RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 033892
(109 letters)
>1saw_A Hypothetical protein FLJ36880; structural genomics,
fumarylacetoacetatehydrolase family, unknown function;
2.20A {Homo sapiens} SCOP: d.177.1.1
Length = 225
Score = 147 bits (373), Expect = 2e-46
Identities = 47/95 (49%), Positives = 64/95 (67%)
Query: 1 MATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVP 60
+ AS + + + G IV VGRNYA H +E+ +AV EPVLFLKP+++Y G I +P
Sbjct: 4 IMAASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMP 63
Query: 61 HPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGF 95
+LHHE+EL VV+G++ R VPE AMDYVGG+
Sbjct: 64 AYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGY 98
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural
genomics, PSI-2, protein structure initiative; HET:
TAR; 2.10A {Oleispira antarctica} PDB: 3v77_A*
Length = 224
Score = 139 bits (352), Expect = 4e-43
Identities = 35/79 (44%), Positives = 48/79 (60%)
Query: 17 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
KIV VGRNYAAHAKEL N +P P+LF+KP SS + G +P S+HHE+E+A++I
Sbjct: 17 KIVCVGRNYAAHAKELNNPIPSSPILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILI 76
Query: 77 GQKARDVPETTAMDYVGGF 95
G+ + + G
Sbjct: 77 GKALSRASTEQVAESIAGI 95
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid,
structural genomics, center for structural genomics O
infectious diseases; 2.01A {Yersinia pestis} PDB:
1nr9_A
Length = 221
Score = 138 bits (351), Expect = 6e-43
Identities = 31/79 (39%), Positives = 45/79 (56%)
Query: 17 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
K+V VG NYA H KE+G+ EPVLF+KP ++ + +P S+HHE+ELAV+I
Sbjct: 21 KVVCVGSNYAEHIKEMGSTASVEPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVLI 80
Query: 77 GQKARDVPETTAMDYVGGF 95
G + E + G+
Sbjct: 81 GTPLKQASEDRVARAIAGY 99
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom
initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus
thermophilus}
Length = 246
Score = 128 bits (324), Expect = 1e-38
Identities = 37/80 (46%), Positives = 51/80 (63%)
Query: 16 TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
KI+ V NYA HA+ELG + P+EP LF KP +S L + G + P +H+EVELAVV
Sbjct: 44 GKILGVALNYADHAEELGLSRPEEPALFWKPNTSLLPHKGVVLYPKGARFVHYEVELAVV 103
Query: 76 IGQKARDVPETTAMDYVGGF 95
+G+ + V A+DYV G+
Sbjct: 104 VGRPMKRVRAKDALDYVLGY 123
>3rr6_A Putative uncharacterized protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Length = 265
Score = 127 bits (322), Expect = 3e-38
Identities = 37/82 (45%), Positives = 56/82 (68%)
Query: 14 AGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELA 73
+K+VA+G+NYAAHA E+G P+ PV+F+KP +S +G G I++P +HHE ELA
Sbjct: 63 LASKVVAMGKNYAAHAAEMGGDPPESPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELA 122
Query: 74 VVIGQKARDVPETTAMDYVGGF 95
+VIG+ +DVP A + + G+
Sbjct: 123 IVIGRPCKDVPAARAAENILGY 144
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional
isomerase/decarboxylase; lyase, bifunctional enzyme,
multifunctional enzyme decarboxylase; 1.7A {Escherichia
coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Length = 429
Score = 128 bits (324), Expect = 5e-37
Identities = 36/79 (45%), Positives = 53/79 (67%)
Query: 17 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVI 76
+ A+G NYA HA EL P+EP++FLK ++ G+ T P+ ++ +H+E EL VVI
Sbjct: 224 TLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVI 283
Query: 77 GQKARDVPETTAMDYVGGF 95
G++AR+V E AMDYV G+
Sbjct: 284 GKQARNVSEADAMDYVAGY 302
Score = 114 bits (288), Expect = 6e-32
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 16 TKIVAVGRNYAAHAKELGNA--------VPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLH 67
I AV N+ + A PK V F+KP ++ +G G I P + +
Sbjct: 3 GTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNTVIGCGEPIPFP-QGEKVL 61
Query: 68 HEVELAVVIGQKARDVPETTAMDYVGGF 95
+A+++G+ A V E A +Y+ G+
Sbjct: 62 SGATVALIVGKTATKVREEDAAEYIAGY 89
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region;
