Query 033892
Match_columns 109
No_of_seqs 112 out of 1045
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 12:24:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033892.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033892hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nr9a_ d.177.1.1 (A:) Putativ 100.0 4.6E-35 3.3E-39 216.0 6.7 92 13-104 15-106 (221)
2 d1sawa_ d.177.1.1 (A:) FAHD1 ( 100.0 1.2E-34 8.9E-39 213.1 6.0 90 15-104 10-99 (217)
3 d1gtta2 d.177.1.1 (A:214-429) 100.0 1.9E-34 1.4E-38 211.5 6.1 96 10-105 3-99 (216)
4 d1gtta1 d.177.1.1 (A:1-213) 4- 100.0 1.7E-32 1.3E-36 201.2 9.6 89 15-104 2-98 (213)
5 d1nkqa_ d.177.1.1 (A:) Hypothe 100.0 7.7E-32 5.6E-36 202.5 4.9 94 10-104 3-124 (257)
6 d1hyoa2 d.177.1.1 (A:119-416) 99.9 9.7E-25 7E-29 166.6 7.2 85 20-104 7-119 (298)
7 d1sv6a_ d.177.1.1 (A:) 2-keto- 97.0 0.0011 8.3E-08 46.6 7.0 66 38-104 75-142 (261)
8 d2gdta1 d.346.1.1 (A:2-116) Ns 17.8 38 0.0028 19.9 2.3 16 38-53 53-68 (115)
9 d1tska_ g.3.7.2 (A:) Toxin ts 13.3 38 0.0027 16.0 1.1 10 74-83 1-10 (35)
10 d2o35a1 a.293.1.1 (A:2-80) Hyp 11.6 34 0.0024 19.6 0.7 17 79-95 56-72 (79)
No 1
>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=4.6e-35 Score=215.98 Aligned_cols=92 Identities=41% Similarity=0.653 Sum_probs=79.1
Q ss_pred cCCCeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChhhHhhhh
Q 033892 13 QAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYV 92 (109)
Q Consensus 13 ~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~~A~~~I 92 (109)
.|.+||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|..+..+|||+||++||||+++++++++|++||
T Consensus 15 ~Pv~kI~cvg~NY~~H~~E~~~~~p~~P~~F~K~~~al~g~~~~I~~p~~~~~ld~E~EL~vvigk~~~~i~~~~A~~~I 94 (221)
T d1nr9a_ 15 YPVSKVVCVGSNYAKHIKEMGSAVPEEPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHVRKAI 94 (221)
T ss_dssp CCCCCEEEESCCBC----------CCCCCEEEECGGGEEETTSCBCCCSSSSCEEECEEEEEEECSCBSSCCHHHHHHHE
T ss_pred CCCccEEEEeccHHHHHHHHCCCCCCCCEEEEECchhhcCCCcccccccccceeeecccEEEEeccccceeeccccchhh
Confidence 34499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEeecccC
Q 033892 93 GGFIFVKILLLL 104 (109)
Q Consensus 93 ~Gyti~ND~s~~ 104 (109)
+|||++||||+|
T Consensus 95 ~Gyti~ND~T~R 106 (221)
T d1nr9a_ 95 AGYGVALDLTLR 106 (221)
T ss_dssp EEEEEEECCBCH
T ss_pred heeeeeeeeeee
Confidence 999999999986
No 2
>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1.2e-34 Score=213.09 Aligned_cols=90 Identities=50% Similarity=0.853 Sum_probs=77.5
Q ss_pred CCeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChhhHhhhhce
Q 033892 15 GTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGG 94 (109)
Q Consensus 15 ~~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~~A~~~I~G 94 (109)
|+||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|..+..+|||+|||+||||++++|++++|++||+|
T Consensus 10 p~~I~cvg~NY~~H~~E~~~~~p~~P~~F~K~~~s~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~G 89 (217)
T d1sawa_ 10 GKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGG 89 (217)
T ss_dssp CCEEEEESCCBC-----------CCCCEEEEEGGGEEETTSCEECCTTCSCEEECEEEEEEESSCBCSCCTTTGGGSEEE
T ss_pred CCcEEEEeccHHHHHHHHCCCCCCCCeEEecChhhccCCCCceeCCcccceeeeecceEEEeeeeeceeehhhHhhcccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecccC
Q 033892 95 FIFVKILLLL 104 (109)
