Query 033893
Match_columns 109
No_of_seqs 111 out of 2272
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 07:29:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033893.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033893hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0070 GTP-binding ADP-ribosy 99.9 5.1E-22 1.1E-26 134.0 5.5 90 16-105 13-102 (181)
2 KOG0073 GTP-binding ADP-ribosy 99.8 1.4E-20 3E-25 125.2 8.8 97 7-103 3-99 (185)
3 cd00879 Sar1 Sar1 subfamily. 99.8 3.2E-20 7E-25 125.6 10.1 101 3-103 2-102 (190)
4 KOG0071 GTP-binding ADP-ribosy 99.8 2E-20 4.4E-25 122.1 7.5 100 5-105 3-102 (180)
5 KOG0077 Vesicle coat complex C 99.8 2E-20 4.3E-25 124.8 6.9 101 1-101 1-101 (193)
6 PF00025 Arf: ADP-ribosylation 99.8 2.4E-19 5.2E-24 121.1 10.4 95 8-102 2-96 (175)
7 smart00178 SAR Sar1p-like memb 99.8 4.6E-19 1E-23 120.2 9.5 100 4-103 1-100 (184)
8 KOG0092 GTPase Rab5/YPT51 and 99.8 3.1E-19 6.8E-24 121.3 5.9 91 19-109 4-99 (200)
9 KOG0084 GTPase Rab1/YPT1, smal 99.8 4.7E-19 1E-23 120.8 6.6 89 21-109 10-103 (205)
10 PTZ00133 ADP-ribosylation fact 99.8 6E-18 1.3E-22 114.8 9.8 90 16-105 13-102 (182)
11 KOG0074 GTP-binding ADP-ribosy 99.8 8.3E-18 1.8E-22 110.1 9.9 97 8-104 4-102 (185)
12 PLN00223 ADP-ribosylation fact 99.8 6.7E-18 1.5E-22 114.5 9.4 89 16-104 13-101 (181)
13 smart00177 ARF ARF-like small 99.7 2.5E-17 5.5E-22 110.8 9.2 88 18-105 11-98 (175)
14 KOG0075 GTP-binding ADP-ribosy 99.7 3.1E-18 6.7E-23 112.6 4.2 102 2-104 3-105 (186)
15 KOG0080 GTPase Rab18, small G 99.7 1.4E-17 3E-22 111.0 7.1 89 21-109 12-105 (209)
16 cd04154 Arl2 Arl2 subfamily. 99.7 2.7E-17 5.8E-22 110.0 8.3 96 9-104 3-98 (173)
17 cd04150 Arf1_5_like Arf1-Arf5- 99.7 2.9E-17 6.4E-22 108.9 8.2 84 22-105 2-85 (159)
18 cd04149 Arf6 Arf6 subfamily. 99.7 5.4E-17 1.2E-21 108.7 8.4 88 18-105 7-94 (168)
19 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.7 3.2E-17 7E-22 112.0 6.8 95 15-109 17-116 (221)
20 cd04120 Rab12 Rab12 subfamily. 99.7 6.4E-17 1.4E-21 111.9 8.0 88 22-109 2-94 (202)
21 cd04161 Arl2l1_Arl13_like Arl2 99.7 7.9E-17 1.7E-21 107.6 7.8 83 22-104 1-83 (167)
22 cd04158 ARD1 ARD1 subfamily. 99.7 1.3E-16 2.9E-21 106.5 8.0 85 22-106 1-85 (169)
23 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 2.7E-16 5.8E-21 104.8 8.3 82 23-104 2-84 (164)
24 cd04159 Arl10_like Arl10-like 99.7 3.9E-16 8.5E-21 101.2 7.9 82 22-103 1-83 (159)
25 cd01875 RhoG RhoG subfamily. 99.7 3.3E-16 7.2E-21 106.8 7.8 88 20-107 3-94 (191)
26 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 7.1E-16 1.5E-20 103.5 9.0 86 18-103 13-98 (174)
27 cd04155 Arl3 Arl3 subfamily. 99.7 7.1E-16 1.5E-20 102.6 8.7 92 10-101 4-95 (173)
28 cd01874 Cdc42 Cdc42 subfamily. 99.6 7.3E-16 1.6E-20 103.9 7.9 85 22-106 3-91 (175)
29 cd04121 Rab40 Rab40 subfamily. 99.6 7.6E-16 1.6E-20 105.5 8.1 90 20-109 6-100 (189)
30 cd04128 Spg1 Spg1p. Spg1p (se 99.6 8.9E-16 1.9E-20 104.2 8.0 88 22-109 2-94 (182)
31 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 8.1E-16 1.8E-20 105.4 7.8 88 22-109 2-95 (201)
32 cd04157 Arl6 Arl6 subfamily. 99.6 9E-16 1.9E-20 100.7 7.6 82 22-103 1-84 (162)
33 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 1.4E-15 3.1E-20 102.9 8.3 86 19-104 2-92 (183)
34 PLN00023 GTP-binding protein; 99.6 1.2E-15 2.7E-20 111.9 8.1 91 19-109 20-128 (334)
35 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 1.5E-15 3.1E-20 103.4 8.0 90 20-109 5-99 (182)
36 cd04117 Rab15 Rab15 subfamily. 99.6 2.1E-15 4.6E-20 99.9 8.1 88 22-109 2-94 (161)
37 cd04102 RabL3 RabL3 (Rab-like3 99.6 1.6E-15 3.5E-20 104.9 7.7 88 22-109 2-99 (202)
38 PLN03071 GTP-binding nuclear p 99.6 1.6E-15 3.6E-20 105.7 7.8 92 18-109 11-107 (219)
39 KOG0078 GTP-binding protein SE 99.6 1.3E-15 2.7E-20 104.9 7.0 89 21-109 13-106 (207)
40 cd04136 Rap_like Rap-like subf 99.6 3.1E-15 6.7E-20 98.3 8.5 86 21-106 2-91 (163)
41 cd04151 Arl1 Arl1 subfamily. 99.6 2E-15 4.4E-20 99.4 7.6 81 22-102 1-81 (158)
42 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 2.8E-15 6.1E-20 100.7 8.4 88 20-107 2-93 (172)
43 cd04119 RJL RJL (RabJ-Like) su 99.6 2.7E-15 5.8E-20 98.6 8.2 86 22-107 2-92 (168)
44 cd04126 Rab20 Rab20 subfamily. 99.6 2.1E-15 4.5E-20 105.6 8.0 86 22-107 2-87 (220)
45 cd04131 Rnd Rnd subfamily. Th 99.6 2E-15 4.3E-20 102.3 7.6 89 21-109 2-95 (178)
46 cd04122 Rab14 Rab14 subfamily. 99.6 3.4E-15 7.5E-20 99.0 8.1 89 21-109 3-96 (166)
47 cd04133 Rop_like Rop subfamily 99.6 3.1E-15 6.6E-20 101.4 7.9 88 22-109 3-95 (176)
48 cd04176 Rap2 Rap2 subgroup. T 99.6 4.8E-15 1E-19 97.7 8.7 87 21-107 2-92 (163)
49 cd04156 ARLTS1 ARLTS1 subfamil 99.6 3.1E-15 6.8E-20 98.2 7.7 83 22-104 1-84 (160)
50 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 3.3E-15 7.1E-20 100.2 7.9 89 21-109 1-94 (170)
51 PTZ00369 Ras-like protein; Pro 99.6 2.8E-15 6E-20 101.9 7.1 90 18-107 3-96 (189)
52 cd00878 Arf_Arl Arf (ADP-ribos 99.6 4.9E-15 1.1E-19 97.2 8.0 83 22-104 1-83 (158)
53 cd04138 H_N_K_Ras_like H-Ras/N 99.6 6.2E-15 1.3E-19 96.3 8.4 85 21-105 2-90 (162)
54 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 4.3E-15 9.3E-20 104.2 8.1 86 21-106 2-91 (222)
55 cd01865 Rab3 Rab3 subfamily. 99.6 4.7E-15 1E-19 98.3 7.7 89 21-109 2-95 (165)
56 cd04175 Rap1 Rap1 subgroup. T 99.6 7.8E-15 1.7E-19 96.9 8.6 86 21-106 2-91 (164)
57 KOG0086 GTPase Rab4, small G p 99.6 2.3E-15 4.9E-20 100.0 5.5 89 21-109 10-103 (214)
58 KOG0098 GTPase Rab2, small G p 99.6 4.6E-15 9.9E-20 100.9 7.0 90 20-109 6-100 (216)
59 cd04127 Rab27A Rab27a subfamil 99.6 6.6E-15 1.4E-19 98.6 7.8 89 21-109 5-108 (180)
60 COG3842 PotA ABC-type spermidi 99.6 9E-16 2E-20 113.6 3.8 76 9-106 19-95 (352)
61 cd04116 Rab9 Rab9 subfamily. 99.6 8.4E-15 1.8E-19 97.3 8.0 88 21-108 6-98 (170)
62 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 8.7E-15 1.9E-19 103.3 8.1 87 19-105 12-102 (232)
63 cd04109 Rab28 Rab28 subfamily. 99.6 9.1E-15 2E-19 101.4 8.0 88 22-109 2-95 (215)
64 KOG0087 GTPase Rab11/YPT3, sma 99.6 2.7E-15 5.8E-20 103.5 5.1 89 21-109 15-108 (222)
65 cd01867 Rab8_Rab10_Rab13_like 99.6 1.2E-14 2.6E-19 96.6 7.9 88 21-108 4-96 (167)
66 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 1.5E-14 3.3E-19 95.7 8.2 87 21-107 3-94 (166)
67 cd04144 Ras2 Ras2 subfamily. 99.6 1.2E-14 2.6E-19 98.8 7.8 86 22-107 1-90 (190)
68 cd04134 Rho3 Rho3 subfamily. 99.6 1.1E-14 2.4E-19 99.0 7.6 85 22-106 2-90 (189)
69 cd04124 RabL2 RabL2 subfamily. 99.6 1.5E-14 3.2E-19 95.8 8.0 86 22-107 2-92 (161)
70 KOG0072 GTP-binding ADP-ribosy 99.6 2.1E-15 4.6E-20 99.0 3.8 85 19-103 17-101 (182)
71 cd04106 Rab23_lke Rab23-like s 99.6 1.2E-14 2.7E-19 95.4 7.4 87 22-108 2-95 (162)
72 COG3839 MalK ABC-type sugar tr 99.6 1.9E-15 4.2E-20 111.3 3.8 74 10-105 18-92 (338)
73 PLN03108 Rab family protein; P 99.6 1.6E-14 3.6E-19 99.9 8.2 88 21-108 7-99 (210)
74 cd01864 Rab19 Rab19 subfamily. 99.6 1.7E-14 3.8E-19 95.4 7.9 89 21-109 4-97 (165)
75 cd04110 Rab35 Rab35 subfamily. 99.6 1.7E-14 3.7E-19 98.9 8.1 88 20-107 6-98 (199)
76 cd04160 Arfrp1 Arfrp1 subfamil 99.6 1.7E-14 3.7E-19 95.3 7.6 80 22-101 1-87 (167)
77 cd04115 Rab33B_Rab33A Rab33B/R 99.6 2.1E-14 4.6E-19 95.7 8.0 89 21-109 3-97 (170)
78 cd00877 Ran Ran (Ras-related n 99.6 1.7E-14 3.8E-19 96.2 7.5 86 22-107 2-92 (166)
79 KOG0095 GTPase Rab30, small G 99.6 1.3E-14 2.9E-19 96.0 6.8 89 21-109 8-101 (213)
80 cd01868 Rab11_like Rab11-like. 99.6 2.3E-14 5E-19 94.6 8.0 89 21-109 4-97 (165)
81 cd01892 Miro2 Miro2 subfamily. 99.5 3.3E-14 7.2E-19 95.1 8.5 85 21-105 5-95 (169)
82 cd01871 Rac1_like Rac1-like su 99.5 3E-14 6.4E-19 95.9 7.9 86 21-106 2-91 (174)
83 cd01861 Rab6 Rab6 subfamily. 99.5 3.4E-14 7.4E-19 93.2 7.9 85 22-106 2-91 (161)
84 cd04125 RabA_like RabA-like su 99.5 3.1E-14 6.6E-19 96.4 7.9 86 22-107 2-92 (188)
85 PTZ00132 GTP-binding nuclear p 99.5 3.5E-14 7.6E-19 98.2 8.0 88 18-105 7-99 (215)
86 PLN03110 Rab GTPase; Provision 99.5 3.6E-14 7.7E-19 98.7 8.0 89 21-109 13-106 (216)
87 cd01860 Rab5_related Rab5-rela 99.5 4.6E-14 1E-18 92.8 8.1 87 21-107 2-93 (163)
88 PF00071 Ras: Ras family; Int 99.5 4.3E-14 9.3E-19 93.0 7.9 88 22-109 1-93 (162)
89 KOG0076 GTP-binding ADP-ribosy 99.5 1.7E-14 3.6E-19 97.1 6.0 90 16-105 13-110 (197)
90 smart00173 RAS Ras subfamily o 99.5 6.5E-14 1.4E-18 92.2 8.4 84 22-105 2-89 (164)
91 cd04118 Rab24 Rab24 subfamily. 99.5 4.6E-14 9.9E-19 95.7 7.8 84 22-105 2-91 (193)
92 cd04103 Centaurin_gamma Centau 99.5 6.8E-14 1.5E-18 93.0 8.5 83 22-109 2-87 (158)
93 smart00176 RAN Ran (Ras-relate 99.5 1.8E-14 4E-19 99.5 5.9 84 26-109 1-89 (200)
94 cd04112 Rab26 Rab26 subfamily. 99.5 6.9E-14 1.5E-18 95.2 8.0 85 22-106 2-92 (191)
95 cd04111 Rab39 Rab39 subfamily. 99.5 6.4E-14 1.4E-18 97.1 7.9 89 21-109 3-97 (211)
96 smart00175 RAB Rab subfamily o 99.5 8E-14 1.7E-18 91.5 7.9 85 22-106 2-91 (164)
97 PLN03118 Rab family protein; P 99.5 8.5E-14 1.8E-18 96.1 8.3 86 20-105 14-103 (211)
98 cd04140 ARHI_like ARHI subfami 99.5 8.8E-14 1.9E-18 92.2 8.1 85 21-105 2-90 (165)
99 cd04177 RSR1 RSR1 subgroup. R 99.5 1.1E-13 2.3E-18 92.1 8.4 85 21-105 2-90 (168)
100 cd04145 M_R_Ras_like M-Ras/R-R 99.5 1.3E-13 2.8E-18 90.6 8.7 87 20-106 2-92 (164)
101 COG1126 GlnQ ABC-type polar am 99.5 1.1E-14 2.3E-19 101.4 3.6 79 9-106 16-95 (240)
102 cd04143 Rhes_like Rhes_like su 99.5 8E-14 1.7E-18 99.1 8.1 85 22-106 2-90 (247)
103 cd04113 Rab4 Rab4 subfamily. 99.5 1E-13 2.2E-18 91.2 7.9 85 22-106 2-91 (161)
104 cd04132 Rho4_like Rho4-like su 99.5 7.2E-14 1.6E-18 94.2 7.4 84 22-105 2-90 (187)
105 cd01866 Rab2 Rab2 subfamily. 99.5 1.2E-13 2.6E-18 91.9 8.2 88 21-108 5-97 (168)
106 cd01862 Rab7 Rab7 subfamily. 99.5 1.3E-13 2.8E-18 91.2 8.1 84 22-105 2-90 (172)
107 cd04101 RabL4 RabL4 (Rab-like4 99.5 1E-13 2.2E-18 91.3 7.4 85 22-106 2-94 (164)
108 cd01870 RhoA_like RhoA-like su 99.5 2E-13 4.4E-18 90.8 8.9 84 21-104 2-89 (175)
109 KOG0079 GTP-binding protein H- 99.5 3.5E-14 7.5E-19 93.8 4.8 88 22-109 10-102 (198)
110 COG1120 FepC ABC-type cobalami 99.5 9.4E-15 2E-19 104.3 2.1 61 10-80 17-78 (258)
111 COG1100 GTPase SAR1 and relate 99.5 7.3E-14 1.6E-18 96.2 6.1 85 21-105 6-96 (219)
112 KOG0091 GTPase Rab39, small G 99.5 3.7E-14 8.1E-19 95.0 4.3 91 19-109 7-103 (213)
113 cd00154 Rab Rab family. Rab G 99.5 1.7E-13 3.8E-18 88.5 7.1 84 22-105 2-90 (159)
114 cd04114 Rab30 Rab30 subfamily. 99.5 2.8E-13 6E-18 89.6 7.9 84 21-104 8-96 (169)
115 cd04130 Wrch_1 Wrch-1 subfamil 99.5 2.1E-13 4.5E-18 91.2 7.4 84 22-105 2-89 (173)
116 cd01863 Rab18 Rab18 subfamily. 99.5 3.7E-13 8E-18 88.4 8.2 84 22-105 2-90 (161)
117 smart00174 RHO Rho (Ras homolo 99.5 2.1E-13 4.6E-18 90.7 7.0 83 23-105 1-87 (174)
118 cd04147 Ras_dva Ras-dva subfam 99.5 3.2E-13 7E-18 92.4 7.6 84 22-105 1-88 (198)
119 COG1136 SalX ABC-type antimicr 99.4 7.4E-14 1.6E-18 98.0 4.3 81 9-105 19-100 (226)
120 KOG0394 Ras-related GTPase [Ge 99.4 1.5E-13 3.3E-18 93.4 5.2 89 21-109 10-103 (210)
121 cd04137 RheB Rheb (Ras Homolog 99.4 6.2E-13 1.3E-17 89.1 8.0 85 21-105 2-90 (180)
122 cd04123 Rab21 Rab21 subfamily. 99.4 7.1E-13 1.5E-17 86.5 7.9 84 22-105 2-90 (162)
123 cd04135 Tc10 TC10 subfamily. 99.4 1.4E-12 3E-17 86.7 8.8 84 22-105 2-89 (174)
124 cd04146 RERG_RasL11_like RERG/ 99.4 1E-12 2.2E-17 86.9 7.7 86 22-107 1-91 (165)
125 PF08477 Miro: Miro-like prote 99.4 2.7E-13 5.9E-18 85.3 4.4 84 22-105 1-91 (119)
126 KOG0097 GTPase Rab14, small G 99.4 7E-13 1.5E-17 87.3 6.2 88 22-109 13-105 (215)
127 cd04105 SR_beta Signal recogni 99.4 1.2E-12 2.5E-17 90.4 7.4 79 22-100 2-85 (203)
128 COG1124 DppF ABC-type dipeptid 99.4 2.4E-13 5.1E-18 95.9 3.9 79 9-104 21-100 (252)
129 COG1116 TauB ABC-type nitrate/ 99.4 2.7E-13 5.8E-18 95.9 4.1 52 8-67 16-68 (248)
130 cd04129 Rho2 Rho2 subfamily. 99.4 1.8E-12 3.9E-17 87.9 7.9 86 21-106 2-91 (187)
131 COG4559 ABC-type hemin transpo 99.4 8.9E-14 1.9E-18 96.9 1.1 55 9-71 15-70 (259)
132 cd00876 Ras Ras family. The R 99.4 2E-12 4.3E-17 84.3 7.3 84 22-105 1-88 (160)
133 COG1118 CysA ABC-type sulfate/ 99.4 5.7E-13 1.2E-17 96.9 5.2 51 9-67 16-67 (345)
134 cd01893 Miro1 Miro1 subfamily. 99.4 1.9E-12 4.2E-17 85.9 7.1 84 22-105 2-88 (166)
135 COG0396 sufC Cysteine desulfur 99.4 4.5E-13 9.7E-18 94.0 3.7 63 9-79 18-81 (251)
136 cd04139 RalA_RalB RalA/RalB su 99.4 3.7E-12 8.1E-17 83.4 7.8 83 22-104 2-88 (164)
137 COG0411 LivG ABC-type branched 99.3 5.4E-14 1.2E-18 99.1 -1.7 51 9-67 18-69 (250)
138 COG1125 OpuBA ABC-type proline 99.3 3.1E-13 6.8E-18 96.3 2.0 72 9-92 15-87 (309)
139 TIGR01166 cbiO cobalt transpor 99.3 9.2E-13 2E-17 89.7 4.2 51 9-67 6-57 (190)
140 COG4555 NatA ABC-type Na+ tran 99.3 7.5E-13 1.6E-17 91.7 3.7 53 7-67 14-67 (245)
141 COG1131 CcmA ABC-type multidru 99.3 7.6E-13 1.6E-17 96.2 3.8 51 9-67 19-70 (293)
142 COG1129 MglA ABC-type sugar tr 99.3 1.1E-12 2.3E-17 100.8 4.7 54 9-70 22-76 (500)
143 cd01898 Obg Obg subfamily. Th 99.3 6.5E-12 1.4E-16 83.0 7.6 79 22-100 2-91 (170)
144 COG0410 LivF ABC-type branched 99.3 6E-13 1.3E-17 93.2 2.7 51 9-67 17-68 (237)
145 TIGR00231 small_GTP small GTP- 99.3 1.7E-11 3.8E-16 78.5 9.3 80 21-100 2-86 (161)
146 cd04142 RRP22 RRP22 subfamily. 99.3 8.9E-12 1.9E-16 85.7 8.1 85 22-106 2-99 (198)
147 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.3 1.1E-12 2.5E-17 90.8 3.5 51 9-67 18-69 (218)
148 cd03259 ABC_Carb_Solutes_like 99.3 1.7E-12 3.6E-17 89.8 4.2 50 10-67 15-65 (213)
149 COG1135 AbcC ABC-type metal io 99.3 5.4E-13 1.2E-17 97.0 1.8 57 9-73 20-77 (339)
150 cd03225 ABC_cobalt_CbiO_domain 99.3 1.4E-12 3.1E-17 89.9 3.9 50 10-67 16-66 (211)
151 cd03261 ABC_Org_Solvent_Resist 99.3 1.3E-12 2.9E-17 91.6 3.7 50 10-67 15-65 (235)
152 cd04148 RGK RGK subfamily. Th 99.3 1.2E-11 2.5E-16 86.4 8.4 83 22-106 2-91 (221)
153 cd03226 ABC_cobalt_CbiO_domain 99.3 1.5E-12 3.2E-17 89.6 3.7 50 9-66 14-64 (205)
154 COG3638 ABC-type phosphate/pho 99.3 1.7E-12 3.8E-17 91.4 4.0 51 9-67 18-69 (258)
155 cd00157 Rho Rho (Ras homology) 99.3 2.2E-11 4.7E-16 80.4 9.0 83 22-104 2-88 (171)
156 TIGR02673 FtsE cell division A 99.3 1.9E-12 4.2E-17 89.4 4.1 51 9-67 16-67 (214)
157 cd03263 ABC_subfamily_A The AB 99.3 2.1E-12 4.5E-17 89.6 3.9 51 9-67 16-67 (220)
158 TIGR00960 3a0501s02 Type II (G 99.3 1.7E-12 3.6E-17 89.9 3.4 50 10-67 18-68 (216)
159 COG1134 TagH ABC-type polysacc 99.3 1.5E-12 3.3E-17 91.9 3.0 55 9-71 41-96 (249)
160 COG3845 ABC-type uncharacteriz 99.3 3.4E-12 7.3E-17 97.3 5.0 53 10-70 19-72 (501)
161 COG1121 ZnuC ABC-type Mn/Zn tr 99.3 1.6E-12 3.5E-17 92.6 3.1 49 10-66 19-68 (254)
162 cd04171 SelB SelB subfamily. 99.3 2.2E-11 4.7E-16 79.7 8.3 77 23-99 3-86 (164)
163 cd03257 ABC_NikE_OppD_transpor 99.3 2.5E-12 5.3E-17 89.5 3.9 51 9-67 19-70 (228)
164 cd03218 ABC_YhbG The ABC trans 99.3 2.7E-12 5.9E-17 89.7 4.1 50 10-67 15-65 (232)
165 cd03265 ABC_DrrA DrrA is the A 99.3 2.6E-12 5.6E-17 89.3 4.0 50 10-67 15-65 (220)
166 TIGR01188 drrA daunorubicin re 99.3 2.3E-12 4.9E-17 93.8 3.8 51 9-67 7-58 (302)
167 TIGR02315 ABC_phnC phosphonate 99.3 2.7E-12 5.9E-17 90.2 3.9 51 9-67 16-67 (243)
168 KOG0093 GTPase Rab3, small G p 99.3 9.4E-12 2E-16 82.3 6.1 88 22-109 23-115 (193)
169 PRK13537 nodulation ABC transp 99.3 2.5E-12 5.5E-17 93.8 3.8 50 10-67 22-72 (306)
170 PRK11629 lolD lipoprotein tran 99.3 2.5E-12 5.5E-17 90.1 3.6 50 10-67 24-74 (233)
171 COG1127 Ttg2A ABC-type transpo 99.3 6.4E-13 1.4E-17 93.8 0.6 55 10-74 23-78 (263)
172 cd03293 ABC_NrtD_SsuB_transpor 99.3 2.6E-12 5.6E-17 89.3 3.6 49 10-66 19-68 (220)
173 cd03224 ABC_TM1139_LivF_branch 99.3 2.8E-12 6.2E-17 89.0 3.8 50 10-67 15-65 (222)
174 PF00005 ABC_tran: ABC transpo 99.3 1.5E-12 3.3E-17 83.9 2.2 49 11-67 1-50 (137)
175 cd03262 ABC_HisP_GlnQ_permease 99.3 2.8E-12 6E-17 88.5 3.6 49 10-66 15-64 (213)
176 cd03219 ABC_Mj1267_LivG_branch 99.3 2.9E-12 6.3E-17 89.7 3.8 50 10-67 15-65 (236)
177 cd03301 ABC_MalK_N The N-termi 99.3 3.1E-12 6.8E-17 88.3 3.9 51 9-67 14-65 (213)
178 TIGR03608 L_ocin_972_ABC putat 99.3 3.1E-12 6.7E-17 87.9 3.8 50 10-67 13-63 (206)
179 cd03292 ABC_FtsE_transporter F 99.3 3.1E-12 6.7E-17 88.3 3.7 51 9-67 15-66 (214)
180 cd03258 ABC_MetN_methionine_tr 99.3 3.1E-12 6.7E-17 89.5 3.7 51 9-67 19-70 (233)
181 COG2884 FtsE Predicted ATPase 99.3 1.1E-11 2.3E-16 85.2 6.2 51 9-67 16-67 (223)
182 cd03296 ABC_CysA_sulfate_impor 99.3 3.2E-12 6.9E-17 89.9 3.7 50 10-67 17-67 (239)
183 PRK11650 ugpC glycerol-3-phosp 99.3 2.9E-12 6.3E-17 95.4 3.7 50 10-67 19-69 (356)
184 cd03235 ABC_Metallic_Cations A 99.3 2.2E-12 4.8E-17 89.2 2.8 48 10-65 14-62 (213)
185 cd03269 ABC_putative_ATPase Th 99.3 2.3E-12 5.1E-17 88.8 2.8 49 10-66 15-64 (210)
186 cd03229 ABC_Class3 This class 99.3 3.6E-12 7.8E-17 86.2 3.6 50 10-67 15-65 (178)
187 TIGR02211 LolD_lipo_ex lipopro 99.3 3.2E-12 6.9E-17 88.7 3.4 50 10-67 20-70 (221)
188 cd03266 ABC_NatA_sodium_export 99.3 4E-12 8.7E-17 88.1 3.9 51 9-67 19-70 (218)
189 cd03256 ABC_PhnC_transporter A 99.3 3.3E-12 7.2E-17 89.6 3.5 50 10-67 16-66 (241)
190 cd01887 IF2_eIF5B IF2/eIF5B (i 99.3 3.3E-11 7.3E-16 79.3 8.1 78 22-99 2-85 (168)
191 TIGR03410 urea_trans_UrtE urea 99.3 3.5E-12 7.7E-17 89.1 3.5 50 10-67 15-65 (230)
192 PRK10908 cell division protein 99.3 4.2E-12 9.1E-17 88.3 3.9 50 10-67 17-67 (222)
193 TIGR03864 PQQ_ABC_ATP ABC tran 99.3 4E-12 8.7E-17 89.2 3.8 50 10-67 16-66 (236)
194 cd03260 ABC_PstB_phosphate_tra 99.3 3.4E-12 7.5E-17 89.0 3.4 50 10-67 15-70 (227)
195 TIGR03265 PhnT2 putative 2-ami 99.3 3.3E-12 7.2E-17 94.9 3.4 50 10-67 19-69 (353)
196 PRK10584 putative ABC transpor 99.3 3.8E-12 8.2E-17 88.8 3.5 50 10-67 25-75 (228)
197 PRK13536 nodulation factor exp 99.3 3.5E-12 7.6E-17 94.4 3.5 50 10-67 56-106 (340)
198 PRK11248 tauB taurine transpor 99.3 3.8E-12 8.2E-17 90.6 3.4 49 10-66 16-65 (255)
199 TIGR01288 nodI ATP-binding ABC 99.3 4.6E-12 1E-16 92.2 3.9 49 10-66 19-68 (303)
200 PRK13538 cytochrome c biogenes 99.3 4.7E-12 1E-16 87.2 3.7 50 10-67 16-66 (204)
201 PRK13641 cbiO cobalt transport 99.3 4.4E-12 9.5E-17 91.7 3.6 50 10-67 22-72 (287)
202 cd03215 ABC_Carb_Monos_II This 99.3 5.1E-12 1.1E-16 85.7 3.7 50 10-67 15-65 (182)
203 PRK11432 fbpC ferric transport 99.2 4.6E-12 9.9E-17 94.2 3.7 50 10-67 21-71 (351)
204 PRK09493 glnQ glutamine ABC tr 99.2 5.3E-12 1.1E-16 88.8 3.8 50 10-67 16-66 (240)
205 TIGR01189 ccmA heme ABC export 99.2 5.5E-12 1.2E-16 86.4 3.8 50 10-67 15-65 (198)
206 PRK13646 cbiO cobalt transport 99.2 4.5E-12 9.7E-17 91.6 3.5 50 10-67 22-72 (286)
207 PRK13649 cbiO cobalt transport 99.2 5.5E-12 1.2E-16 90.7 3.9 50 10-67 22-72 (280)
208 PRK13638 cbiO cobalt transport 99.2 5.7E-12 1.2E-16 90.3 3.9 51 9-67 15-66 (271)
209 cd03268 ABC_BcrA_bacitracin_re 99.2 4.3E-12 9.3E-17 87.4 3.1 50 10-67 15-65 (208)
210 TIGR02314 ABC_MetN D-methionin 99.2 4.5E-12 9.8E-17 94.0 3.3 51 9-67 19-70 (343)
211 cd03264 ABC_drug_resistance_li 99.2 4.6E-12 1E-16 87.4 3.2 50 10-67 15-64 (211)
212 cd01873 RhoBTB RhoBTB subfamil 99.2 3.4E-11 7.3E-16 82.8 7.4 85 21-107 3-107 (195)
213 PRK11264 putative amino-acid A 99.2 7.2E-12 1.6E-16 88.5 4.2 50 10-67 18-68 (250)
214 TIGR02769 nickel_nikE nickel i 99.2 6.1E-12 1.3E-16 89.8 3.9 50 10-67 26-76 (265)
215 PRK10895 lipopolysaccharide AB 99.2 5.3E-12 1.1E-16 88.8 3.5 50 10-67 18-68 (241)
216 PRK14250 phosphate ABC transpo 99.2 5.6E-12 1.2E-16 88.9 3.6 50 10-67 18-68 (241)
217 KOG0088 GTPase Rab21, small G 99.2 2.2E-12 4.7E-17 86.2 1.4 90 20-109 13-107 (218)
218 TIGR02770 nickel_nikD nickel i 99.2 6.9E-12 1.5E-16 87.8 3.9 50 10-67 1-55 (230)
219 cd03295 ABC_OpuCA_Osmoprotecti 99.2 5.4E-12 1.2E-16 88.9 3.4 50 10-67 16-66 (242)
220 PRK13637 cbiO cobalt transport 99.2 5.1E-12 1.1E-16 91.4 3.3 51 9-67 21-72 (287)
221 cd03228 ABCC_MRP_Like The MRP 99.2 7.6E-12 1.7E-16 84.1 3.9 51 9-67 16-67 (171)
222 cd03294 ABC_Pro_Gly_Bertaine T 99.2 6.4E-12 1.4E-16 90.0 3.7 50 10-67 39-89 (269)
223 PRK10247 putative ABC transpor 99.2 6E-12 1.3E-16 87.9 3.5 50 10-67 22-72 (225)
224 PRK15112 antimicrobial peptide 99.2 6.6E-12 1.4E-16 89.8 3.7 51 9-67 27-78 (267)
225 cd03216 ABC_Carb_Monos_I This 99.2 6.3E-12 1.4E-16 84.1 3.4 50 10-67 15-65 (163)
226 cd03254 ABCC_Glucan_exporter_l 99.2 7.4E-12 1.6E-16 87.3 3.8 50 10-67 18-68 (229)
227 TIGR03522 GldA_ABC_ATP gliding 99.2 6.3E-12 1.4E-16 91.5 3.6 50 10-67 17-67 (301)
228 PRK09452 potA putrescine/sperm 99.2 6.5E-12 1.4E-16 94.1 3.7 50 10-67 29-79 (375)
229 cd03230 ABC_DR_subfamily_A Thi 99.2 8E-12 1.7E-16 84.1 3.8 50 10-67 15-65 (173)
230 TIGR03411 urea_trans_UrtD urea 99.2 6.1E-12 1.3E-16 88.5 3.4 50 10-67 17-67 (242)
231 COG4619 ABC-type uncharacteriz 99.2 7.8E-12 1.7E-16 84.7 3.7 72 9-92 17-89 (223)
232 PRK13540 cytochrome c biogenes 99.2 5.4E-12 1.2E-16 86.7 3.0 50 10-67 16-66 (200)
233 TIGR01184 ntrCD nitrate transp 99.2 7.8E-12 1.7E-16 87.7 3.8 49 11-67 1-50 (230)
234 cd03244 ABCC_MRP_domain2 Domai 99.2 8.4E-12 1.8E-16 86.6 3.9 50 10-67 19-69 (221)
235 PRK13644 cbiO cobalt transport 99.2 6.7E-12 1.4E-16 90.2 3.5 50 10-67 17-67 (274)
236 cd03245 ABCC_bacteriocin_expor 99.2 7.6E-12 1.6E-16 86.8 3.7 50 10-67 19-69 (220)
237 KOG0083 GTPase Rab26/Rab37, sm 99.2 1.1E-12 2.3E-17 85.6 -0.5 85 25-109 2-92 (192)
238 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.2 7.3E-12 1.6E-16 87.9 3.6 50 10-67 18-68 (238)
239 cd03267 ABC_NatA_like Similar 99.2 8.7E-12 1.9E-16 87.7 3.9 50 9-66 35-85 (236)
240 TIGR03005 ectoine_ehuA ectoine 99.2 8E-12 1.7E-16 88.5 3.8 50 10-67 15-65 (252)
241 PRK15056 manganese/iron transp 99.2 6.2E-12 1.3E-16 90.2 3.2 49 10-66 22-71 (272)
242 PRK11124 artP arginine transpo 99.2 8.7E-12 1.9E-16 87.8 3.9 50 9-66 16-66 (242)
243 cd03214 ABC_Iron-Siderophores_ 99.2 7.3E-12 1.6E-16 84.8 3.4 50 10-67 14-64 (180)
244 PRK11300 livG leucine/isoleuci 99.2 7.8E-12 1.7E-16 88.5 3.6 50 10-67 20-70 (255)
245 PRK13647 cbiO cobalt transport 99.2 7.2E-12 1.6E-16 90.0 3.5 50 10-67 20-70 (274)
246 TIGR00972 3a0107s01c2 phosphat 99.2 1E-11 2.2E-16 87.7 4.1 50 10-67 16-71 (247)
247 PRK13652 cbiO cobalt transport 99.2 7.3E-12 1.6E-16 90.1 3.5 50 10-67 19-69 (277)
248 PRK13645 cbiO cobalt transport 99.2 6.9E-12 1.5E-16 90.6 3.3 49 10-66 26-75 (289)
249 PRK11614 livF leucine/isoleuci 99.2 7.6E-12 1.7E-16 87.8 3.5 50 10-67 20-70 (237)
250 PRK11153 metN DL-methionine tr 99.2 6.6E-12 1.4E-16 92.9 3.3 51 9-67 19-70 (343)
251 PRK11831 putative ABC transpor 99.2 6.5E-12 1.4E-16 90.0 3.2 50 10-67 22-72 (269)
252 PRK13648 cbiO cobalt transport 99.2 9.3E-12 2E-16 89.1 3.9 50 10-67 24-74 (269)
253 PRK13539 cytochrome c biogenes 99.2 7.9E-12 1.7E-16 86.3 3.4 49 10-66 17-66 (207)
254 PRK04213 GTP-binding protein; 99.2 4.9E-11 1.1E-15 81.4 7.2 76 20-97 9-100 (201)
255 cd03231 ABC_CcmA_heme_exporter 99.2 1.1E-11 2.3E-16 85.3 3.9 50 10-67 15-65 (201)
256 COG1123 ATPase components of v 99.2 8.3E-12 1.8E-16 96.6 3.6 82 8-105 304-386 (539)
257 cd03246 ABCC_Protease_Secretio 99.2 9.9E-12 2.1E-16 83.7 3.6 50 10-67 17-67 (173)
258 cd03247 ABCC_cytochrome_bd The 99.2 7.4E-12 1.6E-16 84.6 3.0 49 10-66 17-66 (178)
259 PRK13635 cbiO cobalt transport 99.2 8.5E-12 1.8E-16 89.9 3.5 50 10-67 22-72 (279)
260 TIGR01978 sufC FeS assembly AT 99.2 1E-11 2.2E-16 87.2 3.8 50 10-67 15-67 (243)
261 PRK10253 iron-enterobactin tra 99.2 9.2E-12 2E-16 88.9 3.6 50 10-67 22-72 (265)
262 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.2 9.5E-12 2.1E-16 87.0 3.6 50 10-67 37-87 (224)
263 PRK13634 cbiO cobalt transport 99.2 8.2E-12 1.8E-16 90.4 3.3 51 9-67 21-72 (290)
264 PRK11247 ssuB aliphatic sulfon 99.2 8.8E-12 1.9E-16 89.0 3.4 50 9-66 26-76 (257)
265 cd03251 ABCC_MsbA MsbA is an e 99.2 9.6E-12 2.1E-16 87.0 3.5 51 9-67 16-67 (234)
266 PRK13543 cytochrome c biogenes 99.2 1.1E-11 2.3E-16 86.1 3.7 50 10-67 26-76 (214)
267 PRK13548 hmuV hemin importer A 99.2 9.6E-12 2.1E-16 88.6 3.5 50 10-67 17-67 (258)
268 cd03233 ABC_PDR_domain1 The pl 99.2 1E-11 2.2E-16 85.6 3.4 51 9-67 21-75 (202)
269 PRK10575 iron-hydroxamate tran 99.2 8.5E-12 1.8E-16 89.1 3.1 50 10-67 26-76 (265)
270 PRK15177 Vi polysaccharide exp 99.2 8.3E-12 1.8E-16 86.8 3.0 48 10-65 2-51 (213)
271 PRK13632 cbiO cobalt transport 99.2 1.1E-11 2.4E-16 88.9 3.7 51 9-67 23-74 (271)
272 cd03252 ABCC_Hemolysin The ABC 99.2 9.3E-12 2E-16 87.3 3.3 50 10-67 17-67 (237)
273 cd03213 ABCG_EPDR ABCG transpo 99.2 1.5E-11 3.2E-16 84.3 4.1 51 9-67 23-76 (194)
274 TIGR03873 F420-0_ABC_ATP propo 99.2 1E-11 2.3E-16 88.1 3.5 50 10-67 16-66 (256)
275 cd03234 ABCG_White The White s 99.2 1.8E-11 3.9E-16 85.4 4.5 50 9-66 21-74 (226)
276 PRK13639 cbiO cobalt transport 99.2 9.9E-12 2.2E-16 89.3 3.3 50 10-67 17-67 (275)
277 PRK11607 potG putrescine trans 99.2 1.1E-11 2.4E-16 92.9 3.6 50 10-67 34-84 (377)
278 PRK13650 cbiO cobalt transport 99.2 9.9E-12 2.1E-16 89.5 3.3 50 10-67 22-72 (279)
279 PRK13643 cbiO cobalt transport 99.2 1.1E-11 2.4E-16 89.7 3.5 50 10-67 21-71 (288)
280 TIGR01186 proV glycine betaine 99.2 9.4E-12 2E-16 92.9 3.2 50 10-67 8-58 (363)
281 TIGR03740 galliderm_ABC gallid 99.2 1.3E-11 2.8E-16 85.9 3.7 49 10-66 15-64 (223)
282 PRK13633 cobalt transporter AT 99.2 1.2E-11 2.6E-16 89.0 3.6 50 10-67 25-75 (280)
283 PRK13636 cbiO cobalt transport 99.2 1.3E-11 2.7E-16 89.1 3.6 49 10-66 21-70 (283)
284 PRK14267 phosphate ABC transpo 99.2 1.4E-11 3E-16 87.2 3.8 51 9-67 18-74 (253)
285 PRK11000 maltose/maltodextrin 99.2 1.1E-11 2.4E-16 92.6 3.3 50 10-67 18-68 (369)
286 cd03253 ABCC_ATM1_transporter 99.2 1.2E-11 2.6E-16 86.6 3.3 50 10-67 16-66 (236)
287 cd01891 TypA_BipA TypA (tyrosi 99.2 2.5E-10 5.4E-15 77.8 9.6 78 22-99 4-100 (194)
288 cd03290 ABCC_SUR1_N The SUR do 99.2 1.2E-11 2.6E-16 85.8 3.2 51 9-67 15-66 (218)
289 PRK10851 sulfate/thiosulfate t 99.2 9.8E-12 2.1E-16 92.5 2.9 50 10-67 17-67 (353)
290 PRK11231 fecE iron-dicitrate t 99.2 1.3E-11 2.8E-16 87.6 3.4 50 10-67 17-67 (255)
291 PRK14242 phosphate transporter 99.2 1.5E-11 3.3E-16 87.0 3.8 55 10-67 21-76 (253)
292 COG4604 CeuD ABC-type enteroch 99.2 1.1E-11 2.3E-16 85.9 2.7 53 10-70 16-69 (252)
293 cd03369 ABCC_NFT1 Domain 2 of 99.2 1.7E-11 3.8E-16 84.4 3.8 51 9-67 22-73 (207)
294 TIGR02982 heterocyst_DevA ABC 99.2 1.6E-11 3.6E-16 85.3 3.6 50 10-67 20-70 (220)
295 cd03298 ABC_ThiQ_thiamine_tran 99.2 2.4E-11 5.2E-16 83.9 4.4 47 13-67 16-63 (211)
296 COG4181 Predicted ABC-type tra 99.2 1.2E-11 2.7E-16 84.0 2.8 80 9-104 24-104 (228)
297 PRK11701 phnK phosphonate C-P 99.2 1.3E-11 2.7E-16 87.8 3.1 48 10-65 21-69 (258)
298 cd03250 ABCC_MRP_domain1 Domai 99.2 1.4E-11 3E-16 84.7 3.2 47 9-63 19-66 (204)
299 COG4586 ABC-type uncharacteriz 99.2 1.6E-11 3.5E-16 88.3 3.6 51 6-64 35-86 (325)
300 COG1117 PstB ABC-type phosphat 99.2 3.1E-11 6.8E-16 84.3 4.8 59 8-69 20-79 (253)
301 cd03248 ABCC_TAP TAP, the Tran 99.2 1.4E-11 3.1E-16 85.8 3.2 50 9-66 28-78 (226)
302 cd03222 ABC_RNaseL_inhibitor T 99.2 6E-11 1.3E-15 80.7 6.0 74 11-93 16-95 (177)
303 PRK10619 histidine/lysine/argi 99.2 1.9E-11 4.1E-16 86.9 3.7 50 10-67 20-70 (257)
304 PRK09536 btuD corrinoid ABC tr 99.2 1.3E-11 2.9E-16 93.2 3.1 50 10-67 18-68 (402)
305 PRK14247 phosphate ABC transpo 99.2 2.2E-11 4.8E-16 86.1 4.0 50 10-67 18-73 (250)
306 PRK14259 phosphate ABC transpo 99.2 2E-11 4.3E-16 87.5 3.8 50 10-67 28-83 (269)
307 PRK13631 cbiO cobalt transport 99.2 1.8E-11 3.8E-16 90.0 3.5 51 9-67 40-91 (320)
308 TIGR02323 CP_lyasePhnK phospho 99.2 1.6E-11 3.5E-16 86.9 3.2 48 10-65 18-66 (253)
309 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.2 1.5E-11 3.2E-16 80.8 2.8 76 10-93 15-94 (144)
310 cd03300 ABC_PotA_N PotA is an 99.2 2.6E-11 5.6E-16 85.0 4.1 50 10-67 15-65 (232)
311 PRK13547 hmuV hemin importer A 99.2 2.1E-11 4.6E-16 87.7 3.7 50 10-67 16-74 (272)
312 cd00882 Ras_like_GTPase Ras-li 99.2 5.4E-11 1.2E-15 75.2 5.2 78 25-103 1-84 (157)
313 COG4175 ProV ABC-type proline/ 99.2 8.2E-12 1.8E-16 91.4 1.5 49 11-67 44-93 (386)
314 COG4167 SapF ABC-type antimicr 99.2 3.1E-11 6.7E-16 83.0 4.2 58 6-71 24-82 (267)
315 PRK10744 pstB phosphate transp 99.2 2.2E-11 4.8E-16 86.7 3.6 50 10-67 28-83 (260)
316 PRK10418 nikD nickel transport 99.2 2.2E-11 4.8E-16 86.4 3.5 51 9-67 17-72 (254)
317 cd01878 HflX HflX subfamily. 99.2 1E-10 2.3E-15 80.0 6.8 81 21-102 42-135 (204)
318 PRK14273 phosphate ABC transpo 99.2 3E-11 6.6E-16 85.6 4.2 50 10-67 22-77 (254)
319 TIGR00968 3a0106s01 sulfate AB 99.2 2.5E-11 5.3E-16 85.4 3.7 50 10-67 15-65 (237)
320 cd01896 DRG The developmentall 99.2 4.2E-10 9.2E-15 79.3 9.9 80 21-100 1-90 (233)
321 PRK14235 phosphate transporter 99.2 1.9E-11 4.2E-16 87.4 3.0 50 10-67 34-89 (267)
322 PRK10419 nikE nickel transport 99.2 2.3E-11 5E-16 87.1 3.4 51 9-67 26-77 (268)
323 PRK10762 D-ribose transporter 99.2 2.4E-11 5.3E-16 93.6 3.7 50 10-67 19-69 (501)
324 PRK14241 phosphate transporter 99.2 2.9E-11 6.2E-16 86.0 3.8 49 10-66 19-73 (258)
325 COG4525 TauB ABC-type taurine 99.2 4.9E-11 1.1E-15 82.6 4.8 50 10-67 20-70 (259)
326 cd03223 ABCD_peroxisomal_ALDP 99.2 2.3E-11 5E-16 81.5 3.1 46 10-63 16-62 (166)
327 TIGR01277 thiQ thiamine ABC tr 99.2 3.3E-11 7.1E-16 83.4 3.9 50 10-67 13-63 (213)
328 PRK14268 phosphate ABC transpo 99.2 3E-11 6.5E-16 85.9 3.8 50 10-67 27-82 (258)
329 PRK10070 glycine betaine trans 99.2 1.7E-11 3.8E-16 92.5 2.7 50 10-67 43-93 (400)
330 PRK09700 D-allose transporter 99.2 2.4E-11 5.1E-16 93.8 3.5 50 10-67 20-70 (510)
331 PRK13642 cbiO cobalt transport 99.1 2.5E-11 5.4E-16 87.3 3.3 50 10-67 22-72 (277)
332 PRK14248 phosphate ABC transpo 99.1 3.1E-11 6.6E-16 86.3 3.7 55 10-67 36-91 (268)
333 cd03217 ABC_FeS_Assembly ABC-t 99.1 3.6E-11 7.8E-16 82.7 3.9 52 10-67 15-67 (200)
334 PRK15079 oligopeptide ABC tran 99.1 2.5E-11 5.4E-16 89.6 3.2 51 9-67 35-86 (331)
335 PRK13651 cobalt transporter AT 99.1 2.6E-11 5.6E-16 88.6 3.3 50 9-66 21-71 (305)
336 PRK14262 phosphate ABC transpo 99.1 3.4E-11 7.4E-16 85.1 3.8 50 10-67 18-73 (250)
337 TIGR02324 CP_lyasePhnL phospho 99.1 2.3E-11 5E-16 84.6 2.9 45 10-62 23-68 (224)
338 COG4152 ABC-type uncharacteriz 99.1 1.5E-11 3.3E-16 87.4 1.9 51 9-67 16-67 (300)
339 PRK11308 dppF dipeptide transp 99.1 2.8E-11 6E-16 89.2 3.4 51 9-67 29-80 (327)
340 cd03232 ABC_PDR_domain2 The pl 99.1 3.1E-11 6.7E-16 82.5 3.4 51 10-66 22-73 (192)
341 cd00881 GTP_translation_factor 99.1 4.8E-10 1E-14 74.8 9.0 78 22-99 1-97 (189)
342 PRK14238 phosphate transporter 99.1 3.4E-11 7.4E-16 86.4 3.5 51 9-67 38-94 (271)
343 PRK14240 phosphate transporter 99.1 3.9E-11 8.5E-16 84.8 3.8 56 9-67 17-73 (250)
344 PRK14237 phosphate transporter 99.1 3.6E-11 7.8E-16 86.0 3.6 50 10-67 35-90 (267)
345 cd03299 ABC_ModC_like Archeal 99.1 3.9E-11 8.5E-16 84.3 3.7 50 10-67 14-64 (235)
346 TIGR03258 PhnT 2-aminoethylpho 99.1 3.2E-11 6.8E-16 90.0 3.4 50 10-67 20-72 (362)
347 PRK14269 phosphate ABC transpo 99.1 3.9E-11 8.4E-16 84.8 3.7 50 10-67 17-70 (246)
348 cd01881 Obg_like The Obg-like 99.1 1.2E-10 2.6E-15 77.1 5.8 76 25-100 1-87 (176)
349 PRK09700 D-allose transporter 99.1 3.8E-11 8.2E-16 92.7 3.9 49 10-66 278-327 (510)
350 PRK14251 phosphate ABC transpo 99.1 4.3E-11 9.2E-16 84.7 3.8 51 9-67 18-74 (251)
351 cd03288 ABCC_SUR2 The SUR doma 99.1 3.4E-11 7.3E-16 85.7 3.3 50 10-67 36-86 (257)
352 PRK09544 znuC high-affinity zi 99.1 3.2E-11 6.9E-16 85.8 3.1 46 10-63 19-65 (251)
353 PRK15093 antimicrobial peptide 99.1 3.7E-11 8E-16 88.5 3.6 55 9-67 21-76 (330)
354 PRK10771 thiQ thiamine transpo 99.1 5E-11 1.1E-15 83.5 4.0 48 12-67 16-64 (232)
