Query 033892
Match_columns 109
No_of_seqs 112 out of 1045
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:28:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0179 MhpD 2-keto-4-pentenoa 100.0 2.6E-34 5.7E-39 220.0 9.9 100 6-105 50-151 (266)
2 TIGR02303 HpaG-C-term 4-hydrox 100.0 4.6E-34 1E-38 216.2 9.9 101 3-104 31-131 (245)
3 KOG1535 Predicted fumarylaceto 100.0 1.4E-32 3E-37 202.3 9.1 102 4-105 1-102 (217)
4 PRK10691 hypothetical protein; 100.0 1.2E-30 2.7E-35 194.6 10.2 90 15-104 16-105 (219)
5 PRK15203 4-hydroxyphenylacetat 100.0 1.1E-29 2.5E-34 205.0 10.6 97 8-104 215-311 (429)
6 PRK15203 4-hydroxyphenylacetat 100.0 8.6E-29 1.9E-33 199.9 9.6 88 16-104 3-98 (429)
7 TIGR02305 HpaG-N-term 4-hydrox 99.9 7.3E-27 1.6E-31 172.3 9.8 89 16-104 1-97 (205)
8 PRK12764 hypothetical protein; 99.9 3.4E-26 7.3E-31 187.7 10.5 97 7-104 13-109 (500)
9 PLN02856 fumarylacetoacetase 99.9 6.7E-25 1.5E-29 176.8 8.5 99 4-104 117-244 (424)
10 PF01557 FAA_hydrolase: Fumary 99.9 2.8E-22 6.1E-27 148.1 7.5 88 17-104 1-97 (218)
11 TIGR01266 fum_ac_acetase fumar 99.9 4.7E-22 1E-26 160.1 7.1 90 15-104 117-236 (415)
12 KOG2843 Fumarylacetoacetase [C 99.1 4.5E-11 9.9E-16 93.1 3.1 67 38-104 154-238 (420)
13 TIGR03220 catechol_dmpE 2-oxop 98.1 2.3E-05 4.9E-10 59.7 8.4 81 20-104 56-141 (255)
14 COG3970 Fumarylacetoacetate (F 97.3 0.00029 6.2E-09 55.8 4.3 55 40-104 169-224 (379)
15 PRK11342 mhpD 2-keto-4-penteno 97.3 0.0016 3.4E-08 49.8 8.0 81 18-102 58-140 (262)
16 TIGR02312 HpaH 2-oxo-hepta-3-e 97.0 0.0075 1.6E-07 46.3 9.0 65 38-103 76-142 (267)
17 COG3971 2-keto-4-pentenoate hy 92.7 0.2 4.3E-06 38.9 4.2 72 21-96 62-135 (264)
18 COG3802 GguC Uncharacterized p 92.2 0.15 3.3E-06 39.8 3.1 58 38-103 139-199 (333)
19 TIGR03218 catechol_dmpH 4-oxal 88.8 4.1 8.9E-05 31.2 8.3 60 39-99 80-141 (263)
20 PF12596 Tnp_P_element_C: 87kD 62.2 1.5 3.3E-05 29.6 -1.1 14 84-97 74-87 (106)
21 PF08331 DUF1730: Domain of un 52.7 10 0.00022 23.6 1.6 19 9-27 5-23 (78)
22 PF11010 DUF2848: Protein of u 47.4 34 0.00074 25.5 3.9 51 26-79 12-66 (194)
23 cd02134 NusA_KH NusA_K homolog 44.4 7.9 0.00017 23.0 0.1 16 69-84 33-48 (61)
24 cd02414 jag_KH jag_K homology 39.1 16 0.00036 22.5 1.0 21 71-94 34-54 (77)
25 PRK01064 hypothetical protein; 33.0 24 0.00051 22.4 1.0 17 70-86 39-55 (78)
26 cd02409 KH-II KH-II (K homolo 22.9 34 0.00073 19.4 0.4 21 71-94 35-55 (68)
27 PF08383 Maf_N: Maf N-terminal 21.0 58 0.0013 17.7 1.0 18 77-94 17-34 (35)
28 COG0123 AcuC Deacetylases, inc 20.2 59 0.0013 26.0 1.4 33 66-102 110-142 (340)
No 1
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.6e-34 Score=220.02 Aligned_cols=100 Identities=39% Similarity=0.641 Sum_probs=94.3
Q ss_pred hhhhhcccCCCeEEEEccccHHHHHHhCCC--CCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCC
Q 033892 6 SAVQKLIQAGTKIVAVGRNYAAHAKELGNA--VPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDV 83 (109)
Q Consensus 6 ~~~~~~l~~~~ki~~vg~Ny~~h~~e~~~~--~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~i 83 (109)
+.+..++++++||+|+|+||++|++|++.. .|+.|++|+|++++++++++++.+|..+.++|||+||||||||+++++
T Consensus 50 ~~~~~~~~~~~ki~cvG~NY~~Ha~E~~~~~~~p~~P~~F~K~~~a~~~~~~~i~~P~~s~~~dyE~ELavvIGk~~~~v 129 (266)
T COG0179 50 VRLLAPLPPPGKIVCVGRNYADHAEEMGKDRDIPEEPVFFLKPPTAVIGPNDPIPLPPGSKGLDYEGELAVVIGKRGKDV 129 (266)
T ss_pred cccccCCCCCCcEEEEechHHHHHHHhccCCCCCCCCeeeccCcccccCCCCceECCCCCCCcceeEEEEEEECCcCCCC
Confidence 445667778899999999999999999875 799999999999999999999999999999999999999999999999
Q ss_pred ChhhHhhhhceeEEEeecccCC
Q 033892 84 PETTAMDYVGGFIFVKILLLLF 105 (109)
Q Consensus 84 s~~~A~~~I~Gyti~ND~s~~~ 105 (109)
++++|++||+|||++||||+|=
T Consensus 130 ~~e~A~d~I~GYti~nD~T~Rd 151 (266)
T COG0179 130 SVEDALDYIAGYTIGNDVTARD 151 (266)
T ss_pred CHHHHHhhheEEeeeeecchhc
Confidence 9999999999999999999984
No 2
>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=100.00 E-value=4.6e-34 Score=216.24 Aligned_cols=101 Identities=36% Similarity=0.548 Sum_probs=94.4
Q ss_pred ccchhhhhcccCCCeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCC
Q 033892 3 TASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARD 82 (109)
Q Consensus 3 ~~~~~~~~~l~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~ 82 (109)
