BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033893
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 132 bits (332), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 71/88 (80%)
Query: 3 LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG 62
+F WF +LASLGLW K K+LFLGLDNAGKTTLLHMLK++RL QPT HPTSEEL+IG
Sbjct: 6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIG 65
Query: 63 KIKFKAFDLGGHQIARRVWKDYYAKVIG 90
IKF FDLGGH ARR+WKDY+ +V G
Sbjct: 66 NIKFTTFDLGGHIQARRLWKDYFPEVNG 93
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/93 (62%), Positives = 69/93 (74%), Gaps = 4/93 (4%)
Query: 2 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSE 57
F+FDW Y +L LGL++K K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSE
Sbjct: 3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE 62
Query: 58 ELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIG 90
EL+I + F FDLGGH ARRVWK+Y + G
Sbjct: 63 ELTIAGMTFTTFDLGGHIQARRVWKNYLPAING 95
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 66/86 (76%)
Query: 5 DWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI 64
+ F +L LGL++K K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I +
Sbjct: 20 NGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 79
Query: 65 KFKAFDLGGHQIARRVWKDYYAKVIG 90
F FDLGGH+ ARRVWK+Y + G
Sbjct: 80 TFTTFDLGGHEQARRVWKNYLPAING 105
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 115 bits (287), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 54/84 (64%), Positives = 64/84 (76%)
Query: 7 FYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66
F +L LGL++K K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I + F
Sbjct: 9 FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 68
Query: 67 KAFDLGGHQIARRVWKDYYAKVIG 90
FDLGGH ARRVWK+Y + G
Sbjct: 69 TTFDLGGHIQARRVWKNYLPAING 92
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/84 (63%), Positives = 63/84 (75%)
Query: 7 FYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66
F +L LGL++K K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I + F
Sbjct: 3 FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 62
Query: 67 KAFDLGGHQIARRVWKDYYAKVIG 90
FDLGG ARRVWK+Y + G
Sbjct: 63 TTFDLGGGIQARRVWKNYLPAING 86
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active
Fragment Of Sec31
Length = 167
Score = 108 bits (271), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 58/70 (82%)
Query: 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRV 80
K+LFLGLDNAGKTTLLHMLK++RL QPT HPTSEEL+IG IKF FDLGGH ARR+
Sbjct: 2 GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRL 61
Query: 81 WKDYYAKVIG 90
WKDY+ +V G
Sbjct: 62 WKDYFPEVNG 71
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 60.8 bits (146), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 43/76 (56%)
Query: 15 GLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGH 74
GL KE +IL LGLD AGKTT+L+ LK + V PT E ++ +KF +D+GG
Sbjct: 317 GLSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQ 376
Query: 75 QIARRVWKDYYAKVIG 90
R +W+ YY G
Sbjct: 377 DKIRPLWRHYYTGTQG 392
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
+E K++ +GLDNAGKTT+L+ +V PT EE+ I +F +D+GG + R
Sbjct: 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR 74
Query: 79 RVWKDYYAK 87
W YY
Sbjct: 75 SSWNTYYTN 83
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
+E K++ +GLDNAGKTT+L+ +V PT EE+ I +F +D+GG + R
Sbjct: 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR 74
Query: 79 RVWKDYYAK 87
W YY
Sbjct: 75 SSWNTYYTN 83
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
+E K++ +GLDNAGKTT+L+ +V PT EE+ I +F +D+GG + R
Sbjct: 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR 79
Query: 79 RVWKDYYAK 87
W YY
Sbjct: 80 SSWNTYYTN 88