355 PRK11022 dppD dipeptide transp 99.1 3.4E-11 7.3E-16 88.7 3.3 55 9-67 21-76 (326)
356 PRK13640 cbiO cobalt transport 99.1 3.9E-11 8.4E-16 86.6 3.5 50 10-67 22-75 (282)
357 cd01890 LepA LepA subfamily. 99.1 2.5E-10 5.4E-15 76.1 7.2 79 22-100 2-103 (179)
358 COG4608 AppF ABC-type oligopep 99.1 3.4E-11 7.3E-16 86.2 3.0 52 9-68 27-79 (268)
359 PRK15439 autoinducer 2 ABC tra 99.1 3.6E-11 7.7E-16 92.9 3.4 50 10-67 26-76 (510)
360 PRK14270 phosphate ABC transpo 99.1 4.5E-11 9.7E-16 84.6 3.6 55 10-67 19-74 (251)
361 PRK13541 cytochrome c biogenes 99.1 5.4E-11 1.2E-15 81.4 3.9 46 13-66 18-64 (195)
362 TIGR02868 CydC thiol reductant 99.1 3.9E-11 8.5E-16 92.8 3.5 50 10-67 350-400 (529)
363 PRK14272 phosphate ABC transpo 99.1 5.8E-11 1.3E-15 83.9 4.1 50 10-67 19-74 (252)
364 PRK09984 phosphonate/organopho 99.1 5.1E-11 1.1E-15 84.9 3.8 50 10-67 19-72 (262)
365 PRK14254 phosphate ABC transpo 99.1 4.9E-11 1.1E-15 86.2 3.7 50 10-67 54-109 (285)
366 PRK09580 sufC cysteine desulfu 99.1 4.2E-11 9E-16 84.4 3.2 50 10-67 16-68 (248)
367 PRK10982 galactose/methyl gala 99.1 4.4E-11 9.5E-16 91.9 3.5 50 10-67 13-63 (491)
368 TIGR03238 dnd_assoc_3 dnd syst 99.1 7E-11 1.5E-15 90.6 4.6 82 6-97 17-100 (504)
369 PRK15494 era GTPase Era; Provi 99.1 7.2E-10 1.6E-14 82.1 9.8 78 21-98 53-142 (339)
370 PRK03695 vitamin B12-transport 99.1 5.8E-11 1.3E-15 84.1 3.8 49 10-67 11-60 (248)
371 PRK13546 teichoic acids export 99.1 4.1E-11 8.8E-16 85.9 3.1 47 10-64 39-86 (264)
372 PRK14253 phosphate ABC transpo 99.1 6E-11 1.3E-15 83.8 3.8 49 10-66 18-72 (249)
373 CHL00131 ycf16 sulfate ABC tra 99.1 5.9E-11 1.3E-15 83.9 3.7 52 10-67 22-74 (252)
374 PRK09473 oppD oligopeptide tra 99.1 4.5E-11 9.7E-16 88.2 3.2 51 9-67 30-84 (330)
375 PRK10938 putative molybdenum t 99.1 4.7E-11 1E-15 91.7 3.4 50 9-66 17-67 (490)
376 TIGR03415 ABC_choXWV_ATP choli 99.1 3.8E-11 8.2E-16 90.2 2.7 47 10-64 39-86 (382)
377 KOG0058 Peptide exporter, ABC 99.1 7E-11 1.5E-15 93.4 4.3 54 9-70 482-536 (716)
378 PRK14256 phosphate ABC transpo 99.1 6E-11 1.3E-15 84.0 3.6 50 10-67 19-74 (252)
379 PRK13549 xylose transporter AT 99.1 6.4E-11 1.4E-15 91.4 4.0 50 10-67 20-72 (506)
380 PRK14274 phosphate ABC transpo 99.1 4.9E-11 1.1E-15 84.8 3.2 50 10-67 27-82 (259)
381 cd03297 ABC_ModC_molybdenum_tr 99.1 1.1E-10 2.3E-15 80.9 4.7 46 13-67 16-62 (214)
382 PRK12299 obgE GTPase CgtA; Rev 99.1 3.6E-10 7.8E-15 83.7 7.7 80 22-101 160-250 (335)
383 cd03291 ABCC_CFTR1 The CFTR su 99.1 5.5E-11 1.2E-15 86.1 3.3 47 9-63 51-98 (282)
384 PRK14243 phosphate transporter 99.1 6.8E-11 1.5E-15 84.5 3.7 50 10-67 25-80 (264)
385 COG4133 CcmA ABC-type transpor 99.1 4.8E-11 1E-15 81.7 2.7 50 10-67 17-67 (209)
386 PRK14244 phosphate ABC transpo 99.1 5.9E-11 1.3E-15 84.0 3.3 50 10-67 20-75 (251)
387 TIGR02142 modC_ABC molybdenum 99.1 9.1E-11 2E-15 87.2 4.3 47 13-67 15-62 (354)
388 PRK10762 D-ribose transporter 99.1 7.6E-11 1.6E-15 90.9 4.0 50 10-67 267-317 (501)
389 PRK14249 phosphate ABC transpo 99.1 7.8E-11 1.7E-15 83.4 3.7 50 10-67 19-74 (251)
390 PRK14275 phosphate ABC transpo 99.1 6.3E-11 1.4E-15 85.7 3.3 55 10-67 54-109 (286)
391 COG3840 ThiQ ABC-type thiamine 99.1 6E-11 1.3E-15 81.3 2.9 45 15-67 19-64 (231)
392 PRK11288 araG L-arabinose tran 99.1 7.1E-11 1.5E-15 91.0 3.7 50 10-67 268-318 (501)
393 cd00267 ABC_ATPase ABC (ATP-bi 99.1 7.9E-11 1.7E-15 77.9 3.4 50 10-67 14-64 (157)
394 PRK14263 phosphate ABC transpo 99.1 7.3E-11 1.6E-15 84.3 3.4 50 10-67 23-78 (261)
395 PRK14261 phosphate ABC transpo 99.1 8.8E-11 1.9E-15 83.2 3.8 55 10-67 21-76 (253)
396 PRK13549 xylose transporter AT 99.1 9.2E-11 2E-15 90.5 4.1 51 9-67 276-328 (506)
397 PRK11288 araG L-arabinose tran 99.1 6.4E-11 1.4E-15 91.3 3.2 50 10-67 19-69 (501)
398 COG2274 SunT ABC-type bacterio 99.1 6E-11 1.3E-15 94.9 3.1 55 9-71 487-542 (709)
399 PRK10261 glutathione transport 99.1 6.7E-11 1.5E-15 93.5 3.3 51 9-67 338-389 (623)
400 PRK11144 modC molybdate transp 99.1 1.1E-10 2.4E-15 86.7 4.3 47 13-67 16-63 (352)
401 PRK14239 phosphate transporter 99.1 9E-11 1.9E-15 83.0 3.6 54 10-66 20-74 (252)
402 PRK14271 phosphate ABC transpo 99.1 9.8E-11 2.1E-15 84.3 3.8 50 10-67 36-91 (276)
403 TIGR03797 NHPM_micro_ABC2 NHPM 99.1 7E-11 1.5E-15 94.0 3.2 54 9-70 467-521 (686)
404 TIGR02633 xylG D-xylose ABC tr 99.1 1.1E-10 2.4E-15 89.8 4.2 50 9-66 274-325 (500)
405 TIGR00450 mnmE_trmE_thdF tRNA 99.1 1.4E-09 3.1E-14 83.1 10.1 84 19-102 202-297 (442)
406 cd01879 FeoB Ferrous iron tran 99.1 1.2E-09 2.6E-14 71.1 8.4 76 25-100 1-87 (158)
407 TIGR02528 EutP ethanolamine ut 99.1 6.3E-10 1.4E-14 71.8 7.0 73 22-104 2-79 (142)
408 COG1101 PhnK ABC-type uncharac 99.1 2E-10 4.4E-15 80.4 4.8 53 9-69 20-73 (263)
409 PRK11176 lipid transporter ATP 99.1 8.5E-11 1.9E-15 91.7 3.3 53 10-70 358-411 (582)
410 PRK15134 microcin C ABC transp 99.1 1.1E-10 2.4E-15 90.5 3.9 51 9-67 23-79 (529)
411 PRK10982 galactose/methyl gala 99.1 1.1E-10 2.3E-15 89.8 3.7 50 10-67 263-313 (491)
412 TIGR02633 xylG D-xylose ABC tr 99.1 1.1E-10 2.5E-15 89.8 3.9 50 10-67 16-68 (500)
413 PRK14255 phosphate ABC transpo 99.1 1.1E-10 2.5E-15 82.5 3.5 55 10-67 20-75 (252)
414 PRK14236 phosphate transporter 99.1 1.1E-10 2.5E-15 83.6 3.5 50 10-67 40-95 (272)
415 PRK10636 putative ABC transpor 99.1 8.9E-11 1.9E-15 93.0 3.2 47 10-64 16-63 (638)
416 PRK14264 phosphate ABC transpo 99.1 1.2E-10 2.7E-15 84.9 3.7 50 10-67 60-115 (305)
417 PRK14260 phosphate ABC transpo 99.1 1.3E-10 2.8E-15 82.8 3.7 50 10-67 22-77 (259)
418 PRK14266 phosphate ABC transpo 99.1 9.8E-11 2.1E-15 82.8 3.0 50 10-67 18-73 (250)
419 PRK10261 glutathione transport 99.1 1.1E-10 2.5E-15 92.2 3.6 50 9-66 30-80 (623)
420 PRK14265 phosphate ABC transpo 99.1 1.2E-10 2.6E-15 83.7 3.3 50 10-67 35-90 (274)
421 cd04164 trmE TrmE (MnmE, ThdF, 99.1 2.2E-09 4.8E-14 69.4 9.1 79 22-100 3-93 (157)
422 COG4107 PhnK ABC-type phosphon 99.1 8.5E-11 1.8E-15 80.3 2.4 65 10-82 21-92 (258)
423 PRK03003 GTP-binding protein D 99.0 1.7E-09 3.7E-14 83.1 9.7 80 21-100 39-130 (472)
424 PRK14245 phosphate ABC transpo 99.0 1.4E-10 3E-15 82.1 3.3 53 10-67 18-73 (250)
425 PRK10790 putative multidrug tr 99.0 1E-10 2.2E-15 91.6 2.9 53 10-70 356-409 (592)
426 PRK11160 cysteine/glutathione 99.0 1.2E-10 2.7E-15 91.1 3.3 52 10-69 355-407 (574)
427 PRK11174 cysteine/glutathione 99.0 1.2E-10 2.5E-15 91.2 3.1 51 10-69 365-416 (588)
428 cd03289 ABCC_CFTR2 The CFTR su 99.0 1.5E-10 3.3E-15 83.5 3.5 49 10-67 19-68 (275)
429 TIGR03156 GTP_HflX GTP-binding 99.0 9.7E-10 2.1E-14 81.8 7.9 82 21-103 190-284 (351)
430 TIGR03796 NHPM_micro_ABC1 NHPM 99.0 9.2E-11 2E-15 93.6 2.6 54 9-70 493-547 (710)
431 PRK14252 phosphate ABC transpo 99.0 1.3E-10 2.9E-15 82.9 3.1 51 9-67 30-86 (265)
432 PRK15439 autoinducer 2 ABC tra 99.0 1.8E-10 3.9E-15 89.0 3.9 50 10-67 278-328 (510)
433 PRK15064 ABC transporter ATP-b 99.0 1.3E-10 2.7E-15 90.2 3.0 46 10-63 16-62 (530)
434 PRK14258 phosphate ABC transpo 99.0 1.9E-10 4.1E-15 82.0 3.6 49 10-66 22-76 (261)
435 TIGR02857 CydD thiol reductant 99.0 1.6E-10 3.4E-15 89.4 3.4 51 10-68 337-388 (529)
436 PRK11147 ABC transporter ATPas 99.0 1.4E-10 3E-15 91.8 3.1 47 9-63 17-64 (635)
437 COG1137 YhbG ABC-type (unclass 99.0 8E-12 1.7E-16 86.5 -3.4 51 10-68 19-70 (243)
438 PRK15134 microcin C ABC transp 99.0 1.9E-10 4.2E-15 89.1 3.8 50 9-67 300-350 (529)
439 COG1122 CbiO ABC-type cobalt t 99.0 1.8E-10 3.9E-15 81.5 3.3 51 9-67 18-69 (235)
440 TIGR00436 era GTP-binding prot 99.0 2.8E-09 6.1E-14 76.4 9.4 81 21-101 1-93 (270)
441 cd01897 NOG NOG1 is a nucleola 99.0 3.4E-09 7.3E-14 69.9 9.1 80 22-101 2-93 (168)
442 PRK14246 phosphate ABC transpo 99.0 2E-10 4.3E-15 81.9 3.3 46 10-63 25-71 (257)
443 TIGR00958 3a01208 Conjugate Tr 99.0 1.3E-10 2.9E-15 92.9 2.7 52 10-69 496-548 (711)
444 KOG0393 Ras-related small GTPa 99.0 1.7E-10 3.7E-15 79.5 2.8 87 20-106 4-95 (198)
445 COG4674 Uncharacterized ABC-ty 99.0 3.3E-11 7.2E-16 83.3 -0.9 53 9-69 19-73 (249)
446 PRK11819 putative ABC transpor 99.0 1.9E-10 4E-15 89.8 3.2 45 10-62 22-67 (556)
447 PRK10522 multidrug transporter 99.0 2.1E-10 4.6E-15 89.2 3.5 50 10-67 338-388 (547)
448 TIGR01193 bacteriocin_ABC ABC- 99.0 1.3E-10 2.8E-15 92.7 2.3 53 9-69 488-541 (708)
449 PF01926 MMR_HSR1: 50S ribosom 99.0 6E-09 1.3E-13 65.5 9.4 77 22-99 1-91 (116)
450 cd03236 ABC_RNaseL_inhibitor_d 99.0 3.7E-10 7.9E-15 80.7 4.3 43 9-60 15-58 (255)
451 TIGR03375 type_I_sec_LssB type 99.0 1.9E-10 4.1E-15 91.6 3.0 52 10-69 480-532 (694)
452 TIGR03771 anch_rpt_ABC anchore 99.0 4.6E-10 1E-14 78.4 4.6 42 17-66 2-44 (223)
453 TIGR02729 Obg_CgtA Obg family 99.0 1.9E-09 4E-14 79.7 7.9 80 21-100 158-248 (329)
454 PRK13657 cyclic beta-1,2-gluca 99.0 2.1E-10 4.6E-15 89.8 3.0 52 10-69 350-402 (588)
455 PRK15064 ABC transporter ATP-b 99.0 2.7E-10 5.9E-15 88.3 3.5 46 10-63 334-380 (530)
456 PRK13545 tagH teichoic acids e 99.0 2.8E-10 6.1E-15 88.4 3.5 48 10-65 39-87 (549)
457 TIGR01194 cyc_pep_trnsptr cycl 99.0 3.1E-10 6.7E-15 88.5 3.7 50 10-67 357-407 (555)
458 TIGR02204 MsbA_rel ABC transpo 99.0 2.2E-10 4.7E-15 89.3 2.9 52 10-69 355-407 (576)
459 PRK10789 putative multidrug tr 99.0 3.1E-10 6.7E-15 88.7 3.7 50 10-67 330-380 (569)
460 TIGR03269 met_CoM_red_A2 methy 99.0 2.2E-10 4.9E-15 88.6 2.9 45 10-62 299-344 (520)
461 PRK14257 phosphate ABC transpo 99.0 3.1E-10 6.7E-15 83.7 3.5 55 10-67 97-152 (329)
462 TIGR03719 ABC_ABC_ChvD ATP-bin 99.0 2.7E-10 5.9E-15 88.8 3.4 46 10-63 20-66 (552)
463 COG4615 PvdE ABC-type sideroph 99.0 8.5E-11 1.9E-15 88.4 0.5 65 12-87 340-405 (546)
464 PLN03211 ABC transporter G-25; 99.0 3.7E-10 8.1E-15 89.9 4.0 49 10-66 83-134 (659)
465 TIGR01842 type_I_sec_PrtD type 99.0 3.2E-10 6.9E-15 88.1 3.6 52 9-68 332-384 (544)
466 PRK10636 putative ABC transpor 99.0 4.9E-10 1.1E-14 88.8 4.6 52 10-69 327-380 (638)
467 TIGR02203 MsbA_lipidA lipid A 99.0 2.4E-10 5.3E-15 88.9 2.7 52 10-69 347-399 (571)
468 PRK11819 putative ABC transpor 99.0 3.3E-10 7.2E-15 88.4 3.4 46 10-63 339-385 (556)
469 TIGR01846 type_I_sec_HlyB type 99.0 3.4E-10 7.3E-15 90.2 3.5 53 10-70 472-525 (694)
470 PRK10938 putative molybdenum t 99.0 2.1E-10 4.6E-15 88.1 2.3 48 10-65 275-324 (490)
471 cd01894 EngA1 EngA1 subfamily. 99.0 5E-09 1.1E-13 67.8 8.5 76 24-99 1-88 (157)
472 cd03237 ABC_RNaseL_inhibitor_d 99.0 7E-10 1.5E-14 78.8 4.6 51 10-68 9-65 (246)
473 TIGR03719 ABC_ABC_ChvD ATP-bin 99.0 3.5E-10 7.6E-15 88.2 3.3 46 10-63 337-383 (552)
474 COG4987 CydC ABC-type transpor 99.0 3.4E-10 7.3E-15 87.4 3.1 54 9-70 352-406 (573)
475 PRK05291 trmE tRNA modificatio 99.0 4.2E-09 9E-14 80.6 9.1 83 20-102 215-309 (449)
476 COG4988 CydD ABC-type transpor 99.0 4.6E-10 9.9E-15 87.1 3.4 51 9-67 335-386 (559)
477 COG1132 MdlB ABC-type multidru 99.0 4E-10 8.7E-15 87.9 3.1 54 9-70 343-397 (567)
478 COG2229 Predicted GTPase [Gene 99.0 4.1E-09 8.8E-14 71.7 7.5 85 17-101 7-105 (187)
479 TIGR01192 chvA glucan exporter 98.9 4.7E-10 1E-14 88.0 3.3 50 10-67 350-400 (585)
480 TIGR03269 met_CoM_red_A2 methy 98.9 4.9E-10 1.1E-14 86.7 3.1 45 10-62 15-62 (520)
481 cd04163 Era Era subfamily. Er 98.9 1.8E-08 3.9E-13 65.3 9.9 81 20-100 3-95 (168)
482 PRK00093 GTP-binding protein D 98.9 9.4E-09 2E-13 77.9 9.6 78 22-99 3-92 (435)
483 COG4618 ArpD ABC-type protease 98.9 3.6E-10 7.9E-15 86.8 1.9 54 10-71 351-405 (580)
484 PF02421 FeoB_N: Ferrous iron 98.9 1.4E-08 2.9E-13 67.9 9.3 78 22-99 2-90 (156)
485 PRK11147 ABC transporter ATPas 98.9 5.9E-10 1.3E-14 88.3 3.1 53 10-70 334-388 (635)
486 KOG0057 Mitochondrial Fe/S clu 98.9 4.4E-10 9.6E-15 86.9 2.1 53 9-70 366-419 (591)
487 PLN03140 ABC transporter G fam 98.9 1.4E-09 3.1E-14 92.6 4.8 51 9-67 179-233 (1470)
488 TIGR01257 rim_protein retinal- 98.9 8E-10 1.7E-14 96.3 3.2 50 10-67 1954-2004(2272)
489 PRK00454 engB GTP-binding prot 98.9 1.6E-08 3.5E-13 68.3 8.9 80 19-98 23-117 (196)
490 COG4148 ModC ABC-type molybdat 98.9 5.4E-09 1.2E-13 75.8 6.8 77 13-105 16-93 (352)
491 PLN03232 ABC transporter C fam 98.9 1.1E-09 2.4E-14 93.5 3.8 52 9-68 1250-1302(1495)
492 PRK10535 macrolide transporter 98.9 1.2E-09 2.7E-14 86.7 3.8 50 10-67 23-73 (648)
493 TIGR00955 3a01204 The Eye Pigm 98.9 1.8E-09 3.8E-14 85.4 4.4 50 10-67 40-93 (617)
494 PLN03073 ABC transporter F fam 98.9 9.9E-10 2.2E-14 88.2 3.0 46 10-63 524-570 (718)
495 TIGR03598 GTPase_YsxC ribosome 98.9 1.7E-08 3.7E-13 67.9 8.6 81 18-99 16-112 (179)
496 COG0488 Uup ATPase components 98.9 2.2E-09 4.7E-14 83.6 4.6 54 10-71 337-392 (530)
497 PLN03130 ABC transporter C fam 98.9 1.4E-09 3E-14 93.4 3.8 51 9-67 1253-1304(1622)
498 COG1119 ModF ABC-type molybden 98.9 1.4E-09 3.1E-14 77.1 3.2 51 9-67 45-96 (257)
499 PTZ00243 ABC transporter; Prov 98.9 1.2E-09 2.6E-14 93.5 3.3 53 9-69 1324-1377(1560)
500 PRK15467 ethanolamine utilizat 98.9 1.3E-08 2.9E-13 67.6 7.6 72 22-101 3-78 (158)
No 1
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=5.1e-22 Score=133.99 Aligned_cols=90 Identities=34% Similarity=0.514 Sum_probs=84.3
Q ss_pred CcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 16 ~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
+..++.+|+++|++||||||+++.+...++.++.||++++.+++.+.+..+..||++||+++|.+|++||.+.+++|.+.
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVv 92 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVV 92 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEE
Confidence 67788899999999999999999999888888899999999999999999999999999999999999999999999999
Q ss_pred eCCCcccccc
Q 033893 96 KIEFRDFYEV 105 (109)
Q Consensus 96 ~~~~~~~~~~ 105 (109)
|-+.+.+++.
T Consensus 93 DS~Dr~Ri~e 102 (181)
T KOG0070|consen 93 DSSDRERIEE 102 (181)
T ss_pred eCCcHHHHHH
Confidence 9888776654
No 2
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.84 E-value=1.4e-20 Score=125.22 Aligned_cols=97 Identities=30% Similarity=0.428 Sum_probs=87.6
Q ss_pred HHHHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhh
Q 033893 7 FYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYA 86 (109)
Q Consensus 7 ~~~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~ 86 (109)
+..+|+......++.+|.|+|++||||||+++.+.+...+...||.+|..-++.+.++.+.+||++||...|..|++||.
T Consensus 3 ~lsilrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfe 82 (185)
T KOG0073|consen 3 LLSILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFE 82 (185)
T ss_pred HHHHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhh
Confidence 34577777777778899999999999999999999988788999999999999999999999999999999999999999
Q ss_pred cCCEEEEEEeCCCcccc
Q 033893 87 KVIGSFKTKKIEFRDFY 103 (109)
Q Consensus 87 ~~~~~v~~~~~~~~~~~ 103 (109)
.++++|.+.|.+.+.++
T Consensus 83 stdglIwvvDssD~~r~ 99 (185)
T KOG0073|consen 83 STDGLIWVVDSSDRMRM 99 (185)
T ss_pred ccCeEEEEEECchHHHH
Confidence 99999999998665443
No 3
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.83 E-value=3.2e-20 Score=125.62 Aligned_cols=101 Identities=67% Similarity=1.124 Sum_probs=92.4
Q ss_pred hHHHHHHHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHH
Q 033893 3 LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWK 82 (109)
Q Consensus 3 ~~~~~~~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~ 82 (109)
|+++++++|+.+++..++.+++++|++|||||||++++.+.++..+.||.++..+++.+++..+.+||++|++..+..|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~ 81 (190)
T cd00879 2 IFDWFYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWK 81 (190)
T ss_pred hHHHHHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 57899999999999999999999999999999999999988877788999998999999999999999999999999999
Q ss_pred hhhhcCCEEEEEEeCCCcccc
Q 033893 83 DYYAKVIGSFKTKKIEFRDFY 103 (109)
Q Consensus 83 ~~~~~~~~~v~~~~~~~~~~~ 103 (109)
.|++++++++.+++.+...++
T Consensus 82 ~~~~~ad~iilV~D~~~~~s~ 102 (190)
T cd00879 82 DYFPEVDGIVFLVDAADPERF 102 (190)
T ss_pred HHhccCCEEEEEEECCcHHHH
Confidence 999999999999998755433
No 4
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2e-20 Score=122.11 Aligned_cols=100 Identities=34% Similarity=0.529 Sum_probs=89.9
Q ss_pred HHHHHHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhh
Q 033893 5 DWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 84 (109)
Q Consensus 5 ~~~~~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~ 84 (109)
+.+..++..+ |..++-+++++|+++|||||+|..+.-++....+||++|+.+++.+.+..++.||++|++++|.+|++|
T Consensus 3 n~~sk~~~k~-f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhY 81 (180)
T KOG0071|consen 3 NYMSKLLSKI-FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHY 81 (180)
T ss_pred chHHHHHHHH-hCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhh
Confidence 3455667777 777888999999999999999999998888899999999999999999999999999999999999999
Q ss_pred hhcCCEEEEEEeCCCcccccc
Q 033893 85 YAKVIGSFKTKKIEFRDFYEV 105 (109)
Q Consensus 85 ~~~~~~~v~~~~~~~~~~~~~ 105 (109)
|....+++.+.|-..+++.+.
T Consensus 82 y~gtqglIFV~Dsa~~dr~ee 102 (180)
T KOG0071|consen 82 YTGTQGLIFVVDSADRDRIEE 102 (180)
T ss_pred ccCCceEEEEEeccchhhHHH
Confidence 999999999998777666554
No 5
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2e-20 Score=124.83 Aligned_cols=101 Identities=61% Similarity=0.987 Sum_probs=95.0
Q ss_pred CchHHHHHHHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCccccccc
Q 033893 1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRV 80 (109)
Q Consensus 1 ~~~~~~~~~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~ 80 (109)
|++|+|++.+|..+.+..+.++++.+|+++||||||+++|+..+...++||.+|+++++.++|..+..+|++|....|..
T Consensus 1 ~fl~ewF~~VLq~LgL~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~ 80 (193)
T KOG0077|consen 1 SFLFEWFSSVLQFLGLYKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRV 80 (193)
T ss_pred CcHHHHHHHHHHHHHHhccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHH
Confidence 67899999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHhhhhcCCEEEEEEeCCCcc
Q 033893 81 WKDYYAKVIGSFKTKKIEFRD 101 (109)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~ 101 (109)
|++|+..++++|...+.-...
T Consensus 81 wkdyf~~v~~iv~lvda~d~e 101 (193)
T KOG0077|consen 81 WKDYFPQVDAIVYLVDAYDQE 101 (193)
T ss_pred HHHHHhhhceeEeeeehhhHH
Confidence 999999999999877764443
No 6
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.81 E-value=2.4e-19 Score=121.10 Aligned_cols=95 Identities=34% Similarity=0.486 Sum_probs=85.7
Q ss_pred HHHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc
Q 033893 8 YGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK 87 (109)
Q Consensus 8 ~~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~ 87 (109)
..+|+.+....++.+|+++|++||||||+++.+...++.+..||.++...++.+++..+.+||++|+..+|.+|+.||.+
T Consensus 2 ~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~ 81 (175)
T PF00025_consen 2 SSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQN 81 (175)
T ss_dssp HHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTT
T ss_pred HHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeeccc
Confidence 46677886557788899999999999999999998878789999999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCccc
Q 033893 88 VIGSFKTKKIEFRDF 102 (109)
Q Consensus 88 ~~~~v~~~~~~~~~~ 102 (109)
+++++.+.|.+....
T Consensus 82 ~~~iIfVvDssd~~~ 96 (175)
T PF00025_consen 82 ADGIIFVVDSSDPER 96 (175)
T ss_dssp ESEEEEEEETTGGGG
T ss_pred cceeEEEEeccccee
Confidence 999999999775543
No 7
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.80 E-value=4.6e-19 Score=120.23 Aligned_cols=100 Identities=71% Similarity=1.178 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHh
Q 033893 4 FDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKD 83 (109)
Q Consensus 4 ~~~~~~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~ 83 (109)
|+|+.+++.-.+.+.++.+|+++|++|||||||++.+.+..+....||.++..+++.+++..+.+||++|+++.+..|..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~ 80 (184)
T smart00178 1 FDWFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKD 80 (184)
T ss_pred ChHHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 47888887744445778899999999999999999999887777788888888999999999999999999999999999
Q ss_pred hhhcCCEEEEEEeCCCcccc
Q 033893 84 YYAKVIGSFKTKKIEFRDFY 103 (109)
Q Consensus 84 ~~~~~~~~v~~~~~~~~~~~ 103 (109)
|+.++++++.+.|.+...++
T Consensus 81 ~~~~ad~ii~vvD~~~~~~~ 100 (184)
T smart00178 81 YFPEVNGIVYLVDAYDKERF 100 (184)
T ss_pred HhCCCCEEEEEEECCcHHHH
Confidence 99999999999998765544
No 8
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=3.1e-19 Score=121.29 Aligned_cols=91 Identities=21% Similarity=0.376 Sum_probs=82.0
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcccc-cCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~-~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
...+++|+|.+|+|||||+.++...+|++ ..||++ |-.-++.+++ +++.+||++||++++.+.++||++++++++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 45689999999999999999999888866 589998 5567888887 677799999999999999999999999999
Q ss_pred EEeCCCccccccccCC
Q 033893 94 TKKIEFRDFYEVEIFW 109 (109)
Q Consensus 94 ~~~~~~~~~~~~~~~w 109 (109)
+||++..+++..++.|
T Consensus 84 vYDit~~~SF~~aK~W 99 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNW 99 (200)
T ss_pred EEecccHHHHHHHHHH
Confidence 9999999999988877
No 9
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=4.7e-19 Score=120.81 Aligned_cols=89 Identities=24% Similarity=0.351 Sum_probs=79.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
.+|+|+|.+|+|||.|+..+++..+ ++++.|++.+ ..++.++| ..+++||++||+|+|++..+||++++++|++|
T Consensus 10 FKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vy 89 (205)
T KOG0084|consen 10 FKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVY 89 (205)
T ss_pred EEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEE
Confidence 4789999999999999999999887 5788888854 56778887 57789999999999999999999999999999
Q ss_pred eCCCccccccccCC
Q 033893 96 KIEFRDFYEVEIFW 109 (109)
Q Consensus 96 ~~~~~~~~~~~~~w 109 (109)
|+|...+|.....|
T Consensus 90 DiT~~~SF~~v~~W 103 (205)
T KOG0084|consen 90 DITKQESFNNVKRW 103 (205)
T ss_pred EcccHHHhhhHHHH
Confidence 99999999887766
No 10
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.76 E-value=6e-18 Score=114.76 Aligned_cols=90 Identities=33% Similarity=0.500 Sum_probs=78.7
Q ss_pred CcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 16 ~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
+..++.+|+++|++|+|||||++.+...++..+.||.+++...+..++..+.+||++|+++++.+|+.|++++++++.++
T Consensus 13 ~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~ 92 (182)
T PTZ00133 13 FGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVV 92 (182)
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 45566789999999999999999998777767789988877778888899999999999999999999999999999999
Q ss_pred eCCCcccccc
Q 033893 96 KIEFRDFYEV 105 (109)
Q Consensus 96 ~~~~~~~~~~ 105 (109)
|.+...+++.
T Consensus 93 D~t~~~s~~~ 102 (182)
T PTZ00133 93 DSNDRERIGD 102 (182)
T ss_pred eCCCHHHHHH
Confidence 9877655543
No 11
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.76 E-value=8.3e-18 Score=110.10 Aligned_cols=97 Identities=32% Similarity=0.493 Sum_probs=84.4
Q ss_pred HHHHHhc-CCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC-EEEEEEEcCCcccccccHHhhh
Q 033893 8 YGILASL-GLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK-IKFKAFDLGGHQIARRVWKDYY 85 (109)
Q Consensus 8 ~~~l~~v-~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~-~~i~~~d~~g~~~~r~~~~~~~ 85 (109)
..+|... +-+.++.+++++|+.+|||||+|+.|++....+..||.+|+.-++.+++ ..++.||++|+..+|..|.+||
T Consensus 4 ~til~~~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYy 83 (185)
T KOG0074|consen 4 ETILCCCKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYY 83 (185)
T ss_pred HHHHHHhcCCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhh
Confidence 3444443 3446777899999999999999999999888889999999999999988 8999999999999999999999
Q ss_pred hcCCEEEEEEeCCCccccc
Q 033893 86 AKVIGSFKTKKIEFRDFYE 104 (109)
Q Consensus 86 ~~~~~~v~~~~~~~~~~~~ 104 (109)
.++|+++.+.|-+...+++
T Consensus 84 envd~lIyVIDS~D~krfe 102 (185)
T KOG0074|consen 84 ENVDGLIYVIDSTDEKRFE 102 (185)
T ss_pred hccceEEEEEeCCchHhHH
Confidence 9999999999976666555
No 12
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.76 E-value=6.7e-18 Score=114.50 Aligned_cols=89 Identities=34% Similarity=0.512 Sum_probs=78.7
Q ss_pred CcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 16 ~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
+..++.+|+++|++|||||||++.+...++.+..||.+++...+..++..+.+||++|+++++.+|+.||+++++++.++
T Consensus 13 ~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~ 92 (181)
T PLN00223 13 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 44556789999999999999999998777777789988888788888999999999999999999999999999999999
Q ss_pred eCCCccccc
Q 033893 96 KIEFRDFYE 104 (109)
Q Consensus 96 ~~~~~~~~~ 104 (109)
|.+...+++
T Consensus 93 D~s~~~s~~ 101 (181)
T PLN00223 93 DSNDRDRVV 101 (181)
T ss_pred eCCcHHHHH
Confidence 998766554
No 13
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.73 E-value=2.5e-17 Score=110.82 Aligned_cols=88 Identities=35% Similarity=0.532 Sum_probs=77.5
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI 97 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~ 97 (109)
.++.+|+++|++|+|||||++.+....+.++.||.+.+..++..++..+.+||++|+++++.+|+.|++++++++.++|.
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~ 90 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDS 90 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEEC
Confidence 34678999999999999999999766676778998888778888889999999999999999999999999999999999
Q ss_pred CCcccccc
Q 033893 98 EFRDFYEV 105 (109)
Q Consensus 98 ~~~~~~~~ 105 (109)
+...+++.
T Consensus 91 t~~~s~~~ 98 (175)
T smart00177 91 NDRDRIDE 98 (175)
T ss_pred CCHHHHHH
Confidence 87766554
No 14
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.73 E-value=3.1e-18 Score=112.62 Aligned_cols=102 Identities=24% Similarity=0.383 Sum_probs=89.2
Q ss_pred chHHHHHHHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEEEECCEEEEEEEcCCccccccc
Q 033893 2 FLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRV 80 (109)
Q Consensus 2 ~~~~~~~~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~ 80 (109)
++++....++.++ |...+-++.++|+..|||||+.+.+...++ +..+||.++..-+++-++..+.+||++||+++|.+
T Consensus 3 ~~~~k~L~wi~~~-f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsm 81 (186)
T KOG0075|consen 3 AKLRKKLVWICNS-FWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM 81 (186)
T ss_pred hHHHHHHHHHHHH-HHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHH
Confidence 4566667777776 777888999999999999999999987665 78999999999999999999999999999999999
Q ss_pred HHhhhhcCCEEEEEEeCCCccccc
Q 033893 81 WKDYYAKVIGSFKTKKIEFRDFYE 104 (109)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~~ 104 (109)
|+.||+.+++++.+.|-+..+..+
T Consensus 82 WerycR~v~aivY~VDaad~~k~~ 105 (186)
T KOG0075|consen 82 WERYCRGVSAIVYVVDAADPDKLE 105 (186)
T ss_pred HHHHhhcCcEEEEEeecCCcccch
Confidence 999999999999998876655444
No 15
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.73 E-value=1.4e-17 Score=111.04 Aligned_cols=89 Identities=22% Similarity=0.363 Sum_probs=77.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcccccCCc-cc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPT-QH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt-~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
.+|+|+|++|+|||+|+..+....|.+..|+ ++ |..-.+.++| .++.+||.+||+++|++.+.||+.+.+++.+|
T Consensus 12 ~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVY 91 (209)
T KOG0080|consen 12 FKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVY 91 (209)
T ss_pred EEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEE
Confidence 5789999999999999999998888776665 55 4456677777 57779999999999999999999999999999
Q ss_pred eCCCccccccccCC
Q 033893 96 KIEFRDFYEVEIFW 109 (109)
Q Consensus 96 ~~~~~~~~~~~~~w 109 (109)
|++.++++.+.+-|
T Consensus 92 DVT~Rdtf~kLd~W 105 (209)
T KOG0080|consen 92 DVTSRDTFVKLDIW 105 (209)
T ss_pred EccchhhHHhHHHH
Confidence 99999988876545
No 16
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.72 E-value=2.7e-17 Score=110.05 Aligned_cols=96 Identities=30% Similarity=0.432 Sum_probs=83.7
Q ss_pred HHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcC
Q 033893 9 GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKV 88 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~ 88 (109)
.+++..+...++.+|+++|++|||||||++++.+..+....||.++....+.+++..+.+||++|++.++..|..|++++
T Consensus 3 ~~~~~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~ 82 (173)
T cd04154 3 TIIRKQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFEST 82 (173)
T ss_pred hhhhhhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCC
Confidence 45667777777789999999999999999999988777778888887788888999999999999999999999999999
Q ss_pred CEEEEEEeCCCccccc
Q 033893 89 IGSFKTKKIEFRDFYE 104 (109)
Q Consensus 89 ~~~v~~~~~~~~~~~~ 104 (109)
++++.+++.+...+++
T Consensus 83 d~~i~v~d~~~~~s~~ 98 (173)
T cd04154 83 DALIWVVDSSDRLRLD 98 (173)
T ss_pred CEEEEEEECCCHHHHH
Confidence 9999999987765443
No 17
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.72 E-value=2.9e-17 Score=108.88 Aligned_cols=84 Identities=32% Similarity=0.509 Sum_probs=74.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD 101 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~ 101 (109)
+|+++|.+|||||||++.+...++....||.+++...+......+.+||++|+++++.+|+.||+++++++.++|.+...
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~ 81 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 81 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH
Confidence 68999999999999999998777767789988887778888899999999999999999999999999999999998766
Q ss_pred cccc
Q 033893 102 FYEV 105 (109)
Q Consensus 102 ~~~~ 105 (109)
+++.
T Consensus 82 s~~~ 85 (159)
T cd04150 82 RIGE 85 (159)
T ss_pred HHHH
Confidence 5543
No 18
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.71 E-value=5.4e-17 Score=108.68 Aligned_cols=88 Identities=36% Similarity=0.546 Sum_probs=77.0
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI 97 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~ 97 (109)
.+..+|+++|++|||||||++.+...++..+.||.+.+...+...+..+.+||++|+++++.+|+.||+++++++.++|.
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~ 86 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDS 86 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeC
Confidence 35568999999999999999999877777778888888777777889999999999999999999999999999999998
Q ss_pred CCcccccc
Q 033893 98 EFRDFYEV 105 (109)
Q Consensus 98 ~~~~~~~~ 105 (109)
+...+++.
T Consensus 87 t~~~s~~~ 94 (168)
T cd04149 87 ADRDRIDE 94 (168)
T ss_pred CchhhHHH
Confidence 87655543
No 19
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=3.2e-17 Score=111.99 Aligned_cols=95 Identities=22% Similarity=0.320 Sum_probs=83.6
Q ss_pred CCcccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCC
Q 033893 15 GLWQKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVI 89 (109)
Q Consensus 15 ~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~ 89 (109)
+...+..+++++|..++|||+|+.++....| .++.+|++. ...++.+.+ +.+.+||++||+++|.+.+.|++++.