dimer, PSI, protein structure initiative; 2.20A
{Saccharomyces cerevisiae} SCOP: d.177.1.1
Length = 259
Score = 120 bits (303), Expect = 2e-35
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 27/114 (23%)
Query: 9 QKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDS--- 65
++A KI+ +GRNYAAH KEL N+ PK+P FLKPTSS + + V +
Sbjct: 3 YNYLKAARKIICIGRNYAAHIKELNNSTPKQPFFFLKPTSSIVTPLSSSLVKTTRPANST 62
Query: 66 ---------------------LHHEVELAVVIGQKARDVPETT---AMDYVGGF 95
+HHE+ELA+++ + +V + D + G
Sbjct: 63 FNGLNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGV 116
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase,
structural GE NPPSFA; 2.20A {Thermus thermophilus}
Length = 264
Score = 114 bits (288), Expect = 4e-33
Identities = 40/93 (43%), Positives = 54/93 (58%), Gaps = 13/93 (13%)
Query: 16 TKIVAVGRNYAAHAKELGN----AVPKEPVLFLKPTSSYLGNGGTI-------EVPHPLD 64
TKIV VGRNY H +E+G+ +PKEP LFLK ++ G VP+P
Sbjct: 48 TKIVCVGRNYREHIREMGHDFGEDLPKEPGLFLKGPNALARPGNPRDPWGTAEPVPYPFF 107
Query: 65 S--LHHEVELAVVIGQKARDVPETTAMDYVGGF 95
+ LH+E ELAVV+G + R VP A+D+V G+
Sbjct: 108 TEELHYEGELAVVVGDRMRHVPPEKALDHVLGY 140
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc
genomics, seattle structural genomics center for
infectious isomerase; 1.95A {Mycobacterium abscessus}
Length = 329
Score = 106 bits (266), Expect = 3e-29
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 17 KIVAVGRNYAAHAK-ELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVV 75
+++A+G NY H+ + +PV+F+K +S G + P +L +E+E+AVV
Sbjct: 105 QVIALGFNYPTHSDTDSPLPKMADPVVFMKSPTSISGPRDAVIAPRTSHALDYEIEIAVV 164
Query: 76 IGQKARDVPETTAMDYVGGF 95
IG+ + + A+ +V G+
Sbjct: 165 IGKPGYRIERSQAIKHVAGY 184
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase;
2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X
2q1c_X 2q1d_X 3bqb_A
Length = 293
Score = 76.7 bits (189), Expect = 2e-18
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 16/81 (19%)
Query: 17 KIVAVGRNYAAHAKELGN---------------AVPKEPVLFLKPT-SSYLGNGGTIEVP 60
++ G +Y + P +F K T + +G+G I V
Sbjct: 75 EVWGSGISYEMARERYSEENVAKILGKTIYEKVYDAVRPEIFFKATPNRCVGHGEAIAVR 134
Query: 61 HPLDSLHHEVELAVVIGQKAR 81
+ E ELAVV+ +
Sbjct: 135 SDSEWTLPEPELAVVLDSNGK 155
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics,
PSI-2, protein structure initiative; 1.90A
{Sinorhizobium meliloti}
Length = 359
Score = 77.2 bits (190), Expect = 2e-18
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 8/87 (9%)
Query: 17 KIVAVGRNYAAHAK--------ELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHH 68
A G Y H + E+ + +P+++ + S+LG I + +
Sbjct: 100 FQWADGSAYVNHVELVRKARNAEMPASFWTDPLIYQGGSDSFLGPRDPILMADDAWGIDM 159
Query: 69 EVELAVVIGQKARDVPETTAMDYVGGF 95
E E AV++ A +
Sbjct: 160 EGEAAVIVDDVPMGATLDEAKAAIRLV 186
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A
{Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A
2hzy_A* 1qco_A 1qqj_A
Length = 421
Score = 44.4 bits (104), Expect = 1e-06
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 17/95 (17%)
Query: 21 VGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPH--------------PLDSL 66
VG + L PV + SS + +G I P L
Sbjct: 139 VGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLL 198
Query: 67 HHEVELAVVIGQK---ARDVPETTAMDYVGGFIFV 98
E+E+A +G +P + A +++ G + +
Sbjct: 199 DMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLM 233
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase,
enzyme function initiative, EFI, structural genomics;
1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Length = 279
Score = 31.0 bits (71), Expect = 0.047
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 12/55 (21%)
Query: 7 AVQKLIQAGTKIV-AVGRNYAA---HAKELGNAVPKEPVLFLKPTSSYLGNGGTI 57
+ ++ + G ++V A GR A EL +L SY NGG I
Sbjct: 30 TLIRIQEQGIRLVLASGRPTYGIVPLANELRMNEFGGFIL------SY--NGGEI 76
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural
genomics, protein structure initiative; 2.90A