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 16 LW--QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGG 73
LW KE +IL LGLD AGKTT+L+ L+ +V +PT E LS +K +DLGG
Sbjct: 12 LWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGG 71
Query: 74 HQIARRVWKDYYA 86
R W+ YYA
Sbjct: 72 QTSIRPYWRCYYA 84
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
+E K++ +GLDNAGKTT+L+ +V PT EE+ I +F +D+GG + R
Sbjct: 21 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR 80
Query: 79 RVWKDYYAKV 88
W YY
Sbjct: 81 SSWNTYYTNT 90
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
+E K++ +GLDNAGKTT+L+ +V PT EE+ + F +D+GG +
Sbjct: 14 NQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESL 73
Query: 78 RRVWKDYYAKV 88
R W YY+
Sbjct: 74 RSSWNTYYSNT 84
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+,
And Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
KE +IL LGLD AGKTT+L+ LK + V PT E ++ +KF +D+GG
Sbjct: 11 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 70
Query: 78 RRVWKDYYAKVIG 90
R +W+ YY G
Sbjct: 71 RPLWRHYYTGTQG 83
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
KE +IL LGLD AGKTT+L+ LK + V PT E ++ +KF +D+GG
Sbjct: 10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 69
Query: 78 RRVWKDYYAKVIG 90
R +W+ YY G
Sbjct: 70 RPLWRHYYTGTQG 82
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
+E +IL LGLD AGKTT+L+ L+ +V PT E ++ +KF+ +DLGG R
Sbjct: 1 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIR 60
Query: 79 RVWKDYYAKV 88
W+ YY+
Sbjct: 61 PYWRCYYSNT 70
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
KE +IL +GLD AGKTT+L+ LK ++ PT E + I F +D+GG
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNISFTVWDVGGQDRI 74
Query: 78 RRVWKDYYAKVIG 90
R +W+ YY G
Sbjct: 75 RSLWRHYYCNTEG 87
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
Length = 166
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
+E +IL LGLD AGKTT+L+ L+ +V PT E ++ +KF+ +DLGG R
Sbjct: 3 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 62
Query: 79 RVWKDYYAKV 88
W+ YY+
Sbjct: 63 PYWRCYYSNT 72
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
KE +IL LGLD AGKTT+L+ LK + V PT E ++ +KF +D+GG
Sbjct: 11 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKI 70
Query: 78 RRVWKDYYAKVIG 90
R +W+ YY G
Sbjct: 71 RPLWRHYYTGTQG 83
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
+E +IL LGLD AGKTT+L+ L+ +V PT E ++ +KF+ +DLGG R
Sbjct: 6 REXRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIR 65
Query: 79 RVWKDYYAKV 88
W+ YY+
Sbjct: 66 PYWRCYYSNT 75
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
KE +IL +GLD AGKTT+L+ LK ++ PT E + I F +D+GG
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRI 74
Query: 78 RRVWKDYYAKVIG 90
R +W+ YY G
Sbjct: 75 RSLWRHYYRNTEG 87
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
KE +IL +GLD AGKTT+L+ LK ++ PT E + I F +D+GG
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRI 74
Query: 78 RRVWKDYYAKVIG 90
R +W+ YY G
Sbjct: 75 RSLWRHYYRNTEG 87
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
E +IL LGLDNAGKTTLL L E + PTQ + + K +D+GG + R
Sbjct: 3 SEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 62
Query: 79 RVWKDYYAK------VIGSFKTKKIE 98
W+ Y+ VI S K+ E
Sbjct: 63 PYWRSYFENTDILIYVIDSADRKRFE 88
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
+E +IL LGLDNAGKTTLL L E + PTQ + + K +D+GG + R
Sbjct: 16 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 75
Query: 79 RVWKDYYAK------VIGSFKTKKIE 98
W+ Y+ VI S K+ E
Sbjct: 76 PYWRSYFENTDILIYVIDSADRKRFE 101
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
+E +IL LGLDNAGKTTLL L E + PTQ + + K +D+GG + R
Sbjct: 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIR 74
Query: 79 RVWKDYYAK------VIGSFKTKKIE 98
W+ Y+ VI S K+ E
Sbjct: 75 PYWRSYFENTDILIYVIDSADRKRFE 100
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