T Consensus 17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 3345557899999999999999999998887 689999984 457777876 68889999999999999999999999
Q ss_pred EEEEEEeCCCccccccccCC
Q 033893 90 GSFKTKKIEFRDFYEVEIFW 109 (109)
Q Consensus 90 ~~v~~~~~~~~~~~~~~~~w 109 (109)
++|++||++...+++....|
T Consensus 97 vaviVyDit~~~Sfe~t~kW 116 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSKW 116 (221)
T ss_pred EEEEEEeccccchHHHHHHH
Confidence 99999999999999887766
No 20
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.70 E-value=6.4e-17 Score=111.85 Aligned_cols=88 Identities=16% Similarity=0.350 Sum_probs=75.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
.|+++|.+|+|||||++.+....| .++.||.+. ....+.+++ +.+.+||++|+++++.+|+.||++++++++++|
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD 81 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD 81 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence 478999999999999999998877 456677653 345677877 677899999999999999999999999999999
Q ss_pred CCCccccccccCC
Q 033893 97 IEFRDFYEVEIFW 109 (109)
Q Consensus 97 ~~~~~~~~~~~~w 109 (109)
++...+++....|
T Consensus 82 vtd~~Sf~~l~~w 94 (202)
T cd04120 82 ITKKETFDDLPKW 94 (202)
T ss_pred CcCHHHHHHHHHH
Confidence 9998888776555
No 21
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.70 E-value=7.9e-17 Score=107.58 Aligned_cols=83 Identities=36% Similarity=0.486 Sum_probs=73.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD 101 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~ 101 (109)
+|+++|++|||||||++.+.+.....+.||.++...++..++..+.+||++|+++++.+|+.|++++++++.++|.+...
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 37899999999999999999874457789998888888889999999999999999999999999999999999987765
Q ss_pred ccc
Q 033893 102 FYE 104 (109)
Q Consensus 102 ~~~ 104 (109)
+++
T Consensus 81 s~~ 83 (167)
T cd04161 81 RVQ 83 (167)
T ss_pred HHH
Confidence 554
No 22
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.69 E-value=1.3e-16 Score=106.51 Aligned_cols=85 Identities=33% Similarity=0.537 Sum_probs=75.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD 101 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~ 101 (109)
+|+++|++|||||||++++.+..+..+.||.++....+.+++..+.+||++|+++++..|..|++++++++.+++.+...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 57899999999999999999887777889988877788888899999999999999999999999999999999998776
Q ss_pred ccccc
Q 033893 102 FYEVE 106 (109)
Q Consensus 102 ~~~~~ 106 (109)
+++..
T Consensus 81 s~~~~ 85 (169)
T cd04158 81 RVSEA 85 (169)
T ss_pred HHHHH
Confidence 55543
No 23
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.67 E-value=2.7e-16 Score=104.85 Aligned_cols=82 Identities=33% Similarity=0.447 Sum_probs=72.1
Q ss_pred EEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc
Q 033893 23 ILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD 101 (109)
Q Consensus 23 i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~ 101 (109)
|+++|++|+|||||++.+.+..+ ..+.||.++....+..++..+.+||++|+++++.+|+.|++++++++.++|.+...
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 78999999999999999998765 56789988876677777899999999999999999999999999999999987765
Q ss_pred ccc
Q 033893 102 FYE 104 (109)
Q Consensus 102 ~~~ 104 (109)
+++
T Consensus 82 s~~ 84 (164)
T cd04162 82 RLP 84 (164)
T ss_pred HHH
Confidence 544
No 24
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.66 E-value=3.9e-16 Score=101.18 Aligned_cols=82 Identities=27% Similarity=0.458 Sum_probs=72.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCc
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFR 100 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~ 100 (109)
+|+++|++|||||||++++.+.++ .++.||.+++...+..++..+.+||++|+++++..|..|+..+++++.+++.+..
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 80 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADR 80 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCH
Confidence 478999999999999999999876 5688888888778888889999999999999999999999999999999998765
Q ss_pred ccc
Q 033893 101 DFY 103 (109)
Q Consensus 101 ~~~ 103 (109)
..+
T Consensus 81 ~~~ 83 (159)
T cd04159 81 TAL 83 (159)
T ss_pred HHH
Confidence 443
No 25
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.66 E-value=3.3e-16 Score=106.85 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=74.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceE-EEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSE-ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g-~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
.-+|+++|.+|+|||+|++.+....| .++.||.+.... .+.+++ +.+.+||++|+++++.+++.||++++++++++
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvy 82 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICF 82 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEE
Confidence 35799999999999999999998887 577888864432 345665 67789999999999999999999999999999
Q ss_pred eCCCcccccccc
Q 033893 96 KIEFRDFYEVEI 107 (109)
Q Consensus 96 ~~~~~~~~~~~~ 107 (109)
+++...+++...
T Consensus 83 dit~~~Sf~~~~ 94 (191)
T cd01875 83 SIASPSSYENVR 94 (191)
T ss_pred ECCCHHHHHHHH
Confidence 999988887654
No 26
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.66 E-value=7.1e-16 Score=103.51 Aligned_cols=86 Identities=33% Similarity=0.527 Sum_probs=76.1
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI 97 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~ 97 (109)
.+..+|+++|++|+|||||++.+.+..+....||.+.+.+.+.+++..+.+||++|++.++..|+.+++++++++.++|.
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~ 92 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDS 92 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEEC
Confidence 34568999999999999999999987776678888888888888899999999999999999999999999999999998
Q ss_pred CCcccc
Q 033893 98 EFRDFY 103 (109)
Q Consensus 98 ~~~~~~ 103 (109)
+...++
T Consensus 93 s~~~~~ 98 (174)
T cd04153 93 TDRERL 98 (174)
T ss_pred CCHHHH
Confidence 765543
No 27
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.66 E-value=7.1e-16 Score=102.58 Aligned_cols=92 Identities=30% Similarity=0.496 Sum_probs=77.0
Q ss_pred HHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCC
Q 033893 10 ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVI 89 (109)
Q Consensus 10 ~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~ 89 (109)
++......-++.+++++|++|||||||++.+.+..+....|+.++....+..++..+.+||.+|+.+.+..|..++++++
T Consensus 4 ~~~~~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 83 (173)
T cd04155 4 LLRKLRKSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTD 83 (173)
T ss_pred HHHHhhccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCC
Confidence 34444334456779999999999999999999987766778777777788889999999999999988889999999999
Q ss_pred EEEEEEeCCCcc
Q 033893 90 GSFKTKKIEFRD 101 (109)
Q Consensus 90 ~~v~~~~~~~~~ 101 (109)
+++.++|.+...
T Consensus 84 ~ii~v~D~~~~~ 95 (173)
T cd04155 84 CLIYVIDSADKK 95 (173)
T ss_pred EEEEEEeCCCHH
Confidence 999999886543
No 28
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.65 E-value=7.3e-16 Score=103.86 Aligned_cols=85 Identities=20% Similarity=0.202 Sum_probs=73.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceE-EEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSE-ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI 97 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g-~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~ 97 (109)
+|+++|.+|+|||||++.+....+ .++.||.+.... ++.+++ +.+.+||++|+++++.+++.|+++++++++++++
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~ 82 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSV 82 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEEC
Confidence 689999999999999999998877 578888875443 566777 6778999999999999999999999999999999
Q ss_pred CCccccccc
Q 033893 98 EFRDFYEVE 106 (109)
Q Consensus 98 ~~~~~~~~~ 106 (109)
+...+++..
T Consensus 83 ~~~~s~~~~ 91 (175)
T cd01874 83 VSPSSFENV 91 (175)
T ss_pred CCHHHHHHH
Confidence 888777654
No 29
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.65 E-value=7.6e-16 Score=105.45 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=75.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
..+|+++|..|+|||||++.+....+ .++.|+.+.+ .-++.+++ +.+.+||++|+++++.+|+.|++++++++++
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illV 85 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILV 85 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEE
Confidence 35799999999999999999998776 3455665543 34566777 6778899999999999999999999999999
Q ss_pred EeCCCccccccccCC
Q 033893 95 KKIEFRDFYEVEIFW 109 (109)
Q Consensus 95 ~~~~~~~~~~~~~~w 109 (109)
+|++...+++....|
T Consensus 86 fD~t~~~Sf~~~~~w 100 (189)
T cd04121 86 YDITNRWSFDGIDRW 100 (189)
T ss_pred EECcCHHHHHHHHHH
Confidence 999999888876655
No 30
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.64 E-value=8.9e-16 Score=104.23 Aligned_cols=88 Identities=20% Similarity=0.219 Sum_probs=74.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
+++++|.+|+|||||++.+.+..+. ++.||.+.+. ..+.+++ +.+.+||++|+++++.+|+.|++++++++.++|
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D 81 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFD 81 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEE
Confidence 6899999999999999999987774 5788887554 4677777 577899999999999999999999999999999
Q ss_pred CCCccccccccCC
Q 033893 97 IEFRDFYEVEIFW 109 (109)
Q Consensus 97 ~~~~~~~~~~~~w 109 (109)
++...+++....|
T Consensus 82 ~t~~~s~~~i~~~ 94 (182)
T cd04128 82 LTRKSTLNSIKEW 94 (182)
T ss_pred CcCHHHHHHHHHH
Confidence 9888877665444
No 31
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=8.1e-16 Score=105.42 Aligned_cols=88 Identities=16% Similarity=0.317 Sum_probs=72.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEEC-C--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIG-K--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~-~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
+|+++|++|+|||||++.+.+..+ ..+.||.+.+ ...+.++ + +.+.+||++|+++++.+|+.|+++++++++++
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 81 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVF 81 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEE
Confidence 689999999999999999998776 4567887643 3455665 3 67889999999999999999999999999999
Q ss_pred eCCCccccccccCC
Q 033893 96 KIEFRDFYEVEIFW 109 (109)
Q Consensus 96 ~~~~~~~~~~~~~w 109 (109)
|++...+++....|
T Consensus 82 D~t~~~s~~~~~~~ 95 (201)
T cd04107 82 DVTRPSTFEAVLKW 95 (201)
T ss_pred ECCCHHHHHHHHHH
Confidence 99888777654433
No 32
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.64 E-value=9e-16 Score=100.74 Aligned_cols=82 Identities=34% Similarity=0.523 Sum_probs=71.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc--cccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL--VQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEF 99 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~--~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~ 99 (109)
+|+++|++|||||||++.+.+..+ ....||.++....+..++..+.+||++|+++++.+|+.|++++++++.++|.+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 478999999999999999998742 457788887777777788999999999999999999999999999999999876
Q ss_pred cccc
Q 033893 100 RDFY 103 (109)
Q Consensus 100 ~~~~ 103 (109)
..++
T Consensus 81 ~~~~ 84 (162)
T cd04157 81 RLRL 84 (162)
T ss_pred HHHH
Confidence 5544
No 33
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.63 E-value=1.4e-15 Score=102.95 Aligned_cols=86 Identities=33% Similarity=0.469 Sum_probs=72.0
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEE-----CCEEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSI-----GKIKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~-----~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
+..+|+++|.+|||||||++.+.+..+.+..||.+++...+.+ .++.+.+||++|+++++.+|+.|++++++++.
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 4668999999999999999999988776667888766655544 34789999999999999999999999999999
Q ss_pred EEeCCCccccc
Q 033893 94 TKKIEFRDFYE 104 (109)
Q Consensus 94 ~~~~~~~~~~~ 104 (109)
++|.+...+++
T Consensus 82 v~D~~~~~~~~ 92 (183)
T cd04152 82 VVDSVDVERME 92 (183)
T ss_pred EEECCCHHHHH
Confidence 99987654443
No 34
>PLN00023 GTP-binding protein; Provisional
Probab=99.63 E-value=1.2e-15 Score=111.95 Aligned_cols=91 Identities=18% Similarity=0.341 Sum_probs=76.2
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEEC---------------CEEEEEEEcCCccccccc
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIG---------------KIKFKAFDLGGHQIARRV 80 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~---------------~~~i~~~d~~g~~~~r~~ 80 (109)
...+|+++|.+|+|||||++.+.+..+ ....||++.+. ..+.++ .+.+.+||++|+++++.+
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL 99 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC 99 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence 345789999999999999999998876 46788887653 456654 256889999999999999
Q ss_pred HHhhhhcCCEEEEEEeCCCccccccccCC
Q 033893 81 WKDYYAKVIGSFKTKKIEFRDFYEVEIFW 109 (109)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~w 109 (109)
|+.||++++++|+++|++...+++....|
T Consensus 100 ~~~yyr~AdgiILVyDITdr~SFenL~kW 128 (334)
T PLN00023 100 RSLFYSQINGVIFVHDLSQRRTKTSLQKW 128 (334)
T ss_pred hHHhccCCCEEEEEEeCCCHHHHHHHHHH
Confidence 99999999999999999998887765554
No 35
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.63 E-value=1.5e-15 Score=103.41 Aligned_cols=90 Identities=21% Similarity=0.296 Sum_probs=75.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
..+|+++|.+|+|||+|++.+....+ .++.||.+... -.+.+++ +.+.+||++|+++++.+++.||++++++++++
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvy 84 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF 84 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEE
Confidence 45789999999999999999998877 56788886433 3456665 57889999999999999999999999999999
Q ss_pred eCCCccccccc-cCC
Q 033893 96 KIEFRDFYEVE-IFW 109 (109)
Q Consensus 96 ~~~~~~~~~~~-~~w 109 (109)
|++...+++.. ..|
T Consensus 85 Dit~~~Sf~~~~~~w 99 (182)
T cd04172 85 DISRPETLDSVLKKW 99 (182)
T ss_pred ECCCHHHHHHHHHHH
Confidence 99988888764 444
No 36
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.62 E-value=2.1e-15 Score=99.94 Aligned_cols=88 Identities=23% Similarity=0.437 Sum_probs=73.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
+|+++|++|+|||||++.+...++ .++.||.+.+. ..+.+++ ..+.+||.+|+++++.+++.|++++++++.++|
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYD 81 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEE
Confidence 689999999999999999998777 45678877543 4566666 567899999999999999999999999999999
Q ss_pred CCCccccccccCC
Q 033893 97 IEFRDFYEVEIFW 109 (109)
Q Consensus 97 ~~~~~~~~~~~~w 109 (109)
++...+++....|
T Consensus 82 ~~~~~sf~~~~~~ 94 (161)
T cd04117 82 ISSERSYQHIMKW 94 (161)
T ss_pred CCCHHHHHHHHHH
Confidence 9888777765444
No 37
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.62 E-value=1.6e-15 Score=104.94 Aligned_cols=88 Identities=17% Similarity=0.305 Sum_probs=74.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEEC-------CEEEEEEEcCCcccccccHHhhhhcCCEE
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIG-------KIKFKAFDLGGHQIARRVWKDYYAKVIGS 91 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~-------~~~i~~~d~~g~~~~r~~~~~~~~~~~~~ 91 (109)
+|+++|.+|+|||+|++.+.+..+ .+..||++.+. ..+.++ .+.+.+||++|+++++.+++.||++++++
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~i 81 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGI 81 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEE
Confidence 689999999999999999998876 45778877432 344442 26788999999999999999999999999
Q ss_pred EEEEeCCCccccccccCC
Q 033893 92 FKTKKIEFRDFYEVEIFW 109 (109)
Q Consensus 92 v~~~~~~~~~~~~~~~~w 109 (109)
++++|++...+++....|
T Consensus 82 IlVyDvtn~~Sf~~l~~W 99 (202)
T cd04102 82 ILVHDLTNRKSSQNLQRW 99 (202)
T ss_pred EEEEECcChHHHHHHHHH
Confidence 999999999888877666
No 38
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.62 E-value=1.6e-15 Score=105.71 Aligned_cols=92 Identities=21% Similarity=0.282 Sum_probs=75.7
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEEE--EC--CEEEEEEEcCCcccccccHHhhhhcCCEEE
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEELS--IG--KIKFKAFDLGGHQIARRVWKDYYAKVIGSF 92 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i~--~~--~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v 92 (109)
....+|+++|.+|+|||||++.+....+ ..+.||.+.+...+. .+ ...+.+||++|+++++.+|..||++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 4456899999999999999999887776 567888876554433 33 368889999999999999999999999999
Q ss_pred EEEeCCCccccccccCC
Q 033893 93 KTKKIEFRDFYEVEIFW 109 (109)
Q Consensus 93 ~~~~~~~~~~~~~~~~w 109 (109)
+++|++...+++....|
T Consensus 91 lvfD~~~~~s~~~i~~w 107 (219)
T PLN03071 91 IMFDVTARLTYKNVPTW 107 (219)
T ss_pred EEEeCCCHHHHHHHHHH
Confidence 99999988877665444
No 39
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.3e-15 Score=104.95 Aligned_cols=89 Identities=24% Similarity=0.372 Sum_probs=78.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
.+++++|.+|+|||.++.++....| ...+.|++ |..-+|.+++ +.+.+||.+||+++|++...||+.+.+++.++
T Consensus 13 ~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~Lvy 92 (207)
T KOG0078|consen 13 FKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVY 92 (207)
T ss_pred EEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEE
Confidence 4689999999999999999998888 46777887 4457888888 56779999999999999999999999999999
Q ss_pred eCCCccccccccCC
Q 033893 96 KIEFRDFYEVEIFW 109 (109)
Q Consensus 96 ~~~~~~~~~~~~~w 109 (109)
|++...+++....|
T Consensus 93 Ditne~Sfeni~~W 106 (207)
T KOG0078|consen 93 DITNEKSFENIRNW 106 (207)
T ss_pred EccchHHHHHHHHH
Confidence 99999999887666
No 40
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.62 E-value=3.1e-15 Score=98.27 Aligned_cols=86 Identities=15% Similarity=0.188 Sum_probs=70.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc-CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH-PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~-~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
.+|+++|++|||||||++.+....+ .++.||.+ .....+.+++ ..+.+||++|+++++.+|+.|++++++++++++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 4789999999999999999997776 45667665 2235566776 456789999999999999999999999999999
Q ss_pred CCCccccccc
Q 033893 97 IEFRDFYEVE 106 (109)
Q Consensus 97 ~~~~~~~~~~ 106 (109)
++...+++..
T Consensus 82 ~~~~~s~~~~ 91 (163)
T cd04136 82 ITSQSSFNDL 91 (163)
T ss_pred CCCHHHHHHH
Confidence 9877666543
No 41
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.62 E-value=2e-15 Score=99.38 Aligned_cols=81 Identities=37% Similarity=0.545 Sum_probs=71.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD 101 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~ 101 (109)
+|+++|++|+|||||++++....+....||.+++...+...+..+.+||++|+++++.+|+.|+..+++++.+++.+...
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 57999999999999999998777767788888887788888899999999999999999999999999999999987654
Q ss_pred c
Q 033893 102 F 102 (109)
Q Consensus 102 ~ 102 (109)
+
T Consensus 81 ~ 81 (158)
T cd04151 81 R 81 (158)
T ss_pred H
Confidence 3
No 42
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.62 E-value=2.8e-15 Score=100.67 Aligned_cols=88 Identities=18% Similarity=0.236 Sum_probs=73.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
..+|+++|.+|+|||||++.+.+.++. ++.||.+... .++.+++ ..+.+||++|+++++.+|+.|++.++++++++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 357899999999999999999988774 6778876433 3567777 56788999999999999999999999999999
Q ss_pred eCCCcccccccc
Q 033893 96 KIEFRDFYEVEI 107 (109)
Q Consensus 96 ~~~~~~~~~~~~ 107 (109)
+.+...+++...
T Consensus 82 d~~~~~Sf~~~~ 93 (172)
T cd04141 82 SVTDRHSFQEAS 93 (172)
T ss_pred ECCchhHHHHHH
Confidence 998887776544
No 43
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.62 E-value=2.7e-15 Score=98.61 Aligned_cols=86 Identities=21% Similarity=0.354 Sum_probs=71.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceE--EEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSE--ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g--~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
+|+++|++|+|||||++++.+.++ ..+.|+.+.+.+ .+.+++ ..+.+||.+|+++++.+++.+++++++++.++|
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D 81 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYD 81 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998876 567788775543 455555 677899999999999999999999999999999
Q ss_pred CCCcccccccc
Q 033893 97 IEFRDFYEVEI 107 (109)
Q Consensus 97 ~~~~~~~~~~~ 107 (109)
.+...+++...
T Consensus 82 ~~~~~s~~~~~ 92 (168)
T cd04119 82 VTDRQSFEALD 92 (168)
T ss_pred CCCHHHHHhHH
Confidence 98776665443
No 44
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.62 E-value=2.1e-15 Score=105.63 Aligned_cols=86 Identities=21% Similarity=0.181 Sum_probs=74.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD 101 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~ 101 (109)
+|+++|.+|+|||||++.+...++.+..||.+.+.....+..+.+.+||++|+++++.+++.|+++++++++++|++...
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~ 81 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQ 81 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999888877788887665555556788999999999999999999999999999999998877
Q ss_pred cccccc
Q 033893 102 FYEVEI 107 (109)
Q Consensus 102 ~~~~~~ 107 (109)
+++...
T Consensus 82 Sf~~l~ 87 (220)
T cd04126 82 SLEELE 87 (220)
T ss_pred HHHHHH
Confidence 776543
No 45
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.62 E-value=2e-15 Score=102.27 Aligned_cols=89 Identities=20% Similarity=0.263 Sum_probs=73.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
.+|+++|.+|+|||+|++.+.+..+ .++.||.+... -.+.+++ +.+.+||++|+++++.+.+.|+++++++++++|
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfd 81 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFD 81 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEE
Confidence 4789999999999999999998877 46778875332 3456666 567799999999999999999999999999999
Q ss_pred CCCccccccc-cCC
Q 033893 97 IEFRDFYEVE-IFW 109 (109)
Q Consensus 97 ~~~~~~~~~~-~~w 109 (109)
++...+++.. ..|
T Consensus 82 it~~~Sf~~~~~~w 95 (178)
T cd04131 82 ISRPETLDSVLKKW 95 (178)
T ss_pred CCChhhHHHHHHHH
Confidence 9988888763 444
No 46
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.61 E-value=3.4e-15 Score=98.99 Aligned_cols=89 Identities=24% Similarity=0.391 Sum_probs=71.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCceE--EEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTSE--ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~g--~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
-+|+++|+.|+|||||++.+...++. +..||.+.+.. .+.+++ +.+.+||++|+++++..++.|++++++++.++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 82 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 82 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 46899999999999999999988774 45566654433 345665 56789999999999999999999999999999
Q ss_pred eCCCccccccccCC
Q 033893 96 KIEFRDFYEVEIFW 109 (109)
Q Consensus 96 ~~~~~~~~~~~~~w 109 (109)
|.+...+++....|
T Consensus 83 d~~~~~s~~~~~~~ 96 (166)
T cd04122 83 DITRRSTYNHLSSW 96 (166)
T ss_pred ECCCHHHHHHHHHH
Confidence 99887777654443
No 47
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.61 E-value=3.1e-15 Score=101.38 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=74.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI 97 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~ 97 (109)
+++++|.+|+|||+|++++....| .++.||.+... -.+.+++ +.+.+||++|+++++.+++.|+++++++++++|+
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~ 82 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 82 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEc
Confidence 689999999999999999998887 46889886433 3456665 6778999999999999999999999999999999
Q ss_pred CCccccccc-cCC
Q 033893 98 EFRDFYEVE-IFW 109 (109)
Q Consensus 98 ~~~~~~~~~-~~w 109 (109)
+...+++.. ..|
T Consensus 83 ~~~~Sf~~~~~~w 95 (176)
T cd04133 83 ISRASYENVLKKW 95 (176)
T ss_pred CCHHHHHHHHHHH
Confidence 999888775 344
No 48
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.61 E-value=4.8e-15 Score=97.71 Aligned_cols=87 Identities=15% Similarity=0.176 Sum_probs=70.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc-CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH-PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~-~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
.+|+++|.+|+|||||++.+....+ .+..||.. +...++.+++ ..+.+||++|+++++.+|+.|++++++++++++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d 81 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEE
Confidence 4789999999999999999987776 45566654 3345677776 456789999999999999999999999999999
Q ss_pred CCCcccccccc
Q 033893 97 IEFRDFYEVEI 107 (109)
Q Consensus 97 ~~~~~~~~~~~ 107 (109)
++...+++...
T Consensus 82 ~~~~~s~~~~~ 92 (163)
T cd04176 82 LVNQQTFQDIK 92 (163)
T ss_pred CCCHHHHHHHH
Confidence 98876665433
No 49
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.61 E-value=3.1e-15 Score=98.22 Aligned_cols=83 Identities=34% Similarity=0.507 Sum_probs=71.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC-CEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCc
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG-KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFR 100 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~-~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~ 100 (109)
+|+++|++|||||||++.+.+.++....||.+.....+..+ ...+.+||++|+++++..|..++.++++++.++|.+..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 47899999999999999999888766788888777777665 47899999999999999999999999999999998665
Q ss_pred cccc
Q 033893 101 DFYE 104 (109)
Q Consensus 101 ~~~~ 104 (109)
.+++
T Consensus 81 ~~~~ 84 (160)
T cd04156 81 ARLD 84 (160)
T ss_pred HHHH
Confidence 4433
No 50
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.61 E-value=3.3e-15 Score=100.17 Aligned_cols=89 Identities=17% Similarity=0.214 Sum_probs=73.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
++|+++|.+|+|||||++++.+..+ .++.||.+.+. ..+.+++ ..+.+||++|++++..+++.+++++++++.++
T Consensus 1 ~ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 80 (170)
T cd04108 1 SKVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVF 80 (170)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEE
Confidence 4789999999999999999998877 46778876443 4556665 56889999999999999999999999999999
Q ss_pred eCCCccccccccCC
Q 033893 96 KIEFRDFYEVEIFW 109 (109)
Q Consensus 96 ~~~~~~~~~~~~~w 109 (109)
+.+...+++....|
T Consensus 81 d~~~~~s~~~~~~~ 94 (170)
T cd04108 81 DLTDVASLEHTRQW 94 (170)
T ss_pred ECcCHHHHHHHHHH
Confidence 99877666654444
No 51
>PTZ00369 Ras-like protein; Provisional
Probab=99.60 E-value=2.8e-15 Score=101.90 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=73.1
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
.++.+|+++|.+|+|||||++.+.+.++ .++.||.+... ..+.+++ +.+.+||++|+++++.+|..|+++++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 3457899999999999999999998776 46677766433 3455665 467789999999999999999999999999
Q ss_pred EEeCCCcccccccc
Q 033893 94 TKKIEFRDFYEVEI 107 (109)
Q Consensus 94 ~~~~~~~~~~~~~~ 107 (109)
+++.+...+++...
T Consensus 83 v~D~s~~~s~~~~~ 96 (189)
T PTZ00369 83 VYSITSRSSFEEIA 96 (189)
T ss_pred EEECCCHHHHHHHH
Confidence 99998877665443
No 52
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.60 E-value=4.9e-15 Score=97.23 Aligned_cols=83 Identities=36% Similarity=0.550 Sum_probs=74.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD 101 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~ 101 (109)
+|+++|..|||||||++++.+.+.....|+.+.....+.+++..+.+||++|+++++..|+.++.++++++.++|.+...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 57999999999999999999888777888888888888888999999999999999999999999999999999987765
Q ss_pred ccc
Q 033893 102 FYE 104 (109)
Q Consensus 102 ~~~ 104 (109)
+++
T Consensus 81 ~~~ 83 (158)
T cd00878 81 RIE 83 (158)
T ss_pred HHH
Confidence 443
No 53
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.60 E-value=6.2e-15 Score=96.34 Aligned_cols=85 Identities=19% Similarity=0.256 Sum_probs=68.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
.+|+++|++|+|||||++++.+.++ ....||.+.. ...+.+++ +.+.+||++|+++++.+++.|++++++++.+++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~ 81 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 81 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEE
Confidence 4789999999999999999998776 4566766532 34455666 457789999999999999999999999999999
Q ss_pred CCCcccccc
Q 033893 97 IEFRDFYEV 105 (109)
Q Consensus 97 ~~~~~~~~~ 105 (109)
++...+++.
T Consensus 82 ~~~~~s~~~ 90 (162)
T cd04138 82 INSRKSFED 90 (162)
T ss_pred CCCHHHHHH
Confidence 877655544
No 54
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.60 E-value=4.3e-15 Score=104.19 Aligned_cols=86 Identities=21% Similarity=0.258 Sum_probs=73.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
.+|+++|.+|+|||+|++.+.+..+ .++.||...+. ..+.+++ +.+.+||++|++.++.+++.||+++++++++++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 4789999999999999999998877 46889887543 3566666 567789999999999999999999999999999
Q ss_pred CCCccccccc
Q 033893 97 IEFRDFYEVE 106 (109)
Q Consensus 97 ~~~~~~~~~~ 106 (109)
++...+++..
T Consensus 82 is~~~Sf~~i 91 (222)
T cd04173 82 ISRPETLDSV 91 (222)
T ss_pred CCCHHHHHHH
Confidence 9988877664
No 55
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.60 E-value=4.7e-15 Score=98.34 Aligned_cols=89 Identities=20% Similarity=0.342 Sum_probs=72.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
.+|+++|++|||||||++.+.+.++ ..+.||.+.+ ..++..++ ..+.+||.+|+++++.+|..+++++++++.++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 3789999999999999999998877 4566776533 33555554 67889999999999999999999999999999
Q ss_pred eCCCccccccccCC
Q 033893 96 KIEFRDFYEVEIFW 109 (109)
Q Consensus 96 ~~~~~~~~~~~~~w 109 (109)
|.+...+++....|
T Consensus 82 d~~~~~s~~~~~~~ 95 (165)
T cd01865 82 DITNEESFNAVQDW 95 (165)
T ss_pred ECCCHHHHHHHHHH
Confidence 99877776654444
No 56
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.59 E-value=7.8e-15 Score=96.89 Aligned_cols=86 Identities=15% Similarity=0.198 Sum_probs=69.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
.+|+++|.+|||||||++.+....+ ..+.||.+.. .-.+.+++ +.+.+||++|+++++.+++.|++++++++++++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYS 81 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEE
Confidence 5789999999999999999986665 4566766533 23566665 456689999999999999999999999999999
Q ss_pred CCCccccccc
Q 033893 97 IEFRDFYEVE 106 (109)
Q Consensus 97 ~~~~~~~~~~ 106 (109)
++...+++..
T Consensus 82 ~~~~~s~~~~ 91 (164)
T cd04175 82 ITAQSTFNDL 91 (164)
T ss_pred CCCHHHHHHH
Confidence 8776666543
No 57
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=2.3e-15 Score=99.96 Aligned_cols=89 Identities=25% Similarity=0.436 Sum_probs=74.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCceE--EEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTSE--ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~g--~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
.+++++|+.|+|||.||+.+...++. ...-|++.+.| -|.+++ +++.+||.+||+++|++.++||+.+.+.+.++
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVY 89 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 89 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEE
Confidence 36899999999999999999988874 34445664444 466666 67889999999999999999999999999999
Q ss_pred eCCCccccccccCC
Q 033893 96 KIEFRDFYEVEIFW 109 (109)
Q Consensus 96 ~~~~~~~~~~~~~w 109 (109)
|++.++++.....|
T Consensus 90 D~TsrdsfnaLtnW 103 (214)
T KOG0086|consen 90 DITSRDSFNALTNW 103 (214)
T ss_pred eccchhhHHHHHHH
Confidence 99999988776554
No 58
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=4.6e-15 Score=100.92 Aligned_cols=90 Identities=26% Similarity=0.388 Sum_probs=77.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
..+++++|..|+|||.||..+....| +-+..|++.+. ..+.+++ +++++||++|++.+|++.+.||+.+.+++++
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLV 85 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLV 85 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEE
Confidence 45789999999999999999999887 44556777544 4677777 6777999999999999999999999999999
Q ss_pred EeCCCccccccccCC
Q 033893 95 KKIEFRDFYEVEIFW 109 (109)
Q Consensus 95 ~~~~~~~~~~~~~~w 109 (109)
||++.++++.+...|
T Consensus 86 ydit~r~sF~hL~~w 100 (216)
T KOG0098|consen 86 YDITRRESFNHLTSW 100 (216)
T ss_pred EEccchhhHHHHHHH
Confidence 999999998877666
No 59
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.59 E-value=6.6e-15 Score=98.56 Aligned_cols=89 Identities=18% Similarity=0.287 Sum_probs=71.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEEC------------CEEEEEEEcCCcccccccHHhhh
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIG------------KIKFKAFDLGGHQIARRVWKDYY 85 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~------------~~~i~~~d~~g~~~~r~~~~~~~ 85 (109)
-+|+++|++|+|||||++.+.+..+ ..+.||.+.+. ..+.++ ...+.+||.+|+++++.+++.|+
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 84 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFF 84 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHh
Confidence 5789999999999999999998776 45677776433 334443 26788999999999999999999
Q ss_pred hcCCEEEEEEeCCCccccccccCC
Q 033893 86 AKVIGSFKTKKIEFRDFYEVEIFW 109 (109)
Q Consensus 86 ~~~~~~v~~~~~~~~~~~~~~~~w 109 (109)
++++++++++|.+...++.....|
T Consensus 85 ~~~~~~i~v~d~~~~~s~~~~~~~ 108 (180)
T cd04127 85 RDAMGFLLIFDLTNEQSFLNVRNW 108 (180)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHH
Confidence 999999999999877776654433
No 60
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.58 E-value=9e-16 Score=113.58 Aligned_cols=76 Identities=22% Similarity=0.273 Sum_probs=62.7
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK 87 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~ 87 (109)
.+++++++++++|++ +|+|||||||||+|++|+|. ..|+.|+|.++|.++. +++...+
T Consensus 19 ~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf--------e~p~~G~I~l~G~~i~--~lpp~kR----------- 77 (352)
T COG3842 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF--------EQPSSGEILLDGEDIT--DVPPEKR----------- 77 (352)
T ss_pred eEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEECC--CCChhhc-----------
Confidence 368899999999997 89999999999999999999 8899999999999887 5543322
Q ss_pred CCEEEEEEeCCCccccccc
Q 033893 88 VIGSFKTKKIEFRDFYEVE 106 (109)
Q Consensus 88 ~~~~v~~~~~~~~~~~~~~ 106 (109)
+.-++++++.+|||++++
T Consensus 78 -~ig~VFQ~YALFPHltV~ 95 (352)
T COG3842 78 -PIGMVFQSYALFPHMTVE 95 (352)
T ss_pred -ccceeecCcccCCCCcHH
Confidence 344566777888887764
No 61
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.58 E-value=8.4e-15 Score=97.25 Aligned_cols=88 Identities=16% Similarity=0.245 Sum_probs=71.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
-+|+++|++|+|||||++++.+..+. ...|+.+.+ ..++.+++ ..+.+||++|+++++.++..|++++++++.++
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 85 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTF 85 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEE
Confidence 46899999999999999999987764 456666543 23556666 56678999999999999999999999999999
Q ss_pred eCCCccccccccC
Q 033893 96 KIEFRDFYEVEIF 108 (109)
Q Consensus 96 ~~~~~~~~~~~~~ 108 (109)
+++...+++....
T Consensus 86 d~~~~~s~~~~~~ 98 (170)
T cd04116 86 AVDDSQSFQNLSN 98 (170)
T ss_pred ECCCHHHHHhHHH
Confidence 9987776665443
No 62
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.58 E-value=8.7e-15 Score=103.26 Aligned_cols=87 Identities=17% Similarity=0.223 Sum_probs=73.3
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
...+|+++|.+|+|||+|++.+....| .++.||++.+. -.+.+++ +.+.+||++|+++++.+++.||+++++++++
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 345789999999999999999998877 56788876432 3456665 6788999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
+|++...+++.
T Consensus 92 yDit~~~Sf~~ 102 (232)
T cd04174 92 FDISRPETVDS 102 (232)
T ss_pred EECCChHHHHH
Confidence 99998888875
No 63
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.58 E-value=9.1e-15 Score=101.37 Aligned_cols=88 Identities=22% Similarity=0.360 Sum_probs=72.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEEC---CEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIG---KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~---~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
+|+++|.+|+|||||++.+.+..+ ..+.||.+.+ ...+.++ ...+.+||++|++.++.+++.|++++|+++.++
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~ 81 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVY 81 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEE
Confidence 689999999999999999998877 4577887644 3456664 368889999999999999999999999999999
Q ss_pred eCCCccccccccCC
Q 033893 96 KIEFRDFYEVEIFW 109 (109)
Q Consensus 96 ~~~~~~~~~~~~~w 109 (109)
|.+...+++....|
T Consensus 82 D~t~~~s~~~~~~w 95 (215)
T cd04109 82 DVTNSQSFENLEDW 95 (215)
T ss_pred ECCCHHHHHHHHHH
Confidence 99887776654433
No 64
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=2.7e-15 Score=103.47 Aligned_cols=89 Identities=21% Similarity=0.398 Sum_probs=77.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
.+|+++|.+|+|||-||-++..++| .+.-+|++ |...++.+++ +...+||.+||+++|.+-..||+.+.+.+++|
T Consensus 15 FKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVY 94 (222)
T KOG0087|consen 15 FKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 94 (222)
T ss_pred EEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEE
Confidence 4689999999999999999999988 45667777 4445677787 56679999999999999999999999999999
Q ss_pred eCCCccccccccCC
Q 033893 96 KIEFRDFYEVEIFW 109 (109)
Q Consensus 96 ~~~~~~~~~~~~~w 109 (109)
|++...+++...+|
T Consensus 95 DITr~~Tfenv~rW 108 (222)
T KOG0087|consen 95 DITRRQTFENVERW 108 (222)
T ss_pred echhHHHHHHHHHH
Confidence 99999999988777
No 65
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.57 E-value=1.2e-14 Score=96.60 Aligned_cols=88 Identities=20% Similarity=0.292 Sum_probs=72.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
-+|+++|++|+|||||++.+.+..+ ..+.|+.+.+. ..+.+++ ..+.+||++|++++...+..++++++++++++
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~ 83 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVY 83 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEE
Confidence 4789999999999999999998877 45677776433 4566666 56789999999999999999999999999999
Q ss_pred eCCCccccccccC
Q 033893 96 KIEFRDFYEVEIF 108 (109)
Q Consensus 96 ~~~~~~~~~~~~~ 108 (109)
+.+...+++....
T Consensus 84 d~~~~~s~~~~~~ 96 (167)
T cd01867 84 DITDEKSFENIRN 96 (167)
T ss_pred ECcCHHHHHhHHH
Confidence 9987777665433
No 66
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.57 E-value=1.5e-14 Score=95.67 Aligned_cols=87 Identities=20% Similarity=0.292 Sum_probs=70.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
-+++++|++|+|||||++++.+.++ ..+.|+.+.+ ...+.+++ ..+.+||.+|++++...++.+++++++++.++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~ 82 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 82 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEE
Confidence 3689999999999999999998776 3556666533 34566665 46789999999999999999999999999999
Q ss_pred eCCCcccccccc
Q 033893 96 KIEFRDFYEVEI 107 (109)
Q Consensus 96 ~~~~~~~~~~~~ 107 (109)
|.+...+++...
T Consensus 83 d~~~~~s~~~l~ 94 (166)
T cd01869 83 DVTDQESFNNVK 94 (166)
T ss_pred ECcCHHHHHhHH
Confidence 998776665543
No 67
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.57 E-value=1.2e-14 Score=98.83 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=69.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECCE--EEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGKI--KFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI 97 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~~--~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~ 97 (109)
+|+++|.+|+|||||++.+....+ ..+.||.+.. ...+.+++. .+.+||++|+++++.+++.|+++++++++++++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 478999999999999999997777 4466776533 234556664 577899999999999999999999999999999
Q ss_pred CCcccccccc
Q 033893 98 EFRDFYEVEI 107 (109)
Q Consensus 98 ~~~~~~~~~~ 107 (109)
+...+++...
T Consensus 81 ~~~~s~~~~~ 90 (190)
T cd04144 81 TSRSTFERVE 90 (190)
T ss_pred CCHHHHHHHH
Confidence 8777665533
No 68
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.57 E-value=1.1e-14 Score=99.02 Aligned_cols=85 Identities=21% Similarity=0.264 Sum_probs=71.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI 97 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~ 97 (109)
+|+++|++|+|||||++.+.+..+. ++.||..... ..+.+++ ..+.+||++|+++++.+++.|+++++++++++++
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv 81 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV 81 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence 6899999999999999999988774 4677775432 3455665 5788999999999999999999999999999999
Q ss_pred CCccccccc
Q 033893 98 EFRDFYEVE 106 (109)
Q Consensus 98 ~~~~~~~~~ 106 (109)
+...+++..
T Consensus 82 ~~~~sf~~~ 90 (189)
T cd04134 82 DSPDSLENV 90 (189)
T ss_pred CCHHHHHHH
Confidence 888777643
No 69
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.57 E-value=1.5e-14 Score=95.82 Aligned_cols=86 Identities=20% Similarity=0.225 Sum_probs=67.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
+|+++|.+|+|||||++.+...++. ...|+.+++. -.+.+++ ..+.+||++|+++++.+++.|++++++++.++|
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 81 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFD 81 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEE
Confidence 6899999999999999999987764 4455544332 2344554 567799999999999999999999999999999
Q ss_pred CCCcccccccc
Q 033893 97 IEFRDFYEVEI 107 (109)
Q Consensus 97 ~~~~~~~~~~~ 107 (109)
.+...+++...
T Consensus 82 ~~~~~s~~~~~ 92 (161)
T cd04124 82 VTRKITYKNLS 92 (161)
T ss_pred CCCHHHHHHHH
Confidence 87766655433
No 70
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=2.1e-15 Score=99.01 Aligned_cols=85 Identities=36% Similarity=0.547 Sum_probs=78.2
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE 98 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~ 98 (109)
++-++.++|..|+||||++..+.-.+..++.||.+++.++|.+.+.++..||++|+..+|..|+-||.+.++++.+.|-+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDss 96 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSS 96 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEecc
Confidence 67789999999999999999999888889999999999999999999999999999999999999999999999988876
Q ss_pred Ccccc
Q 033893 99 FRDFY 103 (109)
Q Consensus 99 ~~~~~ 103 (109)
..++.
T Consensus 97 d~dri 101 (182)
T KOG0072|consen 97 DRDRI 101 (182)
T ss_pred chhhh
Confidence 55543
No 71
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.56 E-value=1.2e-14 Score=95.41 Aligned_cols=87 Identities=15% Similarity=0.235 Sum_probs=70.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEEC----CEEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIG----KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~----~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
+|+++|.+|+|||||++.+.+..+ ....||.+.+. ..+.++ ...+.+||++|+++++.+++.|++++++++.+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v 81 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILV 81 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEE
Confidence 689999999999999999998776 45667766443 344444 36788999999999999999999999999999
Q ss_pred EeCCCccccccccC
Q 033893 95 KKIEFRDFYEVEIF 108 (109)
Q Consensus 95 ~~~~~~~~~~~~~~ 108 (109)
++.+...+++....
T Consensus 82 ~d~~~~~s~~~l~~ 95 (162)
T cd04106 82 FSTTDRESFEAIES 95 (162)
T ss_pred EECCCHHHHHHHHH
Confidence 99887766655433
No 72
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1.9e-15 Score=111.30 Aligned_cols=74 Identities=24% Similarity=0.321 Sum_probs=61.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKV 88 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~ 88 (109)
++++++++++.|++ +|+|||||||||+||+|+|. ..++.|+|.++|.+++ |++..++
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL--------e~~~~G~I~i~g~~vt--~l~P~~R------------ 75 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL--------EEPTSGEILIDGRDVT--DLPPEKR------------ 75 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEECC--CCChhHC------------
Confidence 68899999999996 99999999999999999999 8899999999999988 6655443
Q ss_pred CEEEEEEeCCCcccccc
Q 033893 89 IGSFKTKKIEFRDFYEV 105 (109)
Q Consensus 89 ~~~v~~~~~~~~~~~~~ 105 (109)
+..++++++.++|+.++
T Consensus 76 ~iamVFQ~yALyPhmtV 92 (338)
T COG3839 76 GIAMVFQNYALYPHMTV 92 (338)
T ss_pred CEEEEeCCccccCCCcH
Confidence 45555666666666554
No 73
>PLN03108 Rab family protein; Provisional
Probab=99.56 E-value=1.6e-14 Score=99.91 Aligned_cols=88 Identities=24% Similarity=0.382 Sum_probs=72.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
-+|+|+|++|+|||||++.+.+.++ ....||.+.+ .+.+.+++ +.+.+||++|+++++.+++.++++++++++++
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~ 86 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEE
Confidence 5789999999999999999998876 3466777654 45677776 45779999999999999999999999999999
Q ss_pred eCCCccccccccC
Q 033893 96 KIEFRDFYEVEIF 108 (109)
Q Consensus 96 ~~~~~~~~~~~~~ 108 (109)
+.+...+++....
T Consensus 87 D~~~~~s~~~l~~ 99 (210)
T PLN03108 87 DITRRETFNHLAS 99 (210)
T ss_pred ECCcHHHHHHHHH
Confidence 9987776665433
No 74
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.56 E-value=1.7e-14 Score=95.42 Aligned_cols=89 Identities=26% Similarity=0.423 Sum_probs=72.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
-+|+++|++|||||||++.+.+..+. +..|+.+. ..-++.+++ ..+.+||.+|+++++.+++.+++++++++.++
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~ 83 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAY 83 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEE
Confidence 57899999999999999999877663 45566553 345666777 57789999999999999999999999999999
Q ss_pred eCCCccccccccCC
Q 033893 96 KIEFRDFYEVEIFW 109 (109)
Q Consensus 96 ~~~~~~~~~~~~~w 109 (109)
+.+...+++....|
T Consensus 84 d~~~~~s~~~~~~~ 97 (165)
T cd01864 84 DITRRSSFESVPHW 97 (165)
T ss_pred ECcCHHHHHhHHHH
Confidence 99887776654433
No 75
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.56 E-value=1.7e-14 Score=98.87 Aligned_cols=88 Identities=19% Similarity=0.259 Sum_probs=72.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
..+|+++|++|+|||||++.+.+..+ ..+.||.+.+. -++.+++ ..+.+||++|+++++.++..|++++++++.+
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv 85 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 85 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence 35789999999999999999998876 45678776443 4555555 5778999999999999999999999999999
Q ss_pred EeCCCcccccccc
Q 033893 95 KKIEFRDFYEVEI 107 (109)
Q Consensus 95 ~~~~~~~~~~~~~ 107 (109)
+|.+...+++...