.+++.+..+++ |+||+|+|.||++|++|++.+.|+.|++|+|+++++++++++|.+|..+..+|||+||++||||++++
T Consensus 31 ~~~v~ll~P~~-p~ki~~vg~Ny~~h~~e~~~~~p~~P~~F~Kp~~s~~g~~~~i~~P~~~~~ld~E~EL~vvigk~~~~ 109 (245)
T TIGR02303 31 PEQVTWLPPFE-PGTIFALGLNYADHASELGFSPPEEPLVFLKGNNTLTGHKGVTYRPKDVRFMHYECELAVVVGKTAKN 109 (245)
T ss_pred cccceEcCCCC-CCeEEEEeCCHHHHHHHhCCCCCCCCEEEEcCcceeeCCCCcEECCCCCCceeEEEEEEEEECCCCCC
Confidence 34566666664 68999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred CChhhHhhhhceeEEEeecccC
Q 033892 83 VPETTAMDYVGGFIFVKILLLL 104 (109)
Q Consensus 83 is~~~A~~~I~Gyti~ND~s~~ 104 (109)
+++++|++||+|||++||||+|
T Consensus 110 v~~~~A~~~I~Gytv~nD~T~R 131 (245)
T TIGR02303 110 VKREDAMDYVLGYTIANDYAIR 131 (245)
T ss_pred CCHHHHhhheeEEEEEeecchH
Confidence 9999999999999999999998
No 3
>KOG1535 consensus Predicted fumarylacetoacetate hydralase [General function prediction only]
Probab=99.98 E-value=1.4e-32 Score=202.32 Aligned_cols=102 Identities=53% Similarity=0.777 Sum_probs=98.7
Q ss_pred cchhhhhcccCCCeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCC
Q 033892 4 ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDV 83 (109)
Q Consensus 4 ~~~~~~~~l~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~i 83 (109)
+++++..++..++||+|+|+||.+|++|++.+.|++|+||.|+.+++++++++|.+|...+.+|||+||++||||.|+++
T Consensus 1 ~~~~~~~~~~~~~KIVcVg~NY~dh~~E~~~~~PkeP~~FlKptss~v~~g~~i~~p~~~~~lh~EvEL~vVigK~~~~v 80 (217)
T KOG1535|consen 1 ADVMLLRPLKWPTKIVCVGRNYADHCKELNNPVPKEPFFFLKPTSSIVGPGGPIVIPPGSKGLHHEVELAVVIGKKGSSV 80 (217)
T ss_pred CccchhhhhhcCCeEEEecccHHHHHHHhCCCCCCCCeEEeecchhhcCCCCceEcCCCcCccceeEEEEEEeccccccC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHhhhhceeEEEeecccCC
Q 033892 84 PETTAMDYVGGFIFVKILLLLF 105 (109)
Q Consensus 84 s~~~A~~~I~Gyti~ND~s~~~ 105 (109)
++.+|++||+||+++.|+|+|-
T Consensus 81 ~~~~amd~v~Gy~valDmtARd 102 (217)
T KOG1535|consen 81 KKKDAMDYVGGYAVALDMTARD 102 (217)
T ss_pred ChhhcccccccEEEEeeccchh
Confidence 9999999999999999999974
No 4
>PRK10691 hypothetical protein; Provisional
Probab=99.97 E-value=1.2e-30 Score=194.59 Aligned_cols=90 Identities=41% Similarity=0.663 Sum_probs=87.6
Q ss_pred CCeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChhhHhhhhce
Q 033892 15 GTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGG 94 (109)
Q Consensus 15 ~~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~~A~~~I~G 94 (109)
.+||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|....++|||+|||+||||+++++++++|++||+|
T Consensus 16 ~~ki~~vg~Ny~~h~~e~~~~~p~~P~~F~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvigk~~~~v~~~~a~~~V~g 95 (219)
T PRK10691 16 VSKVVCVGSNYAKHIKEMGSATPEEPVLFIKPETALCDLRQPLAIPKDFGSVHHEVELAVLIGATLRQATEEHVRKAIAG 95 (219)
T ss_pred CCcEEEEecCHHHHHHHhCCCCCCCCEEEECCcceeeCCCCcEECCCCCCCeeEEEEEEEEECCCCCCCCHHHHhhhheE
Confidence 49999999999999999999889999999999999999999999999988999999999999999999999999999999
Q ss_pred eEEEeecccC
Q 033892 95 FIFVKILLLL 104 (109)
Q Consensus 95 yti~ND~s~~ 104 (109)
|+++||+|+|
T Consensus 96 yt~~nDvt~r 105 (219)
T PRK10691 96 YGVALDLTLR 105 (219)
T ss_pred EEEEEEeEhh
Confidence 9999999986
No 5
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=99.96 E-value=1.1e-29 Score=204.95 Aligned_cols=97 Identities=37% Similarity=0.584 Sum_probs=92.4
Q ss_pred hhhcccCCCeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChhh
Q 033892 8 VQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETT 87 (109)
Q Consensus 8 ~~~~l~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~~ 87 (109)
+..++++++||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|+.++.+|||+|||+||||+++++++++
T Consensus 215 ~~~p~~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~F~K~~~s~~g~~~~i~~P~~~~~ld~E~ELavVigk~~~~v~~~e 294 (429)
T PRK15203 215 FPTPPHPHGTLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQARKVSEAD 294 (429)
T ss_pred cccCCCCCCeEEEEcCCHHHHHHHhCCCCCCCCEEEEcCcceeeCCCCCEECCCCCCceEEEEEEEEEECCCCCCCCHHH
Confidence 44566678999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhceeEEEeecccC
Q 033892 88 AMDYVGGFIFVKILLLL 104 (109)
Q Consensus 88 A~~~I~Gyti~ND~s~~ 104 (109)
|++||+||+++||+|+|
T Consensus 295 a~~~V~Gy~~~nD~t~r 311 (429)