+K+ +IL +GLD AGKTT+L+ +K +V PT E + I F +D+GG
Sbjct: 15 KKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKI 74
Query: 78 RRVWKDYYAKVIG 90
R +W+ YY+ G
Sbjct: 75 RPLWRHYYSNTDG 87
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
+KE +IL +GLD AGKTT+L+ LK +V PT E + I F +D+GG
Sbjct: 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 222
Query: 78 RRVWKDYYAKVIG 90
R +W+ Y+ G
Sbjct: 223 RPLWRHYFQNTQG 235
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 12 ASLGLW------QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIK 65
S+G W +KE +IL +GLD AGKT++L+ LK +V PT E + I
Sbjct: 3 GSMGSWLSKLLGKKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKNIS 62
Query: 66 FKAFDLGGHQIARRVWKDYY 85
F +D+GG R +W+ YY
Sbjct: 63 FTVWDVGGQDKIRPLWRHYY 82
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARR 79
E +IL LGLD AGKTT+L+ LK + V PT E ++ +KF +D+GG R
Sbjct: 3 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 62
Query: 80 VWKDYYAKVIG 90
+W+ YY G
Sbjct: 63 LWRHYYTGTQG 73
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
Length = 172
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARR 79
E +IL LGLD AGKTT+L+ LK + V PT E ++ +KF +D+GG R
Sbjct: 2 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRP 61
Query: 80 VWKDYYAKVIG 90
+W+ YY G
Sbjct: 62 LWRHYYTGTQG 72
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 8 YGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67
+G L S +KE +IL +GLD AGKTT+L+ LK +V PT E + I F
Sbjct: 8 FGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 67
Query: 68 AFDLGGHQIARRVWKDYYAKVIG-------SFKTKKIEFRD 101
+D+GG R +W+ Y+ G + + + +E RD
Sbjct: 68 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 108
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
+IL LGLD AGKTT+L+ LK + V PT E ++ +KF +D+GG R +W
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 82 KDYYAKVIG 90
+ YY G
Sbjct: 62 RHYYTGTQG 70
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIAR 78
E +IL LGLDNAGKTTLL L E + PTQ + + K +D+GG + R
Sbjct: 3 SEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGLRKIR 62
Query: 79 RVWKDYYAK------VIGSFKTKKIE 98
W+ Y+ VI S K+ E
Sbjct: 63 PYWRSYFENTDILIYVIDSADRKRFE 88
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
+IL LGLD AGKTT+L+ LK + V PT E ++ +KF +D+GG R +W
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 82 KDYYAKVIG 90
+ YY G
Sbjct: 62 RHYYTGTQG 70
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Monomeric Crystal Form
Length = 181
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
+KE +IL +GLD AGKTT+L+ LK +V PT E + I F +D+GG
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 78 RRVWKDYYAKVIG 90
R +W+ Y+ G
Sbjct: 75 RPLWRHYFQNTQG 87
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
+KE +IL +GLD AGKTT+L+ LK +V PT E + I F +D+GG
Sbjct: 14 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 73
Query: 78 RRVWKDYYAKVIG 90
R +W+ Y+ G
Sbjct: 74 RPLWRHYFQNTQG 86
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
+K+ +IL +GLD AGKTT+L+ LK +V PT E + I F +D+GG
Sbjct: 15 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRI 74
Query: 78 RRVWKDYYAKVIG 90
R +WK Y+ G
Sbjct: 75 RPLWKHYFQNTQG 87
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
+IL LGLD AGKTT+L+ LK + V PT E ++ +KF +D+GG R +W
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 82 KDYYAKVIG 90
+ YY G
Sbjct: 62 RHYYTGTQG 70
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
Length = 164
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
+IL +GLD AGKTT+L+ LK ++ PT E + I F +D+GG R +W
Sbjct: 2 RILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLW 61
Query: 82 KDYYAKVIG 90
+ YY G
Sbjct: 62 RHYYRNTEG 70
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
+K+ +IL +GLD AGKTT+L+ LK +V PT E + I F +D+GG
Sbjct: 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKI 86