T Consensus 86 ~D~~~~~s~~~~~ 98 (199)
T cd04110 86 YDVTNGESFVNVK 98 (199)
T ss_pred EECCCHHHHHHHH
Confidence 9998777665443
No 76
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.56 E-value=1.7e-14 Score=95.29 Aligned_cols=80 Identities=35% Similarity=0.556 Sum_probs=68.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-------cccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-------VQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-------~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
+|+++|++|||||||++++.+... ....||.+.+.+.+.+++..+.+||++|++.++.+|..+++++++++.+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 378999999999999999976421 2456777878888999999999999999999999999999999999999
Q ss_pred EeCCCcc
Q 033893 95 KKIEFRD 101 (109)
Q Consensus 95 ~~~~~~~ 101 (109)
.|.+...
T Consensus 81 vd~~~~~ 87 (167)
T cd04160 81 IDSTDRE 87 (167)
T ss_pred EECchHH
Confidence 9876543
No 77
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.55 E-value=2.1e-14 Score=95.71 Aligned_cols=89 Identities=22% Similarity=0.301 Sum_probs=71.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc--eEEEEECC--EEEEEEEcCCccccc-ccHHhhhhcCCEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIAR-RVWKDYYAKVIGSFKT 94 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r-~~~~~~~~~~~~~v~~ 94 (109)
.+|+++|++|+|||||++++.+..+. .+.|+.+.+ ...+.+++ ..+.+||.+|+++++ .+++.|++++++++.+
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v 82 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFV 82 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEE
Confidence 47899999999999999999987763 566776533 34566666 678899999999887 5889999999999999
Q ss_pred EeCCCccccccccCC
Q 033893 95 KKIEFRDFYEVEIFW 109 (109)
Q Consensus 95 ~~~~~~~~~~~~~~w 109 (109)
+|.+...+++....|
T Consensus 83 ~d~~~~~s~~~~~~~ 97 (170)
T cd04115 83 YDVTNMASFHSLPSW 97 (170)
T ss_pred EECCCHHHHHhHHHH
Confidence 999877766554433
No 78
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.55 E-value=1.7e-14 Score=96.16 Aligned_cols=86 Identities=20% Similarity=0.248 Sum_probs=70.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEEEE--C--CEEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEELSI--G--KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i~~--~--~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
+|+++|+.|||||||++++....+ ....||.+.+...+.+ + ...+.+||++|++++..++..+++.+++++.+++
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 81 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFD 81 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEE
Confidence 689999999999999999987665 4577877655444433 3 3688899999999999999999999999999999
Q ss_pred CCCcccccccc
Q 033893 97 IEFRDFYEVEI 107 (109)
Q Consensus 97 ~~~~~~~~~~~ 107 (109)
.+...+++...
T Consensus 82 ~~~~~s~~~~~ 92 (166)
T cd00877 82 VTSRVTYKNVP 92 (166)
T ss_pred CCCHHHHHHHH
Confidence 98777765443
No 79
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.3e-14 Score=96.00 Aligned_cols=89 Identities=19% Similarity=0.295 Sum_probs=75.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCccccc-CCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLVQH-QPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~~~-~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
.+|+++|--|+|||.|++.+...-|++- ..|++ |..-++.++| +++.+||.+|++++|++.+.||+.+++++.++
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvy 87 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVY 87 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEE
Confidence 3689999999999999999997666543 33454 5567888887 67779999999999999999999999999999
Q ss_pred eCCCccccccccCC
Q 033893 96 KIEFRDFYEVEIFW 109 (109)
Q Consensus 96 ~~~~~~~~~~~~~w 109 (109)
|++.-++++-..+|
T Consensus 88 discqpsfdclpew 101 (213)
T KOG0095|consen 88 DISCQPSFDCLPEW 101 (213)
T ss_pred ecccCcchhhhHHH
Confidence 99999998876666
No 80
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.55 E-value=2.3e-14 Score=94.59 Aligned_cols=89 Identities=22% Similarity=0.406 Sum_probs=72.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
-+|+++|++|||||||++++.+.++ ....|+.+. ...++..++ ..+.+||.+|+++++.+++.++.++++++.++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 83 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 83 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEE
Confidence 3689999999999999999998876 356677654 345566676 46789999999999999999999999999999
Q ss_pred eCCCccccccccCC
Q 033893 96 KIEFRDFYEVEIFW 109 (109)
Q Consensus 96 ~~~~~~~~~~~~~w 109 (109)
+.+...+++...+|
T Consensus 84 d~~~~~s~~~~~~~ 97 (165)
T cd01868 84 DITKKQTFENVERW 97 (165)
T ss_pred ECcCHHHHHHHHHH
Confidence 99876666654433
No 81
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.55 E-value=3.3e-14 Score=95.12 Aligned_cols=85 Identities=14% Similarity=0.118 Sum_probs=70.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCccc--ccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLV--QHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~--~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
.+|+++|.+|+|||||++++.+..+. ++.||.+.+ ...+.+++ ..+.+||.+|+++++.++..||+++|+++.+
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv 84 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLV 84 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEE
Confidence 46899999999999999999988774 577887654 34566777 5677899999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
+|.+...+++.
T Consensus 85 ~d~~~~~s~~~ 95 (169)
T cd01892 85 YDSSDPKSFSY 95 (169)
T ss_pred EeCCCHHHHHH
Confidence 99877666554
No 82
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.54 E-value=3e-14 Score=95.92 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=71.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
.+++++|.+|+|||||++.+....+ .++.||..... -.+.+++ ..+.+||++|+++++.+++.|++++++++.+++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 3689999999999999999998776 56778775332 2455666 567799999999999999999999999999999
Q ss_pred CCCccccccc
Q 033893 97 IEFRDFYEVE 106 (109)
Q Consensus 97 ~~~~~~~~~~ 106 (109)
++...+++..
T Consensus 82 ~~~~~sf~~~ 91 (174)
T cd01871 82 LVSPASFENV 91 (174)
T ss_pred CCCHHHHHHH
Confidence 9887776654
No 83
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.54 E-value=3.4e-14 Score=93.22 Aligned_cols=85 Identities=20% Similarity=0.309 Sum_probs=69.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
+|+++|++|||||||++.+.+.++. ...|+.+. ....+.+++ ..+.+||.+|+++++.+++.+++.+++++.+++
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d 81 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 81 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999988763 45666553 345566666 467899999999999999999999999999999
Q ss_pred CCCccccccc
Q 033893 97 IEFRDFYEVE 106 (109)
Q Consensus 97 ~~~~~~~~~~ 106 (109)
.+...+++..
T Consensus 82 ~~~~~s~~~~ 91 (161)
T cd01861 82 ITNRQSFDNT 91 (161)
T ss_pred CcCHHHHHHH
Confidence 9876666543
No 84
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.54 E-value=3.1e-14 Score=96.43 Aligned_cols=86 Identities=20% Similarity=0.339 Sum_probs=71.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccc-cCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~~-~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
+|+++|++|+|||||++.+.+..+.. +.||.+.+ ...+.+++ +.+.+||.+|+++++..++.++.++++++.+++
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d 81 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYD 81 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEE
Confidence 68999999999999999999888754 67777643 34566665 567789999999999999999999999999999
Q ss_pred CCCcccccccc
Q 033893 97 IEFRDFYEVEI 107 (109)
Q Consensus 97 ~~~~~~~~~~~ 107 (109)
.+...+++...
T Consensus 82 ~~~~~s~~~i~ 92 (188)
T cd04125 82 VTDQESFENLK 92 (188)
T ss_pred CcCHHHHHHHH
Confidence 98777766543
No 85
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.54 E-value=3.5e-14 Score=98.21 Aligned_cols=88 Identities=22% Similarity=0.261 Sum_probs=69.2
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEEEE--C--CEEEEEEEcCCcccccccHHhhhhcCCEEE
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEELSI--G--KIKFKAFDLGGHQIARRVWKDYYAKVIGSF 92 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i~~--~--~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v 92 (109)
....+++++|++|||||||++.+....+ ..+.||.+.+...+.+ + ++.+.+||++|+++++.++..|+.++++++
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i 86 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI 86 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence 3456899999999999999965544444 5677888766554443 2 478889999999999999999999999999
Q ss_pred EEEeCCCcccccc
Q 033893 93 KTKKIEFRDFYEV 105 (109)
Q Consensus 93 ~~~~~~~~~~~~~ 105 (109)
.+++++...++..
T Consensus 87 ~v~d~~~~~s~~~ 99 (215)
T PTZ00132 87 IMFDVTSRITYKN 99 (215)
T ss_pred EEEECcCHHHHHH
Confidence 9999986665543
No 86
>PLN03110 Rab GTPase; Provisional
Probab=99.53 E-value=3.6e-14 Score=98.67 Aligned_cols=89 Identities=20% Similarity=0.402 Sum_probs=73.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
-+|+++|++|+|||||++++.+.++ .+..||.+.+ ..++.+++ ..+.+||++|+++++.+++.|+++++++++++
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 92 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 92 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEE
Confidence 4789999999999999999998776 4566777643 45677766 57889999999999999999999999999999
Q ss_pred eCCCccccccccCC
Q 033893 96 KIEFRDFYEVEIFW 109 (109)
Q Consensus 96 ~~~~~~~~~~~~~w 109 (109)
|.+...+++....|
T Consensus 93 d~~~~~s~~~~~~~ 106 (216)
T PLN03110 93 DITKRQTFDNVQRW 106 (216)
T ss_pred ECCChHHHHHHHHH
Confidence 99877666554433
No 87
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.53 E-value=4.6e-14 Score=92.76 Aligned_cols=87 Identities=18% Similarity=0.347 Sum_probs=70.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcccc-cCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~~-~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
.+++++|++|||||||++.+.+.++.. ..|+.+. ..-++.+++ ..+.+||.+|+++++..++.+++++++++.++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 478999999999999999999888744 6676653 345666665 56789999999999999999999999999999
Q ss_pred eCCCcccccccc
Q 033893 96 KIEFRDFYEVEI 107 (109)
Q Consensus 96 ~~~~~~~~~~~~ 107 (109)
+.+...+++...
T Consensus 82 d~~~~~s~~~~~ 93 (163)
T cd01860 82 DITSEESFEKAK 93 (163)
T ss_pred ECcCHHHHHHHH
Confidence 987766655433
No 88
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.53 E-value=4.3e-14 Score=92.95 Aligned_cols=88 Identities=22% Similarity=0.314 Sum_probs=73.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
+|+++|++|+|||||++.+.+.++ .+..||.+.+. -++.+++ ..+.+||.+|++++..+...+++++++++++++
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 689999999999999999998877 46778875443 4555655 568899999999998898999999999999999
Q ss_pred CCCccccccccCC
Q 033893 97 IEFRDFYEVEIFW 109 (109)
Q Consensus 97 ~~~~~~~~~~~~w 109 (109)
++...+++....|
T Consensus 81 ~~~~~S~~~~~~~ 93 (162)
T PF00071_consen 81 VTDEESFENLKKW 93 (162)
T ss_dssp TTBHHHHHTHHHH
T ss_pred ccccccccccccc
Confidence 9988888765544
No 89
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.7e-14 Score=97.13 Aligned_cols=90 Identities=31% Similarity=0.494 Sum_probs=77.0
Q ss_pred CcccccEEEEEeCCCCcHHHHHHHHhcC--------cccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc
Q 033893 16 LWQKEAKILFLGLDNAGKTTLLHMLKDE--------RLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK 87 (109)
Q Consensus 16 ~~~~~~~i~lvG~~GsGKSTll~~l~g~--------~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~ 87 (109)
+.-..-.++|+|+++|||||++-+.+.. +.....||++.+.|+|.+++..+..||++||+..|++|..||..
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHH
Confidence 4444556899999999999999877632 23457899999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCcccccc
Q 033893 88 VIGSFKTKKIEFRDFYEV 105 (109)
Q Consensus 88 ~~~~v~~~~~~~~~~~~~ 105 (109)
+++++.+.|-+.+.+++.
T Consensus 93 ~H~ii~viDa~~~eR~~~ 110 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEE 110 (197)
T ss_pred hceeEEeecCCCHHHHHH
Confidence 999999999887766554
No 90
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.53 E-value=6.5e-14 Score=92.24 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=67.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI 97 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~ 97 (109)
+|+++|++|||||||++++.+.++. ...|+.... .-.+.+++ ..+.+||++|+++++.+++.+++++++++++++.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~ 81 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSI 81 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEEC
Confidence 7899999999999999999987763 455655422 23455555 5677899999999999999999999999999998
Q ss_pred CCcccccc
Q 033893 98 EFRDFYEV 105 (109)
Q Consensus 98 ~~~~~~~~ 105 (109)
+...+++.
T Consensus 82 ~~~~s~~~ 89 (164)
T smart00173 82 TDRQSFEE 89 (164)
T ss_pred CCHHHHHH
Confidence 87665544
No 91
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.53 E-value=4.6e-14 Score=95.73 Aligned_cols=84 Identities=19% Similarity=0.325 Sum_probs=69.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCccc--ccCCcccCc--eEEEEECCE--EEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLV--QHQPTQHPT--SEELSIGKI--KFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~--~~~pt~~~~--~g~i~~~~~--~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
+|+++|.+|+|||||++.+.+.++. ++.||.+.. ...+.+++. .+.+||.+|+++++.+++.|+++++++++++
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~ 81 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCY 81 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEE
Confidence 6899999999999999999988764 467777643 345677764 5569999999999999999999999999999
Q ss_pred eCCCcccccc
Q 033893 96 KIEFRDFYEV 105 (109)
Q Consensus 96 ~~~~~~~~~~ 105 (109)
+.+...+++.
T Consensus 82 d~~~~~s~~~ 91 (193)
T cd04118 82 DLTDSSSFER 91 (193)
T ss_pred ECCCHHHHHH
Confidence 9977766544
No 92
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.53 E-value=6.8e-14 Score=92.97 Aligned_cols=83 Identities=18% Similarity=0.153 Sum_probs=65.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccc-cCCcccCceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQHPTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE 98 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~~-~~pt~~~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~ 98 (109)
+|+++|++|+|||||++.+....+.+ ..|+.+....++.+++ +.+.+||++|++. ..|++++++++.++|++
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~ 76 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLE 76 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECC
Confidence 68999999999999999887766643 3454444456788888 5578999999975 46788999999999999
Q ss_pred CccccccccCC
Q 033893 99 FRDFYEVEIFW 109 (109)
Q Consensus 99 ~~~~~~~~~~w 109 (109)
...+++....|
T Consensus 77 ~~~sf~~~~~~ 87 (158)
T cd04103 77 NEASFQTVYNL 87 (158)
T ss_pred CHHHHHHHHHH
Confidence 99888765443
No 93
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.53 E-value=1.8e-14 Score=99.45 Aligned_cols=84 Identities=18% Similarity=0.246 Sum_probs=70.0
Q ss_pred EeCCCCcHHHHHHHHhcCccc-ccCCcccCceE--EEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCc
Q 033893 26 LGLDNAGKTTLLHMLKDERLV-QHQPTQHPTSE--ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFR 100 (109)
Q Consensus 26 vG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~g--~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~ 100 (109)
+|.+|+|||||++.+....+. ++.||++.+.. .+.+++ ..+.+||++|+++++.+|+.||+++++++++++++..
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 699999999999999977774 57888875543 344444 6888999999999999999999999999999999988
Q ss_pred cccccccCC
Q 033893 101 DFYEVEIFW 109 (109)
Q Consensus 101 ~~~~~~~~w 109 (109)
.+++....|
T Consensus 81 ~S~~~i~~w 89 (200)
T smart00176 81 VTYKNVPNW 89 (200)
T ss_pred HHHHHHHHH
Confidence 887765555
No 94
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.52 E-value=6.9e-14 Score=95.17 Aligned_cols=85 Identities=22% Similarity=0.327 Sum_probs=69.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCccc--ccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLV--QHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~--~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
+|+++|+.|||||||++.+.+.++. +..||.+.+. ..+.+++ ..+.+||.+|+++++..+..+++++++++.++
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 81 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLY 81 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEE
Confidence 6899999999999999999987763 4567765443 2356665 57789999999999999999999999999999
Q ss_pred eCCCccccccc
Q 033893 96 KIEFRDFYEVE 106 (109)
Q Consensus 96 ~~~~~~~~~~~ 106 (109)
|.+...+++..
T Consensus 82 D~~~~~s~~~~ 92 (191)
T cd04112 82 DITNKASFDNI 92 (191)
T ss_pred ECCCHHHHHHH
Confidence 99877666543
No 95
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.51 E-value=6.4e-14 Score=97.13 Aligned_cols=89 Identities=24% Similarity=0.429 Sum_probs=71.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCce--EEEEE-CC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTS--EELSI-GK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~--g~i~~-~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
-+|+++|++|+|||||++.+.+.++. ...||.+.+. ..+.+ ++ +.+.+||++|++++..++..|++++++++++
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv 82 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLV 82 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEE
Confidence 57899999999999999999988774 4556765432 34444 23 6788999999999999999999999999999
Q ss_pred EeCCCccccccccCC
Q 033893 95 KKIEFRDFYEVEIFW 109 (109)
Q Consensus 95 ~~~~~~~~~~~~~~w 109 (109)
+|++...+++....|
T Consensus 83 ~D~~~~~Sf~~l~~~ 97 (211)
T cd04111 83 FDITNRESFEHVHDW 97 (211)
T ss_pred EECCCHHHHHHHHHH
Confidence 999887776654433
No 96
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.51 E-value=8e-14 Score=91.47 Aligned_cols=85 Identities=24% Similarity=0.439 Sum_probs=69.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
+|+++|++|||||||++.+.+.++ ....|+.+.+ ...+.+++ ..+.+||.+|++++...++.+++++++++.+++
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d 81 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYD 81 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEE
Confidence 689999999999999999998776 3455655533 34566666 578899999999999999999999999999999
Q ss_pred CCCccccccc
Q 033893 97 IEFRDFYEVE 106 (109)
Q Consensus 97 ~~~~~~~~~~ 106 (109)
.+...+++..
T Consensus 82 ~~~~~s~~~~ 91 (164)
T smart00175 82 ITNRESFENL 91 (164)
T ss_pred CCCHHHHHHH
Confidence 8877666543
No 97
>PLN03118 Rab family protein; Provisional
Probab=99.51 E-value=8.5e-14 Score=96.11 Aligned_cols=86 Identities=23% Similarity=0.393 Sum_probs=71.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
..+|+++|.+|+|||||++++.+..+....|+.+.+ ...+.+++ +.+.+||++|+++++.++..|++++++++.++
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~ 93 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVY 93 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEE
Confidence 357899999999999999999988777777776643 34556665 57789999999999999999999999999999
Q ss_pred eCCCcccccc
Q 033893 96 KIEFRDFYEV 105 (109)
Q Consensus 96 ~~~~~~~~~~ 105 (109)
|.+...+++.
T Consensus 94 D~~~~~sf~~ 103 (211)
T PLN03118 94 DVTRRETFTN 103 (211)
T ss_pred ECCCHHHHHH
Confidence 9987665554
No 98
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.51 E-value=8.8e-14 Score=92.23 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=67.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
.+|+++|.+|+|||||++.+.+..+ .+..|+.+... ..+..++ ..+.+||++|+++++.+++.+++.+++++++++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 4689999999999999999998877 45667665322 2233333 677899999999999999999999999999999
Q ss_pred CCCcccccc
Q 033893 97 IEFRDFYEV 105 (109)
Q Consensus 97 ~~~~~~~~~ 105 (109)
++...+++.
T Consensus 82 ~~~~~s~~~ 90 (165)
T cd04140 82 VTSKQSLEE 90 (165)
T ss_pred CCCHHHHHH
Confidence 987776654
No 99
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.51 E-value=1.1e-13 Score=92.06 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=69.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
.+++++|.+|||||||++.+.+..+ .++.|+.+.. ...+.+++ ..+.+||.+|+++++.+++.+++++++++++++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~ 81 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS 81 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence 4689999999999999999998776 4566666532 34455665 577899999999999999999999999999999
Q ss_pred CCCcccccc
Q 033893 97 IEFRDFYEV 105 (109)
Q Consensus 97 ~~~~~~~~~ 105 (109)
.+...+++.
T Consensus 82 ~~~~~s~~~ 90 (168)
T cd04177 82 VTSEASLNE 90 (168)
T ss_pred CCCHHHHHH
Confidence 877665554
No 100
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.51 E-value=1.3e-13 Score=90.60 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=69.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
..+++++|++|+|||||++.+.+..+ .+..|+.... ...+.+++ ..+.+||++|+++++.+++.|++++++++.++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 35799999999999999999987765 4556665532 33445666 46778999999999999999999999999999
Q ss_pred eCCCccccccc
Q 033893 96 KIEFRDFYEVE 106 (109)
Q Consensus 96 ~~~~~~~~~~~ 106 (109)
+.+...+++..
T Consensus 82 d~~~~~s~~~~ 92 (164)
T cd04145 82 SVTDRGSFEEV 92 (164)
T ss_pred ECCCHHHHHHH
Confidence 98876655543
No 101
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.51 E-value=1.1e-14 Score=101.45 Aligned_cols=79 Identities=15% Similarity=0.208 Sum_probs=60.9
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK 87 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~ 87 (109)
.+|+++++++++|++ +|+||||||||||||||.+. ..++.|+|.++|..+..-. ..+ ...
T Consensus 16 ~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L--------E~~~~G~I~i~g~~~~~~~-----~~~----~~R-- 76 (240)
T COG1126 16 EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL--------EEPDSGSITVDGEDVGDKK-----DIL----KLR-- 76 (240)
T ss_pred EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC--------cCCCCceEEECCEeccchh-----hHH----HHH--
Confidence 478999999999997 99999999999999999999 8899999999997664111 111 111
Q ss_pred CCEEEEEEeCCCccccccc
Q 033893 88 VIGSFKTKKIEFRDFYEVE 106 (109)
Q Consensus 88 ~~~~v~~~~~~~~~~~~~~ 106 (109)
...-++++.+++|+|+++.
T Consensus 77 ~~vGmVFQ~fnLFPHlTvl 95 (240)
T COG1126 77 RKVGMVFQQFNLFPHLTVL 95 (240)
T ss_pred HhcCeecccccccccchHH
Confidence 2344566777888888763
No 102
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.51 E-value=8e-14 Score=99.07 Aligned_cols=85 Identities=18% Similarity=0.179 Sum_probs=70.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCccc-ccCCccc-CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQH-PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI 97 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~-~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~ 97 (109)
+|+++|..|+|||||++.+.+.++. .+.||.. +....+.+++ +.+.+||++|++.++.+++.|+.+++++++++++
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv 81 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSL 81 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeC
Confidence 6899999999999999999877774 5678775 3345567776 6778999999999988888899999999999999
Q ss_pred CCccccccc
Q 033893 98 EFRDFYEVE 106 (109)
Q Consensus 98 ~~~~~~~~~ 106 (109)
+...+++..
T Consensus 82 ~~~~Sf~~i 90 (247)
T cd04143 82 DNRESFEEV 90 (247)
T ss_pred CCHHHHHHH
Confidence 887776543
No 103
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.51 E-value=1e-13 Score=91.21 Aligned_cols=85 Identities=26% Similarity=0.452 Sum_probs=68.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
+++++|++|+|||||++.+.+.++ ....|+.+.+ .-.+.+++ ..+.+||.+|+++++..++.+++++++++.+++
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d 81 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYD 81 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEE
Confidence 689999999999999999998776 3455555433 23455555 577899999999999999999999999999999
Q ss_pred CCCccccccc
Q 033893 97 IEFRDFYEVE 106 (109)
Q Consensus 97 ~~~~~~~~~~ 106 (109)
.+...+++..
T Consensus 82 ~~~~~s~~~~ 91 (161)
T cd04113 82 ITNRTSFEAL 91 (161)
T ss_pred CCCHHHHHHH
Confidence 9887666543
No 104
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.50 E-value=7.2e-14 Score=94.23 Aligned_cols=84 Identities=19% Similarity=0.215 Sum_probs=69.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEEC-C--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIG-K--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~-~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
+|+++|++|+|||||++.+.+..+ .++.||...+ ...+... + ..+.+||++|++++..+++.+++++++++++++
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d 81 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYA 81 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEE
Confidence 689999999999999999998877 4567776543 2345554 3 578899999999999999999999999999999
Q ss_pred CCCcccccc
Q 033893 97 IEFRDFYEV 105 (109)
Q Consensus 97 ~~~~~~~~~ 105 (109)
.+...+++.
T Consensus 82 ~~~~~s~~~ 90 (187)
T cd04132 82 VDNPTSLDN 90 (187)
T ss_pred CCCHHHHHH
Confidence 987776654
No 105
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.50 E-value=1.2e-13 Score=91.90 Aligned_cols=88 Identities=24% Similarity=0.377 Sum_probs=69.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
-+|+++|.+|+|||||++.+.+.++. ...|+.+.+ ...+..++ ..+.+||.+|+++++.++..+++++++++.++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~ 84 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 84 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 47899999999999999999987763 344555433 33455555 57889999999999999999999999999999
Q ss_pred eCCCccccccccC
Q 033893 96 KIEFRDFYEVEIF 108 (109)
Q Consensus 96 ~~~~~~~~~~~~~ 108 (109)
|.+...+++....
T Consensus 85 d~~~~~s~~~~~~ 97 (168)
T cd01866 85 DITRRETFNHLTS 97 (168)
T ss_pred ECCCHHHHHHHHH
Confidence 9987666655433
No 106
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.50 E-value=1.3e-13 Score=91.21 Aligned_cols=84 Identities=17% Similarity=0.322 Sum_probs=66.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
+|+++|++|||||||++++.+.++. ...|+.+.+ ...+.+++ ..+.+||.+|++.+..+|..+++++++++.+++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 81 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 81 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEE
Confidence 6899999999999999999987653 444555433 34566666 456689999999999999999999999999999
Q ss_pred CCCcccccc
Q 033893 97 IEFRDFYEV 105 (109)
Q Consensus 97 ~~~~~~~~~ 105 (109)
.....+++.
T Consensus 82 ~~~~~~~~~ 90 (172)
T cd01862 82 VTNPKSFES 90 (172)
T ss_pred CCCHHHHHH
Confidence 876655443
No 107
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.50 E-value=1e-13 Score=91.34 Aligned_cols=85 Identities=14% Similarity=0.204 Sum_probs=67.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC--cc-cccCCcccCceE--EEEEC---CEEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 22 KILFLGLDNAGKTTLLHMLKDE--RL-VQHQPTQHPTSE--ELSIG---KIKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~--~~-~~~~pt~~~~~g--~i~~~---~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
+|+++|.+|||||||++.+... .+ .++.||.+++.. .+.++ ...+.+||.+|+++++.+++.++.++++++.
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFIL 81 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence 6899999999999999999854 45 456677665432 33332 3788899999999999999999999999999
Q ss_pred EEeCCCccccccc
Q 033893 94 TKKIEFRDFYEVE 106 (109)
Q Consensus 94 ~~~~~~~~~~~~~ 106 (109)
+++.+...+++..
T Consensus 82 v~d~~~~~s~~~~ 94 (164)
T cd04101 82 VYDVSNKASFENC 94 (164)
T ss_pred EEECcCHHHHHHH
Confidence 9999877665543
No 108
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.50 E-value=2e-13 Score=90.84 Aligned_cols=84 Identities=19% Similarity=0.272 Sum_probs=69.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
.+|+++|++|||||||++.+.+.++ ..+.||.... ...+.+++ ..+.+||++|+++++.+++.++.++++++.+++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 4789999999999999999998877 4577777643 35667766 467899999999999998889999999999999
Q ss_pred CCCccccc
Q 033893 97 IEFRDFYE 104 (109)
Q Consensus 97 ~~~~~~~~ 104 (109)
++...+++
T Consensus 82 ~~~~~s~~ 89 (175)
T cd01870 82 IDSPDSLE 89 (175)
T ss_pred CCCHHHHH
Confidence 87665543
No 109
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.49 E-value=3.5e-14 Score=93.82 Aligned_cols=88 Identities=20% Similarity=0.342 Sum_probs=75.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
+.+|+|.+|+|||+|+..+...-| .+++.|++. ...++.++| +++.+||.+|++++|.+...||+..++++++||
T Consensus 10 kllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYD 89 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD 89 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEE
Confidence 357999999999999999998766 467777764 456777776 678899999999999999999999999999999
Q ss_pred CCCccccccccCC
Q 033893 97 IEFRDFYEVEIFW 109 (109)
Q Consensus 97 ~~~~~~~~~~~~w 109 (109)
++.-.++....+|
T Consensus 90 VTn~ESF~Nv~rW 102 (198)
T KOG0079|consen 90 VTNGESFNNVKRW 102 (198)
T ss_pred CcchhhhHhHHHH
Confidence 9998888776666
No 110
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.49 E-value=9.4e-15 Score=104.26 Aligned_cols=61 Identities=28% Similarity=0.421 Sum_probs=52.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCccccccc
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRV 80 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~ 80 (109)
++++++|++++|++ +|+|||||||||||++++|. ..|..|+|.++|.++. +++..+..+.+
T Consensus 17 il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~--------l~p~~G~V~l~g~~i~--~~~~kelAk~i 78 (258)
T COG1120 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL--------LKPKSGEVLLDGKDIA--SLSPKELAKKL 78 (258)
T ss_pred EEecceEEecCCcEEEEECCCCCCHHHHHHHHhcc--------CCCCCCEEEECCCchh--hcCHHHHhhhE
Confidence 67899999999997 99999999999999999998 8899999999999887 55555544443
No 111
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.48 E-value=7.3e-14 Score=96.21 Aligned_cols=85 Identities=27% Similarity=0.357 Sum_probs=66.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc-eE-EEEEC--CEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT-SE-ELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~-~g-~i~~~--~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
.+|+++|+.|||||||++.+.+..+. ...||.... .+ .+... ...+.+||++|+++++.+|+.|+.++++++.++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 57899999999999999999988774 455665422 22 22222 467889999999999999999999999999999
Q ss_pred eCCCcc-cccc
Q 033893 96 KIEFRD-FYEV 105 (109)
Q Consensus 96 ~~~~~~-~~~~ 105 (109)
+.+.+. +.+.
T Consensus 86 d~~~~~~~~~~ 96 (219)
T COG1100 86 DSTLRESSDEL 96 (219)
T ss_pred ecccchhhhHH
Confidence 987743 4443
No 112
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.48 E-value=3.7e-14 Score=94.97 Aligned_cols=91 Identities=22% Similarity=0.435 Sum_probs=76.2
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcccc-cCCcccCce--EEEEEC-C--EEEEEEEcCCcccccccHHhhhhcCCEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQHPTS--EELSIG-K--IKFKAFDLGGHQIARRVWKDYYAKVIGSF 92 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~-~~pt~~~~~--g~i~~~-~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v 92 (109)
-+.+++++|.+-+|||+||+.++..++++ .-||++.+. .-|.+. | +++.+||.+||+++|++.+.||+|.-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 35678999999999999999999888854 668887442 233332 3 67889999999999999999999999999
Q ss_pred EEEeCCCccccccccCC
Q 033893 93 KTKKIEFRDFYEVEIFW 109 (109)
Q Consensus 93 ~~~~~~~~~~~~~~~~w 109 (109)
.++|++.+.++++..-|
T Consensus 87 lvyditnr~sfehv~~w 103 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENW 103 (213)
T ss_pred EEEeccchhhHHHHHHH
Confidence 99999999999987655
No 113
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.47 E-value=1.7e-13 Score=88.52 Aligned_cols=84 Identities=25% Similarity=0.399 Sum_probs=67.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccc-cCCcccCceEE--EEEC--CEEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLVQ-HQPTQHPTSEE--LSIG--KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~~-~~pt~~~~~g~--i~~~--~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
+|+++|++|||||||++.+.+..+.. ..||.+.+... +..+ +..+.+||.+|++..+..+..+++++++++.+++
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d 81 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYD 81 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999999887643 46666654433 3333 3778899999999999999999999999999999
Q ss_pred CCCcccccc
Q 033893 97 IEFRDFYEV 105 (109)
Q Consensus 97 ~~~~~~~~~ 105 (109)
.+...+++.
T Consensus 82 ~~~~~~~~~ 90 (159)
T cd00154 82 ITNRESFEN 90 (159)
T ss_pred CCCHHHHHH
Confidence 877655443
No 114
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.47 E-value=2.8e-13 Score=89.63 Aligned_cols=84 Identities=21% Similarity=0.308 Sum_probs=66.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
.+++++|++|||||||++.+.+..+. ...|+.+ +....+.+++ ..+.+||.+|++.++..+..+++++++++.++
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 87 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTY 87 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 56899999999999999999976553 3455554 3344667777 45778999999999999999999999999999
Q ss_pred eCCCccccc
Q 033893 96 KIEFRDFYE 104 (109)
Q Consensus 96 ~~~~~~~~~ 104 (109)
+.+..++++
T Consensus 88 d~~~~~s~~ 96 (169)
T cd04114 88 DITCEESFR 96 (169)
T ss_pred ECcCHHHHH
Confidence 987665544
No 115
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.47 E-value=2.1e-13 Score=91.16 Aligned_cols=84 Identities=14% Similarity=0.157 Sum_probs=68.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc-CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH-PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI 97 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~-~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~ 97 (109)
+++++|++|+|||||++.+.+..+ .++.||.. .....+.+++ +.+.+||.+|+++++.+++.+++++++++.+++.
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~ 81 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSV 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEEC
Confidence 689999999999999999987666 45666642 1224566666 5677899999999999999999999999999999
Q ss_pred CCcccccc
Q 033893 98 EFRDFYEV 105 (109)
Q Consensus 98 ~~~~~~~~ 105 (109)
+...+++.
T Consensus 82 ~~~~sf~~ 89 (173)
T cd04130 82 VNPSSFQN 89 (173)
T ss_pred CCHHHHHH
Confidence 88776654
No 116
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.46 E-value=3.7e-13 Score=88.40 Aligned_cols=84 Identities=24% Similarity=0.386 Sum_probs=67.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
+++++|++|||||||++++.+..+. ...|+.+.+ ...+.+++ ..+.+||.+|++++...++.+++++++++++++
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 81 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYD 81 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEE
Confidence 6899999999999999999987763 466666543 34455555 678899999999999999999999999999999
Q ss_pred CCCcccccc
Q 033893 97 IEFRDFYEV 105 (109)
Q Consensus 97 ~~~~~~~~~ 105 (109)
.+...+++.
T Consensus 82 ~~~~~s~~~ 90 (161)
T cd01863 82 VTRRDTFTN 90 (161)
T ss_pred CCCHHHHHh
Confidence 877665544
No 117
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.46 E-value=2.1e-13 Score=90.66 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=67.6
Q ss_pred EEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893 23 ILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE 98 (109)
Q Consensus 23 i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~ 98 (109)
|+++|++|+|||||++.+.+..+ ..+.|+.... ...+.+++ +.+.+||++|+++++.+++.++.++++++.+++.+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 47999999999999999998877 4456665432 23566666 46789999999999999999999999999999998
Q ss_pred Ccccccc
Q 033893 99 FRDFYEV 105 (109)
Q Consensus 99 ~~~~~~~ 105 (109)
...+++.
T Consensus 81 ~~~s~~~ 87 (174)
T smart00174 81 SPASFEN 87 (174)
T ss_pred CHHHHHH
Confidence 7766654
No 118
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.45 E-value=3.2e-13 Score=92.41 Aligned_cols=84 Identities=15% Similarity=0.214 Sum_probs=68.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCccc-ccCCccc-CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQH-PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI 97 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~-~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~ 97 (109)
+|+++|.+|+|||||++.+.+..+. .+.|+.. .....+.+++ ..+.+||++|+..++.+++.|+.++++++++++.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 5799999999999999999987764 3455543 3345667777 5788999999999999999999999999999998
Q ss_pred CCcccccc
Q 033893 98 EFRDFYEV 105 (109)
Q Consensus 98 ~~~~~~~~ 105 (109)
+...+++.
T Consensus 81 ~~~~s~~~ 88 (198)
T cd04147 81 DDPESFEE 88 (198)
T ss_pred CCHHHHHH
Confidence 77655553
No 119
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.45 E-value=7.4e-14 Score=98.01 Aligned_cols=81 Identities=21% Similarity=0.256 Sum_probs=60.2
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK 87 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~ 87 (109)
.+|+++++++++|++ +|+|||||||||||+++.+. ..|+.|.+.++|.++. .+...+ ..-++.
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l--------d~pt~G~v~i~g~d~~--~l~~~~------~~~~R~ 82 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL--------DKPTSGEVLINGKDLT--KLSEKE------LAKLRR 82 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------cCCCCceEEECCEEcC--cCCHHH------HHHHHH
Confidence 578999999999996 99999999999999999999 7889999999998776 332222 123344
Q ss_pred CCEEEEEEeCCCcccccc
Q 033893 88 VIGSFKTKKIEFRDFYEV 105 (109)
Q Consensus 88 ~~~~v~~~~~~~~~~~~~ 105 (109)
-+.-++++++.+-+.+++
T Consensus 83 ~~iGfvFQ~~nLl~~ltv 100 (226)
T COG1136 83 KKIGFVFQNFNLLPDLTV 100 (226)
T ss_pred HhEEEECccCCCCCCCCH
Confidence 455555555555554443
No 120
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.44 E-value=1.5e-13 Score=93.36 Aligned_cols=89 Identities=17% Similarity=0.294 Sum_probs=75.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
-+|+|+|.+|.|||+|++.+...+|. .+--|++ |-.-++.+++ ..+.+||++||++++++--.||+.+|+.+.++
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvy 89 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 89 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEe
Confidence 36899999999999999999977763 4545565 4557888887 56779999999999999999999999999999
Q ss_pred eCCCccccccccCC
Q 033893 96 KIEFRDFYEVEIFW 109 (109)
Q Consensus 96 ~~~~~~~~~~~~~w 109 (109)
+++..++++....|
T Consensus 90 dv~~~~Sfe~L~~W 103 (210)
T KOG0394|consen 90 DVNNPKSFENLENW 103 (210)
T ss_pred ecCChhhhccHHHH
Confidence 99999888876655
No 121
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.44 E-value=6.2e-13 Score=89.06 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=68.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccC-ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHP-TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~-~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
.+|+|+|++|+|||||++.+.+.++. ...|+... ....+.+++ ..+.+||++|+++++.+|..++..+++++++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 47899999999999999999987763 46676543 245566665 456789999999999999999999999999999
Q ss_pred CCCcccccc
Q 033893 97 IEFRDFYEV 105 (109)
Q Consensus 97 ~~~~~~~~~ 105 (109)
.+...+++.
T Consensus 82 ~~~~~~~~~ 90 (180)
T cd04137 82 VTSRKSFEV 90 (180)
T ss_pred CCCHHHHHH
Confidence 887665443
No 122
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.43 E-value=7.1e-13 Score=86.53 Aligned_cols=84 Identities=23% Similarity=0.402 Sum_probs=66.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
+++++|++|+|||||++.+.+..+. ...|+.... ...+...+ ..+.+||.+|++.++.+++.++.++++++.+++
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYD 81 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEE
Confidence 6899999999999999999987763 344444332 34455544 468899999999999999999999999999999
Q ss_pred CCCcccccc
Q 033893 97 IEFRDFYEV 105 (109)
Q Consensus 97 ~~~~~~~~~ 105 (109)
.+...+++.
T Consensus 82 ~~~~~s~~~ 90 (162)
T cd04123 82 ITDADSFQK 90 (162)
T ss_pred CCCHHHHHH
Confidence 877765543
No 123
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.42 E-value=1.4e-12 Score=86.71 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=67.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI 97 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~ 97 (109)
+|+++|++|+|||||++.+.+.++ ..+.|+.... .-.+.+++ +.+.+||.+|++.++..++.+++.+++++.+++.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~ 81 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSV 81 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEEC
Confidence 689999999999999999998876 4566765422 23566666 4567899999999999999999999999999998
Q ss_pred CCcccccc
Q 033893 98 EFRDFYEV 105 (109)
Q Consensus 98 ~~~~~~~~ 105 (109)
+...+++.
T Consensus 82 ~~~~s~~~ 89 (174)
T cd04135 82 VNPASFQN 89 (174)
T ss_pred CCHHHHHH
Confidence 77765543
No 124
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.41 E-value=1e-12 Score=86.91 Aligned_cols=86 Identities=20% Similarity=0.212 Sum_probs=65.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc-CceEEEEECCE--EEEEEEcCCccc-ccccHHhhhhcCCEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH-PTSEELSIGKI--KFKAFDLGGHQI-ARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~-~~~g~i~~~~~--~i~~~d~~g~~~-~r~~~~~~~~~~~~~v~~~~ 96 (109)
+|+++|++|+|||||++.+....+ .++.|+.. .....+.+++. .+.+||.+|+++ ....+..++++++++++++|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 479999999999999999887666 34556553 22345566664 577999999885 35567889999999999999
Q ss_pred CCCcccccccc
Q 033893 97 IEFRDFYEVEI 107 (109)
Q Consensus 97 ~~~~~~~~~~~ 107 (109)
.+...+++...
T Consensus 81 ~~~~~s~~~~~ 91 (165)
T cd04146 81 ITDRSSFDEIS 91 (165)
T ss_pred CCCHHHHHHHH
Confidence 98877766443
No 125
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.41 E-value=2.7e-13 Score=85.26 Aligned_cols=84 Identities=19% Similarity=0.240 Sum_probs=61.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCccc---ccCCcccCce--EEEEEC--CEEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLV---QHQPTQHPTS--EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~---~~~pt~~~~~--g~i~~~--~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
||+++|+.|||||||++.+.+.... ...++.+... ...... ...+.+||.+|++.....++.++.++++++++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 6899999999999999999987654 1222222222 123333 34678999999998888888889999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
+|.+...+++.
T Consensus 81 ~D~s~~~s~~~ 91 (119)
T PF08477_consen 81 YDLSDPESLEY 91 (119)
T ss_dssp EECCGHHHHHH
T ss_pred EcCCChHHHHH
Confidence 99987776654
No 126
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=7e-13 Score=87.30 Aligned_cols=88 Identities=24% Similarity=0.409 Sum_probs=73.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEE--EEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEE--LSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~--i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
+.+|+|.-|+|||.||+.+...+| .++.-|++...|+ |.+.| +++.+||.+|++++|.+.+.||+.+.+.+.+++
T Consensus 13 kyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyd 92 (215)
T KOG0097|consen 13 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 92 (215)
T ss_pred EEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEE
Confidence 458999999999999999998876 5666667654443 55556 567799999999999999999999999999999
Q ss_pred CCCccccccccCC
Q 033893 97 IEFRDFYEVEIFW 109 (109)
Q Consensus 97 ~~~~~~~~~~~~w 109 (109)
++.+..+.+...|
T Consensus 93 itrrstynhlssw 105 (215)
T KOG0097|consen 93 ITRRSTYNHLSSW 105 (215)
T ss_pred ehhhhhhhhHHHH
Confidence 9988877766555
No 127
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.40 E-value=1.2e-12 Score=90.44 Aligned_cols=79 Identities=20% Similarity=0.277 Sum_probs=65.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC----CEEEEEEEcCCcccccccHHhhhhcC-CEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG----KIKFKAFDLGGHQIARRVWKDYYAKV-IGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~----~~~i~~~d~~g~~~~r~~~~~~~~~~-~~~v~~~~ 96 (109)
.|+|+|++|||||+|++.+...++..+.|+..++....... +..+.+||.+|+++++..+..|++++ +++|.+.|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 57999999999999999999887755555555555655553 57889999999999999999999998 99999998
Q ss_pred CCCc
Q 033893 97 IEFR 100 (109)
Q Consensus 97 ~~~~ 100 (109)
.+..
T Consensus 82 ~~~~ 85 (203)
T cd04105 82 SATF 85 (203)
T ss_pred Cccc
Confidence 8665
No 128
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.40 E-value=2.4e-13 Score=95.94 Aligned_cols=79 Identities=19% Similarity=0.244 Sum_probs=60.5
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK 87 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~ 87 (109)
.++++|+|++.+|++ +|+|+||||||||.+++.|. ..++.|+|.++|..+. ...+. +.+++.
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl--------~~p~~G~I~~~G~~~~-----~~~~~----~~~~~~ 83 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL--------EKPSSGSILLDGKPLA-----PKKRA----KAFYRP 83 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcc--------cCCCCceEEECCcccC-----ccccc----hhhccc
Confidence 689999999999997 99999999999999999999 8889999999997654 11111 145556
Q ss_pred CCEEEEEEeCCCccccc
Q 033893 88 VIGSFKTKKIEFRDFYE 104 (109)
Q Consensus 88 ~~~~v~~~~~~~~~~~~ 104 (109)
+..+.+.+.-++.|+.+
T Consensus 84 VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 84 VQMVFQDPYSSLNPRRT 100 (252)
T ss_pred eeEEecCCccccCcchh
Confidence 66666655555555443
No 129
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.39 E-value=2.7e-13 Score=95.92 Aligned_cols=52 Identities=25% Similarity=0.409 Sum_probs=47.3
Q ss_pred HHHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 8 YGILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 8 ~~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
..+|+++++++.+|++ +|+|+||||||||||.++|. ..++.|+|.++|..+.