T PRK15203 295 AMDYVAGYTVCNDYAIR 311 (429)
T ss_pred HhhheeEEEEEEeccch
Confidence 99999999999999997
No 6
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=99.96 E-value=8.6e-29 Score=199.86 Aligned_cols=88 Identities=26% Similarity=0.454 Sum_probs=82.6
Q ss_pred CeEEEEccccHHHHHHhC--------CCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChhh
Q 033892 16 TKIVAVGRNYAAHAKELG--------NAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETT 87 (109)
Q Consensus 16 ~ki~~vg~Ny~~h~~e~~--------~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~~ 87 (109)
+||+|+|+||++|.+|++ .+.|+.|++|+|+++++++++++|.+|.. .++|||+||++||||+|+++++++
T Consensus 3 ~ki~~vg~Ny~~~~~~~~~~~~~~~~~~~p~~P~~F~Kp~~al~g~~~~i~~P~~-~~~~~E~EL~vvIGk~~~~v~~~~ 81 (429)
T PRK15203 3 GTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIRCGEPIPFPQG-EKVLSGATVALIVGKTATKVREED 81 (429)
T ss_pred ceEEEEeCchHHHHHhhhhhccccccCCCCCCCEEEecCcceeeCCCCcEECCCC-CCceEEEEEEEEECCccCCCCHHH
Confidence 699999999999999865 24689999999999999999999999987 469999999999999999999999
Q ss_pred HhhhhceeEEEeecccC
Q 033892 88 AMDYVGGFIFVKILLLL 104 (109)
Q Consensus 88 A~~~I~Gyti~ND~s~~ 104 (109)
|++||+|||++||+|+|
T Consensus 82 A~~~V~Gyti~nD~t~r 98 (429)
T PRK15203 82 AAEYIAGYALANDVSLP 98 (429)
T ss_pred HhhheeEEEEEEEeech
Confidence 99999999999999987
No 7
>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=99.94 E-value=7.3e-27 Score=172.34 Aligned_cols=89 Identities=35% Similarity=0.586 Sum_probs=84.1
Q ss_pred CeEEEEccccHHHHHHhCC--------CCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChhh
Q 033892 16 TKIVAVGRNYAAHAKELGN--------AVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETT 87 (109)
Q Consensus 16 ~ki~~vg~Ny~~h~~e~~~--------~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~~ 87 (109)
+||+|+|.||++|++|++. +.|+.|.+|+|+++++.+++++|.+|.....++||+|||+||||+++++++++
T Consensus 1 ~~i~~vg~ny~~h~~~~~~~~~~~~~~~~p~~P~~f~k~~~~~~~~g~~i~~p~~~~~~~~E~ELa~vigr~~~~~~~~~ 80 (205)
T TIGR02305 1 GTVFGVALNYREQLDRLQEAFQQAPYKAPPKTPVLYIKPRNTHNGCGQPIPLPAGVEKLRSGATLALVVGRTACRVREEE 80 (205)
T ss_pred CcEEEEeCcHHHHHHHhcccccccccCCCCCCCEEEEcCcceEeCCCCeEECCCCCCCccEEEEEEEEECCCCCCCCHHH
Confidence 5899999999999999984 46899999999999999999999999987889999999999999999999999
Q ss_pred HhhhhceeEEEeecccC
Q 033892 88 AMDYVGGFIFVKILLLL 104 (109)
Q Consensus 88 A~~~I~Gyti~ND~s~~ 104 (109)
|++||+||+++||+|++
T Consensus 81 a~~~v~g~~~~~dit~~ 97 (205)
T TIGR02305 81 ALDYVAGYALVNDVSLP 97 (205)
T ss_pred HHHhhheeEEeeeeehh
Confidence 99999999999999864
No 8
>PRK12764 hypothetical protein; Provisional
Probab=99.93 E-value=3.4e-26 Score=187.71 Aligned_cols=97 Identities=36% Similarity=0.488 Sum_probs=90.8
Q ss_pred hhhhcccCCCeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChh
Q 033892 7 AVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPET 86 (109)
Q Consensus 7 ~~~~~l~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~ 86 (109)
+...+...++||+|+|+||++|++|++. .|+.|++|+|+++++.+++++|.+|.....+|||+||++||||++++++++
T Consensus 13 ~~~~~~~~p~kIi~vg~Ny~~ha~e~~~-~p~~P~~f~K~~~sl~~~g~~I~~p~~~~~l~~E~ELavVIgr~~~~v~~e 91 (500)
T PRK12764 13 VVAPLLARPGKVIAVHLNYPSRAAQRGR-TPAQPSYFLKPSSSLALSGGTVERPAGTELLAFEGEIALVIGRPARRVSPE 91 (500)
T ss_pred cccCCCCCCCcEEEECCCCHHHHHHhCC-CCCCCEEEEeccceEeCCCCeEECCCCCCceeEEEEEEEEECCcCCCCCHH
Confidence 4466667789999999999999999986 489999999999999999999999998889999999999999999999999
Q ss_pred hHhhhhceeEEEeecccC
Q 033892 87 TAMDYVGGFIFVKILLLL 104 (109)
Q Consensus 87 ~A~~~I~Gyti~ND~s~~ 104 (109)
+|++||+||+++||+|++
T Consensus 92 ea~~~I~Gyt~~nDvt~r 109 (500)
T PRK12764 92 DAWSHVAAVTAANDLGVY 109 (500)
T ss_pred HHHhhheEEEEecceeee
Confidence 999999999999999986
No 9
>PLN02856 fumarylacetoacetase
Probab=99.91 E-value=6.7e-25 Score=176.81 Aligned_cols=99 Identities=19% Similarity=0.260 Sum_probs=87.0
Q ss_pred cchhhhhcccCCCeEEEEccccHHHHHHhCCC--------CCC---CCEEEecCCCCcccCCCcEeecCC----------
Q 033892 4 ASSAVQKLIQAGTKIVAVGRNYAAHAKELGNA--------VPK---EPVLFLKPTSSYLGNGGTIEVPHP---------- 62 (109)
Q Consensus 4 ~~~~~~~~l~~~~ki~~vg~Ny~~h~~e~~~~--------~p~---~P~~f~K~~~~i~~~~~~i~~P~~---------- 62 (109)
+++.+..++ +++++.|. .||++|+.+++.. .|. .|++|.|+++++++++++|.+|..