Query: 78 RRVWKDYYAKVIG 90
R +W+ Y+ G
Sbjct: 87 RPLWRHYFQNTQG 99
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed
With Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain
Carrying The Mutation Of The Catalytic Glutamate To
Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
+IL +GLD AGKTT+L+ LK +V PT E + I F +D+GG R +W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 82 KDYYAKVIG 90
+ Y+ G
Sbjct: 62 RHYFQNTQG 70
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
++E ++L LGLDNAGKTT+L E + PT + L K +D+GG +
Sbjct: 14 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 73
Query: 78 RRVWKDYYAKVIG 90
R W++Y+ G
Sbjct: 74 RSYWRNYFESTDG 86
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIA 77
++E ++L LGLDNAGKTT+L E + PT + L K +D+GG +
Sbjct: 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSL 75
Query: 78 RRVWKDYYAKVIG 90
R W++Y+ G
Sbjct: 76 RSYWRNYFESTDG 88
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 10 ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF 69
IL + ++E ++L LGLDNAGKTT+L E + PT + L K +
Sbjct: 8 ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIW 67
Query: 70 DLGGHQIARRVWKDYYAKVIG 90
D+GG + R W++Y+ G
Sbjct: 68 DVGGQKSLRSYWRNYFESTDG 88
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In
Complex With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
+IL +GLD AGKTT+L+ LK +V PT E + I F +D+GG R +W
Sbjct: 4 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPLW 63
Query: 82 KDYYAKVIG 90
+ Y+ G
Sbjct: 64 RHYFQNTQG 72
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like
6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like
6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like
6
Length = 190
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQ--PTQHPTSEELSIGKIKFKAFDLGGHQI 76
KE +L LGLDN+GKTT+++ LK PT + E+ + F FD+ G
Sbjct: 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGR 79
Query: 77 ARRVWKDYY 85
R +W+ YY
Sbjct: 80 YRNLWEHYY 88
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 14 LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTS------EELSIGKIKFK 67
+G + + +++ GLDN+GKTT+++ +K + ++H T+ E G++ F
Sbjct: 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQ----SSSKHITATVGYNVETFEKGRVAFT 66
Query: 68 AFDLGGHQIARRVWKDYYAKV 88
FD+GG + R +W+ YY +
Sbjct: 67 VFDMGGAKKFRGLWETYYDNI 87
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 6 WFYGILASLGLWQKEAKI--LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63
W + +LGL + KI L LGLDNAGKT++L+ L +V PT E L
Sbjct: 6 WLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKN 65
Query: 64 IKFKAFDLGGHQIARRVWKDYYA 86
I F+ +DLGG R W+ Y++
Sbjct: 66 ISFEVWDLGGQTGVRPYWRCYFS 88
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW 81
++L LGLDNAGKTT+L E + PT + L K +D+GG + R W
Sbjct: 3 RLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSYW 62
Query: 82 KDYYAKVIG 90
++Y+ G
Sbjct: 63 RNYFESTDG 71
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 4 FDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQHPTSEELSIG 62
DWF + W++E ++ +GL +GKTT ++++ + + PT +++ G
Sbjct: 20 LDWFKALF-----WKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKG 74
Query: 63 KIKFKAFDLGGHQIARRVWKDYYAKV 88
+ K +D+GG R +W+ Y V
Sbjct: 75 NVTIKLWDIGGQPRFRSMWERYCRGV 100
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 29 DNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKV 88
DNAGKTT+L E + PT + L K +D+GG + R W++Y+
Sbjct: 27 DNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86
Query: 89 IG 90
G
Sbjct: 87 DG 88
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEE-----LSIG--KIKFKAFDLGGH 74
K L +G GK+ LLH + + Q + H E +++G +K + +D G
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKF--KQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 75 QIARRVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW 109