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL--------~~p~~G~V~~~g~~v~ 68 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL--------EKPTSGEVLLDGRPVT 68 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCcccC
Confidence 3578999999999996 99999999999999999999 8899999999988763
No 130
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.39 E-value=1.8e-12 Score=87.92 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=66.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
.+++++|++|+|||||++++....+ .+..|+.... ...+.+++ ..+.+||.+|++.++...+.+++++++++.+++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 4789999999999999999986655 3455655432 34556665 457789999998888877788899999999999
Q ss_pred CCCccccccc
Q 033893 97 IEFRDFYEVE 106 (109)
Q Consensus 97 ~~~~~~~~~~ 106 (109)
++...+++..
T Consensus 82 i~~~~s~~~~ 91 (187)
T cd04129 82 VDTPDSLENV 91 (187)
T ss_pred CCCHHHHHHH
Confidence 9877666543
No 131
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.38 E-value=8.9e-14 Score=96.86 Aligned_cols=55 Identities=27% Similarity=0.474 Sum_probs=50.4
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEc
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDL 71 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~ 71 (109)
.+|++++++.++|++ +|+|||||||||||+.|+|. ..|+.|++.++|..+..|..
T Consensus 15 ~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe--------l~p~~G~v~~~g~~l~~~~~ 70 (259)
T COG4559 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE--------LSPDSGEVTLNGVPLNSWPP 70 (259)
T ss_pred eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCc--------cCCCCCeEeeCCcChhhCCH
Confidence 367899999999998 99999999999999999999 88999999999999987753
No 132
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.38 E-value=2e-12 Score=84.25 Aligned_cols=84 Identities=17% Similarity=0.241 Sum_probs=66.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc-CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH-PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI 97 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~-~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~ 97 (109)
+|+++|++|||||||++++.+..+ ....|+.. .....+..++ ..+.+||.+|.+.+...+..+++.+++++.+++.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 479999999999999999997765 34555544 2234455563 6788999999999999999999999999999998
Q ss_pred CCcccccc
Q 033893 98 EFRDFYEV 105 (109)
Q Consensus 98 ~~~~~~~~ 105 (109)
+...+++.
T Consensus 81 ~~~~s~~~ 88 (160)
T cd00876 81 TDRESFEE 88 (160)
T ss_pred CCHHHHHH
Confidence 77655443
No 133
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.38 E-value=5.7e-13 Score=96.86 Aligned_cols=51 Identities=25% Similarity=0.419 Sum_probs=46.1
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+++++++.++.+++ +++|||||||||||++|+|. ..|+.|.|.+++..+.
T Consensus 16 ~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGL--------e~p~~G~I~~~~~~l~ 67 (345)
T COG1118 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGL--------ETPDAGRIRLNGRVLF 67 (345)
T ss_pred cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCc--------CCCCCceEEECCEecc
Confidence 457789999999996 99999999999999999999 8899999999998443
No 134
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.37 E-value=1.9e-12 Score=85.91 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=64.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCce-EEEEE--CCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTS-EELSI--GKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE 98 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~-g~i~~--~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~ 98 (109)
+++++|.+|||||||++.+.+.++....|+..... -.+.+ .+..+.+||++|.+..+..+..++..+++++++++.+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~ 81 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVD 81 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECC
Confidence 68999999999999999999887754444332221 11223 3478889999999988888888899999999999988
Q ss_pred Ccccccc
Q 033893 99 FRDFYEV 105 (109)
Q Consensus 99 ~~~~~~~ 105 (109)
...+++.
T Consensus 82 ~~~s~~~ 88 (166)
T cd01893 82 RPSTLER 88 (166)
T ss_pred CHHHHHH
Confidence 7666654
No 135
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=4.5e-13 Score=94.01 Aligned_cols=63 Identities=25% Similarity=0.348 Sum_probs=54.2
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccc
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARR 79 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~ 79 (109)
.+|+.++++++++++ +|+||||||||||.+.|+|. |......|+|.++|.++. ++...++.|.
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~------p~Y~Vt~G~I~~~GedI~--~l~~~ERAr~ 81 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH------PKYEVTEGEILFDGEDIL--ELSPDERARA 81 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCC------CCceEecceEEECCcccc--cCCHhHHHhc
Confidence 588999999999999 99999999999999999998 334567899999999888 7766666554
No 136
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.36 E-value=3.7e-12 Score=83.35 Aligned_cols=83 Identities=14% Similarity=0.267 Sum_probs=65.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI 97 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~ 97 (109)
+|+++|++|||||||++.+....+ ....|+..... ..+.+++ ..+.+||.+|++.+...+..+++.+++++.++++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 81 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSI 81 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999999999999999998776 34555554322 3345554 5788899999999999999999999999999998
Q ss_pred CCccccc
Q 033893 98 EFRDFYE 104 (109)
Q Consensus 98 ~~~~~~~ 104 (109)
+...+++
T Consensus 82 ~~~~s~~ 88 (164)
T cd04139 82 TDMESFT 88 (164)
T ss_pred CCHHHHH
Confidence 7665543
No 137
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.35 E-value=5.4e-14 Score=99.13 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=47.8
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.++++++|+++++++ +|+|||||||||++|+++|. ..|+.|+|.++|.++.
T Consensus 18 ~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~--------~~P~~G~v~~~G~~it 69 (250)
T COG0411 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGF--------YKPSSGTVIFRGRDIT 69 (250)
T ss_pred EEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccc--------ccCCCceEEECCcccC
Confidence 368899999999998 99999999999999999999 8999999999999777
No 138
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.34 E-value=3.1e-13 Score=96.32 Aligned_cols=72 Identities=28% Similarity=0.460 Sum_probs=56.8
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK 87 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~ 87 (109)
.++++++++++++++ +++|+|||||||+|++|.+. +.++.|+|.++|.++.-+| ..+.-|.+ .|.-+
T Consensus 15 ~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL--------iept~G~I~i~g~~i~~~d--~~~LRr~I--GYviQ 82 (309)
T COG1125 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL--------IEPTSGEILIDGEDISDLD--PVELRRKI--GYVIQ 82 (309)
T ss_pred eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcc--------cCCCCceEEECCeecccCC--HHHHHHhh--hhhhh
Confidence 468899999999997 99999999999999999999 9999999999999988444 33322332 45544
Q ss_pred CCEEE
Q 033893 88 VIGSF 92 (109)
Q Consensus 88 ~~~~v 92 (109)
-.+++
T Consensus 83 qigLF 87 (309)
T COG1125 83 QIGLF 87 (309)
T ss_pred hcccC
Confidence 44433
No 139
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.34 E-value=9.2e-13 Score=89.68 Aligned_cols=51 Identities=27% Similarity=0.401 Sum_probs=46.0
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+|++++++++++++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--------~~~~~G~i~~~g~~~~ 57 (190)
T TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGL--------LRPQSGAVLIDGEPLD 57 (190)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceeEEECCEEcc
Confidence 368999999999986 99999999999999999998 7788999999987663
No 140
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.34 E-value=7.5e-13 Score=91.65 Aligned_cols=53 Identities=28% Similarity=0.352 Sum_probs=48.6
Q ss_pred HHHHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 7 FYGILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 7 ~~~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.-+++++++|+.++|+| +++|+|||||||+|+.|++. ..|+.|.+.+++++..
T Consensus 14 ~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl--------L~P~~G~v~idg~d~~ 67 (245)
T COG4555 14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATL--------LIPDSGKVTIDGVDTV 67 (245)
T ss_pred HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHh--------ccCCCceEEEeecccc
Confidence 34689999999999998 99999999999999999999 8999999999987665
No 141
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.34 E-value=7.6e-13 Score=96.18 Aligned_cols=51 Identities=31% Similarity=0.363 Sum_probs=46.8
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+|++++|++++|++ +++|+|||||||++++|+|. ..++.|+|.++|.+..
T Consensus 19 ~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl--------~~p~~G~i~i~G~~~~ 70 (293)
T COG1131 19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL--------LKPTSGEILVLGYDVV 70 (293)
T ss_pred EEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC--------cCCCceEEEEcCEeCc
Confidence 378999999999997 99999999999999999999 8889999999987654
No 142
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.34 E-value=1.1e-12 Score=100.76 Aligned_cols=54 Identities=26% Similarity=0.346 Sum_probs=49.7
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD 70 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d 70 (109)
.+|++++|++.+|+| +|+|+||||||||+|.|+|. ..|+.|+|.++|..+...+
T Consensus 22 ~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv--------~~p~~G~I~~~G~~~~~~s 76 (500)
T COG1129 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGV--------YPPDSGEILIDGKPVAFSS 76 (500)
T ss_pred eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCc--------ccCCCceEEECCEEccCCC
Confidence 579999999999998 99999999999999999999 8899999999998877543
No 143
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.33 E-value=6.5e-12 Score=83.00 Aligned_cols=79 Identities=18% Similarity=0.214 Sum_probs=58.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCccc--c-cCCcccCceEEEEECCE-EEEEEEcCCcc----cccccHHhhhh---cCCE
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLV--Q-HQPTQHPTSEELSIGKI-KFKAFDLGGHQ----IARRVWKDYYA---KVIG 90 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~--~-~~pt~~~~~g~i~~~~~-~i~~~d~~g~~----~~r~~~~~~~~---~~~~ 90 (109)
.|+++|.+|||||||+++|.+.+.. . ..+|..+..+.+.+++. .+.+||++|.. ..+.+...|++ ++++
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 5899999999999999999976531 1 22345566777877776 99999999963 22334445544 5999
Q ss_pred EEEEEeCCCc
Q 033893 91 SFKTKKIEFR 100 (109)
Q Consensus 91 ~v~~~~~~~~ 100 (109)
++.++|.+..
T Consensus 82 vi~v~D~~~~ 91 (170)
T cd01898 82 LLHVIDLSGD 91 (170)
T ss_pred EEEEEecCCC
Confidence 9999998765
No 144
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.33 E-value=6e-13 Score=93.24 Aligned_cols=51 Identities=27% Similarity=0.352 Sum_probs=47.6
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++|+++++++++++| +++|+|||||||++++|+|. ..+..|+|.++|.++.
T Consensus 17 ~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl--------~~~~~G~I~~~G~dit 68 (237)
T COG0410 17 QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGL--------VRPRSGRIIFDGEDIT 68 (237)
T ss_pred eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCeeEEECCeecC
Confidence 578999999999997 99999999999999999999 8888899999999887
No 145
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.33 E-value=1.7e-11 Score=78.53 Aligned_cols=80 Identities=26% Similarity=0.382 Sum_probs=64.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
.+|+++|.+|||||||++.+.+.++ .+..|+.+.+. ..+..++ +.+.+||.+|+.+.+..|..++++++..+.+.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 4789999999999999999998774 34445554333 3467777 77889999999999999999999999999888
Q ss_pred eCCCc
Q 033893 96 KIEFR 100 (109)
Q Consensus 96 ~~~~~ 100 (109)
++...
T Consensus 82 d~~~~ 86 (161)
T TIGR00231 82 DIVIL 86 (161)
T ss_pred EEeee
Confidence 87544
No 146
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.32 E-value=8.9e-12 Score=85.73 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=63.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc--eEEEEECC--EEEEEEEcCCcccc----ccc----HHhhhhcC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIA----RRV----WKDYYAKV 88 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~----r~~----~~~~~~~~ 88 (109)
+|+++|.+|+|||||++.+.+.++. .+.||.+.+ ...+.+++ +.+.+||++|.+++ ... ...+++++
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~a 81 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNS 81 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccC
Confidence 6899999999999999999988774 567776533 24567777 56779999886532 111 23457899
Q ss_pred CEEEEEEeCCCccccccc
Q 033893 89 IGSFKTKKIEFRDFYEVE 106 (109)
Q Consensus 89 ~~~v~~~~~~~~~~~~~~ 106 (109)
|++++++|.+...+++..
T Consensus 82 d~iilv~D~~~~~S~~~~ 99 (198)
T cd04142 82 RAFILVYDICSPDSFHYV 99 (198)
T ss_pred CEEEEEEECCCHHHHHHH
Confidence 999999999887776654
No 147
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.32 E-value=1.1e-12 Score=90.81 Aligned_cols=51 Identities=25% Similarity=0.414 Sum_probs=45.9
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 18 ~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl--------~~~~~G~i~~~g~~~~ 69 (218)
T cd03255 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL--------DRPTSGEVRVDGTDIS 69 (218)
T ss_pred eEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC--------cCCCceeEEECCEehh
Confidence 368899999999986 99999999999999999998 7788999999987654
No 148
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=1.7e-12 Score=89.76 Aligned_cols=50 Identities=30% Similarity=0.424 Sum_probs=45.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|.|. ..++.|+|.+++.++.
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~p~~G~i~~~g~~~~ 65 (213)
T cd03259 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL--------ERPDSGEILIDGRDVT 65 (213)
T ss_pred eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCeEEEECCEEcC
Confidence 68899999999986 99999999999999999998 7788999999987654
No 149
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.31 E-value=5.4e-13 Score=97.02 Aligned_cols=57 Identities=25% Similarity=0.338 Sum_probs=50.8
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCC
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGG 73 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g 73 (109)
.+|+++++++++|+| +|+|.||||||||+|++.+. ..|+.|+|.++|.++...+-.+
T Consensus 20 ~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L--------e~PtsG~v~v~G~di~~l~~~~ 77 (339)
T COG1135 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL--------ERPTSGSVFVDGQDLTALSEAE 77 (339)
T ss_pred eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc--------CCCCCceEEEcCEecccCChHH
Confidence 478999999999998 99999999999999999999 8899999999999888544333
No 150
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.31 E-value=1.4e-12 Score=89.89 Aligned_cols=50 Identities=30% Similarity=0.460 Sum_probs=45.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.+++.++.
T Consensus 16 il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~ 66 (211)
T cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL--------LGPTSGEVLVDGKDLT 66 (211)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--------CCCCCceEEECCEEcc
Confidence 68899999999986 99999999999999999998 7788999999987664
No 151
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=1.3e-12 Score=91.57 Aligned_cols=50 Identities=26% Similarity=0.407 Sum_probs=45.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~p~~G~i~~~g~~~~ 65 (235)
T cd03261 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL--------LRPDSGEVLIDGEDIS 65 (235)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEcc
Confidence 67899999999986 99999999999999999998 7788999999987654
No 152
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.31 E-value=1.2e-11 Score=86.43 Aligned_cols=83 Identities=11% Similarity=0.106 Sum_probs=62.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc--cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhh-cCCEEEEE
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL--VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYA-KVIGSFKT 94 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~--~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~-~~~~~v~~ 94 (109)
+|+++|.+|+|||||++.+.+..+ ..+.|+.+ +...++.+++ ..+.+||++|++ ..+...++. ++++++++
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV 79 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVV 79 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEE
Confidence 689999999999999999976665 45566653 3345666654 678899999988 233345566 89999999
Q ss_pred EeCCCccccccc
Q 033893 95 KKIEFRDFYEVE 106 (109)
Q Consensus 95 ~~~~~~~~~~~~ 106 (109)
++.+...+++..
T Consensus 80 ~d~td~~S~~~~ 91 (221)
T cd04148 80 YSVTDRSSFERA 91 (221)
T ss_pred EECCCHHHHHHH
Confidence 999887766643
No 153
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.31 E-value=1.5e-12 Score=89.62 Aligned_cols=50 Identities=28% Similarity=0.306 Sum_probs=45.2
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
.++++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++
T Consensus 14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~ 64 (205)
T cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL--------IKESSGSILLNGKPI 64 (205)
T ss_pred ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEEh
Confidence 368899999999986 99999999999999999998 778899999998765
No 154
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.31 E-value=1.7e-12 Score=91.37 Aligned_cols=51 Identities=27% Similarity=0.413 Sum_probs=46.5
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+|++|++.+++|+. +|+|+||||||||||++.+. ..++.|+|.+++.++.
T Consensus 18 ~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl--------~d~t~G~i~~~g~~i~ 69 (258)
T COG3638 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL--------VDPTSGEILFNGVQIT 69 (258)
T ss_pred eeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc--------cCCCcceEEecccchh
Confidence 368899999999995 99999999999999999998 8888999999998665
No 155
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.31 E-value=2.2e-11 Score=80.42 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=64.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI 97 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~ 97 (109)
+|+++|++|||||||++++.+..+ ....|+..... ..+..++ ..+.+||.+|++++....+.+++++++++.+++.
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 81 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSV 81 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEEC
Confidence 689999999999999999998876 45556554222 2333343 5788999999998888888888999999999998
Q ss_pred CCccccc
Q 033893 98 EFRDFYE 104 (109)
Q Consensus 98 ~~~~~~~ 104 (109)
+...++.
T Consensus 82 ~~~~s~~ 88 (171)
T cd00157 82 DSPSSFE 88 (171)
T ss_pred CCHHHHH
Confidence 7655443
No 156
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.31 E-value=1.9e-12 Score=89.43 Aligned_cols=51 Identities=25% Similarity=0.417 Sum_probs=45.8
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.++++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.+++.++.
T Consensus 16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl--------~~~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA--------LTPSRGQVRIAGEDVN 67 (214)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEEcc
Confidence 368999999999986 99999999999999999998 7778899999987664
No 157
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.30 E-value=2.1e-12 Score=89.61 Aligned_cols=51 Identities=35% Similarity=0.412 Sum_probs=45.9
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+++++++++++|++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~ 67 (220)
T cd03263 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE--------LRPTSGTAYINGYSIR 67 (220)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEecc
Confidence 378999999999986 99999999999999999998 7788999999987654
No 158
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.30 E-value=1.7e-12 Score=89.93 Aligned_cols=50 Identities=20% Similarity=0.430 Sum_probs=45.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++++++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI--------EKPTRGKIRFNGQDLT 68 (216)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEehh
Confidence 68899999999986 99999999999999999998 7788899999987664
No 159
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.29 E-value=1.5e-12 Score=91.87 Aligned_cols=55 Identities=22% Similarity=0.308 Sum_probs=48.4
Q ss_pred HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEc
Q 033893 9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDL 71 (109)
Q Consensus 9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~ 71 (109)
.+|++++|++.+|+ ++|+|.||||||||++.|+|. ..|+.|++.++|.-..+.++
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi--------~~Pt~G~v~v~G~v~~li~l 96 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI--------YKPTSGKVKVTGKVAPLIEL 96 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCc--------cCCCCceEEEcceEehhhhc
Confidence 46899999998887 699999999999999999999 89999999999876555544
No 160
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.29 E-value=3.4e-12 Score=97.28 Aligned_cols=53 Identities=26% Similarity=0.368 Sum_probs=49.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD 70 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d 70 (109)
++++|++.+++|+| +|+|+||||||||+++|.|. ..|+.|+|.++|+.+.+.+
T Consensus 19 And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~--------~~P~~GeI~v~G~~v~~~s 72 (501)
T COG3845 19 ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL--------YQPDSGEIRVDGKEVRIKS 72 (501)
T ss_pred ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCc--------ccCCcceEEECCEEeccCC
Confidence 67899999999999 99999999999999999999 8999999999999887554
No 161
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.29 E-value=1.6e-12 Score=92.58 Aligned_cols=49 Identities=29% Similarity=0.421 Sum_probs=44.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
+|++++|.+++|++ +|+||||||||||++.+.|. ..|..|+|.+.+..+
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGl--------l~p~~G~i~~~g~~~ 68 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGL--------LKPSSGEIKIFGKPV 68 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CcCCcceEEEccccc
Confidence 78999999999997 99999999999999999998 888999999877643
No 162
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.29 E-value=2.2e-11 Score=79.70 Aligned_cols=77 Identities=18% Similarity=0.073 Sum_probs=58.8
Q ss_pred EEEEeCCCCcHHHHHHHHhcCc---cc-ccCC--cccCceEEEEEC-CEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 23 ILFLGLDNAGKTTLLHMLKDER---LV-QHQP--TQHPTSEELSIG-KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 23 i~lvG~~GsGKSTll~~l~g~~---~~-~~~p--t~~~~~g~i~~~-~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
|+++|.+|||||||++++.+.+ +. +..| |.......+.++ +..+.+||++|++++......+++++|+++.++
T Consensus 3 i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~ 82 (164)
T cd04171 3 IGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVV 82 (164)
T ss_pred EEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEE
Confidence 6899999999999999999743 21 1222 333444455665 788999999999988766677888999999999
Q ss_pred eCCC
Q 033893 96 KIEF 99 (109)
Q Consensus 96 ~~~~ 99 (109)
+.+.
T Consensus 83 d~~~ 86 (164)
T cd04171 83 AADE 86 (164)
T ss_pred ECCC
Confidence 9754
No 163
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.29 E-value=2.5e-12 Score=89.51 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=46.0
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+++++++++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~ 70 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL--------LKPTSGSIIFDGKDLL 70 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEEcc
Confidence 368999999999986 99999999999999999998 7788999999987654
No 164
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.29 E-value=2.7e-12 Score=89.68 Aligned_cols=50 Identities=26% Similarity=0.371 Sum_probs=45.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.++|..+.
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~ 65 (232)
T cd03218 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL--------VKPDSGKILLDGQDIT 65 (232)
T ss_pred eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEecc
Confidence 68899999999986 99999999999999999998 7788899999987654
No 165
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=2.6e-12 Score=89.29 Aligned_cols=50 Identities=26% Similarity=0.365 Sum_probs=45.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++++++.++++ +|+|+||||||||+++|+|. ..++.|+|.+++.++.
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--------~~~~~G~i~~~g~~~~ 65 (220)
T cd03265 15 AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL--------LKPTSGRATVAGHDVV 65 (220)
T ss_pred eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEecC
Confidence 67899999999986 99999999999999999998 7788999999887553
No 166
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.29 E-value=2.3e-12 Score=93.78 Aligned_cols=51 Identities=27% Similarity=0.383 Sum_probs=46.1
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+|++++|.+++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~ 58 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL--------LRPTSGTARVAGYDVV 58 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEcc
Confidence 368899999999987 99999999999999999998 7888999999987653
No 167
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.28 E-value=2.7e-12 Score=90.22 Aligned_cols=51 Identities=22% Similarity=0.340 Sum_probs=46.0
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 16 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL--------VEPSSGSILLEGTDIT 67 (243)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------cCCCccEEEECCEEhh
Confidence 378999999999986 99999999999999999998 7788899999987664
No 168
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=9.4e-12 Score=82.26 Aligned_cols=88 Identities=22% Similarity=0.353 Sum_probs=73.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
++.++|-+.+|||+++....+.-| ....+|.+ +..-+|.... +++.+||.+|++++|.+.-.||+++.+.+.+++
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyD 102 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 102 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEe
Confidence 789999999999999999998876 45666666 3445666554 678899999999999999999999999999999
Q ss_pred CCCccccccccCC
Q 033893 97 IEFRDFYEVEIFW 109 (109)
Q Consensus 97 ~~~~~~~~~~~~w 109 (109)
++...++...+.|
T Consensus 103 itNeeSf~svqdw 115 (193)
T KOG0093|consen 103 ITNEESFNSVQDW 115 (193)
T ss_pred cCCHHHHHHHHHH
Confidence 9888777655444
No 169
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.28 E-value=2.5e-12 Score=93.84 Aligned_cols=50 Identities=28% Similarity=0.395 Sum_probs=45.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 22 ~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl--------~~p~~G~v~i~G~~~~ 72 (306)
T PRK13537 22 VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL--------THPDAGSISLCGEPVP 72 (306)
T ss_pred EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEecc
Confidence 68899999999987 99999999999999999998 8888999999987654
No 170
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=2.5e-12 Score=90.10 Aligned_cols=50 Identities=26% Similarity=0.442 Sum_probs=45.7
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~i~ 74 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL--------DTPTSGDVIFNGQPMS 74 (233)
T ss_pred eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEEcC
Confidence 68899999999986 99999999999999999998 7788999999998664
No 171
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.28 E-value=6.4e-13 Score=93.79 Aligned_cols=55 Identities=27% Similarity=0.367 Sum_probs=49.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCc
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGH 74 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~ 74 (109)
+++++++++++|++ +|+|+||+|||||+|.+.|+ ..|+.|+|.+.|.++. .++..
T Consensus 23 Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl--------l~P~~GeI~i~G~~i~--~ls~~ 78 (263)
T COG1127 23 ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGL--------LRPDKGEILIDGEDIP--QLSEE 78 (263)
T ss_pred EecCceeeecCCcEEEEECCCCcCHHHHHHHHhcc--------CCCCCCeEEEcCcchh--ccCHH
Confidence 57899999999998 99999999999999999999 9999999999999866 44443
No 172
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=2.6e-12 Score=89.29 Aligned_cols=49 Identities=27% Similarity=0.426 Sum_probs=44.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
++++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++
T Consensus 19 il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~ 68 (220)
T cd03293 19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL--------ERPTSGEVLVDGEPV 68 (220)
T ss_pred EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEC
Confidence 68899999999986 99999999999999999998 777889999988755
No 173
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.28 E-value=2.8e-12 Score=88.96 Aligned_cols=50 Identities=32% Similarity=0.400 Sum_probs=45.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.+++.++.
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~ 65 (222)
T cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL--------LPPRSGSIRFDGRDIT 65 (222)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEEcC
Confidence 67899999999986 99999999999999999998 7788899999987654
No 174
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.28 E-value=1.5e-12 Score=83.92 Aligned_cols=49 Identities=29% Similarity=0.376 Sum_probs=43.9
Q ss_pred HHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 11 LASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 11 l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
|+++++.++++++ +|+|+||||||||+++|.|. ..++.|+|.+++.++.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~--------~~~~~G~i~~~~~~~~ 50 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGL--------LPPDSGSILINGKDIS 50 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTS--------SHESEEEEEETTEEGT
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccc--------cccccccccccccccc
Confidence 4688999999986 99999999999999999998 7788999999988765
No 175
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.28 E-value=2.8e-12 Score=88.52 Aligned_cols=49 Identities=27% Similarity=0.487 Sum_probs=44.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
++++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++
T Consensus 15 ~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~ 64 (213)
T cd03262 15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL--------EEPDSGTIIIDGLKL 64 (213)
T ss_pred eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEEC
Confidence 67899999999986 99999999999999999998 778889999998765
No 176
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.28 E-value=2.9e-12 Score=89.71 Aligned_cols=50 Identities=24% Similarity=0.359 Sum_probs=45.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++++++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 15 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~ 65 (236)
T cd03219 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF--------LRPTSGSVLFDGEDIT 65 (236)
T ss_pred EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCC--------CCCCCceEEECCEECC
Confidence 67899999999986 99999999999999999998 7788899999987654
No 177
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.28 E-value=3.1e-12 Score=88.33 Aligned_cols=51 Identities=31% Similarity=0.438 Sum_probs=45.6
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.++++++|++++|++ +|+|+||||||||++.|+|. ..++.|+|.+++.++.
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~~~~G~v~~~g~~~~ 65 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL--------EEPTSGRIYIGGRDVT 65 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEECC
Confidence 368899999999986 99999999999999999998 7788999999987653
No 178
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.28 E-value=3.1e-12 Score=87.85 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=45.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|.+++|++ +|+|+||||||||+++|+|. ..++.|+|.+++.++.
T Consensus 13 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~ 63 (206)
T TIGR03608 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL--------EKFDSGQVYLNGKETP 63 (206)
T ss_pred EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC--------CCCCCeEEEECCEEcc
Confidence 67899999999986 99999999999999999998 7788899999988754
No 179
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.27 E-value=3.1e-12 Score=88.33 Aligned_cols=51 Identities=24% Similarity=0.431 Sum_probs=45.6
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.++++++++++++++ +|+|+||||||||+++|+|. ..++.|+|.+++.++.
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~i~ 66 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE--------ELPTSGTIRVNGQDVS 66 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEEcc
Confidence 368899999999986 99999999999999999998 7788899999987654
No 180
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=3.1e-12 Score=89.53 Aligned_cols=51 Identities=24% Similarity=0.367 Sum_probs=46.1
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.++++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~ 70 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL--------ERPTSGSVLVDGTDLT 70 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEEcc
Confidence 468899999999986 99999999999999999998 7788899999998664
No 181
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.27 E-value=1.1e-11 Score=85.22 Aligned_cols=51 Identities=22% Similarity=0.414 Sum_probs=47.8
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+|++++|++++++. -++|+|||||||+++.|.+. ..|+.|+|.++++++.
T Consensus 16 ~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~--------e~pt~G~i~~~~~dl~ 67 (223)
T COG2884 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE--------ERPTRGKILVNGHDLS 67 (223)
T ss_pred hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhh--------hcCCCceEEECCeecc
Confidence 489999999999997 99999999999999999998 7889999999999887
No 182
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=3.2e-12 Score=89.90 Aligned_cols=50 Identities=26% Similarity=0.385 Sum_probs=45.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++++++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 17 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~ 67 (239)
T cd03296 17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL--------ERPDSGTILFGGEDAT 67 (239)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEECC
Confidence 67899999999986 99999999999999999998 7788899999987653
No 183
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=2.9e-12 Score=95.37 Aligned_cols=50 Identities=26% Similarity=0.407 Sum_probs=45.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 19 ~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl--------~~p~~G~I~~~g~~i~ 69 (356)
T PRK11650 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL--------ERITSGEIWIGGRVVN 69 (356)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC--------CCCCceEEEECCEECC
Confidence 67899999999986 99999999999999999999 7889999999998764
No 184
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.27 E-value=2.2e-12 Score=89.16 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=43.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIK 65 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~ 65 (109)
++++++++++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.+
T Consensus 14 ~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~p~~G~i~~~g~~ 62 (213)
T cd03235 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL--------LKPTSGSIRVFGKP 62 (213)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC--------CCCCCCEEEECCcc
Confidence 67899999999986 99999999999999999998 77888999998864
No 185
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=2.3e-12 Score=88.85 Aligned_cols=49 Identities=27% Similarity=0.341 Sum_probs=44.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++
T Consensus 15 ~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~ 64 (210)
T cd03269 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI--------ILPDSGEVLFDGKPL 64 (210)
T ss_pred EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCCch
Confidence 57889999999986 99999999999999999998 778889999988654
No 186
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=3.6e-12 Score=86.16 Aligned_cols=50 Identities=26% Similarity=0.415 Sum_probs=45.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.+++.++.
T Consensus 15 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~ 65 (178)
T cd03229 15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL--------EEPDSGSILIDGEDLT 65 (178)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEcc
Confidence 67889999999986 99999999999999999998 7788899999988664
No 187
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.27 E-value=3.2e-12 Score=88.73 Aligned_cols=50 Identities=30% Similarity=0.470 Sum_probs=45.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~--------~~~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL--------DNPTSGEVLFNGQSLS 70 (221)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEEhh
Confidence 68899999999986 99999999999999999998 7788999999987664
No 188
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.27 E-value=4e-12 Score=88.06 Aligned_cols=51 Identities=24% Similarity=0.303 Sum_probs=45.9
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.++++++++++++++ +|+|+||||||||++.|+|. ..++.|+|.+++.++.
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~ 70 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL--------LEPDAGFATVDGFDVV 70 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------cCCCCceEEECCEEcc
Confidence 378899999999986 99999999999999999998 7788999999988664
No 189
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=3.3e-12 Score=89.61 Aligned_cols=50 Identities=28% Similarity=0.382 Sum_probs=45.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++++++.+|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~ 66 (241)
T cd03256 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL--------VEPTSGSVLIDGTDIN 66 (241)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------cCCCCceEEECCEecc
Confidence 68899999999986 99999999999999999998 7788899999987664
No 190
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.26 E-value=3.3e-11 Score=79.31 Aligned_cols=78 Identities=18% Similarity=0.113 Sum_probs=61.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCccccc---CCcccCceEEEEEC---CEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLVQH---QPTQHPTSEELSIG---KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~~~---~pt~~~~~g~i~~~---~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
.|+++|.+|||||||++++.+.++... .+|.......+..+ +..+.++|++|++.++..|..++..+|+++.+.
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 479999999999999999998765332 22333333444443 678899999999999899999999999999999
Q ss_pred eCCC
Q 033893 96 KIEF 99 (109)
Q Consensus 96 ~~~~ 99 (109)
+.+.
T Consensus 82 d~~~ 85 (168)
T cd01887 82 AADD 85 (168)
T ss_pred ECCC
Confidence 8764
No 191
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.26 E-value=3.5e-12 Score=89.06 Aligned_cols=50 Identities=26% Similarity=0.312 Sum_probs=45.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.+++.++.
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~ 65 (230)
T TIGR03410 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL--------LPVKSGSIRLDGEDIT 65 (230)
T ss_pred EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCCEEEECCEECC
Confidence 67899999999986 99999999999999999998 7788999999987653
No 192
>PRK10908 cell division protein FtsE; Provisional
Probab=99.26 E-value=4.2e-12 Score=88.33 Aligned_cols=50 Identities=18% Similarity=0.375 Sum_probs=45.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~i~ 67 (222)
T PRK10908 17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI--------ERPSAGKIWFSGHDIT 67 (222)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEcc
Confidence 68899999999986 99999999999999999998 7788999999987664
No 193
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.26 E-value=4e-12 Score=89.23 Aligned_cols=50 Identities=20% Similarity=0.356 Sum_probs=45.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++++.+++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 16 ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL--------YVAQEGQISVAGHDLR 66 (236)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------cCCCceEEEECCEEcc
Confidence 57889999999986 99999999999999999998 7788999999987654
No 194
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.26 E-value=3.4e-12 Score=88.96 Aligned_cols=50 Identities=24% Similarity=0.369 Sum_probs=45.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcc-----cCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQ-----HPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~-----~~~~g~i~~~~~~i~ 67 (109)
+|++++|++.+|++ +|+|+||||||||+++|+|. . .++.|+|.++|.++.
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--------~~~~~~~~~~G~i~~~g~~~~ 70 (227)
T cd03260 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRL--------NDLIPGAPDEGEVLLDGKDIY 70 (227)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh--------cccccCCCCCeEEEECCEEhh
Confidence 68899999999986 99999999999999999998 6 678899999987654
No 195
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.26 E-value=3.3e-12 Score=94.94 Aligned_cols=50 Identities=26% Similarity=0.382 Sum_probs=45.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.++|..+.
T Consensus 19 ~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl--------~~p~~G~I~i~g~~~~ 69 (353)
T TIGR03265 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL--------ERQTAGTIYQGGRDIT 69 (353)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC--------CCCCceEEEECCEECC
Confidence 57889999999986 99999999999999999999 7889999999998664
No 196
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.26 E-value=3.8e-12 Score=88.80 Aligned_cols=50 Identities=28% Similarity=0.382 Sum_probs=45.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl--------~~p~~G~i~~~g~~~~ 75 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGL--------DDGSSGEVSLVGQPLH 75 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--------CCCCCeeEEECCEEcc
Confidence 68899999999986 99999999999999999998 7788999999988664
No 197
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.26 E-value=3.5e-12 Score=94.41 Aligned_cols=50 Identities=18% Similarity=0.332 Sum_probs=45.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..|+.|+|.++|.++.
T Consensus 56 ~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl--------~~p~~G~i~i~G~~~~ 106 (340)
T PRK13536 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM--------TSPDAGKITVLGVPVP 106 (340)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--------CCCCceEEEECCEECC
Confidence 68899999999987 99999999999999999998 7888999999997653
No 198
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=3.8e-12 Score=90.62 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=44.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~ 65 (255)
T PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF--------VPYQHGSITLDGKPV 65 (255)
T ss_pred eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEEC
Confidence 67899999999986 99999999999999999998 778889999988765
No 199
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.25 E-value=4.6e-12 Score=92.17 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=44.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++
T Consensus 19 ~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~ 68 (303)
T TIGR01288 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM--------ISPDRGKITVLGEPV 68 (303)
T ss_pred EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEC
Confidence 68899999999986 99999999999999999998 778899999998765
No 200
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.25 E-value=4.7e-12 Score=87.21 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=45.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|.++++++ +|+|+||||||||+++|.|. ..++.|+|.+++.++.
T Consensus 16 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~p~~G~v~~~g~~~~ 66 (204)
T PRK13538 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL--------ARPDAGEVLWQGEPIR 66 (204)
T ss_pred EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEEcc
Confidence 57899999999986 99999999999999999998 7788899999987654
No 201
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=4.4e-12 Score=91.68 Aligned_cols=50 Identities=20% Similarity=0.354 Sum_probs=46.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++++++++|++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 22 ~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~ 72 (287)
T PRK13641 22 GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNAL--------LKPSSGTITIAGYHIT 72 (287)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCEECc
Confidence 78999999999986 99999999999999999998 8888999999998664
No 202
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.25 E-value=5.1e-12 Score=85.69 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=45.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++++++++++ +|+|+||||||||+++|+|. ..++.|+|.+++.++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~ 65 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL--------RPPASGEITLDGKPVT 65 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEECC
Confidence 67899999999986 99999999999999999998 7788999999997665
No 203
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=4.6e-12 Score=94.18 Aligned_cols=50 Identities=26% Similarity=0.435 Sum_probs=45.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++++++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 21 ~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl--------~~p~~G~I~~~g~~i~ 71 (351)
T PRK11432 21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL--------EKPTEGQIFIDGEDVT 71 (351)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC--------CCCCceEEEECCEECC
Confidence 57889999999986 99999999999999999999 8889999999998764
No 204
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.25 E-value=5.3e-12 Score=88.75 Aligned_cols=50 Identities=24% Similarity=0.452 Sum_probs=45.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|++.++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~ 66 (240)
T PRK09493 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL--------EEITSGDLIVDGLKVN 66 (240)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEECC
Confidence 68899999999986 99999999999999999998 7788999999987654
No 205
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.25 E-value=5.5e-12 Score=86.42 Aligned_cols=50 Identities=24% Similarity=0.332 Sum_probs=45.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|.+.++++ +|+|+||||||||++.|+|. ..++.|+|.+++.++.
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~ 65 (198)
T TIGR01189 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL--------LRPDSGEVRWNGTALA 65 (198)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCccEEEECCEEcc
Confidence 57899999999986 99999999999999999998 7778899999987654
No 206
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=4.5e-12 Score=91.60 Aligned_cols=50 Identities=18% Similarity=0.346 Sum_probs=46.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|+++++++++|++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl--------~~p~~G~i~~~g~~i~ 72 (286)
T PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL--------LKPTTGTVTVDDITIT 72 (286)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCEECc
Confidence 78999999999986 99999999999999999998 7888999999998664
No 207
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=5.5e-12 Score=90.66 Aligned_cols=50 Identities=20% Similarity=0.394 Sum_probs=45.7
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 22 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--------~~p~~G~i~~~g~~i~ 72 (280)
T PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL--------HVPTQGSVRVDDTLIT 72 (280)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEcc
Confidence 78999999999986 99999999999999999998 7788999999987664
No 208
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=5.7e-12 Score=90.26 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=46.1
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.++++++|++.+|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 15 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~i~ 66 (271)
T PRK13638 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL--------LRPQKGAVLWQGKPLD 66 (271)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC--------CCCCccEEEECCEEcc
Confidence 378999999999986 99999999999999999998 7788999999998764
No 209
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.24 E-value=4.3e-12 Score=87.44 Aligned_cols=50 Identities=30% Similarity=0.506 Sum_probs=44.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|+++++++ +|+|+||||||||++.|+|. ..++.|+|.+++.++.
T Consensus 15 ~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~ 65 (208)
T cd03268 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL--------IKPDSGEITFDGKSYQ 65 (208)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------cCCCceEEEECCCccc
Confidence 67899999999986 99999999999999999998 7788899999887553
No 210
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.24 E-value=4.5e-12 Score=93.97 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=46.9
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+|++++|+++++++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl--------~~p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL--------ERPTSGSVIVDGQDLT 70 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEECC
Confidence 378999999999997 99999999999999999999 7889999999998765
No 211
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=4.6e-12 Score=87.44 Aligned_cols=50 Identities=28% Similarity=0.329 Sum_probs=44.3
Q ss_pred HHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|+++++.++|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 15 ~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~ 64 (211)
T cd03264 15 ALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATL--------TPPSSGTIRIDGQDVL 64 (211)
T ss_pred EEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCC--------CCCCccEEEECCCccc
Confidence 6789999998885599999999999999999998 7788999999887554
No 212
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.24 E-value=3.4e-11 Score=82.78 Aligned_cols=85 Identities=16% Similarity=0.140 Sum_probs=61.6
Q ss_pred cEEEEEeCCCCcHHHHHH-HHhcCc-----c-cccCCcccC-ce---E-------EEEECC--EEEEEEEcCCccccccc
Q 033893 21 AKILFLGLDNAGKTTLLH-MLKDER-----L-VQHQPTQHP-TS---E-------ELSIGK--IKFKAFDLGGHQIARRV 80 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~-~l~g~~-----~-~~~~pt~~~-~~---g-------~i~~~~--~~i~~~d~~g~~~~r~~ 80 (109)
.+|+++|.+|+|||+|+. .+.+.. + .++.||++. +. . .+.+++ +.+.+||++|+++ .+
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~~ 80 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--KD 80 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--hh
Confidence 478999999999999995 554332 2 346777742 11 1 113454 6788999999875 34
Q ss_pred HHhhhhcCCEEEEEEeCCCcccccccc
Q 033893 81 WKDYYAKVIGSFKTKKIEFRDFYEVEI 107 (109)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~~~~~~~~~ 107 (109)
.+.||+++++++++++++...+++...
T Consensus 81 ~~~~~~~ad~iilv~d~t~~~Sf~~~~ 107 (195)
T cd01873 81 RRFAYGRSDVVLLCFSIASPNSLRNVK 107 (195)
T ss_pred hcccCCCCCEEEEEEECCChhHHHHHH
Confidence 467899999999999999888877653
No 213
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.24 E-value=7.2e-12 Score=88.49 Aligned_cols=50 Identities=26% Similarity=0.484 Sum_probs=45.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.+++.++.
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~ 68 (250)
T PRK11264 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL--------EQPEAGTIRVGDITID 68 (250)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCeEEEECCEEcc
Confidence 68899999999986 99999999999999999998 7788899999988764
No 214
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.24 E-value=6.1e-12 Score=89.85 Aligned_cols=50 Identities=24% Similarity=0.357 Sum_probs=45.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 26 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL--------EKPAQGTVSFRGQDLY 76 (265)
T ss_pred EeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEEcc
Confidence 78999999999986 99999999999999999998 7788999999987654
No 215
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=5.3e-12 Score=88.81 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=45.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 18 ~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~ 68 (241)
T PRK10895 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI--------VPRDAGNIIIDDEDIS 68 (241)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEECC
Confidence 67899999999986 99999999999999999998 7788899999987653
No 216
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=5.6e-12 Score=88.86 Aligned_cols=50 Identities=26% Similarity=0.433 Sum_probs=45.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|++.+|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 18 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~i~ 68 (241)
T PRK14250 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL--------IDPTEGSILIDGVDIK 68 (241)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEEhh
Confidence 67899999999986 99999999999999999998 7788999999987654
No 217
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.24 E-value=2.2e-12 Score=86.23 Aligned_cols=90 Identities=21% Similarity=0.348 Sum_probs=77.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
..+++++|+-=+|||+|+-....++| ..+.+|.. |...++.+++ .++.+||.+||+++..+=+.||+..++++.+
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLV 92 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLV 92 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEE
Confidence 35789999999999999999998888 46777665 4445566665 5778999999999999999999999999999
Q ss_pred EeCCCccccccccCC
Q 033893 95 KKIEFRDFYEVEIFW 109 (109)
Q Consensus 95 ~~~~~~~~~~~~~~w 109 (109)
+|++.++++.+.+.|
T Consensus 93 yDITDrdSFqKVKnW 107 (218)
T KOG0088|consen 93 YDITDRDSFQKVKNW 107 (218)
T ss_pred EeccchHHHHHHHHH
Confidence 999999999987766
No 218
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.24 E-value=6.9e-12 Score=87.79 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=44.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC----ceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP----TSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~----~~g~i~~~~~~i~ 67 (109)
++++++++++++++ +|+|+||||||||+++|+|. ..+ +.|+|.++|.++.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~~~~~G~i~~~g~~~~ 55 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGL--------LPPGLTQTSGEILLDGRPLL 55 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCccCccccEEEECCEech
Confidence 36789999999986 99999999999999999998 665 7899999987654
No 219
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=5.4e-12 Score=88.87 Aligned_cols=50 Identities=26% Similarity=0.401 Sum_probs=45.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++++.+++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 16 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~ 66 (242)
T cd03295 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL--------IEPTSGEIFIDGEDIR 66 (242)
T ss_pred EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCceEEECCeEcC
Confidence 67899999999986 99999999999999999998 7788899999987654
No 220
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=5.1e-12 Score=91.38 Aligned_cols=51 Identities=22% Similarity=0.378 Sum_probs=46.4
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+|++++|++.+|++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~ 72 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL--------LKPTSGKIIIDGVDIT 72 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCccEEEECCEECC
Confidence 378999999999986 99999999999999999998 7888999999997664
No 221
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=7.6e-12 Score=84.07 Aligned_cols=51 Identities=29% Similarity=0.435 Sum_probs=45.5
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.++++++|+++++++ +|+|+||||||||+++++|. ..++.|++.+++.++.
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~--------~~~~~G~i~~~g~~~~ 67 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL--------YDPTSGEILIDGVDLR 67 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--------CCCCCCEEEECCEEhh
Confidence 368899999999986 99999999999999999998 7778899999987654
No 222
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=6.4e-12 Score=90.03 Aligned_cols=50 Identities=28% Similarity=0.417 Sum_probs=45.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 39 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl--------~~p~~G~i~i~g~~~~ 89 (269)
T cd03294 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL--------IEPTSGKVLIDGQDIA 89 (269)
T ss_pred EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCeEEEECCEEcc
Confidence 57899999999986 99999999999999999998 7788899999987664
No 223
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.23 E-value=6e-12 Score=87.92 Aligned_cols=50 Identities=26% Similarity=0.381 Sum_probs=45.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.+++.++.
