~~G~I~~~El~~~l~~~ 58 (94)
T 2kz2_A 39 DKDGNGYISAAELRHVMTNL 58 (94)
T ss_dssp CTTCCSCBCHHHHHHHHHHH
T ss_pred CCCCcCcCCHHHHHHHHHHh
Confidence 34555666666666665443
No 107
>2wwq_5 50S ribosomal protein L1; ribosomal protein, ribonucleoprotein, nucleotide-binding, protein biosynthesis, translation, zinc-finger; HET: 5MU; 5.80A {Escherichia coli} PDB: 3fik_5 3izt_C* 3izu_C* 3j01_5 3j0t_C* 3j0w_C* 3j0y_C* 3j11_C* 3j12_C* 3j14_C* 3kcr_5 2rdo_9 2gya_2 2gyc_2
Probab=22.86 E-value=47 Score=25.24 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=19.1
Q ss_pred HHHhhCCCccccchH-HHhhhhhhcCC
Q 033891 84 IAEAEGVSKIEATHL-ERILPQLLLDF 109 (109)
Q Consensus 84 eA~~Eg~~~levehL-EKIlPQLLLDF 109 (109)
+|+..|..++..++| +||-..+ +||
T Consensus 86 ~Ak~aGad~vg~edLi~kik~~~-~~f 111 (234)
T 2wwq_5 86 AAKAAGAELVGMEDLADQIKKGE-MNF 111 (234)
T ss_dssp HHHHHTCSEECSHHHHHHHHHTC-CCS
T ss_pred HHHHcCCCEEcHHHHHHHHHcCc-ccC
Confidence 345567789999999 8988775 665
No 108
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=22.17 E-value=67 Score=20.32 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 76 EAVQRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 76 EAv~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
+.+.++.......++|.|+.++|.+++-.+
T Consensus 85 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~~ 114 (159)
T 2ovk_C 85 DEFMEAFKTFDREGQGLISSAEIRNVLKML 114 (159)
T ss_dssp HHHHHHHHHTCTTSSSEECHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHh
Confidence 334444444445788999999999988654
No 109
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=22.06 E-value=1.3e+02 Score=18.58 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 77 AVQRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 77 Av~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
-+..+.......++|.|+.++|.+++..+
T Consensus 97 ~~~~~F~~~D~d~~G~i~~~el~~~l~~~ 125 (161)
T 3fwb_A 97 EIKRAFQLFDDDHTGKISIKNLRRVAKEL 125 (161)
T ss_dssp HHHHHHHHHCTTCSSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCeEeHHHHHHHHHHh
Confidence 34444444445688999999999988654
No 110
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=21.91 E-value=69 Score=20.48 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 76 EAVQRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 76 EAv~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
+.+.+|......+++|+|+.++|.+++..+
T Consensus 83 ~~l~~aF~~~D~d~~G~I~~~El~~~l~~~ 112 (148)
T 2lmt_A 83 EEMREAFKIFDRDGDGFISPAELRFVMINL 112 (148)
T ss_dssp HHHHHHHHHHHSSCSSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcCcCcHHHHHHHHHHc
Confidence 445555555566889999999999988654
No 111
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=21.80 E-value=53 Score=28.39 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhCCCccccchHHH
Q 033891 74 VTEAVQRAAAIAEAEGVSKIEATHLER 100 (109)
Q Consensus 74 V~EAv~RA~~eA~~Eg~~~levehLEK 100 (109)
+++++..|..+|+..+..+|++|||=.
T Consensus 10 a~~al~~A~~~A~~~~h~~i~~eHLLl 36 (854)
T 1qvr_A 10 AREALAQAQVLAQRMKHQAIDLPHLWA 36 (854)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHH
Confidence 578899999999999999999999855
No 112
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=21.75 E-value=71 Score=18.56 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=6.2
Q ss_pred CCCccccchHHHhh
Q 033891 89 GVSKIEATHLERIL 102 (109)
Q Consensus 89 g~~~levehLEKIl 102 (109)
+++.|+.++|.+++
T Consensus 22 ~~G~i~~~el~~~l 35 (92)
T 2kn2_A 22 QNGYISASELRHVM 35 (92)
T ss_dssp CSSEECHHHHHHHH
T ss_pred CCCeEcHHHHHHHH
Confidence 34444444444443
No 113
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=21.53 E-value=68 Score=20.87 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=9.8
Q ss_pred CCCccccchHHHhhhhh
Q 033891 89 GVSKIEATHLERILPQL 105 (109)
Q Consensus 89 g~~~levehLEKIlPQL 105 (109)
+++.|+.+++.+++-.+
T Consensus 39 ~~G~i~~~e~~~~l~~~ 55 (190)
T 1g8i_A 39 PSGQLDAAGFQKIYKQF 55 (190)
T ss_dssp TTSEEEHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHh
Confidence 45666666666655443
No 114
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=21.38 E-value=1.2e+02 Score=19.13 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 76 EAVQRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 76 EAv~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
+.+.++.......++|.|+.++|.+++..+
T Consensus 95 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 124 (166)
T 2mys_B 95 DVIMGAFKVLDPDGKGSIKKSFLEELLTTG 124 (166)
T ss_pred HHHHHHHHHhCCCCCcceeHHHHHHHHHHc