{Lactobacillus brevis}
Length = 279
Score = 29.8 bits (68), Expect = 0.12
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 12/56 (21%)
Query: 7 AVQKLIQAGTKIV-AVGRNYAA---HAKELGNAVPKEPVLFLKPTSSYLGNGGTIE 58
AVQ G K+V GR + + + + ++ NG +
Sbjct: 30 AVQAAKAQGIKVVLCTGRPLTGVQPYLDAMDIDGDDQYAI------TF--NGSVAQ 77
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha
sandwich. stucture contains A magnesium ION., PSI,
protein structure initiative; 1.40A {Escherichia coli}
SCOP: c.108.1.10
Length = 282
Score = 29.8 bits (68), Expect = 0.14
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 12/55 (21%)
Query: 7 AVQKLIQAGTKIV-AVGRNYAA---HAKELGNAVPKEPVLFLKPTSSYLGNGGTI 57
A+ G +V GR YA + KEL P + + +Y NG +
Sbjct: 30 AIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCI------TY--NGALV 76
>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding,
oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL;
1.55A {Arthrobacter globiformis} SCOP: b.30.2.1
d.17.2.1 d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A*
2cfg_A* 2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A*
1sih_A* 1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A*
1av4_A* 1iqx_A* ...
Length = 646
Score = 29.0 bits (64), Expect = 0.25
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 56 TIEVPHPLDSL-HHEVELAVVIGQKARDVPETTAMDYVG 93
TI+ P E+ I + A + + Y+G
Sbjct: 3 TIQTASPFRLASAGEISEVQGILRTAGLLGPEKRIAYLG 41
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: EPE; 2.39A {Klebsiella pneumoniae
subsp}
Length = 285
Score = 27.5 bits (62), Expect = 0.69
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 27/103 (26%)
Query: 7 AVQKLIQAGTKIV-AVGRNYAA---HAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVP-- 60
++ L G V A GR+Y LG + ++ + NG +
Sbjct: 46 TLKLLTARGINFVFATGRHYIDVGQIRDNLGI---RSYMI------TS--NGARVHDSDG 94
Query: 61 -----HPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGFIFV 98
H LD ++A + + R+ P+ Y ++
Sbjct: 95 QQIFAHNLD-----RDIAADLFEIVRNDPKIVTNVYREDEWYM 132
>1ksi_A Copper amine oxidase; PEA seedling, oxidoreductase; HET: TPQ NAG;
2.20A {Pisum sativum} SCOP: b.30.2.1 d.17.2.1 d.17.2.1
PDB: 1w2z_A*
Length = 642
Score = 27.9 bits (61), Expect = 0.75
Identities = 12/45 (26%), Positives = 13/45 (28%), Gaps = 8/45 (17%)
Query: 59 VPHPLDSL-HHEVELAVVIGQKARDVPETTAMDYVGGFIFVKILL 102
V HPLD L E I Q + F I L
Sbjct: 1 VQHPLDPLTKEEFLAVQTIVQNKYPISNNR-------LAFHYIGL 38
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG,
unknown function; HET: MSE; 1.85A {Bacillus subtilis}
Length = 290
Score = 26.4 bits (59), Expect = 1.8
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 7 AVQKLIQAGTKIV-AVGRNYAA---HAKELG 33
A++ + + G + R++ + AK L
Sbjct: 31 AIEYVKKKGIYVTLVTNRHFRSAQKIAKSLK 61
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 26.8 bits (60), Expect = 1.8
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 39 EPVLFLKPTSSYLGNGGTIEV-PHPL------DSLHHEVELAVVIGQKARDVPET 86
PVLF + + +E+ PH L L + ++ + RD E
Sbjct: 743 SPVLFQEALWHVPEHAVVLEIAPHALLQAVLKRGLKPSCTIIPLMKKDHRDNLEF 797
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI,
protein structure initiative; 2.70A {Plasmodium vivax}
SCOP: c.108.1.10
Length = 301
Score = 26.4 bits (59), Expect = 2.1
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 9/55 (16%)
Query: 7 AVQKLIQAGTKIV-AVGRNYAA---HAKELGNAVPKEPVLFLKPTSSYLGNGGTI 57
A+++ I+ G + GR+ E K+ + P NG +
Sbjct: 53 AIKEAIEKGYMVSICTGRSKVGILSAFGEENL---KKMNFYGMPGVYI--NGTIV 102
>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate
decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A
{Saccharomyces cerevisiae} PDB: 3gdl_A* 3gdk_A* 3gdt_A*
3gdr_A* 1dqw_A 1dqx_A*
Length = 267
Score = 25.8 bits (56), Expect = 3.4
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Query: 18 IVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIG 77
++ EL A+ + LK L + PL +L + +
Sbjct: 33 CASLDVRTTKELLELVEAL-GPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFED 91