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~ 72 (225)
T PRK10247 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL--------ISPTSGTLLFEGEDIS 72 (225)
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------cCCCCCeEEECCEEcC
Confidence 68899999999986 99999999999999999998 7788899999987653
No 224
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.23 E-value=6.6e-12 Score=89.84 Aligned_cols=51 Identities=29% Similarity=0.409 Sum_probs=46.1
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.++++++++++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~ 78 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM--------IEPTSGELLIDDHPLH 78 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC--------CCCCCCEEEECCEECC
Confidence 378999999999986 99999999999999999998 7888999999987654
No 225
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.23 E-value=6.3e-12 Score=84.05 Aligned_cols=50 Identities=26% Similarity=0.434 Sum_probs=44.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++++++++|++ +|+|+||||||||++.|+|. ..++.|+|.+++.++.
T Consensus 15 vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--------~~~~~G~v~~~g~~~~ 65 (163)
T cd03216 15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL--------YKPDSGEILVDGKEVS 65 (163)
T ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCeEEEECCEECC
Confidence 67889999999986 99999999999999999998 7788899999887654
No 226
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=7.4e-12 Score=87.32 Aligned_cols=50 Identities=26% Similarity=0.420 Sum_probs=45.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.+++.++.
T Consensus 18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~ 68 (229)
T cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF--------YDPQKGQILIDGIDIR 68 (229)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------cCCCCCEEEECCEeHH
Confidence 78999999999986 99999999999999999998 7788899999987553
No 227
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.23 E-value=6.3e-12 Score=91.46 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=45.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|.+++|++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 17 ~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl--------~~~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY--------LPPDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEcc
Confidence 67899999999987 99999999999999999998 7888999999987654
No 228
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.23 E-value=6.5e-12 Score=94.11 Aligned_cols=50 Identities=22% Similarity=0.413 Sum_probs=45.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++++++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 29 ~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl--------~~p~~G~I~~~g~~i~ 79 (375)
T PRK09452 29 VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF--------ETPDSGRIMLDGQDIT 79 (375)
T ss_pred EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCceEEEECCEECC
Confidence 57889999999986 99999999999999999999 7888999999998664
No 229
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=8e-12 Score=84.12 Aligned_cols=50 Identities=30% Similarity=0.415 Sum_probs=44.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++++++++++ +|+|+||||||||++.|+|. ..+..|+|.+++.++.
T Consensus 15 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~--------~~~~~G~i~~~g~~~~ 65 (173)
T cd03230 15 ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL--------LKPDSGEIKVLGKDIK 65 (173)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCeEEEECCEEcc
Confidence 67899999999986 99999999999999999998 7778899999987654
No 230
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.23 E-value=6.1e-12 Score=88.46 Aligned_cols=50 Identities=22% Similarity=0.510 Sum_probs=45.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.+++.++.
T Consensus 17 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~p~~G~i~~~g~~~~ 67 (242)
T TIGR03411 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK--------TRPDEGSVLFGGTDLT 67 (242)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCCeEEECCeecC
Confidence 68899999999986 99999999999999999998 7788899999987654
No 231
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.23 E-value=7.8e-12 Score=84.75 Aligned_cols=72 Identities=25% Similarity=0.332 Sum_probs=58.1
Q ss_pred HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc
Q 033893 9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK 87 (109)
Q Consensus 9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~ 87 (109)
.+|+++||.+++|+ ++|.||||||||||+++++.. ..++.|++.+.|.++.-. +.+.+|.- -.|+++
T Consensus 17 ~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~L--------isp~~G~l~f~Ge~vs~~---~pea~Rq~-VsY~~Q 84 (223)
T COG4619 17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL--------ISPTSGTLLFEGEDVSTL---KPEAYRQQ-VSYCAQ 84 (223)
T ss_pred eeecceeeeecCCceEEEeCCCCccHHHHHHHHHhc--------cCCCCceEEEcCcccccc---ChHHHHHH-HHHHHc
Confidence 36889999999998 599999999999999999998 889999999999988733 34445554 367776
Q ss_pred CCEEE
Q 033893 88 VIGSF 92 (109)
Q Consensus 88 ~~~~v 92 (109)
..+++
T Consensus 85 ~paLf 89 (223)
T COG4619 85 TPALF 89 (223)
T ss_pred Ccccc
Confidence 65544
No 232
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.23 E-value=5.4e-12 Score=86.68 Aligned_cols=50 Identities=24% Similarity=0.405 Sum_probs=44.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++++++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|..+.
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--------~~~~~G~v~~~g~~~~ 66 (200)
T PRK13540 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL--------LNPEKGEILFERQSIK 66 (200)
T ss_pred EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCeeEEECCCccc
Confidence 68899999999986 99999999999999999998 7788999999887653
No 233
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.23 E-value=7.8e-12 Score=87.66 Aligned_cols=49 Identities=22% Similarity=0.400 Sum_probs=43.4
Q ss_pred HHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 11 LASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 11 l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~ 50 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGL--------AQPTSGGVILEGKQIT 50 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEECC
Confidence 3678999999986 99999999999999999998 7788899999987653
No 234
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.23 E-value=8.4e-12 Score=86.62 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=45.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.+++.++.
T Consensus 19 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~ 69 (221)
T cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL--------VELSSGSILIDGVDIS 69 (221)
T ss_pred cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcC--------CCCCCCEEEECCEEhH
Confidence 78999999999986 99999999999999999998 7788899999987654
No 235
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=6.7e-12 Score=90.20 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=45.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~ 67 (274)
T PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL--------LRPQKGKVLVSGIDTG 67 (274)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCceEEECCEECC
Confidence 78999999999986 99999999999999999998 7788899999987664
No 236
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.23 E-value=7.6e-12 Score=86.78 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=45.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.+++..+.
T Consensus 19 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~--------~~~~~G~i~~~g~~~~ 69 (220)
T cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL--------YKPTSGSVLLDGTDIR 69 (220)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------cCCCCCeEEECCEEhH
Confidence 78999999999986 99999999999999999998 6778899999887653
No 237
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.23 E-value=1.1e-12 Score=85.61 Aligned_cols=85 Identities=22% Similarity=0.294 Sum_probs=71.0
Q ss_pred EEeCCCCcHHHHHHHHhcCcc--cccCCcccCceE--EEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893 25 FLGLDNAGKTTLLHMLKDERL--VQHQPTQHPTSE--ELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE 98 (109)
Q Consensus 25 lvG~~GsGKSTll~~l~g~~~--~~~~pt~~~~~g--~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~ 98 (109)
++|.++.|||.||-.+....| .+.++|++.+.. -|..++ +++++||.+||+++|++...||+.+++++..++++
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 689999999999988886654 357777875543 345555 67789999999999999999999999999999999
Q ss_pred CccccccccCC
Q 033893 99 FRDFYEVEIFW 109 (109)
Q Consensus 99 ~~~~~~~~~~w 109 (109)
.+.+++..+.|
T Consensus 82 nkasfdn~~~w 92 (192)
T KOG0083|consen 82 NKASFDNCQAW 92 (192)
T ss_pred cchhHHHHHHH
Confidence 99999887666
No 238
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.22 E-value=7.3e-12 Score=87.87 Aligned_cols=50 Identities=28% Similarity=0.442 Sum_probs=45.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--------~~~~~G~i~~~g~~~~ 68 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF--------YDPTSGEILLDGVDIR 68 (238)
T ss_pred ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc--------CCCCCCEEEECCEehh
Confidence 78899999999986 99999999999999999998 7788899999987653
No 239
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.22 E-value=8.7e-12 Score=87.73 Aligned_cols=50 Identities=30% Similarity=0.422 Sum_probs=45.0
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
.+|++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.+++..+
T Consensus 35 ~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl--------~~p~~G~i~~~g~~~ 85 (236)
T cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL--------LQPTSGEVRVAGLVP 85 (236)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------cCCCceEEEECCEEc
Confidence 378899999999986 99999999999999999998 778899999988753
No 240
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.22 E-value=8e-12 Score=88.47 Aligned_cols=50 Identities=16% Similarity=0.291 Sum_probs=45.7
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|+++++++ +|+|+||||||||++.|+|. ..++.|+|.++|.++.
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~i~ 65 (252)
T TIGR03005 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTL--------EPIDEGQIQVEGEQLY 65 (252)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEcc
Confidence 67899999999986 99999999999999999998 7788999999998765
No 241
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.22 E-value=6.2e-12 Score=90.19 Aligned_cols=49 Identities=22% Similarity=0.236 Sum_probs=44.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++
T Consensus 22 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~i 71 (272)
T PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF--------VRLASGKISILGQPT 71 (272)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEh
Confidence 67899999999986 99999999999999999998 778899999998764
No 242
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=8.7e-12 Score=87.76 Aligned_cols=50 Identities=30% Similarity=0.397 Sum_probs=45.2
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
.++++++++++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~ 66 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL--------EMPRSGTLNIAGNHF 66 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEec
Confidence 368899999999986 99999999999999999998 778889999998765
No 243
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.22 E-value=7.3e-12 Score=84.79 Aligned_cols=50 Identities=32% Similarity=0.438 Sum_probs=45.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++++.++++++ +|+|+||||||||+++|.|. ..++.|+|.+++.++.
T Consensus 14 ~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~--------~~~~~G~v~~~g~~~~ 64 (180)
T cd03214 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL--------LKPSSGEILLDGKDLA 64 (180)
T ss_pred eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEECC
Confidence 67899999999986 99999999999999999998 7788999999987664
No 244
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=7.8e-12 Score=88.53 Aligned_cols=50 Identities=24% Similarity=0.370 Sum_probs=45.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|+++++++.+|++ +|+|+||||||||+++|+|. ..++.|+|.++|..+.
T Consensus 20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~ 70 (255)
T PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF--------YKPTGGTILLRGQHIE 70 (255)
T ss_pred EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC--------cCCCcceEEECCEECC
Confidence 67899999999986 99999999999999999998 7788999999987653
No 245
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=7.2e-12 Score=90.02 Aligned_cols=50 Identities=28% Similarity=0.310 Sum_probs=45.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++++++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 20 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~ 70 (274)
T PRK13647 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI--------YLPQRGRVKVMGREVN 70 (274)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCceEEEECCEECC
Confidence 78999999999986 99999999999999999998 7788999999987653
No 246
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.22 E-value=1e-11 Score=87.75 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=44.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCc-----eEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT-----SEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~-----~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||++.|+|. ..++ .|+|.++|.++.
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~p~~~~~~~G~i~~~g~~~~ 71 (247)
T TIGR00972 16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM--------NDLVPGVRIEGKVLFDGQDIY 71 (247)
T ss_pred eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcc--------CCCCcCCCCceEEEECCEEcc
Confidence 68899999999986 99999999999999999998 5555 899999988664
No 247
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=7.3e-12 Score=90.07 Aligned_cols=50 Identities=22% Similarity=0.299 Sum_probs=45.7
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 19 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~ 69 (277)
T PRK13652 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI--------LKPTSGSVLIRGEPIT 69 (277)
T ss_pred eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEECC
Confidence 78999999999986 99999999999999999998 7888999999987654
No 248
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=6.9e-12 Score=90.63 Aligned_cols=49 Identities=18% Similarity=0.309 Sum_probs=45.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++
T Consensus 26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~i 75 (289)
T PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL--------IISETGQTIVGDYAI 75 (289)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCceEEECCEEc
Confidence 78999999999986 99999999999999999998 778889999998765
No 249
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=7.6e-12 Score=87.80 Aligned_cols=50 Identities=28% Similarity=0.397 Sum_probs=45.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~p~~G~i~~~g~~~~ 70 (237)
T PRK11614 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD--------PRATSGRIVFDGKDIT 70 (237)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC--------CCCCCceEEECCEecC
Confidence 68899999999986 99999999999999999998 7788899999987654
No 250
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=6.6e-12 Score=92.95 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=46.3
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+|++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 19 ~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl--------~~p~~G~I~~~g~~i~ 70 (343)
T PRK11153 19 HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL--------ERPTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCceEEEECCEECC
Confidence 368899999999986 99999999999999999998 7788999999998664
No 251
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.22 E-value=6.5e-12 Score=89.95 Aligned_cols=50 Identities=26% Similarity=0.399 Sum_probs=45.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 22 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~i~ 72 (269)
T PRK11831 22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ--------IAPDHGEILFDGENIP 72 (269)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEEcc
Confidence 57889999999986 99999999999999999998 7788899999987654
No 252
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=9.3e-12 Score=89.09 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=45.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++++++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 24 ~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl--------~~~~~G~i~~~g~~~~ 74 (269)
T PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI--------EKVKSGEIFYNNQAIT 74 (269)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEECC
Confidence 68899999999986 99999999999999999998 7788999999997654
No 253
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.22 E-value=7.9e-12 Score=86.31 Aligned_cols=49 Identities=18% Similarity=0.354 Sum_probs=44.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
++++++|+++++++ +|+|+||||||||+++|.|. ..++.|+|.+++.++
T Consensus 17 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~ 66 (207)
T PRK13539 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL--------LPPAAGTIKLDGGDI 66 (207)
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEeC
Confidence 57899999999986 99999999999999999998 777889999988754
No 254
>PRK04213 GTP-binding protein; Provisional
Probab=99.22 E-value=4.9e-11 Score=81.39 Aligned_cols=76 Identities=21% Similarity=0.358 Sum_probs=54.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCceEEEEECCEEEEEEEcCC-----------cccccccHHhhhh-
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTSEELSIGKIKFKAFDLGG-----------HQIARRVWKDYYA- 86 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~g~i~~~~~~i~~~d~~g-----------~~~~r~~~~~~~~- 86 (109)
..+|+++|.+|+|||||++++.+..+. ...|........+.++ .+.+||++| +++++..+..|+.
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIED 86 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999987653 3455444444444444 578999999 6778888888876
Q ss_pred cC---CEEEEEEeC
Q 033893 87 KV---IGSFKTKKI 97 (109)
Q Consensus 87 ~~---~~~v~~~~~ 97 (109)
++ +.++.+.+-
T Consensus 87 ~~~~~~~vi~v~d~ 100 (201)
T PRK04213 87 NADRILAAVLVVDG 100 (201)
T ss_pred hhhhheEEEEEEeC
Confidence 33 455555554
No 255
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.22 E-value=1.1e-11 Score=85.33 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=44.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++++++++|++ +|+|+||||||||++.|+|. ..++.|+|.+++.++.
T Consensus 15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~ 65 (201)
T cd03231 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL--------SPPLAGRVLLNGGPLD 65 (201)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEecc
Confidence 67899999999986 99999999999999999998 7788899999887653
No 256
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.21 E-value=8.3e-12 Score=96.60 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=64.7
Q ss_pred HHHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhh
Q 033893 8 YGILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYA 86 (109)
Q Consensus 8 ~~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~ 86 (109)
..++++|||++++|++ +|+|+||||||||.++|.|. ..|+.|+|.++|.+ .++.+. -+..+.+
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL--------~~P~~G~i~~~g~~---~~~~~~-----~~~~~r~ 367 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL--------LPPSSGSIIFDGQD---LDLTGG-----ELRRLRR 367 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEEeCcc---cccccc-----hhhhhhh
Confidence 4679999999999997 99999999999999999999 88899999999877 233321 1234455
Q ss_pred cCCEEEEEEeCCCcccccc
Q 033893 87 KVIGSFKTKKIEFRDFYEV 105 (109)
Q Consensus 87 ~~~~~v~~~~~~~~~~~~~ 105 (109)
+...+++.+..++.++.++
T Consensus 368 ~~QmvFQdp~~SLnPr~tV 386 (539)
T COG1123 368 RIQMVFQDPYSSLNPRMTV 386 (539)
T ss_pred heEEEEeCcccccCccccH
Confidence 6677777777777777665
No 257
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.21 E-value=9.9e-12 Score=83.66 Aligned_cols=50 Identities=18% Similarity=0.328 Sum_probs=45.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++++++++++ +|+|+||||||||+++|+|. ..++.|+|.+++.++.
T Consensus 17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~--------~~~~~G~i~~~g~~~~ 67 (173)
T cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGL--------LRPTSGRVRLDGADIS 67 (173)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhc--------cCCCCCeEEECCEEcc
Confidence 67899999999986 99999999999999999998 7788899999987664
No 258
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.21 E-value=7.4e-12 Score=84.55 Aligned_cols=49 Identities=29% Similarity=0.523 Sum_probs=44.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
++++++++++++++ +|+|+||||||||++.|+|. ..+..|+|.+++.++
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~--------~~~~~G~i~~~g~~~ 66 (178)
T cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGD--------LKPQQGEITLDGVPV 66 (178)
T ss_pred ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------CCCCCCEEEECCEEH
Confidence 68899999999986 99999999999999999998 777889999988754
No 259
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=8.5e-12 Score=89.90 Aligned_cols=50 Identities=20% Similarity=0.376 Sum_probs=46.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++++++++|++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~--------~~p~~G~i~~~g~~i~ 72 (279)
T PRK13635 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL--------LLPEAGTITVGGMVLS 72 (279)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCCcEEEECCEECC
Confidence 78999999999987 99999999999999999998 7888999999998764
No 260
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.21 E-value=1e-11 Score=87.19 Aligned_cols=50 Identities=24% Similarity=0.326 Sum_probs=43.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcc--cCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQ--HPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~--~~~~g~i~~~~~~i~ 67 (109)
+|+++++.+++|++ +|+|+||||||||+++|+|. . .++.|+|.++|.++.
T Consensus 15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH--------PSYEVTSGTILFKGQDLL 67 (243)
T ss_pred EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCCcceEEECCEecC
Confidence 67899999999986 99999999999999999997 3 367799999887553
No 261
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.21 E-value=9.2e-12 Score=88.93 Aligned_cols=50 Identities=18% Similarity=0.304 Sum_probs=45.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 22 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--------~~~~~G~i~~~g~~~~ 72 (265)
T PRK10253 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL--------MTPAHGHVWLDGEHIQ 72 (265)
T ss_pred EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCC--------CCCCCcEEEECCEEhh
Confidence 67899999999986 99999999999999999998 7788899999987654
No 262
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.21 E-value=9.5e-12 Score=86.97 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=45.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|+++++++ +|+|+||||||||+++++|. ..++.|+|.+++..+.
T Consensus 37 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~p~~G~i~~~g~~~~ 87 (224)
T cd03220 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI--------YPPDSGTVTVRGRVSS 87 (224)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEch
Confidence 68899999999986 99999999999999999998 7788999999987653
No 263
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=8.2e-12 Score=90.44 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=46.4
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+|+++++++++|++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~i~ 72 (290)
T PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL--------LQPTSGTVTIGERVIT 72 (290)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCCcEEEECCEECc
Confidence 378999999999986 99999999999999999998 7788899999998663
No 264
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.21 E-value=8.8e-12 Score=89.01 Aligned_cols=50 Identities=28% Similarity=0.462 Sum_probs=44.2
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
.++++++|++.+|++ +|+|+||||||||+++|+|. ..++.|+|.+++..+
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl--------~~p~~G~i~~~g~~~ 76 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL--------ETPSAGELLAGTAPL 76 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCeEEEECCEEH
Confidence 368899999999986 99999999999999999998 778889999887643
No 265
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.21 E-value=9.6e-12 Score=86.99 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=45.4
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.++++++|+++++++ +|+|+||||||||++.|+|. ..++.|+|.++|..+.
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~ 67 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRF--------YDVDSGRILIDGHDVR 67 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------ccCCCCEEEECCEEhh
Confidence 368899999999986 99999999999999999998 7788899999987654
No 266
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.21 E-value=1.1e-11 Score=86.05 Aligned_cols=50 Identities=28% Similarity=0.365 Sum_probs=45.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|.+.+|++ +|+|+||||||||+++|.|. ..++.|+|.+++..+.
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--------~~~~~G~i~~~g~~i~ 76 (214)
T PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL--------LHVESGQIQIDGKTAT 76 (214)
T ss_pred eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC--------CCCCCeeEEECCEEcc
Confidence 67899999999986 99999999999999999998 7788899999987654
No 267
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.21 E-value=9.6e-12 Score=88.58 Aligned_cols=50 Identities=30% Similarity=0.473 Sum_probs=45.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.+++.++.
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--------~~p~~G~i~~~g~~~~ 67 (258)
T PRK13548 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE--------LSPDSGEVRLNGRPLA 67 (258)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCCEEEECCEEcc
Confidence 68899999999986 99999999999999999998 7788899999987654
No 268
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.21 E-value=1e-11 Score=85.61 Aligned_cols=51 Identities=25% Similarity=0.382 Sum_probs=44.8
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc---CceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH---PTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~---~~~g~i~~~~~~i~ 67 (109)
.++++++|+++++++ +|+|+||||||||+++|+|. .. ++.|+|.+++.++.
T Consensus 21 ~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~~~~G~i~i~g~~~~ 75 (202)
T cd03233 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR--------TEGNVSVEGDIHYNGIPYK 75 (202)
T ss_pred eeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhccc--------CCCCCCcceEEEECCEECc
Confidence 367899999999986 99999999999999999998 55 67899999987654
No 269
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=8.5e-12 Score=89.11 Aligned_cols=50 Identities=30% Similarity=0.474 Sum_probs=45.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~ 76 (265)
T PRK10575 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH--------QPPSEGEILLDAQPLE 76 (265)
T ss_pred EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCC--------CCCCCCEEEECCEehh
Confidence 67899999999986 99999999999999999998 7788899999987653
No 270
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.21 E-value=8.3e-12 Score=86.77 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=41.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEE-ECCEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS-IGKIK 65 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~-~~~~~ 65 (109)
+|++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|. +++..
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--------~~~~sG~i~~~~~~~ 51 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL--------DAPDEGDFIGLRGDA 51 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------ccCCCCCEEEecCce
Confidence 47899999999986 99999999999999999998 677888886 66543
No 271
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=1.1e-11 Score=88.87 Aligned_cols=51 Identities=25% Similarity=0.403 Sum_probs=45.8
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+++++++++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~p~~G~I~~~g~~i~ 74 (271)
T PRK13632 23 NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL--------LKPQSGEIKIDGITIS 74 (271)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCceEEECCEecC
Confidence 368999999999986 99999999999999999998 7788899999987664
No 272
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.20 E-value=9.3e-12 Score=87.29 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=45.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++++++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~ 67 (237)
T cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF--------YVPENGRVLVDGHDLA 67 (237)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------cCCCCCEEEECCeehH
Confidence 68899999999986 99999999999999999998 7788899999987653
No 273
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.20 E-value=1.5e-11 Score=84.33 Aligned_cols=51 Identities=25% Similarity=0.326 Sum_probs=45.9
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcc--cCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQ--HPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~--~~~~g~i~~~~~~i~ 67 (109)
.++++++++++++++ +|+|+||||||||++.|+|. . .+..|+|.+++.++.
T Consensus 23 ~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl--------~~~~~~~G~i~~~g~~~~ 76 (194)
T cd03213 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR--------RTGLGVSGEVLINGRPLD 76 (194)
T ss_pred cceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCCceEEEECCEeCc
Confidence 478999999999986 99999999999999999998 6 778899999987654
No 274
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.20 E-value=1e-11 Score=88.14 Aligned_cols=50 Identities=20% Similarity=0.429 Sum_probs=45.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|.+++|++ +|+|+||||||||+++|+|. ..++.|+|.+++.++.
T Consensus 16 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--------~~~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA--------LRPDAGTVDLAGVDLH 66 (256)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--------CCCCCCEEEECCEEcc
Confidence 67899999999986 99999999999999999998 7788899999988665
No 275
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.20 E-value=1.8e-11 Score=85.44 Aligned_cols=50 Identities=26% Similarity=0.359 Sum_probs=44.4
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc---CceEEEEECCEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH---PTSEELSIGKIKF 66 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~---~~~g~i~~~~~~i 66 (109)
.++++++++++++++ +|+|+||||||||++.|+|. .. ++.|+|.++|.++
T Consensus 21 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~--------~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR--------VEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCc--------cCCCCCCceEEEECCEEC
Confidence 478999999999986 99999999999999999998 55 6789999988654
No 276
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=9.9e-12 Score=89.30 Aligned_cols=50 Identities=28% Similarity=0.393 Sum_probs=45.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++++++++|++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 17 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--------~~~~~G~i~~~g~~~~ 67 (275)
T PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGI--------LKPTSGEVLIKGEPIK 67 (275)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCccEEEECCEECc
Confidence 68899999999986 99999999999999999998 7788999999997663
No 277
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=1.1e-11 Score=92.94 Aligned_cols=50 Identities=26% Similarity=0.460 Sum_probs=45.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++++++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 34 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl--------~~p~~G~I~i~g~~i~ 84 (377)
T PRK11607 34 AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF--------EQPTAGQIMLDGVDLS 84 (377)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCceEEEECCEECC
Confidence 57889999999986 99999999999999999999 7888999999998654
No 278
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=9.9e-12 Score=89.52 Aligned_cols=50 Identities=16% Similarity=0.275 Sum_probs=46.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|+++++++++|++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~i~ 72 (279)
T PRK13650 22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL--------LEAESGQIIIDGDLLT 72 (279)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCEECC
Confidence 78999999999986 99999999999999999998 7888999999998664
No 279
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=1.1e-11 Score=89.69 Aligned_cols=50 Identities=28% Similarity=0.446 Sum_probs=46.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|+++++++.+|++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~i~ 71 (288)
T PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL--------LQPTEGKVTVGDIVVS 71 (288)
T ss_pred ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC--------CCCCCcEEEECCEECc
Confidence 78999999999985 99999999999999999998 7888999999998764
No 280
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.20 E-value=9.4e-12 Score=92.89 Aligned_cols=50 Identities=24% Similarity=0.347 Sum_probs=46.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl--------~~p~~G~I~i~G~~i~ 58 (363)
T TIGR01186 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL--------IEPTAGQIFIDGENIM 58 (363)
T ss_pred eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCC--------CCCCceEEEECCEECC
Confidence 67899999999997 99999999999999999999 8888999999998765
No 281
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.20 E-value=1.3e-11 Score=85.95 Aligned_cols=49 Identities=29% Similarity=0.417 Sum_probs=44.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
++++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.+++.++
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~~~~~ 64 (223)
T TIGR03740 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI--------LRPTSGEIIFDGHPW 64 (223)
T ss_pred EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEec
Confidence 67899999999986 99999999999999999998 778899999988654
No 282
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=1.2e-11 Score=89.04 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=46.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 25 vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~i~g~~i~ 75 (280)
T PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL--------LIPSEGKVYVDGLDTS 75 (280)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEecc
Confidence 78999999999986 99999999999999999999 7788999999987664
No 283
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=1.3e-11 Score=89.15 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=45.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++
T Consensus 21 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl--------~~p~~G~i~i~g~~~ 70 (283)
T PRK13636 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI--------LKPSSGRILFDGKPI 70 (283)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCccEEEECCEEC
Confidence 78899999999986 99999999999999999998 778899999999766
No 284
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=1.4e-11 Score=87.22 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=44.2
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC-----ceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP-----TSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~-----~~g~i~~~~~~i~ 67 (109)
.++++++|++++|++ +|+|+||||||||+++|+|. ..+ +.|+|.++|.++.
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~~~~~~~~~G~i~~~g~~i~ 74 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRL--------LELNEEARVEGEVRLFGRNIY 74 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------CCcccCCCCceEEEECCEEcc
Confidence 368899999999986 99999999999999999998 443 4899999987653
No 285
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.19 E-value=1.1e-11 Score=92.60 Aligned_cols=50 Identities=32% Similarity=0.493 Sum_probs=45.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++++++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl--------~~p~~G~I~~~g~~i~ 68 (369)
T PRK11000 18 ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL--------EDITSGDLFIGEKRMN 68 (369)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCceEEEECCEECC
Confidence 67899999999986 99999999999999999998 7888999999987654
No 286
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.19 E-value=1.2e-11 Score=86.61 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=45.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++++++++|++ +|+|+||||||||+++|+|. ..++.|+|.+++.++.
T Consensus 16 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--------~~~~~G~v~~~g~~~~ 66 (236)
T cd03253 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF--------YDVSSGSILIDGQDIR 66 (236)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------cCCCCCEEEECCEEhh
Confidence 67899999999986 99999999999999999998 7788999999987654
No 287
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.19 E-value=2.5e-10 Score=77.78 Aligned_cols=78 Identities=17% Similarity=0.156 Sum_probs=60.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc--CcccccC-------------Cccc----CceEEEEECCEEEEEEEcCCcccccccHH
Q 033893 22 KILFLGLDNAGKTTLLHMLKD--ERLVQHQ-------------PTQH----PTSEELSIGKIKFKAFDLGGHQIARRVWK 82 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g--~~~~~~~-------------pt~~----~~~g~i~~~~~~i~~~d~~g~~~~r~~~~ 82 (109)
+|+++|.+|+|||||++++.. ..+.... ++.+ .....+..++..+.+||++|+++++..+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 579999999999999999985 3332211 1111 22345666788999999999999999999
Q ss_pred hhhhcCCEEEEEEeCCC
Q 033893 83 DYYAKVIGSFKTKKIEF 99 (109)
Q Consensus 83 ~~~~~~~~~v~~~~~~~ 99 (109)
.|++++++++++++.+.
T Consensus 84 ~~~~~~d~~ilV~d~~~ 100 (194)
T cd01891 84 RVLSMVDGVLLLVDASE 100 (194)
T ss_pred HHHHhcCEEEEEEECCC
Confidence 99999999999999764
No 288
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.19 E-value=1.2e-11 Score=85.79 Aligned_cols=51 Identities=14% Similarity=0.258 Sum_probs=45.4
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.++++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.+++.++.
T Consensus 15 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--------~~~~~G~i~~~g~~~~ 66 (218)
T cd03290 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGE--------MQTLEGKVHWSNKNES 66 (218)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------CCCCCCeEEECCcccc
Confidence 378899999999986 99999999999999999998 6778899999887654
No 289
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.19 E-value=9.8e-12 Score=92.46 Aligned_cols=50 Identities=26% Similarity=0.409 Sum_probs=45.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++.++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 17 ~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl--------~~p~~G~I~i~g~~i~ 67 (353)
T PRK10851 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL--------EHQTSGHIRFHGTDVS 67 (353)
T ss_pred EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEECC
Confidence 67899999999986 99999999999999999998 7888999999998664
No 290
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=1.3e-11 Score=87.65 Aligned_cols=50 Identities=30% Similarity=0.428 Sum_probs=44.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.+++.++.
T Consensus 17 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~ 67 (255)
T PRK11231 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL--------LTPQSGTVFLGDKPIS 67 (255)
T ss_pred EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC--------cCCCCcEEEECCEEhH
Confidence 67899999999986 99999999999999999998 7788899999987653
No 291
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.19 E-value=1.5e-11 Score=87.01 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=43.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|+|..-. .| ..++.|+|.++|.++.
T Consensus 21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~-~~~~~G~i~~~g~~i~ 76 (253)
T PRK14242 21 ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDL--IP-GARVEGEILLDGENIY 76 (253)
T ss_pred eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhccc--CC-CCCCceEEEECCEEcc
Confidence 68899999999986 99999999999999999987100 00 0146799999987654
No 292
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.19 E-value=1.1e-11 Score=85.85 Aligned_cols=53 Identities=26% Similarity=0.392 Sum_probs=48.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD 70 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d 70 (109)
+++++++.++++.+ .++|||||||||||..++.. ...+.|+|.++|.++..|+
T Consensus 16 vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL--------~~~d~G~i~i~g~~~~~~~ 69 (252)
T COG4604 16 VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRL--------LKKDSGEITIDGLELTSTP 69 (252)
T ss_pred eeccceeeecCCceeEEECCCCccHHHHHHHHHHh--------ccccCceEEEeeeecccCC
Confidence 57889999999998 99999999999999999998 8899999999999998554
No 293
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.19 E-value=1.7e-11 Score=84.40 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=45.6
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+++++++.++++++ +|+|+||||||||+++|+|. ..++.|+|.+++.++.
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~ 73 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF--------LEAEEGKIEIDGIDIS 73 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcc--------cCCCCCeEEECCEEhH
Confidence 378999999999986 99999999999999999998 7788899999987653
No 294
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.18 E-value=1.6e-11 Score=85.31 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=45.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|.+++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 20 il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~--------~~~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGL--------RSVQEGSLKVLGQELY 70 (220)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCeEEEECCEEhH
Confidence 68899999999986 99999999999999999998 7788899999987654
No 295
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.18 E-value=2.4e-11 Score=83.88 Aligned_cols=47 Identities=23% Similarity=0.403 Sum_probs=42.4
Q ss_pred hcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 13 SLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 13 ~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++|++.++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl--------~~~~~G~i~~~g~~~~ 63 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF--------ETPQSGRVLINGVDVT 63 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEEcC
Confidence 78899999986 99999999999999999998 7788899999987654
No 296
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.18 E-value=1.2e-11 Score=84.02 Aligned_cols=80 Identities=20% Similarity=0.250 Sum_probs=60.9
Q ss_pred HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc
Q 033893 9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK 87 (109)
Q Consensus 9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~ 87 (109)
.+|+++++.+++++ ++|+|+||||||||+-.++|. ..++.|+|.+-|+.+.-.|..+.. -++.
T Consensus 24 ~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL--------d~~ssGeV~l~G~~L~~ldEd~rA--------~~R~ 87 (228)
T COG4181 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL--------DDPSSGEVRLLGQPLHKLDEDARA--------ALRA 87 (228)
T ss_pred eEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcC--------CCCCCceEEEcCcchhhcCHHHHH--------Hhhc
Confidence 46888999999887 699999999999999999999 788999999999888755543332 2344
Q ss_pred CCEEEEEEeCCCccccc
Q 033893 88 VIGSFKTKKIEFRDFYE 104 (109)
Q Consensus 88 ~~~~v~~~~~~~~~~~~ 104 (109)
.+.-++++++-+-+.++
T Consensus 88 ~~vGfVFQSF~Lip~lt 104 (228)
T COG4181 88 RHVGFVFQSFHLIPNLT 104 (228)
T ss_pred cceeEEEEeeeccccch
Confidence 56666666655544443
No 297
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.18 E-value=1.3e-11 Score=87.80 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=44.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIK 65 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~ 65 (109)
++++++|++++|++ +|+|+||||||||++.|+|. ..++.|+|.+++.+
T Consensus 21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~ 69 (258)
T PRK11701 21 GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR--------LAPDAGEVHYRMRD 69 (258)
T ss_pred eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCCEEEECCcc
Confidence 67899999999986 99999999999999999998 77888999998876
No 298
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.18 E-value=1.4e-11 Score=84.73 Aligned_cols=47 Identities=23% Similarity=0.269 Sum_probs=43.4
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~ 63 (109)
.++++++++++++++ +|+|+||||||||++.|+|. ..++.|+|.++|
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~--------~~~~~G~i~~~g 66 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE--------LEKLSGSVSVPG 66 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc--------CCCCCCeEEEcC
Confidence 378999999999986 99999999999999999998 778889999987
No 299
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.18 E-value=1.6e-11 Score=88.29 Aligned_cols=51 Identities=27% Similarity=0.339 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCE
Q 033893 6 WFYGILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI 64 (109)
Q Consensus 6 ~~~~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~ 64 (109)
+...++.++||++++|.+ +++|+|||||||++++|+|. ..|+.|.+.++|.
T Consensus 35 ~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl--------l~p~~G~v~V~G~ 86 (325)
T COG4586 35 RSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL--------LLPTSGKVRVNGK 86 (325)
T ss_pred hhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc--------cccCCCeEEecCc
Confidence 355689999999999987 99999999999999999999 8888999988875
No 300
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.18 E-value=3.1e-11 Score=84.25 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=47.5
Q ss_pred HHHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893 8 YGILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF 69 (109)
Q Consensus 8 ~~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~ 69 (109)
.++|++|++.+++.+| +++|||||||||+|+++..++ +..|... -.|+|.++|.++..+
T Consensus 20 ~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn--dl~~~~r-~~G~v~~~g~ni~~~ 79 (253)
T COG1117 20 KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN--DLIPGAR-VEGEVLLDGKNIYDP 79 (253)
T ss_pred hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhc--ccCcCce-EEEEEEECCeeccCC
Confidence 3689999999999998 999999999999999998763 2223222 359999999988744
No 301
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.18 E-value=1.4e-11 Score=85.78 Aligned_cols=50 Identities=14% Similarity=0.315 Sum_probs=44.8
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
.+++++++.++++++ +|+|+||||||||+++|+|. ..++.|+|.++|..+
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~ 78 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF--------YQPQGGQVLLDGKPI 78 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------cCCCCcEEEECCCch
Confidence 378999999999986 99999999999999999998 778889999988654
No 302
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.18 E-value=6e-11 Score=80.68 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=52.7
Q ss_pred HHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE----EcCCcccc-cccHHhh
Q 033893 11 LASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF----DLGGHQIA-RRVWKDY 84 (109)
Q Consensus 11 l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~----d~~g~~~~-r~~~~~~ 84 (109)
+.++ +.++++++ +|+|+||||||||+++|+|. ..++.|+|.+++..+.+. ++++.++- -.+.+..
T Consensus 16 l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral 86 (177)
T cd03222 16 LVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQ--------LIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAAL 86 (177)
T ss_pred EccC-cEECCCCEEEEECCCCChHHHHHHHHHcC--------CCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHH
Confidence 4443 67888876 99999999999999999998 788899999998765432 13333322 2244555
Q ss_pred hhcCCEEEE
Q 033893 85 YAKVIGSFK 93 (109)
Q Consensus 85 ~~~~~~~v~ 93 (109)
..+++.++.
T Consensus 87 ~~~p~lllL 95 (177)
T cd03222 87 LRNATFYLF 95 (177)
T ss_pred hcCCCEEEE
Confidence 556666555
No 303
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.18 E-value=1.9e-11 Score=86.88 Aligned_cols=50 Identities=16% Similarity=0.365 Sum_probs=45.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|.|. ..++.|+|.+++..+.
T Consensus 20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--------~~~~~G~i~~~g~~~~ 70 (257)
T PRK10619 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL--------EKPSEGSIVVNGQTIN 70 (257)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCeEEEECCEEcc
Confidence 57899999999986 99999999999999999998 7788899999997664
No 304
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.17 E-value=1.3e-11 Score=93.16 Aligned_cols=50 Identities=26% Similarity=0.412 Sum_probs=45.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|.+++|++ +|+|+||||||||+++|+|. ..+..|+|.++|.++.
T Consensus 18 vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl--------l~p~sG~I~l~G~~i~ 68 (402)
T PRK09536 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT--------LTPTAGTVLVAGDDVE 68 (402)
T ss_pred EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC--------CCCCCcEEEECCEEcC
Confidence 67899999999997 99999999999999999998 7888999999998664
No 305
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=2.2e-11 Score=86.07 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=43.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|+|. .. ++.|+|.++|.++.
T Consensus 18 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--------~~~~~~~~~~G~i~~~g~~i~ 73 (250)
T PRK14247 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL--------IELYPEARVSGEVYLDGQDIF 73 (250)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhcc--------CCCCCCCCCceEEEECCEECC
Confidence 67899999999986 99999999999999999998 43 35899999987654
No 306
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=2e-11 Score=87.47 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=43.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||++.|+|. .. ++.|+|.++|.++.
T Consensus 28 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 28 AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM--------NDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------ccccCCCCCceEEEECCEEcc
Confidence 67899999999986 99999999999999999997 33 46899999987653
No 307
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.17 E-value=1.8e-11 Score=90.00 Aligned_cols=51 Identities=20% Similarity=0.314 Sum_probs=46.4
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+|+++++.+++|++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl--------~~p~~G~I~i~g~~~~ 91 (320)
T PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL--------IKSKYGTIQVGDIYIG 91 (320)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCCeEEECCEEcc
Confidence 378999999999986 99999999999999999998 7888999999987664
No 308
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.17 E-value=1.6e-11 Score=86.90 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=43.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIK 65 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~ 65 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.+++.+
T Consensus 18 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~ 66 (253)
T TIGR02323 18 GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR--------LAPDHGTATYIMRS 66 (253)
T ss_pred EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEEeccc
Confidence 57899999999986 99999999999999999998 77888999998754
No 309
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.17 E-value=1.5e-11 Score=80.81 Aligned_cols=76 Identities=24% Similarity=0.288 Sum_probs=56.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCE-EEEEE-EcCCcccccc-cHHhhh
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI-KFKAF-DLGGHQIARR-VWKDYY 85 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~-~i~~~-d~~g~~~~r~-~~~~~~ 85 (109)
++++++|+++++++ +|+|+||||||||+++++|. ..++.|+|.+++. .+.+. .+++.++-|. +.+...
T Consensus 15 ~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~--------~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~ 86 (144)
T cd03221 15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGE--------LEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLL 86 (144)
T ss_pred EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCC--------CCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHh
Confidence 67889999999987 99999999999999999998 7788999999874 33322 3444333222 445556
Q ss_pred hcCCEEEE
Q 033893 86 AKVIGSFK 93 (109)
Q Consensus 86 ~~~~~~v~ 93 (109)
.+++.++.
T Consensus 87 ~~p~illl 94 (144)
T cd03221 87 ENPNLLLL 94 (144)
T ss_pred cCCCEEEE
Confidence 66666555
No 310
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=2.6e-11 Score=84.99 Aligned_cols=50 Identities=32% Similarity=0.438 Sum_probs=45.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++++.+++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 15 il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~--------~~~~~G~i~~~g~~~~ 65 (232)
T cd03300 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF--------ETPTSGEILLDGKDIT 65 (232)
T ss_pred eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEEcC
Confidence 68899999999986 99999999999999999998 7788899999987654
No 311
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.17 E-value=2.1e-11 Score=87.67 Aligned_cols=50 Identities=26% Similarity=0.432 Sum_probs=44.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCc--------eEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT--------SEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~--------~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..++ .|+|.++|.++.
T Consensus 16 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~--------~~p~~~~~~~~~~G~i~~~g~~~~ 74 (272)
T PRK13547 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGD--------LTGGGAPRGARVTGDVTLNGEPLA 74 (272)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCcccccccCCceEEEECCEEcc
Confidence 67899999999986 99999999999999999998 5555 799999987664
No 312
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.17 E-value=5.4e-11 Score=75.20 Aligned_cols=78 Identities=23% Similarity=0.316 Sum_probs=61.3
Q ss_pred EEeCCCCcHHHHHHHHhcCcc--cccCCcccCceEEEEEC----CEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893 25 FLGLDNAGKTTLLHMLKDERL--VQHQPTQHPTSEELSIG----KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE 98 (109)
Q Consensus 25 lvG~~GsGKSTll~~l~g~~~--~~~~pt~~~~~g~i~~~----~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~ 98 (109)
++|+.|||||||++.+.+... ....|+. .+...+... +..+.+||++|.......+..+++.+++++.+++.+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998765 3344554 444444444 678899999999988888888999999999999987
Q ss_pred Ccccc
Q 033893 99 FRDFY 103 (109)
Q Consensus 99 ~~~~~ 103 (109)
.....
T Consensus 80 ~~~~~ 84 (157)
T cd00882 80 DRESF 84 (157)
T ss_pred CHHHH
Confidence 65543
No 313
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.17 E-value=8.2e-12 Score=91.37 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=45.5
Q ss_pred HHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 11 LASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 11 l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++++++|+| +|+|+||||||||++++.+. +.|+.|+|.++|.++.
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrL--------iept~G~ilv~g~di~ 93 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRL--------IEPTRGEILVDGKDIA 93 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhcc--------CCCCCceEEECCcchh
Confidence 5678999999998 99999999999999999999 8899999999998766
No 314
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.17 E-value=3.1e-11 Score=83.03 Aligned_cols=58 Identities=24% Similarity=0.311 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEc
Q 033893 6 WFYGILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDL 71 (109)
Q Consensus 6 ~~~~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~ 71 (109)
...++++.++|+.+++. ++++|.||||||||.++++|. +.|..|+|.+|+..+..-|-
T Consensus 24 ~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm--------i~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 24 QTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM--------IEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred hhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcc--------cCCCCceEEECCccccccch
Confidence 34568999999998886 599999999999999999999 99999999999988876664
No 315
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.17 E-value=2.2e-11 Score=86.71 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=43.7
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~ 67 (109)
+|+++++++++|++ +|+|+||||||||++.|+|. .. ++.|+|.++|.++.
T Consensus 28 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~p~~p~~G~i~~~g~~~~ 83 (260)
T PRK10744 28 ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRM--------YELYPEQRAEGEILLDGENIL 83 (260)
T ss_pred EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------cccCCCCCcceEEEECCEEcc
Confidence 68899999999986 99999999999999999997 43 46799999987663
No 316
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.16 E-value=2.2e-11 Score=86.45 Aligned_cols=51 Identities=10% Similarity=0.119 Sum_probs=44.6
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC----ceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP----TSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~----~~g~i~~~~~~i~ 67 (109)
.+++++++++.+|++ +|+|+||||||||++.|+|. ..+ +.|+|.++|.++.