T Consensus 117 ~~v~l~~P~-~~~~~~df-~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~y~gr~sSvv~sg~~I~rP~gq~~~~~~~~~ 194 (424)
T PLN02856 117 SDVEMLLPA-VIGDYTDF-FSSREHATNVGTMFRGPENALNPNWLHLPIGYHGRASSVVPSGTDIRRPRGQLHPNDGSSR 194 (424)
T ss_pred hhceEcCCC-ccceEEEE-ecHHHHHHHhhhhccCCccCCCcccccCCCEEcCCCceEEcCCCceeCCCCCccCCCCCCC
Confidence 345666666 67899898 9999999998642 133 499999999999999999999974
Q ss_pred -----CCCcccceeEEEEECCC---CCCCChhhHhhhhceeEEEeecccC
Q 033892 63 -----LDSLHHEVELAVVIGQK---ARDVPETTAMDYVGGFIFVKILLLL 104 (109)
Q Consensus 63 -----~~~ld~E~ELavVIGk~---~~~is~~~A~~~I~Gyti~ND~s~~ 104 (109)
++++|||+||++||||. |++|++++|++||+|||++||||+|
T Consensus 195 p~f~~s~~lDyE~ELavVIGk~~~~g~~I~~~~A~d~IfGytl~ND~SAR 244 (424)
T PLN02856 195 PYFGPSAKLDFELEMAAFVGPGNELGKPIPVNEAKDHIFGLVLMNDWSAR 244 (424)
T ss_pred CcccCcCceEEEEEEEEEECcCccccCCCCHHHHHhhheEEEEeeechhh
Confidence 77899999999999997 8999999999999999999999997
No 10
>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I.; InterPro: IPR002529 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the C-terminal domain of fumarylacetoacetase, as well as other domains that share a homologous sequence, including: 5-carboxymethyl-2-hydroxymuconate delta-isomerase (CHM isomerase; 5.3.3.10 from EC), which catalyses the conversion of 5-carboxymethyl-2-hydroxymuconate to 5-carboxy-2-oxohept-3-enedioate []. 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (OPET decarboxylase; 4.1.1.68 from EC), which catalyses the conversion of 5-oxopent-3-ene-1,2,5-tricarboxylate to 2-oxohept-3-enedioate and carbon dioxide. Bifunctional enzyme HpcE (OPET decarboxylase 4.1.1.68 from EC/HHDD isomerase 5.3.3.10 from EC), which is a duplication consisting of a tandem repeat of two FAH C-terminal-like domains. This enzyme is responsible for the degradation of 4-hydroxyphenylacetate, a product of tyrosine and phenylalanine metabolism also released by lignin catabolism []. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1SAW_B 3LZK_B 3S52_B 2WQT_Q 1SV6_C 2DFU_B 1WZO_D 3QDF_A 1GTT_B 1I7O_C ....
Probab=99.87 E-value=2.8e-22 Score=148.12 Aligned_cols=88 Identities=41% Similarity=0.656 Sum_probs=80.2
Q ss_pred eEEEEccccHHHHHHhCC---CCC-----CCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCC-Chhh
Q 033892 17 KIVAVGRNYAAHAKELGN---AVP-----KEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDV-PETT 87 (109)
Q Consensus 17 ki~~vg~Ny~~h~~e~~~---~~p-----~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~i-s~~~ 87 (109)
||+|+|.||.+|++|++. +.| ..|++|.|+++++.+++++|.+|..+..++||+||+++|||+++++ ++++
T Consensus 1 ~v~~~~~n~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~g~~i~~p~~~~~~~~E~Ela~vig~~~~~~~~~~e 80 (218)
T PF01557_consen 1 KVVGVGLNYTSHAEEAGAGDVDEPDYGVPVEPVFFMKPPSSLVGSGAPIPLPRGSRRLDYEAELAFVIGRPLRNVYTPEE 80 (218)
T ss_dssp EEEEEESEBHHHHHHTTTTCSSTTSEECECSGEEEEEEGGGEEETTSEEEECTTSSSEEEEEEEEEEESS-BSSTH-HHH
T ss_pred CEEEEeEchHHHHHHhCcCCCCCCccccccCCeEEecCCceeecCCCceecCccccccCcceEEEEEEecCCCCCCCHHH
Confidence 799999999999999873 334 3889999999999999999999999899999999999999999999 9999
Q ss_pred HhhhhceeEEEeecccC
Q 033892 88 AMDYVGGFIFVKILLLL 104 (109)
Q Consensus 88 A~~~I~Gyti~ND~s~~ 104 (109)
|++||+||+++||||.|
T Consensus 81 a~~~i~g~~~~~d~~~r 97 (218)
T PF01557_consen 81 ALDAIAGYTPANDVTAR 97 (218)
T ss_dssp HGGGEEEEEEEEEEEEH
T ss_pred HHHHhhEEeeecccchh
Confidence 99999999999999975
No 11
>TIGR01266 fum_ac_acetase fumarylacetoacetase. This enzyme catalyzes the final step in the breakdown of tyrosine or phenylalanine to fumarate and acetoacetate.