+ R V + YY G+ I R+ Y W
Sbjct: 85 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAW 119
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQHPTSEELSIGKIKFKAFDLGGHQI 76
++E ++ +GL +GKTT ++++ + + PT +++ G + K +D+GG
Sbjct: 20 KEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPR 79
Query: 77 ARRVWKDYYAKV 88
R +W+ Y V
Sbjct: 80 FRSMWERYCRGV 91
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQHPTSEELSIGKIKFKAFDLGGHQI 76
++E ++ +GL +GKTT ++++ + + PT +++ G + K +D+GG
Sbjct: 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPR 79
Query: 77 ARRVWKDYYAKV 88
R +W+ Y V
Sbjct: 80 FRSMWERYCRGV 91
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 32.3 bits (72), Expect = 0.073, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 9 GILASLGLWQKEAKILFLGLDNAGKTTLLHML--KDERLVQHQP--TQHPTSEELSIGKI 64
GIL + GL +++ +G N GK+TLL+ L +D +V P T+ SEE+ I I
Sbjct: 237 GILLNRGL-----RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI 291
Query: 65 KFKAFDLGG 73
F+ D G
Sbjct: 292 LFRIVDTAG 300
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 32.0 bits (71), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEE-------LSIGKIKFKAFDLGGH 74
K + +G GK+ LLH +++ + P H E +S KIK + +D G
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCP--HTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 74
Query: 75 QIARRVWKDYYAKVIGSFKTKKIEFRDFYE 104
+ R V + YY G+ I R Y
Sbjct: 75 ERFRAVTRSYYRGAAGALMVYDITRRSTYN 104
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERL---VQHQPTQHPTSEELSIGK--IKFKAFDLGGHQI 76
K L +G GK+ LLH +++ H S+ +++G +K + +D G +
Sbjct: 13 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 72
Query: 77 ARRVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW 109
R V + YY G+ I R+ Y W
Sbjct: 73 FRSVTRSYYRGAAGALLVYDITSRETYNALTNW 105
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERL---VQHQPTQHPTSEELSIGK--IKFKAFDLGGHQI 76
K L +G GK+ LLH +++ H S+ +++G +K + +D G +
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 77 ARRVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW 109
R V + YY G+ I R+ Y W
Sbjct: 72 FRSVTRSYYRGAAGALLVYDITSRETYNALTNW 104
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEE-------LSIGKIKFKAFDLGGH 74
K + +G GK+ LLH +++ + P H E +S KIK + +D G
Sbjct: 32 KYIIIGDMGVGKSCLLHQFTEKKFMADCP--HTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 89
Query: 75 QIARRVWKDYYAKVIGSFKTKKIEFRDFYE 104
R V + YY G+ I R Y
Sbjct: 90 GRFRAVTRSYYRGAAGALMVYDITRRSTYN 119
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERL---VQHQPTQHPTSEELSIGK--IKFKAFDLGGHQI 76
K L +G GK+ LLH +++ H S+ +++G +K + +D G +
Sbjct: 10 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLER 69
Query: 77 ARRVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW 109
R V + YY G+ I R+ Y W
Sbjct: 70 FRSVTRSYYRGAAGALLVYDITSRETYNALTNW 102
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 21 AKILFLGLDNAGKTTLLHMLKDERL--VQHQP 50
A++L +G+ N GK+T+++ LK +R V QP
Sbjct: 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQP 131
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 9 GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG-KIKFK 67
G L G + KI+ +G N GKT L + R P E +IG + +
Sbjct: 9 GSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRF--------PDRTEATIGVDFRER 60
Query: 68 AFDLGGHQIARRVW 81
A D+ G +I ++W
Sbjct: 61 AVDIDGERIKIQLW 74
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 28 LDNAGKTTLLHMLKDER--LVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYY 85
LDN K + + ++ L+ +PT+ + I + FK D+GG + R+ W + +
Sbjct: 163 LDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECF 222
Query: 86 AKV 88
V
Sbjct: 223 DSV 225