Q Consensus 95 yti~ND~s~~ 104 (109)
||++||||+|
T Consensus 90 yti~nDvt~R 99 (217)
T d1sawa_ 90 YALCLDMTAR 99 (217)
T ss_dssp EEEEECCEEH
T ss_pred ceeeeeechh
Confidence 9999999986
No 3
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.9e-34 Score=211.52 Aligned_cols=96 Identities=38% Similarity=0.591 Sum_probs=84.1
Q ss_pred hcccCC-CeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChhhH
Q 033892 10 KLIQAG-TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTA 88 (109)
Q Consensus 10 ~~l~~~-~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~~A 88 (109)
+++|.| +||+|+|+||++|++|++.+.|+.|++|+|+++++++++++|.+|..+..+|||+||++||||.+++++.++|
T Consensus 3 p~~p~p~~~I~cvg~Ny~~H~~E~~~~~p~~P~~F~Kp~ssl~g~~~~i~~P~~~~~ld~E~EL~vvigk~~~~i~~~~a 82 (216)
T d1gtta2 3 PTLPHPHGTLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQARNVSEADA 82 (216)
T ss_dssp CCCSSSCSCEEEESSCBCCC--------CCSCCEEEECGGGEECTTEEEEECTTCSCEECCEEEEEEECSCBSSCCTTTG
T ss_pred CCCCCCCCCEEEEEccHHHHHHHhCCCCCCCCEEEEEecccccCCCcccccccccceEEeeceEEEEEeccceeecHHHh
Confidence 567766 7999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhceeEEEeecccCC
Q 033892 89 MDYVGGFIFVKILLLLF 105 (109)
Q Consensus 89 ~~~I~Gyti~ND~s~~~ 105 (109)
++||+||+++||||+|-
T Consensus 83 ~~~I~Gy~i~nD~t~rd 99 (216)
T d1gtta2 83 MDYVAGYTVCNDYAIRD 99 (216)
T ss_dssp GGGEEEEEEEECCEEGG
T ss_pred hhheeeeeccccccchh
Confidence 99999999999999874
No 4
>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}
Probab=99.97 E-value=1.7e-32 Score=201.19 Aligned_cols=89 Identities=27% Similarity=0.474 Sum_probs=83.4
Q ss_pred CCeEEEEccccHHHHHHhCCC--------CCCCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCCCCCChh
Q 033892 15 GTKIVAVGRNYAAHAKELGNA--------VPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPET 86 (109)
Q Consensus 15 ~~ki~~vg~Ny~~h~~e~~~~--------~p~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~~~is~~ 86 (109)
.+||||+|+||++|++|++.. +|+.|++|+|+++++++++++|.+|.. ..+|||+|||+||||.+++|+++
T Consensus 2 ~gki~~vglNY~~h~~e~~~~~~~~p~~~~p~~P~~F~K~~~s~~g~g~~I~~P~~-~~~~~E~ELavVIgk~~~~i~~~ 80 (213)
T d1gtta1 2 KGTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIGCGEPIPFPQG-EKVLSGATVALIVGKTATKVREE 80 (213)
T ss_dssp CSCEEEEESCBHHHHHHHTTGGGSTTTCSCCSSCEEEEECGGGEECTTCCEEECTT-CCEECCEEEEEEECSCBSSCCGG
T ss_pred CceEEEEeCChHHHHHHHhhhhhcCcccCCCCCCEEEEcchHHeeCCCCcEEEecc-ceeeeeeeEEEEeecccccchhh
Confidence 379999999999999999852 479999999999999999999999974 57999999999999999999999
Q ss_pred hHhhhhceeEEEeecccC
Q 033892 87 TAMDYVGGFIFVKILLLL 104 (109)
Q Consensus 87 ~A~~~I~Gyti~ND~s~~ 104 (109)
+|++||+||+++||||+|
T Consensus 81 ~A~~~I~Gyti~nD~T~r 98 (213)
T d1gtta1 81 DAAEYIAGYALANDVSLP 98 (213)
T ss_dssp GGGGGEEEEEEEECCBSC
T ss_pred hhHHHHHHHHhhhccchH
Confidence 999999999999999986
No 5
>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.97 E-value=7.7e-32 Score=202.47 Aligned_cols=94 Identities=38% Similarity=0.620 Sum_probs=80.6
Q ss_pred hcccCCCeEEEEccccHHHHHHhCCCCCCCCEEEecCCCCcccCCCc-------------------------EeecCCCC
Q 033892 10 KLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGT-------------------------IEVPHPLD 64 (109)
Q Consensus 10 ~~l~~~~ki~~vg~Ny~~h~~e~~~~~p~~P~~f~K~~~~i~~~~~~-------------------------i~~P~~~~ 64 (109)
.++.+++||+|+|+||++|++|++.+.|+.|++|+|++++++++++. +..|. +.