Probab=99.86 E-value=4.7e-22 Score=160.07 Aligned_cols=90 Identities=20% Similarity=0.239 Sum_probs=80.3
Q ss_pred CCeE--EEEccccHHHHHHhCCC-------C----CCCCEEEecCCCCcccCCCcEeecCC--------------CCCcc
Q 033892 15 GTKI--VAVGRNYAAHAKELGNA-------V----PKEPVLFLKPTSSYLGNGGTIEVPHP--------------LDSLH 67 (109)
Q Consensus 15 ~~ki--~~vg~Ny~~h~~e~~~~-------~----p~~P~~f~K~~~~i~~~~~~i~~P~~--------------~~~ld 67 (109)
|.+| +....+|.+|+.+.+.- . .+.|++|.|++++++++|++|.+|.. ++.+|
T Consensus 117 P~~i~dytDf~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~y~g~~sSvv~sg~~I~rP~gq~~~~~~~~p~f~ps~~lD 196 (415)
T TIGR01266 117 PAQIGDYTDFYSSIQHATNVGIMFRGKENALLPNWKHLPVGYHGRASSIVVSGTPLRRPMGQTLPDNAKPPVFGPCKLLD 196 (415)
T ss_pred CccchhhhhhhchHHHHHHHHhhccCCCCCCCcccccCCcEeccCCceEEcCCCceeCCCccccCCcccCCcccccCceE
Confidence 4455 77899999999998521 1 26899999999999999999999975 78899
Q ss_pred cceeEEEEECCC---CCCCChhhHhhhhceeEEEeecccC
Q 033892 68 HEVELAVVIGQK---ARDVPETTAMDYVGGFIFVKILLLL 104 (109)
Q Consensus 68 ~E~ELavVIGk~---~~~is~~~A~~~I~Gyti~ND~s~~ 104 (109)
||+||++||||. |++|++++|++||+||+++||||+|
T Consensus 197 ~E~ELavvIGk~~~~g~~vs~e~A~~~IfGy~l~ND~SAR 236 (415)
T TIGR01266 197 MELEMAFFVGPGNRLGEPIPISKAEEHIFGVVLMNDWSAR 236 (415)
T ss_pred EEEEEEEEECcCcccCCcCCHHHHHhhheEEEEeeEcchh
Confidence 999999999998 8999999999999999999999997
No 12
>KOG2843 consensus Fumarylacetoacetase [Carbohydrate transport and metabolism]
Probab=99.10 E-value=4.5e-11 Score=93.14 Aligned_cols=67 Identities=24% Similarity=0.322 Sum_probs=60.8
Q ss_pred CCCEEEecCCCCcccCCCcEeecC--------------CCCCcccceeEEEEECCC----CCCCChhhHhhhhceeEEEe
Q 033892 38 KEPVLFLKPTSSYLGNGGTIEVPH--------------PLDSLHHEVELAVVIGQK----ARDVPETTAMDYVGGFIFVK 99 (109)
Q Consensus 38 ~~P~~f~K~~~~i~~~~~~i~~P~--------------~~~~ld~E~ELavVIGk~----~~~is~~~A~~~I~Gyti~N 99 (109)
.-|+-|....++++-+|.||.+|- .++.+|+|.|+|+.||-+ +..|+.++|+++|+|+++.|
T Consensus 154 hLPVGYHGRASSvVVSGTpirRP~GQtkpddae~PvfGacKLlDfELEMAFFvGgpgN~LGepipi~kA~~~iFG~vLMN 233 (420)
T KOG2843|consen 154 HLPVGYHGRASSVVVSGTPIRRPLGQTKPDDAEKPVFGACKLLDFELEMAFFVGGPGNQLGEPIPIDKAWKNIFGFVLMN 233 (420)
T ss_pred cccccccCceeeEEEcCCcccCcccCCCCCCCCCCcccchhhccceeeeeeEecCCccccCCccchhhhhhheeeEEEec
Confidence 579999999999999999999984 257899999999999955 56799999999999999999
Q ss_pred ecccC
Q 033892 100 ILLLL 104 (109)
Q Consensus 100 D~s~~ 104 (109)
|||+|
T Consensus 234 DWSAR 238 (420)
T KOG2843|consen 234 DWSAR 238 (420)
T ss_pred ccchh
Confidence 99997
No 13
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
Probab=98.09 E-value=2.3e-05 Score=59.74 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=56.8
Q ss_pred EEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCC--CCCChhhHh---hhhce
Q 033892 20 AVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA--RDVPETTAM---DYVGG 94 (109)
Q Consensus 20 ~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~--~~is~~~A~---~~I~G 94 (109)
-+|..-..-.+.++. ..|++=.-..+.+..++.++.++... +.++|+||+++|||++ ++++.+|++ ++|++
T Consensus 56 K~g~ts~~~~~~~gv---~~P~~g~l~~~~~~~~g~~i~~~~~~-~~~vE~Elafvlg~~l~~~~~t~~ev~~ai~~v~~ 131 (255)
T TIGR03220 56 KIGVTSKAVMNMLGV---YQPDFGYLLDGMVYNEGEPIPTDTLI-QPKAEGEIAFVLKKDLMGPGVTAADVLAATECVMP 131 (255)
T ss_pred EEecCCHHHHHHhCC---CCCcEEEeeccccccCCCeeccccCc-cceeeeEEEEEECCCCCCCCCCHHHHHHHHhheee
Confidence 344443444344444 36765555556667788888888753 7999999999999996 689999766 56666
Q ss_pred eEEEeecccC
Q 033892 95 FIFVKILLLL 104 (109)
Q Consensus 95 yti~ND~s~~ 104 (109)
+.-.||.+.+
