BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033892
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SAW|A Chain A, X-Ray Structure Of Homo Sapiens Protein Flj36880
pdb|1SAW|B Chain B, X-Ray Structure Of Homo Sapiens Protein Flj36880
Length = 225
Score = 101 bits (252), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 63/92 (68%)
Query: 4 ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPL 63
AS + + + G IV VGRNYA H +E+ +AV EPVLFLKP+++Y G I +P
Sbjct: 7 ASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYT 66
Query: 64 DSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
+LHHE+EL VV+G++ R VPE AMDYVGG+
Sbjct: 67 RNLHHELELGVVMGKRCRAVPEAAAMDYVGGY 98
>pdb|3RR6|A Chain A, Structure Of A Putative Uncharacterized Protein From
Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 265
Score = 82.4 bits (202), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 56/80 (70%)
Query: 16 TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
+K+VA+G+NYAAHA E+G P+ PV+F+KP +S +G G I++P +HHE ELA+V
Sbjct: 65 SKVVAMGKNYAAHAAEMGGDPPESPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELAIV 124
Query: 76 IGQKARDVPETTAMDYVGGF 95
IG+ +DVP A + + G+
Sbjct: 125 IGRPCKDVPAARAAENILGY 144
>pdb|3V77|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|B Chain B, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|C Chain C, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|D Chain D, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|E Chain E, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|F Chain F, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
Length = 224
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 45/62 (72%)
Query: 17 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
KIV VGRNYAAHAKEL N +P P+LF+KP SS + G +P S+HHE+E+A++I
Sbjct: 17 KIVCVGRNYAAHAKELNNPIPSSPILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILI 76
Query: 77 GQ 78
G+
Sbjct: 77 GK 78
>pdb|1I7O|A Chain A, Crystal Structure Of Hpce
pdb|1I7O|B Chain B, Crystal Structure Of Hpce
pdb|1I7O|C Chain C, Crystal Structure Of Hpce
pdb|1I7O|D Chain D, Crystal Structure Of Hpce
pdb|1GTT|A Chain A, Crystal Structure Of Hpce
pdb|1GTT|B Chain B, Crystal Structure Of Hpce
pdb|1GTT|C Chain C, Crystal Structure Of Hpce
pdb|1GTT|D Chain D, Crystal Structure Of Hpce
Length = 429
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 53/78 (67%)
Query: 18 IVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIG 77
+ A+G NYA HA EL P+EP++FLK ++ G+ T P+ ++ +H+E EL VVIG
Sbjct: 225 LFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIG 284
Query: 78 QKARDVPETTAMDYVGGF 95
++AR+V E AMDYV G+
Sbjct: 285 KQARNVSEADAMDYVAGY 302
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 35 AVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGG 94
A PK V F+KP ++ +G G I P L +A+++G+ A V E A +Y+ G
Sbjct: 30 APPKTAVWFIKPRNTVIGCGEPIPFPQGEKVLSGAT-VALIVGKTATKVREEDAAEYIAG 88
Query: 95 F 95
+
Sbjct: 89 Y 89
>pdb|1NR9|A Chain A, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|B Chain B, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|C Chain C, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|D Chain D, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
Length = 223
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 49/80 (61%)
Query: 16 TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
+K+V VG NYA H KE G+AVP+EPVLF+KP ++ + +P S+HHEVELAV+