T Consensus 3 ~~~~~~rkI~cvG~NY~~Ha~E~g~~~p~~P~~F~Kp~ssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~p~-~~ 81 (257)
T d1nkqa_ 3 NYLKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPR-GV 81 (257)
T ss_dssp GGGGGCCCEEEECSCBCSSGGGGGC----CCCEEEECGGGEEBCTTCC------CCSCSCCCCCTTSCCBCCEEECT-TC
T ss_pred cccCCCCcEEEEeccHHHHHHHHCCCCCCCCEEEEechhheecCCcccccccccccccccccccccccCCCceeCCC-cc
Confidence 45789999999999999999999999999999999999999987653 44444 46
Q ss_pred CcccceeEEEEECCCCCCCC---hhhHhhhhceeEEEeecccC
Q 033892 65 SLHHEVELAVVIGQKARDVP---ETTAMDYVGGFIFVKILLLL 104 (109)
Q Consensus 65 ~ld~E~ELavVIGk~~~~is---~~~A~~~I~Gyti~ND~s~~ 104 (109)
++|||+|||+||||+|++++ +++|++||+||+++||||+|
T Consensus 82 ~ld~E~EL~vVIgk~~~~i~~~~~e~A~~~V~Gy~i~nD~s~R 124 (257)
T d1nkqa_ 82 KVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTAR 124 (257)
T ss_dssp CEEECEEEEEEECSCBCSCCCCCGGGTGGGEEEEEEEECCEEH
T ss_pred cceeeEEEEEEEeeccccccchhHHHHHHHHhhhhhccccccc
Confidence 79999999999999999987 59999999999999999986
No 6
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.90 E-value=9.7e-25 Score=166.55 Aligned_cols=85 Identities=24% Similarity=0.289 Sum_probs=71.4
Q ss_pred EEccccHHHHHHhC-------CCCC----CCCEEEecCCCCcccCCCcEeecC--------------CCCCcccceeEEE
Q 033892 20 AVGRNYAAHAKELG-------NAVP----KEPVLFLKPTSSYLGNGGTIEVPH--------------PLDSLHHEVELAV 74 (109)
Q Consensus 20 ~vg~Ny~~h~~e~~-------~~~p----~~P~~f~K~~~~i~~~~~~i~~P~--------------~~~~ld~E~ELav 74 (109)
+....|++|+++.+ .+.| +.|++|.|+++++++++++|.+|. .++.+|||+||++
T Consensus 7 ~Df~~~~~Ha~~~~~~~r~~~~~lpp~~~~~Pv~f~~~~ssivg~g~~I~~P~g~~~~~~~~~p~~~~s~~lDyE~EL~v 86 (298)
T d1hyoa2 7 TDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMAF 86 (298)
T ss_dssp EEECCCHHHHHHHHHHHHCGGGCSCTTTTTSCCEEECCSTTEEETTCCEECCEEEECSCTTSCCEEEECSCEECBEEEEE
T ss_pred ceeccHHHHHHHHHHhhcCCCCCCCcccccCCCEEcCCCCeEECCCCCEeCCCcceecCccCCCccCcccceeeeceEEE
Confidence 34445666766543 1223 569999999999999999999994 4788999999999
Q ss_pred EECCC---CCCCChhhHhhhhceeEEEeecccC
Q 033892 75 VIGQK---ARDVPETTAMDYVGGFIFVKILLLL 104 (109)
Q Consensus 75 VIGk~---~~~is~~~A~~~I~Gyti~ND~s~~ 104 (109)
||||. ||+|++++|++||+|||++||||+|
T Consensus 87 VIG~~~~~g~~i~~e~A~d~I~Gyti~NDvSaR 119 (298)
T d1hyoa2 87 FVGPGNRFGEPIPISKAHEHIFGMVLMNDWSAR 119 (298)
T ss_dssp EECSCCCTTCCCCHHHHGGGEEEEEEEECCEEH
T ss_pred EEecccccCccCCHHHHHHHHHHHhhhhhhhHH