T Consensus 132 ~~El~D~r~~ 141 (255)
T TIGR03220 132 CFEIVDSRIR 141 (255)
T ss_pred eEEEcccccc
Confidence 6777788765
No 14
>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]
Probab=97.33 E-value=0.00029 Score=55.78 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=47.3
Q ss_pred CEEEec-CCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChhhHhhhhceeEEEeecccC
Q 033892 40 PVLFLK-PTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGFIFVKILLLL 104 (109)
Q Consensus 40 P~~f~K-~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~~A~~~I~Gyti~ND~s~~ 104 (109)
+-+|.| ++.+-+|+|+.|-+...++....|-|+++++...++ |.|||++||+++|
T Consensus 169 aEIFtKaqpmssVG~Ga~Igv~~~S~WnnPEPEvvl~~dS~G~----------I~GaTlgnDVnlR 224 (379)
T COG3970 169 AEIFTKAQPMSSVGHGAQIGVRPDSEWNNPEPEVVLAVDSSGK----------IVGATLGNDVNLR 224 (379)
T ss_pred hhheecCCccccccccceeeeccccccCCCCCeEEEEEcCCCc----------EEeeeecCccccc
Confidence 445554 577889999999887777778999999999999988 9999999999987
No 15
>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional
Probab=97.30 E-value=0.0016 Score=49.85 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=62.1
Q ss_pred EEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCC--CCChhhHhhhhcee
Q 033892 18 IVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKAR--DVPETTAMDYVGGF 95 (109)
Q Consensus 18 i~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~--~is~~~A~~~I~Gy 95 (109)
=|.+|.+..+..+.++...|-...+|. +.+..++..+.++.. .....|+||++++||+.. +++.+|+.++|.++
T Consensus 58 G~K~G~ts~~~~~~~gv~~P~~g~l~~---~~~~~~g~~~~~~~~-~~~~iE~Eiaf~l~~dl~~~~~t~~ev~~ai~~v 133 (262)
T PRK11342 58 GRKVGLTHPKVQQQLGVDQPDFGTLFA---DMCYGDNEIIPFSRV-LQPRIEAEIALVLNRDLPATDITFDELYNAIEWV 133 (262)
T ss_pred EEEecCCCHHHHHHhCCCCCCcccccc---hhhcCCCCeeccccc-CCcceeeEEEEEECCCCCCCCCCHHHHHHhhceE
Confidence 378888888888888876555555555 456667777766554 357889999999999864 78999999999999
Q ss_pred EEEeecc
Q 033892 96 IFVKILL 102 (109)
Q Consensus 96 ti~ND~s 102 (109)
..+-.+-
T Consensus 134 ~paiEiv 140 (262)
T PRK11342 134 LPALEVV 140 (262)
T ss_pred eeeEEec
Confidence 8775554
No 16
>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.
Probab=96.98 E-value=0.0075 Score=46.33 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=51.1
Q ss_pred CCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCC--CCCChhhHhhhhceeEEEeeccc
Q 033892 38 KEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA--RDVPETTAMDYVGGFIFVKILLL 103 (109)
Q Consensus 38 ~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~--~~is~~~A~~~I~Gyti~ND~s~ 103 (109)
..|++=.-..+.+...+..+... ...+.-.|+||++++|++. .+.+.+|++++|.++..+-++..
T Consensus 76 ~~P~~g~l~~~~~~~~g~~~~~~-~~~~p~vE~Eiaf~l~~~l~~~~~t~~ev~~ai~~v~paiEi~d 142 (267)
T TIGR02312 76 DEPDYGVLLDDMFFEDGSTIPAD-RFIQPRVEVELAFVLKKDLEGPNVTIFDVLNATDYVVPALEIID 142 (267)
T ss_pred CCCeeEEecCccccCCCCeeccc-cccccccceEEEEEECCCCCCCCCCHHHHHHHhheEEeeEEEee
Confidence 36776566666777777777664 2345789999999999987 47899999999999998888764
No 17
>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.69 E-value=0.2 Score=38.87 Aligned_cols=72 Identities=22% Similarity=0.308 Sum_probs=49.6
Q ss_pred EccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCC--CCCChhhHhhhhceeE
Q 033892 21 VGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA--RDVPETTAMDYVGGFI 96 (109)
Q Consensus 21 vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~--~~is~~~A~~~I~Gyt 96 (109)
+|+.-+.+-+.++..-|..=.+| .......+.+|+++.... ..+|+||+++++|+. .++|..|+++||.-+.