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~~~~~~~~G~i~~~g~~i~ 72 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGI--------LPAGVRQTAGRVLLDGKPVA 72 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCCCcCCEEEECCeecc
Confidence 368899999999986 99999999999999999998 555 7899999987653
No 317
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.16 E-value=1e-10 Score=79.98 Aligned_cols=81 Identities=22% Similarity=0.229 Sum_probs=59.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-c--ccCCcccCceEEEEECCE-EEEEEEcCCccc---------ccccHHhhhhc
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-V--QHQPTQHPTSEELSIGKI-KFKAFDLGGHQI---------ARRVWKDYYAK 87 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~--~~~pt~~~~~g~i~~~~~-~i~~~d~~g~~~---------~r~~~~~~~~~ 87 (109)
.+|+|+|++|||||||++.+.+.++ . ...||..+..+.+.+++. .+.+||.+|... ++..+ ..+.+
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~ 120 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAE 120 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHHhc
Confidence 4789999999999999999998763 2 234556666677777664 889999999632 22222 23668
Q ss_pred CCEEEEEEeCCCccc
Q 033893 88 VIGSFKTKKIEFRDF 102 (109)
Q Consensus 88 ~~~~v~~~~~~~~~~ 102 (109)
+++++.+.|.+...+
T Consensus 121 ~d~ii~v~D~~~~~~ 135 (204)
T cd01878 121 ADLLLHVVDASDPDY 135 (204)
T ss_pred CCeEEEEEECCCCCh
Confidence 999999998876543
No 318
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=3e-11 Score=85.60 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=43.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC-----ceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP-----TSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~-----~~g~i~~~~~~i~ 67 (109)
++++++|.+++|++ +|+|+||||||||+++|+|. ..+ +.|+|.++|.++.
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 22 ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRM--------NDLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcc--------ccCCcCCCCceEEEECCEecc
Confidence 68899999999986 99999999999999999998 443 4799999987653
No 319
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.16 E-value=2.5e-11 Score=85.41 Aligned_cols=50 Identities=22% Similarity=0.372 Sum_probs=45.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++++++.+|++ +|+|+||||||||++.|+|. ..+..|+|.++|.++.
T Consensus 15 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--------~~~~~G~i~i~g~~~~ 65 (237)
T TIGR00968 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL--------EQPDSGRIRLNGQDAT 65 (237)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEEcC
Confidence 68899999999986 99999999999999999998 7778899999987654
No 320
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.16 E-value=4.2e-10 Score=79.32 Aligned_cols=80 Identities=18% Similarity=0.103 Sum_probs=60.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCccc--c-cCCcccCceEEEEECCEEEEEEEcCCccccc----c---cHHhhhhcCCE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLV--Q-HQPTQHPTSEELSIGKIKFKAFDLGGHQIAR----R---VWKDYYAKVIG 90 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~--~-~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r----~---~~~~~~~~~~~ 90 (109)
++++|+|++|||||||+++|.+.... . ..+|..+..|.+.+++..+.+||++|..... . ....+++++++
T Consensus 1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~ 80 (233)
T cd01896 1 ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADL 80 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCE
Confidence 47899999999999999999987531 1 2234556789999999999999999864322 1 22457889999
Q ss_pred EEEEEeCCCc
Q 033893 91 SFKTKKIEFR 100 (109)
Q Consensus 91 ~v~~~~~~~~ 100 (109)
++.+.+.+..
T Consensus 81 il~V~D~t~~ 90 (233)
T cd01896 81 ILMVLDATKP 90 (233)
T ss_pred EEEEecCCcc
Confidence 9999987543
No 321
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.16 E-value=1.9e-11 Score=87.41 Aligned_cols=50 Identities=20% Similarity=0.316 Sum_probs=43.7
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~ 67 (109)
+|+++++.+++|++ +|+|+||||||||+++|+|. .. ++.|+|.++|.++.
T Consensus 34 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 34 ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRM--------NDTIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhh--------cccccCCCCceEEEECCEECc
Confidence 57899999999986 99999999999999999997 43 36899999987654
No 322
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.16 E-value=2.3e-11 Score=87.10 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=45.6
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.++++++|++++|++ +|+|+||||||||+++|.|. ..++.|+|.++|..+.
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~sG~i~~~g~~~~ 77 (268)
T PRK10419 26 TVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL--------ESPSQGNVSWRGEPLA 77 (268)
T ss_pred eeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEecc
Confidence 368999999999986 99999999999999999998 6778899999987654
No 323
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.15 E-value=2.4e-11 Score=93.58 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=45.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++.+|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~--------~~p~~G~i~~~g~~~~ 69 (501)
T PRK10762 19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI--------YTRDAGSILYLGKEVT 69 (501)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEECC
Confidence 68899999999986 99999999999999999998 7788999999987653
No 324
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.15 E-value=2.9e-11 Score=85.99 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=43.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i 66 (109)
+|+++++++++|++ +|+|+||||||||++.|+|. .. ++.|+|.++|.++
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl--------~~~~~~~~~~G~I~~~g~~~ 73 (258)
T PRK14241 19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRM--------HEVIPGARVEGEVLLDGEDL 73 (258)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc--------CCcccCCCcceEEEECCEec
Confidence 68899999999986 99999999999999999997 43 3589999998765
No 325
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.15 E-value=4.9e-11 Score=82.59 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=46.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++.++++++.+++. +++||||||||||++.++|. ..|..|+|.+++..+.
T Consensus 20 ~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf--------~~P~~G~i~l~~r~i~ 70 (259)
T COG4525 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF--------VTPSRGSIQLNGRRIE 70 (259)
T ss_pred hhhccceeecCCCEEEEEcCCCccHHHHHHHHhcC--------cCcccceEEECCEecc
Confidence 78999999999985 99999999999999999999 8999999999998776
No 326
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.15 E-value=2.3e-11 Score=81.54 Aligned_cols=46 Identities=22% Similarity=0.253 Sum_probs=41.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~ 63 (109)
++++++++++++++ +|+|+||||||||++++.|. ..++.|+|.+++
T Consensus 16 ~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~~ 62 (166)
T cd03223 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGL--------WPWGSGRIGMPE 62 (166)
T ss_pred eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCceEEECC
Confidence 67899999999986 99999999999999999998 777889998876
No 327
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.15 E-value=3.3e-11 Score=83.43 Aligned_cols=50 Identities=22% Similarity=0.381 Sum_probs=44.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+.+++++++++++ +|+|+||||||||+++|.|. ..++.|+|.+++.++.
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~ 63 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF--------IEPASGSIKVNDQSHT 63 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCEEcc
Confidence 34688999999986 99999999999999999998 7888999999987653
No 328
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=3e-11 Score=85.93 Aligned_cols=50 Identities=16% Similarity=0.273 Sum_probs=43.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. .. ++.|+|.++|..+.
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl--------~~~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 27 ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRM--------NDLIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCcccCCCcceEEEECCEEcc
Confidence 68899999999986 99999999999999999997 43 36899999987664
No 329
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.15 E-value=1.7e-11 Score=92.50 Aligned_cols=50 Identities=24% Similarity=0.424 Sum_probs=45.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|+++++++ +|+|+||||||||+++|.|. ..|+.|+|.++|.++.
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl--------~~p~sG~I~i~G~~i~ 93 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL--------IEPTRGQVLIDGVDIA 93 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcC--------CCCCCCEEEECCEECC
Confidence 57889999999986 99999999999999999999 7888999999998664
No 330
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.15 E-value=2.4e-11 Score=93.79 Aligned_cols=50 Identities=32% Similarity=0.523 Sum_probs=45.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 20 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl--------~~p~~G~i~~~g~~i~ 70 (510)
T PRK09700 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI--------HEPTKGTITINNINYN 70 (510)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--------cCCCccEEEECCEECC
Confidence 68899999999986 99999999999999999998 7788899999987654
No 331
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.15 E-value=2.5e-11 Score=87.32 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=45.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++++++.+|++ +|+|+||||||||+++|+|. ..+..|+|.++|.++.
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~i~ 72 (277)
T PRK13642 22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL--------FEEFEGKVKIDGELLT 72 (277)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCCCEEEECCEECC
Confidence 78999999999986 99999999999999999999 7788999999987653
No 332
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=3.1e-11 Score=86.32 Aligned_cols=55 Identities=13% Similarity=0.253 Sum_probs=43.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|+++++++++|++ +|+|+||||||||+++|+|.... .| ..++.|+|.++|.++.
T Consensus 36 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~-~~~~~G~i~~~g~~i~ 91 (268)
T PRK14248 36 AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDL--IP-SARSEGEILYEGLNIL 91 (268)
T ss_pred eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccc--cC-CCCCceEEEECCEEcc
Confidence 68899999999986 99999999999999999996100 00 0156799999987664
No 333
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.15 E-value=3.6e-11 Score=82.67 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=43.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|++.+|++ +|+|+||||||||++.|+|... ..++.|+|.++|.++.
T Consensus 15 ~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~------~~p~~G~i~~~g~~~~ 67 (200)
T cd03217 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK------YEVTEGEILFKGEDIT 67 (200)
T ss_pred eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCc------CCCCccEEEECCEECC
Confidence 67899999999986 9999999999999999999710 1467899999987654
No 334
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.15 E-value=2.5e-11 Score=89.60 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=46.3
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.++++++|++++|++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl--------~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGL--------VKATDGEVAWLGKDLL 86 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCC--------CCCCCcEEEECCEECC
Confidence 478999999999986 99999999999999999998 7778899999998764
No 335
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.14 E-value=2.6e-11 Score=88.59 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=44.7
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
.+|+++++++++|++ +|+|+||||||||+++|+|. ..++.|+|.+++.+.
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl--------~~p~~G~i~~~g~~~ 71 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL--------LLPDTGTIEWIFKDE 71 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCCcEEEEeceec
Confidence 378999999999985 99999999999999999998 778889999987644
No 336
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=3.4e-11 Score=85.10 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=43.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|+|. .. ++.|+|.++|.++.
T Consensus 18 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl--------~~~~~~~~~~G~i~i~g~~~~ 73 (250)
T PRK14262 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRM--------NDHIPGFRVEGKIYFKGQDIY 73 (250)
T ss_pred eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcc--------ccCCCCCCcceEEEECCEEcc
Confidence 67899999999986 99999999999999999997 43 26799999987654
No 337
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.14 E-value=2.3e-11 Score=84.63 Aligned_cols=45 Identities=27% Similarity=0.361 Sum_probs=41.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG 62 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~ 62 (109)
++++++|++++|++ +|+|+||||||||+++|.|. ..++.|+|.++
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~--------~~~~~G~i~~~ 68 (224)
T TIGR02324 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN--------YLPDSGRILVR 68 (224)
T ss_pred EEecceEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCCeEEEe
Confidence 68999999999986 99999999999999999998 77778998886
No 338
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.14 E-value=1.5e-11 Score=87.37 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=47.3
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.++++++|.+++|++ +++|+|||||||.+|+|.+. ..++.|+|.++|.++.
T Consensus 16 ~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgl--------le~~~G~I~~~g~~~~ 67 (300)
T COG4152 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL--------LEPTEGEITWNGGPLS 67 (300)
T ss_pred eeecceeeeecCCeEEEeecCCCCCccchHHHHhcc--------CCccCceEEEcCcchh
Confidence 478999999999998 99999999999999999999 8899999999997665
No 339
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.14 E-value=2.8e-11 Score=89.19 Aligned_cols=51 Identities=24% Similarity=0.281 Sum_probs=46.1
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.++++++|++++|++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl--------~~p~~G~i~~~g~~l~ 80 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI--------ETPTGGELYYQGQDLL 80 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcC--------CCCCCcEEEECCEEcC
Confidence 478999999999986 99999999999999999998 6677899999998664
No 340
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=3.1e-11 Score=82.52 Aligned_cols=51 Identities=25% Similarity=0.388 Sum_probs=43.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
++++++++++++++ +|+|+||||||||++.|+|... ..++.|++.+++.++
T Consensus 22 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~------~~~~~G~i~~~g~~~ 73 (192)
T cd03232 22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT------AGVITGEILINGRPL 73 (192)
T ss_pred eEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCc------CCCcceEEEECCEeh
Confidence 68899999999986 9999999999999999998610 135789999988765
No 341
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.14 E-value=4.8e-10 Score=74.84 Aligned_cols=78 Identities=15% Similarity=-0.000 Sum_probs=60.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccccC-------------------CcccCceEEEEECCEEEEEEEcCCcccccccHH
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLVQHQ-------------------PTQHPTSEELSIGKIKFKAFDLGGHQIARRVWK 82 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~-------------------pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~ 82 (109)
+|+++|..|||||||++.+.+....... .+.......+..++..+.++|++|...++..+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 3789999999999999999877543211 122223344556678899999999998888899
Q ss_pred hhhhcCCEEEEEEeCCC
Q 033893 83 DYYAKVIGSFKTKKIEF 99 (109)
Q Consensus 83 ~~~~~~~~~v~~~~~~~ 99 (109)
.+++++++++.+.+.+.
T Consensus 81 ~~~~~~d~~i~v~d~~~ 97 (189)
T cd00881 81 RGLSVSDGAILVVDANE 97 (189)
T ss_pred HHHHhcCEEEEEEECCC
Confidence 99999999999988754
No 342
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.14 E-value=3.4e-11 Score=86.35 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=44.1
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~ 67 (109)
.+|+++++++++|++ +|+|+||||||||+++|+|. .. ++.|+|.++|.++.
T Consensus 38 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl--------~~~~~~~~~~G~i~~~g~~~~ 94 (271)
T PRK14238 38 HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRM--------VELVPSVKTTGKILYRDQNIF 94 (271)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh--------ccCCCCCCCceeEEECCEEcc
Confidence 367899999999986 99999999999999999997 43 47899999987653
No 343
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.14 E-value=3.9e-11 Score=84.80 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=43.8
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.++++++|+++++++ +|+|+||||||||+++|+|.... .|+ .++.|+|.++|.++.
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~~-~~~~G~i~~~g~~~~ 73 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDL--IPS-VKIEGEVLLDGQDIY 73 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc--cCC-CCCceEEEECCEEcc
Confidence 368899999999986 99999999999999999996110 010 125799999987664
No 344
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.14 E-value=3.6e-11 Score=86.02 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=43.7
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~ 67 (109)
+|+++++++++|++ +|+|+||||||||+++|.|. .. ++.|+|.++|.++.
T Consensus 35 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl--------~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 35 AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRM--------NDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc--------cCccCCCCcceEEEECCEEcc
Confidence 67899999999986 99999999999999999997 43 46899999987664
No 345
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.13 E-value=3.9e-11 Score=84.28 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=45.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++++++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~--------~~p~~G~v~i~g~~~~ 64 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGF--------IKPDSGKILLNGKDIT 64 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------cCCCceEEEECCEEcC
Confidence 68899999999986 99999999999999999998 7788899999987654
No 346
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.13 E-value=3.2e-11 Score=90.04 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=45.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCce--EEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTS--EELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~--g~i~~~~~~i~ 67 (109)
+|++++++++++++ +|+|+||||||||+++|+|. ..++. |+|.++|.++.
T Consensus 20 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl--------~~p~~~~G~i~~~g~~~~ 72 (362)
T TIGR03258 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF--------VKAAGLTGRIAIADRDLT 72 (362)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCCCEEEEECCEECC
Confidence 67899999999986 99999999999999999998 77888 99999997653
No 347
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=3.9e-11 Score=84.76 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=43.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcc---cCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQ---HPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~---~~~~g~i~~~~~~i~ 67 (109)
+|++++++++++++ +|+|+||||||||+++|+|. . .++.|+|.++|.++.
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~~~~G~i~~~g~~i~ 70 (246)
T PRK14269 17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRM--------NDKIAKIDGLVEIEGKDVK 70 (246)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------cCCCCCCceEEEECCEecc
Confidence 68899999999986 99999999999999999997 4 256899999998664
No 348
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.13 E-value=1.2e-10 Score=77.10 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=56.4
Q ss_pred EEeCCCCcHHHHHHHHhcCcc--cc-cCCcccCceEEEEEC-CEEEEEEEcCCccc----ccccH---HhhhhcCCEEEE
Q 033893 25 FLGLDNAGKTTLLHMLKDERL--VQ-HQPTQHPTSEELSIG-KIKFKAFDLGGHQI----ARRVW---KDYYAKVIGSFK 93 (109)
Q Consensus 25 lvG~~GsGKSTll~~l~g~~~--~~-~~pt~~~~~g~i~~~-~~~i~~~d~~g~~~----~r~~~---~~~~~~~~~~v~ 93 (109)
++|++|||||||+++|.+.+. .. ..+|..+..+.+.++ +..+.+||++|... .+.++ ..+++++++++.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999998763 22 234556777888888 89999999999632 23333 345678999999
Q ss_pred EEeCCCc
Q 033893 94 TKKIEFR 100 (109)
Q Consensus 94 ~~~~~~~ 100 (109)
+.+.+..
T Consensus 81 v~d~~~~ 87 (176)
T cd01881 81 VVDASED 87 (176)
T ss_pred EEeccCC
Confidence 9887654
No 349
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.13 E-value=3.8e-11 Score=92.67 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=44.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--------~~p~~G~I~~~g~~~ 327 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGV--------DKRAGGEIRLNGKDI 327 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CcCCCCeEEECCEEC
Confidence 68999999999986 99999999999999999998 778889999988765
No 350
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=4.3e-11 Score=84.65 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=43.6
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~ 67 (109)
.+|+++++++++|++ +|+|+||||||||+++|+|. .. +..|+|.++|.++.
T Consensus 18 ~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~p~~~~~G~v~i~g~~~~ 74 (251)
T PRK14251 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRM--------NDDIENIKITGEIKFEGQNIY 74 (251)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhc--------cccccCCCcceEEEECCEEcc
Confidence 367899999999986 99999999999999999998 43 35799999987653
No 351
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.13 E-value=3.4e-11 Score=85.69 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=45.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|.++++++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 36 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~i~g~~i~ 86 (257)
T cd03288 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRM--------VDIFDGKIVIDGIDIS 86 (257)
T ss_pred ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcc--------cCCCCCeEEECCEEhh
Confidence 68899999999986 99999999999999999998 7788899999987654
No 352
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.13 E-value=3.2e-11 Score=85.81 Aligned_cols=46 Identities=28% Similarity=0.398 Sum_probs=42.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~ 63 (109)
+|++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.+++
T Consensus 19 vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl--------~~p~~G~i~~~~ 65 (251)
T PRK09544 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL--------VAPDEGVIKRNG 65 (251)
T ss_pred EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECC
Confidence 67899999999986 99999999999999999998 778889998876
No 353
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=3.7e-11 Score=88.53 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=44.6
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.++++++|++++|++ +|+|+||||||||+++|.|..- |...++.|+|.++|.++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~----~~~~~~~G~i~~~g~~i~ 76 (330)
T PRK15093 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTK----DNWRVTADRMRFDDIDLL 76 (330)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCC----CCCCCcceEEEECCEECC
Confidence 368999999999986 9999999999999999999821 001246799999998664
No 354
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.13 E-value=5e-11 Score=83.50 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=42.7
Q ss_pred HhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 12 ASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 12 ~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+++|++++|++ +|+|+||||||||++.|+|. ..++.|+|.+++.++.
T Consensus 16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~~~~G~i~~~g~~~~ 64 (232)
T PRK10771 16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGF--------LTPASGSLTLNGQDHT 64 (232)
T ss_pred ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCeecC
Confidence 378999999986 99999999999999999998 7788899999987654
No 355
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.13 E-value=3.4e-11 Score=88.67 Aligned_cols=55 Identities=11% Similarity=0.095 Sum_probs=44.6
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+|++++|++++|++ +|+|+||||||||+++|.|..- |.-.++.|+|.++|.++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~----~~~~~~~G~i~~~G~~i~ 76 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLID----YPGRVMAEKLEFNGQDLQ 76 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC----CCCCCcceEEEECCEECC
Confidence 378999999999996 9999999999999999999711 101146799999998654
No 356
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.13 E-value=3.9e-11 Score=86.56 Aligned_cols=50 Identities=14% Similarity=0.344 Sum_probs=44.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCce---EEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTS---EELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~---g~i~~~~~~i~ 67 (109)
++++++++++++++ +|+|+||||||||+++|+|. ..++. |+|.++|.++.
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~--------~~p~~g~~G~i~i~g~~~~ 75 (282)
T PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGL--------LLPDDNPNSKITVDGITLT 75 (282)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcc--------cCCCCCCCcEEEECCEECC
Confidence 78999999999986 99999999999999999998 66655 89999887653
No 357
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.13 E-value=2.5e-10 Score=76.12 Aligned_cols=79 Identities=15% Similarity=0.063 Sum_probs=57.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCc-------c-cccCCcc------cC--ce--EEEEE-----CCEEEEEEEcCCccccc
Q 033893 22 KILFLGLDNAGKTTLLHMLKDER-------L-VQHQPTQ------HP--TS--EELSI-----GKIKFKAFDLGGHQIAR 78 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~-------~-~~~~pt~------~~--~~--g~i~~-----~~~~i~~~d~~g~~~~r 78 (109)
.|+++|..|+|||||++++.+.. + ....|+. +. .. ..+.+ .+..+.+||++|+++++
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 37999999999999999998631 1 1122221 11 11 12222 34678899999999999
Q ss_pred ccHHhhhhcCCEEEEEEeCCCc
Q 033893 79 RVWKDYYAKVIGSFKTKKIEFR 100 (109)
Q Consensus 79 ~~~~~~~~~~~~~v~~~~~~~~ 100 (109)
..+..+++.+++++.++|.+..
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~ 103 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQG 103 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCC
Confidence 9999999999999999998654
No 358
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.12 E-value=3.4e-11 Score=86.23 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=47.9
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKA 68 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~ 68 (109)
.++++|||.++++++ +|+|+|||||||+-+.+.+. ..|+.|+|.++|.++..
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L--------~~pt~G~i~f~g~~i~~ 79 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL--------EEPTSGEILFEGKDITK 79 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcC--------cCCCCceEEEcCcchhh
Confidence 578999999999997 99999999999999999999 88999999999987653
No 359
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.12 E-value=3.6e-11 Score=92.94 Aligned_cols=50 Identities=26% Similarity=0.422 Sum_probs=45.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|.+++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 26 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~ 76 (510)
T PRK15439 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI--------VPPDSGTLEIGGNPCA 76 (510)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEECC
Confidence 68899999999986 99999999999999999998 7788999999887653
No 360
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=4.5e-11 Score=84.62 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=43.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|+++++++++|++ +|+|+||||||||+++|+|.... .| ..+..|+|.++|.++.
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~-~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 19 ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDL--IS-NVKIEGEVLLDGKNIY 74 (251)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCc--cc-CCCCccEEEECCEecc
Confidence 67899999999986 99999999999999999997110 00 0125799999987663
No 361
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.12 E-value=5.4e-11 Score=81.40 Aligned_cols=46 Identities=22% Similarity=0.355 Sum_probs=41.3
Q ss_pred hcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 13 SLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 13 ~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
+++|+++++++ +|+|+||||||||+++|+|. ..++.|++.+++.++
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~i 64 (195)
T PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGI--------MQPSSGNIYYKNCNI 64 (195)
T ss_pred EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCccc
Confidence 48899999986 99999999999999999998 778889999988755
No 362
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.12 E-value=3.9e-11 Score=92.76 Aligned_cols=50 Identities=24% Similarity=0.413 Sum_probs=46.4
Q ss_pred HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|+++++++++|+ ++|+|+||||||||++.|.|. ..|+.|+|.++|.++.
T Consensus 350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~--------~~p~~G~I~i~g~~i~ 400 (529)
T TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL--------LDPLQGEVTLDGVSVS 400 (529)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCEEhh
Confidence 7899999999998 599999999999999999998 8889999999998776
No 363
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=5.8e-11 Score=83.93 Aligned_cols=50 Identities=14% Similarity=0.257 Sum_probs=42.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC-----ceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP-----TSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~-----~~g~i~~~~~~i~ 67 (109)
++++++|.+++|++ +|+|+||||||||+++|+|. ..+ +.|+|.++|.++.
T Consensus 19 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--------~~~~~~~~~~G~i~~~g~~~~ 74 (252)
T PRK14272 19 AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRM--------HDLTPGARVTGRILLDGQDIY 74 (252)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------CCCCcCCCCceeEEECCEEcc
Confidence 67899999999986 99999999999999999997 433 3699999887654
No 364
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.12 E-value=5.1e-11 Score=84.86 Aligned_cols=50 Identities=20% Similarity=0.265 Sum_probs=43.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCc---eEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT---SEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~---~g~i~~~~~~i~ 67 (109)
++++++|++.+|++ +|+|+||||||||+++|+|. ..++ .|+|.++|.++.
T Consensus 19 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~--------~~p~~~~~G~i~~~g~~~~ 72 (262)
T PRK09984 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL--------ITGDKSAGSHIELLGRTVQ 72 (262)
T ss_pred EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhcc--------CCCCCCCceEEEECCEecc
Confidence 67899999999986 99999999999999999998 5543 499999997664
No 365
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=4.9e-11 Score=86.23 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=43.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~ 67 (109)
+|++++|.+++|++ +|+|+||||||||+++|+|. .. ++.|+|.++|..+.
T Consensus 54 il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl--------~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 54 ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRM--------NDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------CCcccCCCCceEEEECCEEcc
Confidence 67899999999986 99999999999999999998 43 56899999987653
No 366
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.12 E-value=4.2e-11 Score=84.43 Aligned_cols=50 Identities=22% Similarity=0.320 Sum_probs=43.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcc--cCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQ--HPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~--~~~~g~i~~~~~~i~ 67 (109)
+++++++.++++++ +|+|+||||||||+++|+|. . .++.|+|.+++.++.
T Consensus 16 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR--------EDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC--------ccCCCCceEEEECCCccc
Confidence 68899999999986 99999999999999999997 4 367899999886543
No 367
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.12 E-value=4.4e-11 Score=91.93 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=45.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 13 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~ 63 (491)
T PRK10982 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGI--------YQKDSGSILFQGKEID 63 (491)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--------CCCCceEEEECCEECC
Confidence 68899999999986 99999999999999999998 7788999999987653
No 368
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.12 E-value=7e-11 Score=90.56 Aligned_cols=82 Identities=9% Similarity=0.110 Sum_probs=61.4
Q ss_pred HHHHHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceE-EEEECCEEEEEEEcCCcccccccHHh
Q 033893 6 WFYGILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSE-ELSIGKIKFKAFDLGGHQIARRVWKD 83 (109)
Q Consensus 6 ~~~~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g-~i~~~~~~i~~~d~~g~~~~r~~~~~ 83 (109)
-+..+|+++++++++|++ +|+|+|||||||||+ .+. ..++.| +|.++|.++...+-...+..|.+++.
T Consensus 17 ~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l--------~~~~sGg~I~ldg~~~~~~~~~ai~~LR~VFQ~ 86 (504)
T TIGR03238 17 DLERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENK--------RKFSEGYEFFLDATHSFSPNKNAMETLDEIFDG 86 (504)
T ss_pred HHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCC--------CCCCCCCEEEECCEECCCCCHHHHHHHHHHHHh
Confidence 356789999999999996 999999999999999 444 344555 79999988763333334456778888
Q ss_pred hhhcCCEEEEEEeC
Q 033893 84 YYAKVIGSFKTKKI 97 (109)
Q Consensus 84 ~~~~~~~~v~~~~~ 97 (109)
|-++...+++-..+
T Consensus 87 fn~~~~~lIvaINl 100 (504)
T TIGR03238 87 FNQSNKPLIVGINM 100 (504)
T ss_pred hhcCCCCEEEEEeh
Confidence 87777777765443
No 369
>PRK15494 era GTPase Era; Provisional
Probab=99.11 E-value=7.2e-10 Score=82.07 Aligned_cols=78 Identities=17% Similarity=0.120 Sum_probs=57.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcccc----cCCcccCceEEEEECCEEEEEEEcCCccc-ccccH-------HhhhhcC
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLVQ----HQPTQHPTSEELSIGKIKFKAFDLGGHQI-ARRVW-------KDYYAKV 88 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~~----~~pt~~~~~g~i~~~~~~i~~~d~~g~~~-~r~~~-------~~~~~~~ 88 (109)
.+|+++|.+|+|||||++.+.+.++.. ..+|.....+.+..++..+.+||++|... ...+- ..++.++
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~a 132 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSA 132 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhC
Confidence 368999999999999999999887642 23344455677888899999999999742 22211 1346789
Q ss_pred CEEEEEEeCC
Q 033893 89 IGSFKTKKIE 98 (109)
Q Consensus 89 ~~~v~~~~~~ 98 (109)
|+++++.+-+
T Consensus 133 Dvil~VvD~~ 142 (339)
T PRK15494 133 DLVLLIIDSL 142 (339)
T ss_pred CEEEEEEECC
Confidence 9999888743
No 370
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.11 E-value=5.8e-11 Score=84.15 Aligned_cols=49 Identities=22% Similarity=0.277 Sum_probs=43.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. .. ..|+|.++|.++.
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl--------~~-~~G~i~~~g~~i~ 60 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGL--------LP-GSGSIQFAGQPLE 60 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC--------CC-CCeEEEECCEecC
Confidence 67899999999997 99999999999999999998 53 3799999987654
No 371
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.11 E-value=4.1e-11 Score=85.92 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=42.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI 64 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~ 64 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.+++.
T Consensus 39 il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl--------~~p~~G~I~~~g~ 86 (264)
T PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGS--------LSPTVGKVDRNGE 86 (264)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------cCCCceEEEECCE
Confidence 57889999999986 99999999999999999998 7788899999884
No 372
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=6e-11 Score=83.81 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=42.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i 66 (109)
++++++|.+++|++ +|+|+||||||||+++|+|. .. ++.|++.++|.++
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~~~~~~G~v~~~g~~~ 72 (249)
T PRK14253 18 ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRM--------NDLIEGVKITGKLTMDGEDI 72 (249)
T ss_pred eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhh--------cccccCCCCceEEEECCEEc
Confidence 68899999999986 99999999999999999997 33 3579999998765
No 373
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.11 E-value=5.9e-11 Score=83.92 Aligned_cols=52 Identities=19% Similarity=0.265 Sum_probs=43.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|+|... ..++.|+|.+++.++.
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~------~~~~~G~i~~~g~~~~ 74 (252)
T CHL00131 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPA------YKILEGDILFKGESIL 74 (252)
T ss_pred eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCc------CcCCCceEEECCEEcc
Confidence 68899999999986 9999999999999999999610 2456799999887654
No 374
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.11 E-value=4.5e-11 Score=88.18 Aligned_cols=51 Identities=10% Similarity=0.094 Sum_probs=44.8
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCc---eEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT---SEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~---~g~i~~~~~~i~ 67 (109)
.++++++|++++|++ +|+|+||||||||+++|.|. ..++ .|+|.++|.++.
T Consensus 30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl--------~~p~~~~sG~I~~~G~~i~ 84 (330)
T PRK09473 30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGL--------LAANGRIGGSATFNGREIL 84 (330)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcC--------CCCCCCCCeEEEECCEECC
Confidence 368899999999986 99999999999999999998 5553 799999998765
No 375
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.11 E-value=4.7e-11 Score=91.70 Aligned_cols=50 Identities=22% Similarity=0.175 Sum_probs=44.4
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
.+|++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.+++.++
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~--------~~p~~G~i~~~~~~~ 67 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE--------LPLLSGERQSQFSHI 67 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------CCCCCceEEECCccc
Confidence 378999999999986 99999999999999999998 778889998877554
No 376
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.11 E-value=3.8e-11 Score=90.21 Aligned_cols=47 Identities=21% Similarity=0.308 Sum_probs=43.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI 64 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~ 64 (109)
++++++|++++|++ +|+|+||||||||+++|.|. ..++.|+|.++|.
T Consensus 39 ~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl--------~~p~~G~I~idG~ 86 (382)
T TIGR03415 39 GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGL--------NPVSRGSVLVKDG 86 (382)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCCcEEEECCE
Confidence 47889999999997 99999999999999999998 7888999999985
No 377
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=7e-11 Score=93.43 Aligned_cols=54 Identities=19% Similarity=0.361 Sum_probs=49.4
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD 70 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d 70 (109)
.+|++++|++++|++ ++|||||+||||+...|... ..|..|+|.+||+++.-+|
T Consensus 482 ~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rf--------Y~PtsG~IllDG~~i~~~~ 536 (716)
T KOG0058|consen 482 PVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRF--------YDPTSGRILLDGVPISDIN 536 (716)
T ss_pred hhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHh--------cCCCCCeEEECCeehhhcC
Confidence 478999999999996 99999999999999999988 8889999999999988544
No 378
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=6e-11 Score=84.00 Aligned_cols=50 Identities=12% Similarity=0.256 Sum_probs=43.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~ 67 (109)
+|+++++++++|++ +|+|+||||||||+++|+|. .. ++.|+|.++|.++.
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~~~~~~G~v~~~g~~i~ 74 (252)
T PRK14256 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRM--------HDLVPSARVTGKILLDDTDIY 74 (252)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhc--------ccCCCCCCCceEEEECCEEcc
Confidence 68899999999986 99999999999999999997 42 25799999987654
No 379
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=6.4e-11 Score=91.38 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=44.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC--ceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP--TSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~--~~g~i~~~~~~i~ 67 (109)
+|++++|++.+|++ +|+|+||||||||+++|+|. ..+ +.|+|.++|.++.
T Consensus 20 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~~~~~~G~i~~~g~~~~ 72 (506)
T PRK13549 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV--------YPHGTYEGEIIFEGEELQ 72 (506)
T ss_pred eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCC--------CCCCCCCeEEEECCEECC
Confidence 68999999999986 99999999999999999998 554 6899999987653
No 380
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=4.9e-11 Score=84.81 Aligned_cols=50 Identities=20% Similarity=0.325 Sum_probs=43.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc--C---ceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH--P---TSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~--~---~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. .. + +.|+|.++|.++.
T Consensus 27 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~~~p~~~~~G~i~~~g~~~~ 82 (259)
T PRK14274 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLM--------IQMVPNVKLTGEMNYNGSNIL 82 (259)
T ss_pred eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh--------ccCCCCCCCceEEEECCEEcc
Confidence 67899999999986 99999999999999999997 33 2 4799999987664
No 381
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.10 E-value=1.1e-10 Score=80.88 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=41.2
Q ss_pred hcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 13 SLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 13 ~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++++ ++ +|+|+||||||||++.|.|. ..++.|+|.++|.++.
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~~ 62 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGL--------EKPDGGTIVLNGTVLF 62 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEecc
Confidence 88899988 86 99999999999999999998 7788899999987653
No 382
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.10 E-value=3.6e-10 Score=83.65 Aligned_cols=80 Identities=21% Similarity=0.248 Sum_probs=59.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc--cc-cCCcccCceEEEEE-CCEEEEEEEcCCccc----cccc---HHhhhhcCCE
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL--VQ-HQPTQHPTSEELSI-GKIKFKAFDLGGHQI----ARRV---WKDYYAKVIG 90 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~--~~-~~pt~~~~~g~i~~-~~~~i~~~d~~g~~~----~r~~---~~~~~~~~~~ 90 (109)
.|+|+|.++||||||+++|++.+. .. ..+|..|..|.+.+ ++.++.+||++|.-+ .+.+ |-.++.++++
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~v 239 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRL 239 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCE
Confidence 589999999999999999997642 22 23567788899988 567899999998632 1223 3345567999
Q ss_pred EEEEEeCCCcc
Q 033893 91 SFKTKKIEFRD 101 (109)
Q Consensus 91 ~v~~~~~~~~~ 101 (109)
++.+.|.+...
T Consensus 240 lI~ViD~s~~~ 250 (335)
T PRK12299 240 LLHLVDIEAVD 250 (335)
T ss_pred EEEEEcCCCCC
Confidence 99999987543
No 383
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.10 E-value=5.5e-11 Score=86.07 Aligned_cols=47 Identities=21% Similarity=0.392 Sum_probs=42.8
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~ 63 (109)
.+|+++++.+++|++ +|+|+||||||||+++|+|. ..++.|+|.+++
T Consensus 51 ~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl--------~~p~~G~I~i~g 98 (282)
T cd03291 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE--------LEPSEGKIKHSG 98 (282)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECC
Confidence 378899999999986 99999999999999999998 778889999887
No 384
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.10 E-value=6.8e-11 Score=84.48 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=43.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~ 67 (109)
++++++++++++++ +|+|+||||||||+++|+|. .. ++.|+|.+++.++.
T Consensus 25 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~~~~~~G~i~~~g~~i~ 80 (264)
T PRK14243 25 AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRL--------NDLIPGFRVEGKVTFHGKNLY 80 (264)
T ss_pred EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhh--------hcccCCCCCceEEEECCEEcc
Confidence 67899999999986 99999999999999999987 32 36799999987653
No 385
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=4.8e-11 Score=81.73 Aligned_cols=50 Identities=24% Similarity=0.330 Sum_probs=45.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++.+++|++..+++ .|.|+||||||||||+++|. ..|+.|+|.+++..+.
T Consensus 17 lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGL--------l~p~~G~v~~~~~~i~ 67 (209)
T COG4133 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGL--------LRPDAGEVYWQGEPIQ 67 (209)
T ss_pred eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcc--------cCCCCCeEEecCCCCc
Confidence 46789999999996 99999999999999999999 8999999999876554
No 386
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=5.9e-11 Score=83.99 Aligned_cols=50 Identities=26% Similarity=0.380 Sum_probs=43.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~ 67 (109)
++++++|++.+|++ +|+|+||||||||+++|+|. .. ++.|+|.++|.++.
T Consensus 20 ~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~--------~~~~~~~~~~G~i~~~g~~i~ 75 (251)
T PRK14244 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRM--------NDFVPNCKVKGELDIDGIDVY 75 (251)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh--------cccCCCCCcceEEEECCEehH
Confidence 67899999999986 99999999999999999997 32 35799999887653
No 387
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.09 E-value=9.1e-11 Score=87.19 Aligned_cols=47 Identities=17% Similarity=0.293 Sum_probs=42.6
Q ss_pred hcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 13 SLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 13 ~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl--------~~p~~G~I~~~g~~i~ 62 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGL--------TRPDEGEIVLNGRTLF 62 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEECc
Confidence 78899999986 99999999999999999998 7788999999997664
No 388
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.09 E-value=7.6e-11 Score=90.86 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=45.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|.+++|++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~--------~~p~~G~I~~~g~~i~ 317 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGA--------LPRTSGYVTLDGHEVV 317 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCC--------CCCCceEEEECCEECC
Confidence 47899999999986 99999999999999999998 7788899999987653
No 389
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=7.8e-11 Score=83.38 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=43.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCc-----eEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT-----SEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~-----~g~i~~~~~~i~ 67 (109)
++++++|++.+|++ +|+|+||||||||++.|+|. ..++ .|+|.++|.++.
T Consensus 19 il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~~~~~~G~v~~~g~~~~ 74 (251)
T PRK14249 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRM--------NDIVSGARLEGAVLLDNENIY 74 (251)
T ss_pred EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------cCccccCCcccEEEECCEEcc
Confidence 68899999999986 99999999999999999998 4443 699999887654
No 390
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=6.3e-11 Score=85.66 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=43.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|.+.+|++ +|+|+||||||||+++|.|..- ..| ..++.|+|.++|.++.
T Consensus 54 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--~~p-~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 54 AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMND--LIP-SCHTTGALMFDGEDIY 109 (286)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--cCC-CCCCceEEEECCEEhh
Confidence 67899999999986 9999999999999999999610 000 0037899999987653
No 391
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.09 E-value=6e-11 Score=81.30 Aligned_cols=45 Identities=31% Similarity=0.462 Sum_probs=39.4
Q ss_pred CCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 15 GLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 15 ~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++.++.+++ +|+|+||||||||++.++|. ..|..|+|.++|++..
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF--------~~P~~G~i~i~g~d~t 64 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGF--------ETPASGEILINGVDHT 64 (231)
T ss_pred EEeecCCcEEEEECCCCccHHHHHHHHHhc--------cCCCCceEEEcCeecC
Confidence 345677775 99999999999999999998 8889999999998766
No 392
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.09 E-value=7.1e-11 Score=91.02 Aligned_cols=50 Identities=16% Similarity=0.318 Sum_probs=45.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++++.+++|++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~--------~~p~~G~i~~~g~~~~ 318 (501)
T PRK11288 268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA--------TRRTAGQVYLDGKPID 318 (501)
T ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCC--------CcCCCceEEECCEECC
Confidence 67899999999986 99999999999999999998 7788899999887653
No 393
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.09 E-value=7.9e-11 Score=77.92 Aligned_cols=50 Identities=30% Similarity=0.419 Sum_probs=43.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++++++++++ +|+|+||||||||+++|.|. ..++.|++.+++..+.
T Consensus 14 ~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~--------~~~~~G~i~~~~~~~~ 64 (157)
T cd00267 14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL--------LKPTSGEILIDGKDIA 64 (157)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCccEEEECCEEcc
Confidence 57888999999886 99999999999999999998 7778899999886543
No 394
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=7.3e-11 Score=84.29 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=43.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|.|. .. ++.|+|.++|.++.
T Consensus 23 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~~~~~~G~i~~~g~~i~ 78 (261)
T PRK14263 23 AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRM--------NDLVKGFRFEGHVHFLGQDVY 78 (261)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcc--------cccccCCCCceEEEECCEecc
Confidence 67899999999986 99999999999999999998 33 26799999998664
No 395
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=8.8e-11 Score=83.20 Aligned_cols=55 Identities=15% Similarity=0.235 Sum_probs=43.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|+|..-. .|+ .++.|+|.++|.++.
T Consensus 21 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~~-~~~~G~i~~~g~~~~ 76 (253)
T PRK14261 21 ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL--IPG-CRITGDILYNGENIM 76 (253)
T ss_pred eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccC--CCC-CCcceEEEECCEEcc
Confidence 68899999999986 99999999999999999987110 010 124799999987664
No 396
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.08 E-value=9.2e-11 Score=90.49 Aligned_cols=51 Identities=22% Similarity=0.201 Sum_probs=45.1
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-CceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-PTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-~~~g~i~~~~~~i~ 67 (109)
.++++++|++++|++ +|+|+||||||||+++|.|. .. ++.|+|.++|.++.
T Consensus 276 ~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl--------~~~~~~G~i~~~g~~~~ 328 (506)
T PRK13549 276 KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGA--------YPGRWEGEIFIDGKPVK 328 (506)
T ss_pred ccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCC--------CCCCCCcEEEECCEECC
Confidence 378999999999986 99999999999999999998 66 47899999987653
No 397
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.08 E-value=6.4e-11 Score=91.28 Aligned_cols=50 Identities=22% Similarity=0.442 Sum_probs=45.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.+++.++.
T Consensus 19 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~p~~G~I~~~g~~i~ 69 (501)
T PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGN--------YQPDAGSILIDGQEMR 69 (501)
T ss_pred EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCCEEEECCEECC
Confidence 67899999999986 99999999999999999998 7788899999887653
No 398
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.08 E-value=6e-11 Score=94.85 Aligned_cols=55 Identities=24% Similarity=0.419 Sum_probs=49.8
Q ss_pred HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEc
Q 033893 9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDL 71 (109)
Q Consensus 9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~ 71 (109)
.+|+++++++++|+ |+|+|.||||||||+|.+.|. ..|..|+|.+||+++...|.
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl--------y~p~~G~I~~dg~dl~~i~~ 542 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL--------YKPQQGRILLDGVDLNDIDL 542 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCceEEECCEeHHhcCH
Confidence 47899999999997 699999999999999999999 88899999999999885553
No 399
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.08 E-value=6.7e-11 Score=93.46 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=46.2
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.++++++|++++|++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl--------~~p~~G~I~~~g~~i~ 389 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRL--------VESQGGEIIFNGQRID 389 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcC--------CCCCCcEEEECCEECC
Confidence 378999999999986 99999999999999999998 7788899999988664
No 400
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.08 E-value=1.1e-10 Score=86.68 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=42.5
Q ss_pred hcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 13 SLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 13 ~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl--------~~p~~G~I~~~g~~~~ 63 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGL--------TRPQKGRIVLNGRVLF 63 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEcc
Confidence 68899999986 99999999999999999998 7888999999987654
No 401
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.08 E-value=9e-11 Score=82.98 Aligned_cols=54 Identities=20% Similarity=0.243 Sum_probs=42.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
++++++|++++|++ +|+|+||||||||+++|+|... ..|. .++.|+|.++|.++
T Consensus 20 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~p~-~~~~G~i~~~g~~~ 74 (252)
T PRK14239 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMND--LNPE-VTITGSIVYNGHNI 74 (252)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccc--cCCC-CCccceEEECCEEC
Confidence 67899999999986 9999999999999999998610 0010 11479999988765
No 402
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.08 E-value=9.8e-11 Score=84.29 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=43.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~ 67 (109)
++++++|+++++++ +|+|+||||||||+++|.|. .. ++.|+|.+++..+.