Confidence 99975 8999999999999999999999986
No 7
>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD {Escherichia coli [TaxId: 562]}
Probab=96.95 E-value=0.0011 Score=46.61 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=53.7
Q ss_pred CCCEEEecCCCCcccCCCcEeecCCCCCcccceeEEEEECCCC--CCCChhhHhhhhceeEEEeecccC
Q 033892 38 KEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKA--RDVPETTAMDYVGGFIFVKILLLL 104 (109)
Q Consensus 38 ~~P~~f~K~~~~i~~~~~~i~~P~~~~~ld~E~ELavVIGk~~--~~is~~~A~~~I~Gyti~ND~s~~ 104 (109)
.+|++..-..+.+..++..+.++... .+..|+||+++||++. +..+.+++.++|.++..+.++..+
T Consensus 75 ~~p~~g~l~~~~~~~~~~~i~~~~~~-~~~iE~Eiaf~i~~~~~~~~~~~~~v~~~i~~v~~~iEi~~~ 142 (261)
T d1sv6a_ 75 DQPDFGTLFADMCYGDNEIIPFSRVL-QPRIEAEIALVLNRDLPATDITFDELYNAIEWVLPALEVVGS 142 (261)
T ss_dssp SSCEEEEEEGGGEEETTEEECTTSSS-SCEEEEEEEEEESSCBCCTTCCHHHHHTTEEEEEEEEEEECC
T ss_pred CCcccccccCceEEeecccccccccc-ccceeeEEEEEecCccccccccHHHHHHHhhhcccchhcchh
Confidence 46777666666778888888776654 5889999999999994 578999999999999999988653
No 8
>d2gdta1 d.346.1.1 (A:2-116) Nsp1 {SARS coronavirus [TaxId: 227859]}
Probab=17.81 E-value=38 Score=19.86 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=13.6
Q ss_pred CCCEEEecCCCCcccC
Q 033892 38 KEPVLFLKPTSSYLGN 53 (109)
Q Consensus 38 ~~P~~f~K~~~~i~~~ 53 (109)
++|.+|+|.++++...
T Consensus 53 eqpyvfikrsdalstn 68 (115)
T d2gdta1 53 EQPYVFIKRSDALSTN 68 (115)
T ss_dssp CSCEEEEECCSSCCCC
T ss_pred cCceEEEEcccccccc
Confidence 7999999999987654
No 9
>d1tska_ g.3.7.2 (A:) Toxin ts kappa {Scorpion (Tityus serrulatus) [TaxId: 6887]}
Probab=13.26 E-value=38 Score=15.96 Aligned_cols=10 Identities=50% Similarity=0.674 Sum_probs=7.5
Q ss_pred EEECCCCCCC
Q 033892 74 VVIGQKARDV 83 (109)
Q Consensus 74 vVIGk~~~~i 83 (109)
+|||++|.+-
T Consensus 1 vvigqrcyrs 10 (35)
T d1tska_ 1 VVIGQRCYRS 10 (35)
T ss_dssp CEECCCCSSS
T ss_pred CcccccccCC
Confidence 5899998654
No 10
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=11.56 E-value=34 Score=19.56 Aligned_cols=17 Identities=12% Similarity=0.196 Sum_probs=13.9
Q ss_pred CCCCCChhhHhhhhcee
Q 033892 79 KARDVPETTAMDYVGGF 95 (109)
Q Consensus 79 ~~~~is~~~A~~~I~Gy 95 (109)
.+-.++.++|.+.|.|.
T Consensus 56 ~g~~~~~d~ARe~vYGM 72 (79)
T d2o35a1 56 SGVPMSKEESREIVYGM 72 (79)
T ss_dssp TTCCCCHHHHHHHHHSS
T ss_pred cCCCCCHHHHHHHHhCC
Confidence 35578999999999985
Done!