Sbjct: 19 SKVVCVGSNYAKHIKEXGSAVPEEPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVL 78
Query: 76 IGQKARDVPETTAMDYVGGF 95
IG R E + G+
Sbjct: 79 IGATLRQATEEHVRKAIAGY 98
>pdb|1WZO|A Chain A, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|B Chain B, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|C Chain C, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|D Chain D, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
Length = 246
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 53/86 (61%)
Query: 17 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
KI+ V NYA HA+ELG + P+EP LF KP +S L + G + P +H+EVELAVV+
Sbjct: 45 KILGVALNYADHAEELGLSRPEEPALFWKPNTSLLPHKGVVLYPKGARFVHYEVELAVVV 104
Query: 77 GQKARDVPETTAMDYVGGFIFVKILL 102
G+ + V A+DYV G+ L+
Sbjct: 105 GRPMKRVRAKDALDYVLGYTIANDLV 130
>pdb|2DFU|A Chain A, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|B Chain B, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|C Chain C, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|D Chain D, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
Length = 264
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 57/93 (61%), Gaps = 13/93 (13%)
Query: 16 TKIVAVGRNYAAHAKELGNA----VPKEPVLFLKPTSSYLGNG------GTIE-VPHPL- 63
TKIV VGRNY H +E+G+ +PKEP LFLK ++ G GT E VP+P
Sbjct: 48 TKIVCVGRNYREHIREMGHDFGEDLPKEPGLFLKGPNALARPGNPRDPWGTAEPVPYPFF 107
Query: 64 -DSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
+ LH+E ELAVV+G + R VP A+D+V G+
Sbjct: 108 TEELHYEGELAVVVGDRMRHVPPEKALDHVLGY 140
>pdb|3S52|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
pdb|3S52|B Chain B, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
pdb|3S52|C Chain C, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
pdb|3S52|D Chain D, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
Length = 221
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%)
Query: 16 TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
K+V VG NYA H KE G+ EPVLF+KP ++ + +P S+HHE+ELAV+
Sbjct: 20 NKVVCVGSNYAEHIKEXGSTASVEPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVL 79
Query: 76 IGQKARDVPETTAMDYVGGF 95
IG + E + G+
Sbjct: 80 IGTPLKQASEDRVARAIAGY 99
>pdb|3QDF|A Chain A, Crystal Structure Of 2-Hydroxyhepta-2,4-Diene-1,7-Dioate
Isomerase From Mycobacterium Marinum
Length = 268
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 16 TKIVAVGRNYAAHAKELGN---AVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVEL 72
+K+V VG+NY H E+G P +PV+FLKP ++ +G I +P +H E EL
Sbjct: 65 SKVVCVGKNYTDHIAEMGGQTGPTPADPVIFLKPNTAIVGPNVPIRLPANASPVHFEGEL 124
Query: 73 AVVIGQKARDVPETTAMDYVGGF 95
A+VIG+ +DV A+D + G+
Sbjct: 125 AIVIGRPCKDVSAAQAVDNILGY 147
>pdb|1NKQ|A Chain A, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|B Chain B, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|C Chain C, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|D Chain D, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|E Chain E, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|F Chain F, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
Length = 259
Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 26/97 (26%)
Query: 12 IQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYL-------------------- 51
++A KI+ +GRNYAAH KEL N+ PK+P FLKPTSS +
Sbjct: 6 LKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNG 65
Query: 52 -----GNGGTIEVPHPLDSLHHEVELAVVIGQKARDV 83
N G I +P + +HHE+ELA+++ + +V
Sbjct: 66 LNEDGTNPGPIFIPRGV-KVHHEIELALIVSKHLSNV 101