Query: 78 QKARDVPETTAMDYVGG 94
++ D+ T + Y G
Sbjct: 92 RRFADIGNTVKLQYSAG 108
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase;
structural genomics, PSI, protein structure initiative;
1.70A {Bacillus subtilis} SCOP: c.108.1.10
Length = 288
Score = 25.3 bits (56), Expect = 4.0
Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 7 AVQKLIQAGTKIV-AVGRNYAA---HAKELG 33
A+++ + G ++V + GR + + LG
Sbjct: 29 ALRQAQRDGIEVVVSTGRAHFDVMSIFEPLG 59
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 25.2 bits (56), Expect = 4.8
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 4 ASSAVQKLIQAGTKIVAV 21
L + G K++AV
Sbjct: 222 GRWTAYWLEKMGAKVIAV 239
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A
{Thermus thermophilus}
Length = 419
Score = 25.2 bits (56), Expect = 5.0
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 4 ASSAVQKLIQAGTKIVAV 21
++ + G ++VAV
Sbjct: 230 GAAVALHAERLGMRVVAV 247
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein,
structural genomics, unknown function; 2.60A
{Geobacillus kaustophilus} PDB: 2qyh_A
Length = 258
Score = 25.2 bits (56), Expect = 5.4
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 7 AVQKLIQAGTKIV-AVGRNYAA---HAKELG 33
AV++L Q+G + A GR K+LG
Sbjct: 28 AVRRLKQSGVYVAIATGRAPFMFEHVRKQLG 58
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 24.8 bits (55), Expect = 6.5
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 4 ASSAVQKLIQAGTKIVAV 21
S + + AG K++ +
Sbjct: 233 GSFLAKFMHDAGAKVIGI 250
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A
{Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB:
1hrd_A 1k89_A 1aup_A 2yfh_A
Length = 449
Score = 24.9 bits (55), Expect = 6.6
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 4 ASSAVQKLIQAGTKIVAV 21
A A +KL + G K V +
Sbjct: 242 AWGAAKKLAELGAKAVTL 259
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
3.10A {Plasmodium falciparum}
Length = 456
Score = 24.9 bits (55), Expect = 7.6
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 4 ASSAVQKLIQAGTKIVAV 21
A V+KLI+ G ++ +
Sbjct: 251 AQYLVEKLIEKGAIVLTM 268
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 24.5 bits (54), Expect = 7.8
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 2 ATASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAV 36
AT ++L+ AG ++V + +LG+
Sbjct: 24 ATT----KRLLDAGAQVVVLDIRGEDVVADLGDRA 54
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A
{Thermus thermophilus HB27} PDB: 3aoe_A
Length = 440
Score = 24.8 bits (55), Expect = 8.0
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 4 ASSAVQKLIQAGTKIVAV 21
++A + G ++VAV
Sbjct: 247 GNAAARAFHDHGARVVAV 264
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 24.8 bits (54), Expect = 8.0
Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 11/83 (13%)
Query: 13 QAGTKIVAVGRNYAAHAKEL-----------GNAVPKEPVLFLKPTSSYLGNGGTIEVPH 61
Q+GT V+ NY A K+ N K+P+ G +
Sbjct: 453 QSGTPHVSFKYNYDAEKKQYSIHVNQYTKPDENQKEKKPLFIPISVGLINPENGKEMISQ 512
Query: 62 PLDSLHHEVELAVVIGQKARDVP 84
L E + V + +P
Sbjct: 513 TTLELTKESDTFVFNNIAVKPIP 535
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 24.7 bits (54), Expect = 9.1
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 3 TASSAVQKLIQAGTKIVAVGRNYAAHAKELGNAVPKEPV 41
+ + G K+V R Y A EL A+ + +
Sbjct: 375 AGKALAYGAKEKGAKVVIANRTY-ERALELAEAIGGKAL 412
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase;
oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Length = 421
Score = 24.4 bits (54), Expect = 9.3
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 4 ASSAVQKLIQAGTKIVAV 21
+ V+ + + G K+ A+
Sbjct: 224 GTFTVKNIERQGGKVCAI 241
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.380
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,627,756
Number of extensions: 91843
Number of successful extensions: 271
Number of sequences better than 10.0: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 47
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)