>pdb|1S9H|A Chain A, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|B Chain B, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|C Chain C, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
Length = 268
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 27 GLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYA 86
LDNAGK L + LV QP E++S +I +K +L G+ Y A
Sbjct: 44 ALDNAGKIMSLTKTAPDYLVGQQPV-----EDISSNRI-YKILELNGYD------PQYAA 91
Query: 87 KVIGSFKTKKIEFRD 101
V + TKK R+
Sbjct: 92 SVFLGWATKKFGKRN 106
>pdb|1U0J|A Chain A, Crystal Structure Of Aav2 Rep40-adp Complex
Length = 267
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 27 GLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYA 86
LDNAGK L + LV QP E++S +I +K +L G+ Y A
Sbjct: 43 ALDNAGKIMSLTKTAPDYLVGQQPV-----EDISSNRI-YKILELNGYD------PQYAA 90
Query: 87 KVIGSFKTKKIEFRD 101
V + TKK R+
Sbjct: 91 SVFLGWATKKFGKRN 105
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 9 GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT---SEELSI--GK 63
G +A+ G AK++ LG AGK++L+ ++ V+ Q + S+ L++
Sbjct: 1 GSMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT 60
Query: 64 IKFKAFDLGG----HQIARRVWKDYYAKVI 89
+KF+ +D G H +A ++ A +I
Sbjct: 61 VKFEIWDTAGQERYHSLAPMYYRGAAAAII 90
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 11 LASLGLWQKEAKILFLGLDNAGKTTLL-HMLKDERLVQHQPT----QHPTSEELSIGKIK 65
+A+ G Q + K++ +G GKTT + L E ++ PT HP + G IK
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 66 FKAFDLGGHQ 75
F +D G +
Sbjct: 61 FNVWDTAGQE 70
>pdb|2P2S|A Chain A, Crystal Structure Of Putative Oxidoreductase (Yp_050235.1)
From Erwinia Carotovora Atroseptica Scri1043 At 1.25 A
Resolution
pdb|2P2S|B Chain B, Crystal Structure Of Putative Oxidoreductase (Yp_050235.1)
From Erwinia Carotovora Atroseptica Scri1043 At 1.25 A
Resolution
Length = 336
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 13/61 (21%)
Query: 5 DWFY------GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEE 58
DWFY GIL +G+ Q E + F G NA ++ + H P HP E+
Sbjct: 165 DWFYQKRQYGGILCDIGIHQIEQFLYFTGNTNA------RVVTSQTANYHHP-HHPEFED 217
Query: 59 L 59
Sbjct: 218 F 218
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 22 KILFLGLDNAGKTTLLHML--KDERLVQHQP--TQHPTSEELSIGKIKFKAFDLGGHQIA 77
K+ +G N GK+TL + + K+ LV P T+ P +E+ I K+ D G +
Sbjct: 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRK 241
Query: 78 RRV 80
RV
Sbjct: 242 SRV 244
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 28 LDNAGKTTLLHMLKDER--LVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYY 85
LDN K + + ++ L+ +PT+ + I + FK D+GG + R+ W + +
Sbjct: 139 LDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECF 198
Query: 86 AKVIG 90
V
Sbjct: 199 DSVTS 203
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQP---TQHPTSEELSIGKIKFKAFDLG 72
+ ++ + +G + GKTTLL ++ ++ + + TQH + ++++ K D
Sbjct: 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTP 63
Query: 73 GHQ 75
GH+
Sbjct: 64 GHE 66
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 58 ELSIGKIKFKAFDLGGHQIARRVW 81
+ + K+ F FD+GG + RR W
Sbjct: 211 KFQVDKVNFHMFDVGGQRDERRKW 234
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 58 ELSIGKIKFKAFDLGGHQIARRVW 81
+ + K+ F FD+GG + RR W
Sbjct: 211 KFQVDKVNFHMFDVGGQRDERRKW 234
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 58 ELSIGKIKFKAFDLGGHQIARRVW 81
+ + K+ F FD+GG + RR W
Sbjct: 211 KFQVDKVNFHMFDVGGQRDERRKW 234
>pdb|3CZP|A Chain A, Crystal Structure Of Putative Polyphosphate Kinase 2
From Pseudomonas Aeruginosa Pa01
pdb|3CZP|B Chain B, Crystal Structure Of Putative Polyphosphate Kinase 2
From Pseudomonas Aeruginosa Pa01
Length = 500
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 23 ILFLGLDNAGKTTLLHMLK---DERLVQHQPTQHPTSEELS 60
IL G++ AGK + +L D RL++ Q P+ EEL
Sbjct: 46 ILINGIEGAGKGETVKLLNEWXDPRLIEVQSFLRPSDEELE 86
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With