>pdb|4DBF|A Chain A, Crystal Structures Of Cg1458
pdb|4DBF|B Chain B, Crystal Structures Of Cg1458
pdb|4DBH|A Chain A, Crystal Structure Of Cg1458 With Inhibitor
pdb|4DBH|B Chain B, Crystal Structure Of Cg1458 With Inhibitor
Length = 288
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 16 TKIVAVGRNYAAHAKEL--GNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELA 73
+K+VA+GRNYA H E+ +A P LFLKP ++ G I +P + E ELA
Sbjct: 81 SKVVAIGRNYADHVAEVFKKSAESLPPTLFLKPPTAVTGPESPIRIPSFATKVEFEGELA 140
Query: 74 VVIGQKARDVPETTAMDYVGGFIFVK 99
VVIG+ ++V V GF +
Sbjct: 141 VVIGKPCKNVKADDWKSVVLGFTIIN 166
>pdb|3R6O|A Chain A, Crystal Structure Of A Probable
2-Hydroxyhepta-2,4-Diene-1, 7- Dioateisomerase From
Mycobacterium Abscessus
Length = 329
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 17 KIVAVGRNYAAHAKELGNAVPK--EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAV 74
+++A+G NY H+ + + +PK +PV+F+K +S G + P +L +E+E+AV
Sbjct: 105 QVIALGFNYPTHS-DTDSPLPKMADPVVFMKSPTSISGPRDAVIAPRTSHALDYEIEIAV 163
Query: 75 VIGQKARDVPETTAMDYVGGFIFVK 99
VIG+ + + A+ +V G++
Sbjct: 164 VIGKPGYRIERSQAIKHVAGYMLAN 188
>pdb|1P7D|A Chain A, Crystal Structure Of The Lambda Integrase (Residues
75-356) Bound To Dna
pdb|1P7D|B Chain B, Crystal Structure Of The Lambda Integrase (Residues
75-356) Bound To Dna
Length = 283
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 70 VELAVVIGQKARDVPETTAMDYVGGFIFVK 99
+ELAVV GQ+ D+ E D V G+++V+
Sbjct: 130 MELAVVTGQRVGDLCEMKWSDIVDGYLYVE 159
>pdb|1AE9|A Chain A, Structure Of The Lambda Integrase Catalytic Core
pdb|1AE9|B Chain B, Structure Of The Lambda Integrase Catalytic Core
Length = 179
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 70 VELAVVIGQKARDVPETTAMDYVGGFIFVK 99
+ELAVV GQ+ D+ E D V G+++V+
Sbjct: 27 MELAVVTGQRVGDLCEMKWSDIVDGYLYVE 56
>pdb|1Z19|A Chain A, Crystal Structure Of A Lambda Integrase(75-356) Dimer
Bound To A Coc' Core Site
pdb|1Z19|B Chain B, Crystal Structure Of A Lambda Integrase(75-356) Dimer
Bound To A Coc' Core Site
Length = 283
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 71 ELAVVIGQKARDVPETTAMDYVGGFIFVK 99
ELAVV GQ+ D+ E D V G+++V+
Sbjct: 131 ELAVVTGQRVGDLCEXKWSDIVDGYLYVE 159
>pdb|1Z1B|A Chain A, Crystal Structure Of A Lambda Integrase Dimer Bound To A
Coc' Core Site
pdb|1Z1B|B Chain B, Crystal Structure Of A Lambda Integrase Dimer Bound To A
Coc' Core Site
Length = 356
Score = 29.3 bits (64), Expect = 0.61, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 70 VELAVVIGQKARDVPETTAMDYVGGFIFVK 99
+ELAVV GQ+ D+ E D V G+++V+
Sbjct: 203 MELAVVTGQRVGDLCEMKWSDIVDGYLYVE 232
>pdb|1Z1G|A Chain A, Crystal Structure Of A Lambda Integrase Tetramer Bound To
A Holliday Junction
pdb|1Z1G|C Chain C, Crystal Structure Of A Lambda Integrase Tetramer Bound To
A Holliday Junction
pdb|1Z1G|B Chain B, Crystal Structure Of A Lambda Integrase Tetramer Bound To
A Holliday Junction
pdb|1Z1G|D Chain D, Crystal Structure Of A Lambda Integrase Tetramer Bound To
A Holliday Junction
Length = 356
Score = 28.9 bits (63), Expect = 0.70, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 71 ELAVVIGQKARDVPETTAMDYVGGFIFVK 99
ELAVV GQ+ D+ E D V G+++V+
Sbjct: 204 ELAVVTGQRVGDLCEXKWSDIVDGYLYVE 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,209,006
Number of Sequences: 62578
Number of extensions: 125294
Number of successful extensions: 262
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 23
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)