T Consensus 62 vglts~a~q~~~~v~epd~G~lf---d~m~f~eg~~ip~~r~~~-prvE~EiafvL~kdlpa~~~T~~d~l~a~~~v~ 135 (264)
T COG3971 62 VGLTSPAMQQQLGVDEPDYGTLF---DDMAFNEGADIPFSRFIQ-PRVEVEIAFVLKKDLPAPDCTVADVLNATDYVL 135 (264)
T ss_pred eccCCHHHHHHcCCCCcchhhhh---HhHHhhcCCCCCcccccc-eeeeeeEEEEecCCCCCCCCCHHHHHHHHHhhh
Confidence 56666666666665433332333 334556677777776543 499999999999995 4899999999986444
No 18
>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.16 E-value=0.15 Score=39.81 Aligned_cols=58 Identities=22% Similarity=0.309 Sum_probs=46.9
Q ss_pred CCCEEEecC-CCCcccCCCcEeecCCCCCcccceeEE--EEECCCCCCCChhhHhhhhceeEEEeeccc
Q 033892 38 KEPVLFLKP-TSSYLGNGGTIEVPHPLDSLHHEVELA--VVIGQKARDVPETTAMDYVGGFIFVKILLL 103 (109)
Q Consensus 38 ~~P~~f~K~-~~~i~~~~~~i~~P~~~~~ld~E~ELa--vVIGk~~~~is~~~A~~~I~Gyti~ND~s~ 103 (109)
-+|-+|.|- .+.++.+|.+++.|.....---|.||+ -+||.++.. |=.||+++|.+|.
T Consensus 139 vQPEWFyKG~G~~~vapGa~l~sPaFAedggEEpEiaGiYlig~dg~p--------~RlGfal~NEfSD 199 (333)
T COG3802 139 VQPEWFYKGDGTVAVAPGAPLPSPAFAEDGGEEPEIAGIYLIGDDGTP--------YRLGFALANEFSD 199 (333)
T ss_pred cCcceEEeCCCcEEecCCCCCCChhhhhccCCCceeeEEEEECCCCce--------eEEeeeecchhhh
Confidence 489887776 466788899999998877777788886 678988764 4789999999986
No 19
>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase. Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc.
Probab=88.82 E-value=4.1 Score=31.18 Aligned_cols=60 Identities=15% Similarity=0.057 Sum_probs=42.0
Q ss_pred CCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCC--CCCChhhHhhhhceeEEEe
Q 033892 39 EPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA--RDVPETTAMDYVGGFIFVK 99 (109)
Q Consensus 39 ~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~--~~is~~~A~~~I~Gyti~N 99 (109)
.|++=.-..+.+..++..+..... .+.-.|.|+++++|++. .+.+.++++++|..+..+-
T Consensus 80 ~P~~g~l~~~~~~~~g~~~~~~~~-~~p~vE~Eiaf~l~~~l~~~~~t~~ev~~ai~~v~pai 141 (263)
T TIGR03218 80 TPVFGFLVDYFSVPDGGEIKTSEL-IHPKVEAEIAFVTKAPLKGPGCHIGDVLAATDFVMPAV 141 (263)
T ss_pred CCeeeeecccccccCCCeeccccc-CcceeeeEEEEEECCCCCCCCCCHHHHHHhhcEEEeeE
Confidence 566544444455555666554433 34689999999999975 5788999999988776554
No 20
>PF12596 Tnp_P_element_C: 87kDa Transposase; InterPro: IPR022242 This domain family is found in eukaryotes, and is typically between 78 and 110 amino acids in length. The family is found in association with PF05485 from PFAM. There are two completely conserved residues (D and G) that may be functionally important. This family is an 87kDa transposase protein which catalyses both the precise and imprecise excision of a nonautonomous P transposable element.
Probab=62.17 E-value=1.5 Score=29.63 Aligned_cols=14 Identities=21% Similarity=0.733 Sum_probs=12.2
Q ss_pred ChhhHhhhhceeEE
Q 033892 84 PETTAMDYVGGFIF 97 (109)
Q Consensus 84 s~~~A~~~I~Gyti 97 (109)
-.++|++||+||++
T Consensus 74 ~e~d~l~YiaGyVa 87 (106)
T PF12596_consen 74 IEEDGLEYIAGYVA 87 (106)
T ss_pred hHHHHHHHHHHHHH
Confidence 57899999999974
No 21
>PF08331 DUF1730: Domain of unknown function (DUF1730); InterPro: IPR013542 This domain of unknown function occurs in iron-sulphur cluster-binding proteins together with the 4Fe-4S binding domain (IPR001450 from INTERPRO).
Probab=52.65 E-value=10 Score=23.58 Aligned_cols=19 Identities=16% Similarity=0.398 Sum_probs=16.9
Q ss_pred hhcccCCCeEEEEccccHH
Q 033892 9 QKLIQAGTKIVAVGRNYAA 27 (109)
Q Consensus 9 ~~~l~~~~ki~~vg~Ny~~ 27 (109)
..++|.+.+|+++|.||..
T Consensus 5 ~~~~p~arSvIv~a~~Y~~ 23 (78)
T PF08331_consen 5 RKLLPGARSVIVLAFPYYP 23 (78)
T ss_pred HHhCCCCcEEEEEEccCCC
Confidence 5678899999999999987
No 22
>PF11010 DUF2848: Protein of unknown function (DUF2848); InterPro: IPR021269 This bacterial family of proteins has no known function.
Probab=47.35 E-value=34 Score=25.50 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=32.7
Q ss_pred HHHHHHh---CCCCC-CCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCC
Q 033892 26 AAHAKEL---GNAVP-KEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQK 79 (109)
Q Consensus 26 ~~h~~e~---~~~~p-~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~ 79 (109)
..|++|+ |.++| +.|.||.-.++-+... ..|..... .---|+|-+++..+.