Rab33 Gtpase Bound To Gdp And Alf3
Length = 198
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG-KIKFKAFDLGGHQIARRV 80
KI+ +G N GKT L + R P E +IG + +A D+ G +I ++
Sbjct: 31 KIIVIGDSNVGKTCLTYRFCAGRF--------PDRTEATIGVDFRERAVDIDGERIKIQL 82
Query: 81 W 81
W
Sbjct: 83 W 83
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 58 ELSIGKIKFKAFDLGGHQIARRVW 81
+ + K+ F FD+GG + RR W
Sbjct: 197 KFQVDKVNFHMFDVGGQRDERRKW 220
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 58 ELSIGKIKFKAFDLGGHQIARRVW 81
+ + K+ F FD+GG + RR W
Sbjct: 197 KFQVDKVNFHMFDVGGQRDERRKW 220
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 28 LDNAGKTTLLHMLKDER--LVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYY 85
LDN K + + ++ L+ +PT+ + + FK FD+GG + R+ W + +
Sbjct: 142 LDNLDKLGVPDYIPSQQDILLARRPTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECF 201
Query: 86 AKVIG 90
V
Sbjct: 202 EGVTA 206
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 22 KILFLGLDNAGKTTLL-HMLKDERLVQHQPT---QHPTSE-ELSIGKIKFKAFDLGGHQI 76
KI+ +G GK+ LL DE ++ + T + T E+ KIK + +D G +
Sbjct: 12 KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLER 71
Query: 77 ARRVWKDYYAKVIGSFKTKKIEFRDFYEVEIFW 109
R + YY +G+ I YE W
Sbjct: 72 YRAITSAYYRGAVGALIVYDISKSSSYENCNHW 104
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 11 LASLGLWQKEAKILFLGLDNAGKTTLL-HMLKDERLVQHQPT----QHPTSEELSIGKIK 65
+A+ G Q + K++ +G GKTT + L E ++ PT HP + G IK
Sbjct: 1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 66 FKAFDLGGHQ 75
F +D G +
Sbjct: 61 FNVWDTAGQE 70
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHP--TSEELSIGKIKFKAF 69
++I +G + AGK+TL+++L E L PT T E I IK AF
Sbjct: 694 SRIAVIGPNGAGKSTLINVLTGELL----PTSGEVYTHENCRIAYIKQHAF 740
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHP--TSEELSIGKIKFKAF 69
++I +G + AGK+TL+++L E L PT T E I IK AF
Sbjct: 700 SRIAVIGPNGAGKSTLINVLTGELL----PTSGEVYTHENCRIAYIKQHAF 746
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHP--TSEELSIGKIKFKAF 69
++I +G + AGK+TL+++L E L PT T E I IK AF
Sbjct: 700 SRIAVIGPNGAGKSTLINVLTGELL----PTSGEVYTHENCRIAYIKQHAF 746
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 28 LDNAGKTTLLHMLKDER--LVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYY 85
LDN K + + ++ L+ +PT+ + I + FK D+GG + R+ W + +
Sbjct: 139 LDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDFEIKNVPFKMVDVGGLRSERKRWFECF 198
Query: 86 AKVIG 90
V
Sbjct: 199 DSVTS 203
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 27 GLDNAGKTTLLHML--KDERLVQHQP-TQHPTSEELSI-GKIKFKAFDLGG 73
G NAGK+TLL+ L ++ +V H P T EE I K F+ D G
Sbjct: 240 GKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAG 290
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 20 EAKILFLGLDNAGKTTLLHML-KDERLVQHQPT---QHPTSEELSIGKIKFKAFDLGG 73
+ KI+ +G GKT LLH+ KD + PT + S E+ +I+ +D G
Sbjct: 7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG 64
>pdb|1Q2E|A Chain A, Cellobiohydrolase Cel7a With Loop Deletion 245-252 And
Bound Non- Hydrolysable Cellotetraose
pdb|1Q2E|B Chain B, Cellobiohydrolase Cel7a With Loop Deletion 245-252 And
Bound Non- Hydrolysable Cellotetraose
Length = 426
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 62 GKIKFKAFDLGGHQIARRVWKDYYAKVI 89
G +FK GG + +W DYYA ++
Sbjct: 340 GLTQFKKATSGGMVLVMSLWDDYYANML 367
>pdb|1Q2B|A Chain A, Cellobiohydrolase Cel7a With Disulphide Bridge Added
Across Exo-Loop By Mutations D241c And D249c
Length = 434
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 62 GKIKFKAFDLGGHQIARRVWKDYYAKVI 89
G +FK GG + +W DYYA ++
Sbjct: 348 GLTQFKKATSGGMVLVMSLWDDYYANML 375
>pdb|2CEL|A Chain A, Active-Site Mutant E212q Determined At Ph 6.0 With No
Ligand Bound In The Active Site
pdb|2CEL|B Chain B, Active-Site Mutant E212q Determined At Ph 6.0 With No