Confidence 334444444455788999999999987643
No 115
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=21.33 E-value=44 Score=22.57 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=14.6
Q ss_pred hhCCCccccchHHHhhhhh
Q 033891 87 AEGVSKIEATHLERILPQL 105 (109)
Q Consensus 87 ~Eg~~~levehLEKIlPQL 105 (109)
..++|.|+.++|.+++-.+
T Consensus 63 ~d~~G~i~~~El~~~l~~~ 81 (191)
T 3k21_A 63 EDGKGYITKEQLKKGLEKD 81 (191)
T ss_dssp TTCSSEECHHHHHHHHHHT
T ss_pred CCCCCCCcHHHHHHHHHHc
Confidence 4578899999998887544
No 116
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=21.29 E-value=1.6e+02 Score=18.30 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhCCCccccchHHHhhhhh
Q 033891 78 VQRAAAIAEAEGVSKIEATHLERILPQL 105 (109)
Q Consensus 78 v~RA~~eA~~Eg~~~levehLEKIlPQL 105 (109)
+.++.......++|.|+.++|.+++..+
T Consensus 98 ~~~~F~~~D~d~~G~I~~~e~~~~l~~~ 125 (162)
T 1top_A 98 LANCFRIFDKNADGFIDIEELGEILRAT 125 (162)
T ss_dssp HHHHHHHHCTTCSSCBCHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 3344444445688999999999887543
No 117
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=20.90 E-value=2.1e+02 Score=20.95 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=36.6
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHH
Q 033891 55 PTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLE 99 (109)
Q Consensus 55 ~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLE 99 (109)
..+++.+|+.++.|..+-|.+.-+.-|..-|.--+-..|.++|++
T Consensus 99 ~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIq 143 (156)
T 3r45_A 99 DFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQ 143 (156)
T ss_dssp CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHH
T ss_pred cceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHH
Confidence 468999999999999999999888877766655566677778775
No 118
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=20.74 E-value=2.4e+02 Score=20.18 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=36.1
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccccchHH
Q 033891 55 PTSANANALKLSCELLRVFVTEAVQRAAAIAEAEGVSKIEATHLE 99 (109)
Q Consensus 55 ~TkIs~dAl~L~aeyL~iFV~EAv~RA~~eA~~Eg~~~levehLE 99 (109)
..+++.+|+.++.|..+-|.+.-+.-+..-|.--+-..|.++|++
T Consensus 83 ~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiq 127 (140)
T 3nqu_A 83 DFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQ 127 (140)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred cceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHH
Confidence 458999999999999999999888877766655555667777765
No 119
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=20.68 E-value=57 Score=17.31 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033891 65 LSCELLRVFVTEAVQRAAAIAE 86 (109)
Q Consensus 65 L~aeyL~iFV~EAv~RA~~eA~ 86 (109)
|..++++.|=+-|+.-|+..|+
T Consensus 2 lfgklikkfgrkaisyavkkar 23 (26)
T 2g9p_A 2 LFGKLIKKFGRKAISYAVKKAR 23 (26)
T ss_dssp HHHHHHHHHTSHHHHHHHHHTT
T ss_pred cHHHHHHHHhHHHHHHHHHHHc
Confidence 5688999999999999887764
No 120
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=20.67 E-value=63 Score=17.29 Aligned_cols=13 Identities=8% Similarity=0.240 Sum_probs=5.8
Q ss_pred CCccccchHHHhh
Q 033891 90 VSKIEATHLERIL 102 (109)
Q Consensus 90 ~~~levehLEKIl 102 (109)
++.|+.+.+-+++
T Consensus 51 dg~i~~~ef~~~~ 63 (67)
T 1tiz_A 51 NGELNADEFTSCI 63 (67)
T ss_dssp SSEECHHHHHHHH
T ss_pred CCcCcHHHHHHHH
Confidence 4444444444433
No 121
>1gng_X Frattide, glycogen synthase kinase-3 beta; transferase, protein kinase, GSK3/frattide complex, phosphorylated, active; HET: PTR; 2.6A {Homo sapiens}
Probab=20.30 E-value=1e+02 Score=17.93 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHH--HHHHHHHHHH
Q 033891 59 NANALKLSCELLRV--FVTEAVQRAA 82 (109)
Q Consensus 59 s~dAl~L~aeyL~i--FV~EAv~RA~ 82 (109)
..|.-++..++|+- +++|||.|-.
T Consensus 9 ~ddP~~lLQ~Llr~G~LIkEAVrRlq 34 (39)
T 1gng_X 9 DDDPHRLLQQLVLSGNLIKEAVRRLH 34 (39)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcHHHHHHHHHH
Confidence 56677788888875 7999999864
No 122
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Probab=20.12 E-value=87 Score=17.24 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=9.0
Q ss_pred hCC-CccccchHHHhhhh
Q 033891 88 EGV-SKIEATHLERILPQ 104 (109)
Q Consensus 88 Eg~-~~levehLEKIlPQ 104 (109)
+++ +.|+.++|.+++-.
T Consensus 18 d~~~G~i~~~el~~~l~~ 35 (76)
T 1qx2_A 18 EGDPNQISKEELKLVMQT 35 (76)
T ss_dssp SSCTTSEEHHHHHHHHHH
T ss_pred CCCcCeECHHHHHHHHHH
Confidence 444 55555555555443
Done!