T Consensus 12 ~~HI~EL~~lGVp~Ps~vP~~Y~v~~~lltq~-~~i~v~g~--~tSGE~E~vli~~~g 66 (194)
T PF11010_consen 12 EHHIEELAALGVPPPSSVPLFYRVAPYLLTQA-DEIEVLGE--DTSGEAEPVLIRHGG 66 (194)
T ss_pred HHHHHHHHHhCCCCCCCCCEEEEechhhCccc-CeEEeccC--CCCceEEEEEEEECC
Confidence 4577765 55544 7999999888776644 44544432 345678877776544
No 23
>cd02134 NusA_KH NusA_K homology RNA-binding domain (KH). NusA is an essential multifunctional transcription elongation factor that is universally conserved among prokaryotes and archaea. NusA anti-termination function plays an important role in the expression of ribosomal rrn operons. During transcription of many other genes, NusA-induced RNAP pausing provides a mechanism for synchronizing transcription and translation . The N-terminal RNAP-binding domain (NTD) is connected through a flexible hinge helix to three globular domains, S1, KH1 and KH2. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices.
Probab=44.40 E-value=7.9 Score=22.99 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=13.8
Q ss_pred ceeEEEEECCCCCCCC
Q 033892 69 EVELAVVIGQKARDVP 84 (109)
Q Consensus 69 E~ELavVIGk~~~~is 84 (109)
+.+++.+|||.|+++.
T Consensus 33 ~~~~~~aIGk~G~nI~ 48 (61)
T cd02134 33 DDQLGLAIGKGGQNVR 48 (61)
T ss_pred cccceeeECCCCHHHH
Confidence 3689999999999884
No 24
>cd02414 jag_KH jag_K homology RNA-binding domain. The KH domain is found in proteins homologous to the Bacillus subtilis protein Jag, which is associated with SpoIIIJ and is necessary for the third stage of sporulation. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=39.10 E-value=16 Score=22.48 Aligned_cols=21 Identities=19% Similarity=0.730 Sum_probs=15.6
Q ss_pred eEEEEECCCCCCCChhhHhhhhce
Q 033892 71 ELAVVIGQKARDVPETTAMDYVGG 94 (109)
Q Consensus 71 ELavVIGk~~~~is~~~A~~~I~G 94 (109)
.++.+|||.|+.+ +|++|+.-
T Consensus 34 ~~g~LIGk~G~tL---~AlQ~L~~ 54 (77)
T cd02414 34 DIGLLIGKRGKTL---DALQYLAN 54 (77)
T ss_pred CCCeEECCCCccH---HHHHHHHH
Confidence 4689999999977 56666543
No 25
>PRK01064 hypothetical protein; Provisional
Probab=33.04 E-value=24 Score=22.41 Aligned_cols=17 Identities=18% Similarity=0.511 Sum_probs=13.4
Q ss_pred eeEEEEECCCCCCCChh
Q 033892 70 VELAVVIGQKARDVPET 86 (109)
Q Consensus 70 ~ELavVIGk~~~~is~~ 86 (109)
..++.+|||.|+++..-
T Consensus 39 ~D~g~vIGk~G~~i~ai 55 (78)
T PRK01064 39 PDIGKIIGKEGRTIKAI 55 (78)
T ss_pred ccceEEECCCCccHHHH
Confidence 35699999999988543
No 26
>cd02409 KH-II KH-II (K homology RNA-binding domain, type II). KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins (e.g. ribosomal protein S3), transcription factors (e.g. NusA_K), and post-transcriptional modifiers of mRNA (e.g. hnRNP K). There are two different KH domains that belong to different protein folds, but they share a single KH motif. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In addition to their KH core domain, KH-II proteins have an N-terminal alpha helical extension while KH-I proteins have a C-terminal alpha helical extension.
Probab=22.94 E-value=34 Score=19.40 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=15.2
Q ss_pred eEEEEECCCCCCCChhhHhhhhce
Q 033892 71 ELAVVIGQKARDVPETTAMDYVGG 94 (109)
Q Consensus 71 ELavVIGk~~~~is~~~A~~~I~G 94 (109)
+.+.+|||.|+++ ++..+..+
T Consensus 35 ~~g~lIGk~G~~l---~~l~~l~~ 55 (68)
T cd02409 35 QPGLVIGKKGQNI---RALQKLLQ 55 (68)
T ss_pred CCceEECCCCccH---HHHHHHHH
Confidence 5899999999987 44444444
No 27
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=21.00 E-value=58 Score=17.73 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=12.8
Q ss_pred CCCCCCCChhhHhhhhce
Q 033892 77 GQKARDVPETTAMDYVGG 94 (109)
Q Consensus 77 Gk~~~~is~~~A~~~I~G 94 (109)
+-.+-+++++||.+...|
T Consensus 17 ~pe~l~LtpEDAvEaLi~ 34 (35)
T PF08383_consen 17 NPEALGLTPEDAVEALIG 34 (35)
T ss_pred ChhhcCCCHHHHHHHHhc
Confidence 444678899999887543
No 28
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.24 E-value=59 Score=25.98 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=22.1
Q ss_pred cccceeEEEEECCCCCCCChhhHhhhhceeEEEeecc
Q 033892 66 LHHEVELAVVIGQKARDVPETTAMDYVGGFIFVKILL 102 (109)
Q Consensus 66 ld~E~ELavVIGk~~~~is~~~A~~~I~Gyti~ND~s 102 (109)
+..|...++.+.-++.+.-++.|. |||++||+-
T Consensus 110 ~~g~~~~~~~~rppgHHA~~~~a~----GFC~fNn~A 142 (340)
T COG0123 110 LEGEDNAFALVRPPGHHAGRDRAS----GFCLFNNVA 142 (340)
T ss_pred HcCccceEEECCCCcccccCCCCc----eeeeecHHH
Confidence 344434555555557777766665 999999974
Done!