Ligand Bound In The Active Site
pdb|3CEL|A Chain A, Active-Site Mutant E212q Determined At Ph 6.0 With
Cellobiose Bound In The Active Site
pdb|5CEL|A Chain A, Cbh1 (E212q) Cellotetraose Complex
pdb|6CEL|A Chain A, Cbh1 (E212q) Cellopentaose Complex
Length = 434
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 62 GKIKFKAFDLGGHQIARRVWKDYYAKVI 89
G +FK GG + +W DYYA ++
Sbjct: 348 GLTQFKKATSGGMVLVMSLWDDYYANML 375
>pdb|7CEL|A Chain A, Cbh1 (E217q) In Complex With Cellohexaose And Cellobiose
Length = 434
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 62 GKIKFKAFDLGGHQIARRVWKDYYAKVI 89
G +FK GG + +W DYYA ++
Sbjct: 348 GLTQFKKATSGGMVLVMSLWDDYYANML 375
>pdb|4CEL|A Chain A, Active-site Mutant D214n Determined At Ph 6.0 With No
Ligand Bound In The Active Site
pdb|4CEL|B Chain B, Active-site Mutant D214n Determined At Ph 6.0 With No
Ligand Bound In The Active Site
Length = 434
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 62 GKIKFKAFDLGGHQIARRVWKDYYAKVI 89
G +FK GG + +W DYYA ++
Sbjct: 348 GLTQFKKATSGGMVLVMSLWDDYYANML 375
>pdb|1CEL|A Chain A, The Three-Dimensional Crystal Structure Of The Catalytic
Core Of Cellobiohydrolase I From Trichoderma Reesei
pdb|1CEL|B Chain B, The Three-Dimensional Crystal Structure Of The Catalytic
Core Of Cellobiohydrolase I From Trichoderma Reesei
pdb|1DY4|A Chain A, Cbh1 In Complex With S-Propranolol
pdb|2V3I|A Chain A, Hypocrea Jecorina Cel7a In Complex With (R)-Dihydroxy-
Phenanthrenolol
pdb|2V3R|A Chain A, Hypocrea Jecorina Cel7a In Complex With (S)-Dihydroxy-
Phenanthrenolol
Length = 434
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 62 GKIKFKAFDLGGHQIARRVWKDYYAKVI 89
G +FK GG + +W DYYA ++
Sbjct: 348 GLTQFKKATSGGMVLVMSLWDDYYANML 375
>pdb|1EGN|A Chain A, Cellobiohydrolase Cel7a (E223s, A224h, L225v, T226a,
D262g) Mutant
Length = 434
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 62 GKIKFKAFDLGGHQIARRVWKDYYAKVI 89
G +FK GG + +W DYYA ++
Sbjct: 348 GLTQFKKATSGGMVLVMSLWDDYYANML 375
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 21 AKILFLGLDNAGKTTLLHML 40
A I+F G N GK+TL++ L
Sbjct: 2 ATIIFAGRSNVGKSTLIYRL 21
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit
Alpha ( Gnai3) In Complex With An Engineered Regulator
Of G- Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLK 41
KE K+L LG +GK+T++ +K
Sbjct: 31 KEVKLLLLGAGESGKSTIVKQMK 53
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 17 WQ--KEAKILFLGLDNAGKTTLLHMLK 41
WQ K K + GL+ AGKTTLL++L
Sbjct: 42 WQIAKGDKWILYGLNGAGKTTLLNILN 68
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLK 41
KE K+L LG +GK+T++ +K
Sbjct: 1 KEVKLLLLGAGESGKSTIVKQMK 23
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLK 41
KE K+L LG +GK+T++ +K
Sbjct: 8 KEVKLLLLGAGESGKSTIVKQMK 30
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 19 KEAKILFLGLDNAGKTTLLHMLK 41
KE K+L LG +GK+T++ +K
Sbjct: 8 KEVKLLLLGAGESGKSTIVKQMK 30
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 20 EAKILFLGLDNAGKTTLLHML-KDERLVQHQPT---QHPTSEELSIGKIKFKAFDLGG 73
+ KI+ +G GKT LLH+ KD + PT + S E+ +I+ +D G
Sbjct: 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG 85
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A
Rock-i:rhoe Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A
Rock-i:rhoe Complex Structure
Length = 200
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 20 EAKILFLGLDNAGKTTLLHML-KDERLVQHQPT---QHPTSEELSIGKIKFKAFDLGG 73
+ KI+ +G GKT LLH+ KD + PT + S E+ +I+ +D G
Sbjct: 23 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.142 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,378,650
Number of Sequences: 62578
Number of extensions: 124566
Number of successful extensions: 695
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 118
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)