T Consensus 36 il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl--------~~p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM--------NDKVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc--------CCcCCCCCCceEEEECCEEcc
Confidence 57899999999986 99999999999999999997 43 36899999987654
No 403
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.08 E-value=7e-11 Score=93.98 Aligned_cols=54 Identities=24% Similarity=0.355 Sum_probs=48.7
Q ss_pred HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893 9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD 70 (109)
Q Consensus 9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d 70 (109)
.+|+++++++++|+ ++|+|+||||||||++.|.|. ..|+.|+|.++|.++..++
T Consensus 467 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl--------~~p~~G~I~idg~~i~~~~ 521 (686)
T TIGR03797 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF--------ETPESGSVFYDGQDLAGLD 521 (686)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCCEEEECCEEcCcCC
Confidence 37899999999987 599999999999999999999 8889999999999887444
No 404
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.07 E-value=1.1e-10 Score=89.79 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=44.5
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC-ceEEEEECCEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP-TSEELSIGKIKF 66 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~-~~g~i~~~~~~i 66 (109)
.++++++|++.+|++ +|+|+||||||||+++|+|. ..| +.|+|.+++.++
T Consensus 274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~--------~~p~~~G~i~~~g~~~ 325 (500)
T TIGR02633 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGA--------YPGKFEGNVFINGKPV 325 (500)
T ss_pred cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCC--------CCCCCCeEEEECCEEC
Confidence 378999999999986 99999999999999999998 664 689999988765
No 405
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.07 E-value=1.4e-09 Score=83.11 Aligned_cols=84 Identities=15% Similarity=0.095 Sum_probs=62.7
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc--cccCCcc--cCceEEEEECCEEEEEEEcCCccccccc--------HHhhhh
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL--VQHQPTQ--HPTSEELSIGKIKFKAFDLGGHQIARRV--------WKDYYA 86 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~--~~~~pt~--~~~~g~i~~~~~~i~~~d~~g~~~~r~~--------~~~~~~ 86 (109)
+..+|+++|++|+|||||++++.+... .+..|.. .+..+.+.+++..+.+||++|....... ...+++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~ 281 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIK 281 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHh
Confidence 335789999999999999999998643 3333432 2345678889999999999998654332 236788
Q ss_pred cCCEEEEEEeCCCccc
Q 033893 87 KVIGSFKTKKIEFRDF 102 (109)
Q Consensus 87 ~~~~~v~~~~~~~~~~ 102 (109)
++|+++.++|.+...+
T Consensus 282 ~aD~il~V~D~s~~~s 297 (442)
T TIGR00450 282 QADLVIYVLDASQPLT 297 (442)
T ss_pred hCCEEEEEEECCCCCC
Confidence 9999999999865443
No 406
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.07 E-value=1.2e-09 Score=71.06 Aligned_cols=76 Identities=25% Similarity=0.278 Sum_probs=58.5
Q ss_pred EEeCCCCcHHHHHHHHhcCcc-cccCC--cccCceEEEEECCEEEEEEEcCCcccccc------cHHhhhh--cCCEEEE
Q 033893 25 FLGLDNAGKTTLLHMLKDERL-VQHQP--TQHPTSEELSIGKIKFKAFDLGGHQIARR------VWKDYYA--KVIGSFK 93 (109)
Q Consensus 25 lvG~~GsGKSTll~~l~g~~~-~~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~~r~------~~~~~~~--~~~~~v~ 93 (109)
|+|.+|+|||||++++.+... ....| |..+..+.+.+++..+.+||++|...+.. ++..++. ++++++.
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 589999999999999998753 22223 44456678888888999999999876553 4677775 8999999
Q ss_pred EEeCCCc
Q 033893 94 TKKIEFR 100 (109)
Q Consensus 94 ~~~~~~~ 100 (109)
+.+.+..
T Consensus 81 v~d~~~~ 87 (158)
T cd01879 81 VVDATNL 87 (158)
T ss_pred EeeCCcc
Confidence 9887653
No 407
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.07 E-value=6.3e-10 Score=71.80 Aligned_cols=73 Identities=22% Similarity=0.197 Sum_probs=51.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcc-----cccccHHhhhhcCCEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQ-----IARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~-----~~r~~~~~~~~~~~~~v~~~~ 96 (109)
+|+++|.+|+|||||++++.+.++. ..||. .+.+.+ ..||++|+. .++.+.+ +++++++++.+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~-----~~~~~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQ-----AVEYND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccce-----eEEEcC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence 6899999999999999999987542 22332 233333 578999873 2344433 4789999999999
Q ss_pred CCCccccc
Q 033893 97 IEFRDFYE 104 (109)
Q Consensus 97 ~~~~~~~~ 104 (109)
.+...++.
T Consensus 72 ~~~~~s~~ 79 (142)
T TIGR02528 72 ATDPESRF 79 (142)
T ss_pred CCCCCcCC
Confidence 87766543
No 408
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.07 E-value=2e-10 Score=80.41 Aligned_cols=53 Identities=28% Similarity=0.406 Sum_probs=48.7
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF 69 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~ 69 (109)
.+|+.+++++.++.. .++|.|||||||+++.++|. ..++.|.|.+++.++.-+
T Consensus 20 ~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~--------l~~t~G~I~Idg~dVtk~ 73 (263)
T COG1101 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD--------LKPTSGQILIDGVDVTKK 73 (263)
T ss_pred HHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCc--------cccCCceEEECceecccC
Confidence 478999999999995 99999999999999999998 889999999999998844
No 409
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.07 E-value=8.5e-11 Score=91.75 Aligned_cols=53 Identities=15% Similarity=0.298 Sum_probs=47.8
Q ss_pred HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893 10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD 70 (109)
Q Consensus 10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d 70 (109)
+|+++++++++|+ ++|+|+||||||||++.|.|. ..|+.|+|.++|.++..++
T Consensus 358 il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl--------~~p~~G~I~i~g~~i~~~~ 411 (582)
T PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF--------YDIDEGEILLDGHDLRDYT 411 (582)
T ss_pred cccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhc--------cCCCCceEEECCEEhhhcC
Confidence 7899999999887 599999999999999999999 8899999999999887443
No 410
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.07 E-value=1.1e-10 Score=90.52 Aligned_cols=51 Identities=10% Similarity=0.131 Sum_probs=44.8
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC-----ceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP-----TSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~-----~~g~i~~~~~~i~ 67 (109)
.+|++++|++.+|++ +|+|+||||||||+++|+|. ..+ +.|+|.++|.++.
T Consensus 23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~--------~~~~~~~~~~G~i~~~g~~i~ 79 (529)
T PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRL--------LPSPPVVYPSGDIRFHGESLL 79 (529)
T ss_pred eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCcCCccceEEEECCEecc
Confidence 378999999999986 99999999999999999998 443 6899999998765
No 411
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.07 E-value=1.1e-10 Score=89.83 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=45.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|+++++.+++|++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~i~ 313 (491)
T PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGI--------REKSAGTITLHGKKIN 313 (491)
T ss_pred ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCC--------CcCCccEEEECCEECC
Confidence 68899999999986 99999999999999999998 7788899999987653
No 412
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.06 E-value=1.1e-10 Score=89.76 Aligned_cols=50 Identities=22% Similarity=0.237 Sum_probs=43.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC--ceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP--TSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~--~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..+ +.|+|.++|.++.
T Consensus 16 il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~--------~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGV--------YPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCCCeEEEECCEECC
Confidence 68899999999986 99999999999999999998 544 6899999887653
No 413
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=1.1e-10 Score=82.52 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=42.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
++++++|++.+|++ +|+|+||||||||+++|+|..-. .| ..+..|+|.++|.++.
T Consensus 20 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~-~~~~~G~i~~~g~~~~ 75 (252)
T PRK14255 20 ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL--IP-GVTITGNVSLRGQNIY 75 (252)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc--CC-CCCcccEEEEcCEEcc
Confidence 67899999999986 99999999999999999996100 00 0014799999887653
No 414
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.06 E-value=1.1e-10 Score=83.62 Aligned_cols=50 Identities=18% Similarity=0.342 Sum_probs=43.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~ 67 (109)
++++++|.+++|++ +|+|+||||||||+++|+|. .. ++.|+|.++|.++.
T Consensus 40 il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl--------~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRM--------NDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhc--------CCCccCCCCceEEEECCEECc
Confidence 67899999999986 99999999999999999997 33 36799999987654
No 415
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=8.9e-11 Score=93.02 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=42.6
Q ss_pred HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCE
Q 033893 10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI 64 (109)
Q Consensus 10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~ 64 (109)
+|++++|.+.+|+ ++|+|+||||||||+++|+|. ..|+.|+|.+++.
T Consensus 16 ~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~--------~~pd~G~I~~~~~ 63 (638)
T PRK10636 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNE--------ISADGGSYTFPGN 63 (638)
T ss_pred eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEecCC
Confidence 6899999999987 599999999999999999998 7788999998763
No 416
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=1.2e-10 Score=84.86 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=43.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~ 67 (109)
+|++++|++.+|++ +|+|+||||||||+++|+|. .. ++.|+|.++|.++.
T Consensus 60 iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl--------~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 60 ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRM--------NDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------ccccCCCCCceEEEECCEEcc
Confidence 68899999999986 99999999999999999997 32 46899999987653
No 417
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=1.3e-10 Score=82.75 Aligned_cols=50 Identities=12% Similarity=0.168 Sum_probs=42.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC-----ceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP-----TSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~-----~~g~i~~~~~~i~ 67 (109)
+++++++++++|++ +|+|+||||||||++.|+|. ..+ ..|+|.++|.++.
T Consensus 22 il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl--------~~~~~~~~~~G~i~~~g~~i~ 77 (259)
T PRK14260 22 AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI--------SELEGPVKVEGVVDFFGQNIY 77 (259)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhh--------cCcccCCccceEEEECCEecc
Confidence 67899999999986 99999999999999999997 332 4799999987653
No 418
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=9.8e-11 Score=82.75 Aligned_cols=50 Identities=16% Similarity=0.311 Sum_probs=43.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~ 67 (109)
++++++++++++++ +|+|+||||||||+++|.|. .+ ++.|+|.++|.++.
T Consensus 18 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~~~~~~G~v~~~g~~i~ 73 (250)
T PRK14266 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRM--------NDLIPGFRHEGHIYLDGVDIY 73 (250)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh--------hccCCCCCCccEEEECCEEcc
Confidence 67899999999986 99999999999999999986 32 36799999997764
No 419
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.06 E-value=1.1e-10 Score=92.15 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=45.3
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
.++++++|++.+|++ +|+|+||||||||+++|+|. ..++.|+|.+++..+
T Consensus 30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl--------l~p~~G~i~~~g~~~ 80 (623)
T PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL--------LEQAGGLVQCDKMLL 80 (623)
T ss_pred eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcC--------CCCCCeEEEECCEEe
Confidence 378899999999986 99999999999999999998 778889999988765
No 420
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.05 E-value=1.2e-10 Score=83.75 Aligned_cols=50 Identities=24% Similarity=0.292 Sum_probs=42.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. .. +..|+|.++|.++.
T Consensus 35 ~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl--------~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 35 ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRM--------NDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcc--------cccccCCCcCceEEECCEecc
Confidence 67899999999986 99999999999999999987 32 24799999887653
No 421
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.05 E-value=2.2e-09 Score=69.44 Aligned_cols=79 Identities=18% Similarity=0.211 Sum_probs=57.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCccc--ccCCcc--cCceEEEEECCEEEEEEEcCCccccccc--------HHhhhhcCC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLV--QHQPTQ--HPTSEELSIGKIKFKAFDLGGHQIARRV--------WKDYYAKVI 89 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~--~~~pt~--~~~~g~i~~~~~~i~~~d~~g~~~~r~~--------~~~~~~~~~ 89 (109)
+|+++|++||||||+++.+.+.+.. ...|.. .+..+.+..++..+.+||++|....... -..++.+++
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 82 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEAD 82 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCC
Confidence 6899999999999999999987642 222322 2334667778889999999996543221 124567899
Q ss_pred EEEEEEeCCCc
Q 033893 90 GSFKTKKIEFR 100 (109)
Q Consensus 90 ~~v~~~~~~~~ 100 (109)
+++.+.+.+..
T Consensus 83 ~~v~v~d~~~~ 93 (157)
T cd04164 83 LVLFVIDASRG 93 (157)
T ss_pred EEEEEEECCCC
Confidence 99999988753
No 422
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.05 E-value=8.5e-11 Score=80.34 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=50.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC---CEEEEEEEcCCccc---ccccHH
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG---KIKFKAFDLGGHQI---ARRVWK 82 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~---~~~i~~~d~~g~~~---~r~~~~ 82 (109)
.+++++|+..++++ +|+|+||||||||+++|++. ..|+.|++.+. +....++.++..++ .|+-|.
T Consensus 21 gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~r--------l~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG 92 (258)
T COG4107 21 GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR--------LTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWG 92 (258)
T ss_pred CccccceeecCCcEEEEEecCCCcHHhHHHHHhcc--------cCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccc
Confidence 36789999999998 99999999999999999988 88889999885 34455555555443 345553
No 423
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.05 E-value=1.7e-09 Score=83.11 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=61.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCccc--ccCCccc--CceEEEEECCEEEEEEEcCCccc--------ccccHHhhhhcC
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLV--QHQPTQH--PTSEELSIGKIKFKAFDLGGHQI--------ARRVWKDYYAKV 88 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~--~~~pt~~--~~~g~i~~~~~~i~~~d~~g~~~--------~r~~~~~~~~~~ 88 (109)
.+|+|+|.+|+|||||++++.+.+.. ...|... ...+.+.+++..+.+||++|.+. ++..+..++.++
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 118 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTA 118 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhC
Confidence 47899999999999999999987642 3334332 33456677888999999999762 344567789999
Q ss_pred CEEEEEEeCCCc
Q 033893 89 IGSFKTKKIEFR 100 (109)
Q Consensus 89 ~~~v~~~~~~~~ 100 (109)
|+++.++|.+..
T Consensus 119 D~il~VvD~~~~ 130 (472)
T PRK03003 119 DAVLFVVDATVG 130 (472)
T ss_pred CEEEEEEECCCC
Confidence 999999998654
No 424
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.05 E-value=1.4e-10 Score=82.10 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=42.7
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc--CceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH--PTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~--~~~g~i~~~~~~i~ 67 (109)
++++++|++++|++ +|+|+||||||||+++|+|..-. .. ++.|+|.++|.++.
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~-----~~~~~~~G~i~~~g~~~~ 73 (250)
T PRK14245 18 ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDL-----IPATRLEGEIRIDGRNIY 73 (250)
T ss_pred EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcc-----cCCCCCceEEEECCEecc
Confidence 67899999999986 99999999999999999985100 11 24799999988765
No 425
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.04 E-value=1e-10 Score=91.62 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=47.8
Q ss_pred HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893 10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD 70 (109)
Q Consensus 10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d 70 (109)
+|+++++++++|+ ++|+|+||||||||++.|.|. ..|..|+|.++|.++..+|
T Consensus 356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl--------~~p~~G~I~idg~~i~~~~ 409 (592)
T PRK10790 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY--------YPLTEGEIRLDGRPLSSLS 409 (592)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------cCCCCceEEECCEEhhhCC
Confidence 6899999999987 599999999999999999999 8888999999998877443
No 426
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.04 E-value=1.2e-10 Score=91.07 Aligned_cols=52 Identities=27% Similarity=0.433 Sum_probs=47.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF 69 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~ 69 (109)
+|+++++++++|+. +|+|+||||||||++.|.|. ..++.|+|.++|.++..+
T Consensus 355 il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~--------~~p~~G~I~i~g~~i~~~ 407 (574)
T PRK11160 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA--------WDPQQGEILLNGQPIADY 407 (574)
T ss_pred ceecceEEECCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCceEEECCEEhhhC
Confidence 78999999999975 99999999999999999998 888899999999887743
No 427
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.04 E-value=1.2e-10 Score=91.16 Aligned_cols=51 Identities=25% Similarity=0.370 Sum_probs=46.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF 69 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~ 69 (109)
+|+++++++++|+. +|+|+||||||||++.|.|. . |..|+|.++|.++..+
T Consensus 365 vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~--------~-p~~G~I~i~g~~i~~~ 416 (588)
T PRK11174 365 LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF--------L-PYQGSLKINGIELREL 416 (588)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------C-CCCcEEEECCEecccC
Confidence 68999999999874 99999999999999999998 7 7789999999888743
No 428
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.04 E-value=1.5e-10 Score=83.47 Aligned_cols=49 Identities=20% Similarity=0.343 Sum_probs=43.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|.+++|++ +|+|+||||||||+++|.|. .. ..|+|.++|.++.
T Consensus 19 ~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl--------~~-~~G~I~i~g~~i~ 68 (275)
T cd03289 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL--------LN-TEGDIQIDGVSWN 68 (275)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhh--------cC-CCcEEEECCEEhh
Confidence 68999999999985 99999999999999999998 55 5799999998664
No 429
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.04 E-value=9.7e-10 Score=81.80 Aligned_cols=82 Identities=20% Similarity=0.173 Sum_probs=62.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cc--cCCcccCceEEEEE-CCEEEEEEEcCCc---------ccccccHHhhhhc
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQ--HQPTQHPTSEELSI-GKIKFKAFDLGGH---------QIARRVWKDYYAK 87 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~--~~pt~~~~~g~i~~-~~~~i~~~d~~g~---------~~~r~~~~~~~~~ 87 (109)
.+|+|+|.+|||||||++++.+.+. .+ ..+|..+....+.+ ++..+.+||++|. +.++..+ .++.+
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ 268 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVRE 268 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHHHh
Confidence 5689999999999999999998764 22 23566677788888 5789999999996 2223322 35779
Q ss_pred CCEEEEEEeCCCcccc
Q 033893 88 VIGSFKTKKIEFRDFY 103 (109)
Q Consensus 88 ~~~~v~~~~~~~~~~~ 103 (109)
+|.++.+.|.+...+.
T Consensus 269 ADlil~VvD~s~~~~~ 284 (351)
T TIGR03156 269 ADLLLHVVDASDPDRE 284 (351)
T ss_pred CCEEEEEEECCCCchH
Confidence 9999999998765443
No 430
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.04 E-value=9.2e-11 Score=93.57 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=48.0
Q ss_pred HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893 9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD 70 (109)
Q Consensus 9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d 70 (109)
.+|+++++++++|+ ++|+|+||||||||++.|.|. ..|+.|+|.++|.++..++
T Consensus 493 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl--------~~p~~G~I~idg~~i~~~~ 547 (710)
T TIGR03796 493 PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL--------YQPWSGEILFDGIPREEIP 547 (710)
T ss_pred CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCEeHHHCC
Confidence 37899999999987 599999999999999999999 8888999999998876443
No 431
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.04 E-value=1.3e-10 Score=82.89 Aligned_cols=51 Identities=16% Similarity=0.297 Sum_probs=42.7
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc-----CceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH-----PTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-----~~~g~i~~~~~~i~ 67 (109)
.++++++|+++++++ +|+|+||||||||+++|+|. .. ++.|+|.+++..+.
T Consensus 30 ~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~~~~~~~sG~i~~~g~~~~ 86 (265)
T PRK14252 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRM--------HDLYPGNHYEGEIILHPDNVN 86 (265)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc--------cCCCCCCCcccEEEEcCcccc
Confidence 368899999999986 99999999999999999997 33 26789988876543
No 432
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.03 E-value=1.8e-10 Score=89.04 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=44.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.|++++|.+++|++ +|+|+||||||||+++|.|. ..++.|+|.+++.++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl--------~~p~~G~i~~~g~~i~ 328 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGL--------RPARGGRIMLNGKEIN 328 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCC--------CCCCCcEEEECCEECC
Confidence 47889999999986 99999999999999999998 7778899999887553
No 433
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.03 E-value=1.3e-10 Score=90.20 Aligned_cols=46 Identities=15% Similarity=0.388 Sum_probs=41.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~ 63 (109)
++++++|++.+|++ +|+|+||||||||+++|+|. ..++.|+|.+++
T Consensus 16 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl--------~~p~~G~i~~~~ 62 (530)
T PRK15064 16 LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGD--------LEPSAGNVSLDP 62 (530)
T ss_pred eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEecC
Confidence 68899999999986 99999999999999999998 777889998875
No 434
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.03 E-value=1.9e-10 Score=82.03 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=41.7
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC-----ceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP-----TSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~-----~~g~i~~~~~~i 66 (109)
+|++++|.++++++ +|+|+||||||||+++|+|. ..+ ..|+|.++|.++
T Consensus 22 il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl--------~~~~g~i~~~G~i~~~g~~i 76 (261)
T PRK14258 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM--------NELESEVRVEGRVEFFNQNI 76 (261)
T ss_pred EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcc--------cCCCCCccccceEEECCEEh
Confidence 68899999999986 99999999999999999998 333 357888887655
No 435
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.03 E-value=1.6e-10 Score=89.43 Aligned_cols=51 Identities=22% Similarity=0.385 Sum_probs=46.7
Q ss_pred HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEE
Q 033893 10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKA 68 (109)
Q Consensus 10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~ 68 (109)
+|+++++++++|+ ++|+|+||||||||++.|.|. ..++.|+|.++|.++..
T Consensus 337 il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~--------~~~~~G~I~~~g~~i~~ 388 (529)
T TIGR02857 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF--------VDPTEGSIAVNGVPLAD 388 (529)
T ss_pred cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCEehhh
Confidence 6899999999997 599999999999999999999 88889999999987763
No 436
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.03 E-value=1.4e-10 Score=91.83 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=42.4
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~ 63 (109)
.+|++++|.+++|++ +|+|+||||||||+++|+|. ..++.|+|.+++
T Consensus 17 ~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~--------~~p~~G~I~~~~ 64 (635)
T PRK11147 17 PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGE--------VLLDDGRIIYEQ 64 (635)
T ss_pred eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCC--------CCCCCeEEEeCC
Confidence 368899999999875 99999999999999999998 778899999876
No 437
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.03 E-value=8e-12 Score=86.51 Aligned_cols=51 Identities=24% Similarity=0.335 Sum_probs=47.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKA 68 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~ 68 (109)
+++++++.+++|+| +++|||||||||.++++.|. +.++.|+|.+++.++..
T Consensus 19 Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Gl--------v~~d~G~i~ld~~diT~ 70 (243)
T COG1137 19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGL--------VRPDSGKILLDDEDITK 70 (243)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEE--------EecCCceEEECCccccc
Confidence 57889999999997 99999999999999999999 99999999999988873
No 438
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.03 E-value=1.9e-10 Score=89.14 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=44.1
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+|++++|++++|++ +|+|+||||||||+++|.|. .. +.|+|.++|.++.
T Consensus 300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl--------~~-~~G~i~~~g~~i~ 350 (529)
T PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL--------IN-SQGEIWFDGQPLH 350 (529)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCc--------CC-CCcEEEECCEEcc
Confidence 378999999999986 99999999999999999998 53 6799999987664
No 439
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.03 E-value=1.8e-10 Score=81.52 Aligned_cols=51 Identities=27% Similarity=0.473 Sum_probs=45.7
Q ss_pred HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+|+++++++++++ ++|+|+||||||||++.+.|. ..+..|+|.+++..+.
T Consensus 18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL--------l~p~~G~v~~~g~~~~ 69 (235)
T COG1122 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL--------LKPTSGEVLVDGLDTS 69 (235)
T ss_pred eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCc--------CcCCCCEEEECCeecc
Confidence 46889999999997 599999999999999999999 8888899998887765
No 440
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.02 E-value=2.8e-09 Score=76.41 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=56.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcccc--cCC--cccCceEEEEECCEEEEEEEcCCccccc-c-------cHHhhhhcC
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLVQ--HQP--TQHPTSEELSIGKIKFKAFDLGGHQIAR-R-------VWKDYYAKV 88 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~~--~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~~r-~-------~~~~~~~~~ 88 (109)
|+|+++|.+|||||||+++|.+.++.. ..| |.....|-...++..+.++|++|....+ . ....++.++
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 578999999999999999999987532 212 2223334344456778899999964321 1 134567899
Q ss_pred CEEEEEEeCCCcc
Q 033893 89 IGSFKTKKIEFRD 101 (109)
Q Consensus 89 ~~~v~~~~~~~~~ 101 (109)
|.++.+.|.+...
T Consensus 81 Dvvl~VvD~~~~~ 93 (270)
T TIGR00436 81 DLILFVVDSDQWN 93 (270)
T ss_pred CEEEEEEECCCCC
Confidence 9999999876543
No 441
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.02 E-value=3.4e-09 Score=69.87 Aligned_cols=80 Identities=13% Similarity=0.083 Sum_probs=53.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCccc-cc--CCcccCceEEEEECCEEEEEEEcCCcccc----cccH-----HhhhhcCC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLV-QH--QPTQHPTSEELSIGKIKFKAFDLGGHQIA----RRVW-----KDYYAKVI 89 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~-~~--~pt~~~~~g~i~~~~~~i~~~d~~g~~~~----r~~~-----~~~~~~~~ 89 (109)
+|+++|.+|+|||||++++.+.++. .. .+|..+..+.+..++..+.+||++|.... +..+ ......++
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 5799999999999999999987653 21 22444555666667789999999997421 1101 11112357
Q ss_pred EEEEEEeCCCcc
Q 033893 90 GSFKTKKIEFRD 101 (109)
Q Consensus 90 ~~v~~~~~~~~~ 101 (109)
+++.+++.+...
T Consensus 82 ~~l~v~d~~~~~ 93 (168)
T cd01897 82 AVLFLFDPSETC 93 (168)
T ss_pred cEEEEEeCCccc
Confidence 888888876543
No 442
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.02 E-value=2e-10 Score=81.88 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=40.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~ 63 (109)
++++++|.+.++++ +|+|+||||||||++.|+|. ..++.|+|.++|
T Consensus 25 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~--------~~~~~G~v~~~G 71 (257)
T PRK14246 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL--------IEIYDSKIKVDG 71 (257)
T ss_pred eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCcCceeEcC
Confidence 67899999999986 99999999999999999998 667777766665
No 443
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.02 E-value=1.3e-10 Score=92.90 Aligned_cols=52 Identities=17% Similarity=0.399 Sum_probs=47.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF 69 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~ 69 (109)
+|+++++++++|+. +|+|+||||||||++.|.|. ..+..|+|.++|.++..+
T Consensus 496 vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl--------~~p~~G~I~idg~~i~~~ 548 (711)
T TIGR00958 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL--------YQPTGGQVLLDGVPLVQY 548 (711)
T ss_pred cccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc--------cCCCCCEEEECCEEHHhc
Confidence 78999999999985 99999999999999999999 888899999999877643
No 444
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.02 E-value=1.7e-10 Score=79.51 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=73.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEEC-C--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIG-K--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~-~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
..+++|||..++|||.|+-..+.+.| .+++||+-.+ .-.+.++ | +.+.+||.+||+.+..+++-.|.++|.++.+
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~c 83 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLC 83 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEE
Confidence 45789999999999999999998888 5789987422 3567774 6 6778999999999988888899999999999
Q ss_pred EeCCCccccccc
Q 033893 95 KKIEFRDFYEVE 106 (109)
Q Consensus 95 ~~~~~~~~~~~~ 106 (109)
+++..+.+++..
T Consensus 84 fsv~~p~S~~nv 95 (198)
T KOG0393|consen 84 FSVVSPESFENV 95 (198)
T ss_pred EEcCChhhHHHH
Confidence 999888887753
No 445
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.01 E-value=3.3e-11 Score=83.31 Aligned_cols=53 Identities=21% Similarity=0.420 Sum_probs=47.9
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC-EEEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK-IKFKAF 69 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~-~~i~~~ 69 (109)
.+|++++|.+.+|++ +|+|||||||||++..|+|. ..|..|++.+++ .++.-+
T Consensus 19 ~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGK--------trp~~G~v~f~g~~dl~~~ 73 (249)
T COG4674 19 KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGK--------TRPQEGEVLFDGDTDLTKL 73 (249)
T ss_pred eeeeeeEEEecCCeEEEEECCCCCCceeeeeeeccc--------CCCCcceEEEcCchhhccC
Confidence 578999999999999 99999999999999999998 788899999988 666644
No 446
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.01 E-value=1.9e-10 Score=89.83 Aligned_cols=45 Identities=29% Similarity=0.318 Sum_probs=41.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG 62 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~ 62 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++
T Consensus 22 il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~--------~~p~~G~i~~~ 67 (556)
T PRK11819 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV--------DKEFEGEARPA 67 (556)
T ss_pred eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEec
Confidence 78999999999986 99999999999999999998 77788998875
No 447
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.01 E-value=2.1e-10 Score=89.22 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=45.9
Q ss_pred HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|+++++++++|+ ++|+|+||||||||++.|.|. ..|+.|+|.++|+++.
T Consensus 338 ~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~--------~~~~~G~i~~~g~~~~ 388 (547)
T PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL--------YQPQSGEILLDGKPVT 388 (547)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCeEEEECCEECC
Confidence 6889999999987 599999999999999999998 8889999999998765
No 448
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.01 E-value=1.3e-10 Score=92.74 Aligned_cols=53 Identities=25% Similarity=0.361 Sum_probs=47.5
Q ss_pred HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893 9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF 69 (109)
Q Consensus 9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~ 69 (109)
.+|+++++++++|+ ++|+|+||||||||++.|.|. ..|+.|+|.++|.++..+
T Consensus 488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl--------~~p~~G~I~idg~~i~~~ 541 (708)
T TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF--------FQARSGEILLNGFSLKDI 541 (708)
T ss_pred cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhcc--------CCCCCcEEEECCEEHHHc
Confidence 47899999999887 699999999999999999999 888899999999877643
No 449
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.01 E-value=6e-09 Score=65.45 Aligned_cols=77 Identities=23% Similarity=0.325 Sum_probs=54.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc--cccCC--cccCceEEEEECCEEEEEEEcCCcccc----------cccHHhhhhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL--VQHQP--TQHPTSEELSIGKIKFKAFDLGGHQIA----------RRVWKDYYAK 87 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~--~~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~~----------r~~~~~~~~~ 87 (109)
+|+++|.+|||||||++.|.+.+. ....| |..+..+.+.+++..+.+.|++|-... +...+ ....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~-~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLE-QISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHH-HHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHH-HHHH
Confidence 689999999999999999998643 22222 233444677788999889999885321 12323 3368
Q ss_pred CCEEEEEEeCCC
Q 033893 88 VIGSFKTKKIEF 99 (109)
Q Consensus 88 ~~~~v~~~~~~~ 99 (109)
++.++.+.+...
T Consensus 80 ~d~ii~vv~~~~ 91 (116)
T PF01926_consen 80 SDLIIYVVDASN 91 (116)
T ss_dssp ESEEEEEEETTS
T ss_pred CCEEEEEEECCC
Confidence 899998888544
No 450
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.01 E-value=3.7e-10 Score=80.67 Aligned_cols=43 Identities=23% Similarity=0.382 Sum_probs=37.5
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS 60 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~ 60 (109)
.+++++++ +++|++ +|+|+||||||||+++|+|. ..++.|+|.
T Consensus 15 ~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl--------~~p~~G~I~ 58 (255)
T cd03236 15 FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGK--------LKPNLGKFD 58 (255)
T ss_pred hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCC--------cCCCCceEe
Confidence 36888984 777875 99999999999999999999 778889986
No 451
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.00 E-value=1.9e-10 Score=91.64 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=47.3
Q ss_pred HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893 10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF 69 (109)
Q Consensus 10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~ 69 (109)
+|+++++++++|+ ++|+|+||||||||++.|.|. ..++.|+|.++|.++..+
T Consensus 480 vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl--------~~p~~G~I~idg~~l~~~ 532 (694)
T TIGR03375 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL--------YQPTEGSVLLDGVDIRQI 532 (694)
T ss_pred ceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCceEEECCEEhhhC
Confidence 7899999999987 599999999999999999999 888899999999887744
No 452
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.00 E-value=4.6e-10 Score=78.36 Aligned_cols=42 Identities=24% Similarity=0.308 Sum_probs=36.6
Q ss_pred cccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 17 WQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 17 ~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
.+++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~--------~~~~~G~i~~~g~~~ 44 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGL--------IPPAKGTVKVAGASP 44 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCccc
Confidence 4667875 99999999999999999998 778889999998653
No 453
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.00 E-value=1.9e-09 Score=79.68 Aligned_cols=80 Identities=19% Similarity=0.185 Sum_probs=59.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc--cc-cCCcccCceEEEEECC-EEEEEEEcCCcccc-------cccHHhhhhcCC
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL--VQ-HQPTQHPTSEELSIGK-IKFKAFDLGGHQIA-------RRVWKDYYAKVI 89 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~--~~-~~pt~~~~~g~i~~~~-~~i~~~d~~g~~~~-------r~~~~~~~~~~~ 89 (109)
..|+|+|.++||||||+++|++.+. .+ ..+|..|..|.+.+++ ..+.++|++|.... ...+-.++.+++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 3589999999999999999997642 22 2346678889998887 89999999986421 222334455799
Q ss_pred EEEEEEeCCCc
Q 033893 90 GSFKTKKIEFR 100 (109)
Q Consensus 90 ~~v~~~~~~~~ 100 (109)
+++.+.|.+..
T Consensus 238 ~ll~VvD~s~~ 248 (329)
T TIGR02729 238 VLLHLIDISPL 248 (329)
T ss_pred EEEEEEcCccc
Confidence 99999998654
No 454
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.00 E-value=2.1e-10 Score=89.80 Aligned_cols=52 Identities=21% Similarity=0.344 Sum_probs=47.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF 69 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~ 69 (109)
+|+++++++++|+. +|+|+||||||||++.|.|. ..|..|+|.++|.++..+
T Consensus 350 iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl--------~~p~~G~I~i~g~~i~~~ 402 (588)
T PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRV--------FDPQSGRILIDGTDIRTV 402 (588)
T ss_pred eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcC--------cCCCCCEEEECCEEhhhC
Confidence 68999999999875 99999999999999999999 888899999999887743
No 455
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.00 E-value=2.7e-10 Score=88.34 Aligned_cols=46 Identities=28% Similarity=0.430 Sum_probs=42.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~ 63 (109)
++++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.+++
T Consensus 334 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~--------~~p~~G~i~~~~ 380 (530)
T PRK15064 334 LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGE--------LEPDSGTVKWSE 380 (530)
T ss_pred eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCeEEEECC
Confidence 68899999999986 99999999999999999998 778889998876
No 456
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.99 E-value=2.8e-10 Score=88.43 Aligned_cols=48 Identities=23% Similarity=0.375 Sum_probs=44.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIK 65 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~ 65 (109)
+|++++|.+++|++ +|+|+||||||||+++|+|. ..++.|+|.+++..
T Consensus 39 IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL--------l~P~sGeI~I~G~~ 87 (549)
T PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV--------TMPNKGTVDIKGSA 87 (549)
T ss_pred EEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC--------CCCCceEEEECCEe
Confidence 68899999999986 99999999999999999998 77889999998864
No 457
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.99 E-value=3.1e-10 Score=88.55 Aligned_cols=50 Identities=20% Similarity=0.336 Sum_probs=46.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|+++++++++|++ +|+|+||||||||++.|.|. ..|+.|+|.++|.++.
T Consensus 357 ~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~--------~~p~~G~i~~~g~~i~ 407 (555)
T TIGR01194 357 ALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL--------YIPQEGEILLDGAAVS 407 (555)
T ss_pred eeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEECC
Confidence 68999999999985 99999999999999999998 8889999999998776
No 458
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.99 E-value=2.2e-10 Score=89.33 Aligned_cols=52 Identities=23% Similarity=0.425 Sum_probs=46.7
Q ss_pred HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893 10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF 69 (109)
Q Consensus 10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~ 69 (109)
+|+++++++++|+ ++|+|+||||||||++.|.|. ..+..|+|.++|.++..+
T Consensus 355 iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl--------~~p~~G~I~i~g~~i~~~ 407 (576)
T TIGR02204 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRF--------YDPQSGRILLDGVDLRQL 407 (576)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHHhc--------cCCCCCEEEECCEEHHhc
Confidence 6899999999987 599999999999999999998 888899999999877633
No 459
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.99 E-value=3.1e-10 Score=88.74 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=45.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|+++++++++|+. +|+|+||||||||++.|.|. ..|+.|+|.++|.++.
T Consensus 330 ~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~--------~~p~~G~i~~~g~~~~ 380 (569)
T PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH--------FDVSEGDIRFHDIPLT 380 (569)
T ss_pred cccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcc--------cCCCCCEEEECCEEHh
Confidence 68999999999985 99999999999999999998 7888999999998765
No 460
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.99 E-value=2.2e-10 Score=88.57 Aligned_cols=45 Identities=33% Similarity=0.450 Sum_probs=41.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG 62 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~ 62 (109)
+|++++|++++|++ +|+|+||||||||+++|.|. ..++.|+|.++
T Consensus 299 il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl--------~~p~~G~i~~~ 344 (520)
T TIGR03269 299 AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGV--------LEPTSGEVNVR 344 (520)
T ss_pred EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCeEEEEe
Confidence 68899999999986 99999999999999999998 77788999984
No 461
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.99 E-value=3.1e-10 Score=83.75 Aligned_cols=55 Identities=24% Similarity=0.291 Sum_probs=43.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|.|..... + ..++.|+|.++|.++.
T Consensus 97 ~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~--~-~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLI--E-GTSHEGEIYFLGTNTR 152 (329)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccc--C-CCCCceEEEECCEEcc
Confidence 68999999999985 999999999999999999872100 0 0145799999998764
No 462
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.99 E-value=2.7e-10 Score=88.80 Aligned_cols=46 Identities=28% Similarity=0.312 Sum_probs=41.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~ 63 (109)
++++++|++.+|++ +|+|+||||||||+++|+|. ..++.|+|.+++
T Consensus 20 il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~--------~~p~~G~i~~~~ 66 (552)
T TIGR03719 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV--------DKEFNGEARPAP 66 (552)
T ss_pred eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEecC
Confidence 78999999999985 99999999999999999998 777889988764
No 463
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.99 E-value=8.5e-11 Score=88.42 Aligned_cols=65 Identities=18% Similarity=0.330 Sum_probs=54.6
Q ss_pred HhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc
Q 033893 12 ASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK 87 (109)
Q Consensus 12 ~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~ 87 (109)
-.|++++++|++ -++|.|||||||+++.+.|. ..|+.|+|.+||..++ ....+++|.+....+..
T Consensus 340 gPiNl~ikrGelvFliG~NGsGKST~~~LLtGL--------~~PqsG~I~ldg~pV~---~e~ledYR~LfSavFsD 405 (546)
T COG4615 340 GPINLTIKRGELVFLIGGNGSGKSTLAMLLTGL--------YQPQSGEILLDGKPVS---AEQLEDYRKLFSAVFSD 405 (546)
T ss_pred cceeeEEecCcEEEEECCCCCcHHHHHHHHhcc--------cCCCCCceeECCccCC---CCCHHHHHHHHHHHhhh
Confidence 457888999996 89999999999999999999 8899999999998774 45677888876655543
No 464
>PLN03211 ABC transporter G-25; Provisional
Probab=98.99 E-value=3.7e-10 Score=89.86 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=43.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC--ceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP--TSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~--~~g~i~~~~~~i 66 (109)
+|+++++++++|++ +|+|+||||||||+++|+|. ..+ ..|+|.++|.++
T Consensus 83 iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~--------~~~~~~sG~I~inG~~~ 134 (659)
T PLN03211 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGR--------IQGNNFTGTILANNRKP 134 (659)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC--------CCCCceeEEEEECCEEC
Confidence 78999999999986 99999999999999999997 444 379999998764
No 465
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.99 E-value=3.2e-10 Score=88.15 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=46.7
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKA 68 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~ 68 (109)
.+++++++++++|+. +|+|+||||||||++.+.|. ..|..|+|.++|.++..
T Consensus 332 ~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--------~~~~~G~i~~~g~~i~~ 384 (544)
T TIGR01842 332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGI--------WPPTSGSVRLDGADLKQ 384 (544)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEehhh
Confidence 368999999999975 99999999999999999998 78889999999987763
No 466
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.98 E-value=4.9e-10 Score=88.84 Aligned_cols=52 Identities=37% Similarity=0.496 Sum_probs=44.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC-CEEEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG-KIKFKAF 69 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~-~~~i~~~ 69 (109)
+|++++|.+.+|++ +|+|+||||||||+++|+|. ..++.|+|.++ +..+.+.
T Consensus 327 il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~--------~~p~~G~i~~~~~~~igy~ 380 (638)
T PRK10636 327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE--------LAPVSGEIGLAKGIKLGYF 380 (638)
T ss_pred eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCCeEEECCCEEEEEe
Confidence 67899999999975 99999999999999999998 77888999886 4455544
No 467
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.98 E-value=2.4e-10 Score=88.91 Aligned_cols=52 Identities=19% Similarity=0.389 Sum_probs=46.8
Q ss_pred HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893 10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF 69 (109)
Q Consensus 10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~ 69 (109)
+|+++++.+++|+ ++|+|+||||||||++.|.|. ..++.|+|.++|.++..+
T Consensus 347 il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl--------~~~~~G~I~i~g~~i~~~ 399 (571)
T TIGR02203 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRF--------YEPDSGQILLDGHDLADY 399 (571)
T ss_pred cccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhc--------cCCCCCeEEECCEeHHhc
Confidence 6889999998887 599999999999999999999 888999999999887633
No 468
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.98 E-value=3.3e-10 Score=88.43 Aligned_cols=46 Identities=28% Similarity=0.538 Sum_probs=41.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~ 63 (109)
+|++++|++++|++ +|+|+||||||||+++|.|. ..++.|+|.+++
T Consensus 339 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~--------~~p~~G~i~~~~ 385 (556)
T PRK11819 339 LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ--------EQPDSGTIKIGE 385 (556)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCeEEEECC
Confidence 68899999999986 99999999999999999998 778889998864
No 469
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.98 E-value=3.4e-10 Score=90.25 Aligned_cols=53 Identities=25% Similarity=0.383 Sum_probs=47.8
Q ss_pred HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893 10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD 70 (109)
Q Consensus 10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d 70 (109)
+|+++++.+++|+ ++|+|+||||||||++.|.|. ..|+.|+|.++|.++..++
T Consensus 472 il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~--------~~p~~G~I~idg~~i~~~~ 525 (694)
T TIGR01846 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL--------YTPQHGQVLVDGVDLAIAD 525 (694)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCceEEECCEehhhCC
Confidence 6899999999887 599999999999999999999 8888999999999887443
No 470
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.98 E-value=2.1e-10 Score=88.07 Aligned_cols=48 Identities=25% Similarity=0.377 Sum_probs=41.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC-ceEEEEECCEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP-TSEELSIGKIK 65 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~-~~g~i~~~~~~ 65 (109)
+|++++|.+++|++ +|+|+||||||||+++|+|. ..+ +.|+|.++|..
T Consensus 275 il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~--------~~~~~~G~i~~~g~~ 324 (490)
T PRK10938 275 ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD--------HPQGYSNDLTLFGRR 324 (490)
T ss_pred EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCC--------CCcccCCeEEEeccc
Confidence 68899999999986 99999999999999999997 443 47899888754
No 471
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.98 E-value=5e-09 Score=67.85 Aligned_cols=76 Identities=22% Similarity=0.183 Sum_probs=55.5
Q ss_pred EEEeCCCCcHHHHHHHHhcCcc--cccCC--cccCceEEEEECCEEEEEEEcCCcccccc--------cHHhhhhcCCEE
Q 033893 24 LFLGLDNAGKTTLLHMLKDERL--VQHQP--TQHPTSEELSIGKIKFKAFDLGGHQIARR--------VWKDYYAKVIGS 91 (109)
Q Consensus 24 ~lvG~~GsGKSTll~~l~g~~~--~~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~~r~--------~~~~~~~~~~~~ 91 (109)
+++|.+|+|||||++.|.+.+. .+..| |.......+..++..+.++|.+|....+. .+..++++++++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 5899999999999999998752 22222 22234456677788999999999877443 344567889999
Q ss_pred EEEEeCCC
Q 033893 92 FKTKKIEF 99 (109)
Q Consensus 92 v~~~~~~~ 99 (109)
+.+.+...
T Consensus 81 i~v~d~~~ 88 (157)
T cd01894 81 LFVVDGRE 88 (157)
T ss_pred EEEEeccc
Confidence 99887643
No 472
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.97 E-value=7e-10 Score=78.80 Aligned_cols=51 Identities=25% Similarity=0.351 Sum_probs=40.2
Q ss_pred HHHhcCCccc-----ccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEE
Q 033893 10 ILASLGLWQK-----EAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKA 68 (109)
Q Consensus 10 ~l~~v~~~~~-----~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~ 68 (109)
.+.++++.+. ++++ +|+|+||||||||+++|+|. ..++.|+|.+++..+.+
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~--------~~p~~G~i~~~g~~i~~ 65 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGV--------LKPDEGDIEIELDTVSY 65 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCC--------CcCCCCeEEECCceEEE
Confidence 4455555554 5765 99999999999999999998 77888999998865543
No 473
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.97 E-value=3.5e-10 Score=88.19 Aligned_cols=46 Identities=28% Similarity=0.531 Sum_probs=41.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~ 63 (109)
+|+++++.+++|++ +|+|+||||||||+++|.|. ..++.|+|.+++
T Consensus 337 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~--------~~p~~G~i~~~~ 383 (552)
T TIGR03719 337 LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ--------EQPDSGTIKIGE 383 (552)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCC--------CCCCCeEEEECC
Confidence 68899999999986 99999999999999999998 778889998864
No 474
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3.4e-10 Score=87.37 Aligned_cols=54 Identities=22% Similarity=0.456 Sum_probs=48.9
Q ss_pred HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893 9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD 70 (109)
Q Consensus 9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d 70 (109)
.+|+++++++++|+ |+|+|++||||||+++.+.|. ..++.|+|..+|.++..++
T Consensus 352 ~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~--------~~~~~G~i~~~g~~~~~l~ 406 (573)
T COG4987 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA--------WDPQQGSITLNGVEIASLD 406 (573)
T ss_pred chhhccceeecCCCeEEEECCCCCCHHHHHHHHHhc--------cCCCCCeeeECCcChhhCC
Confidence 47899999998875 899999999999999999998 8899999999998887554
No 475
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.97 E-value=4.2e-09 Score=80.64 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=62.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc--cccCC--cccCceEEEEECCEEEEEEEcCCccccccc--------HHhhhhc
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL--VQHQP--TQHPTSEELSIGKIKFKAFDLGGHQIARRV--------WKDYYAK 87 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~--~~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~~r~~--------~~~~~~~ 87 (109)
..+|+++|.+|+|||||++.+.+.+. .+..| |..+....+.+++..+.+||++|.+..... ...++.+
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~ 294 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEE 294 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHh
Confidence 35789999999999999999998753 33333 333445678889999999999997653321 2347889
Q ss_pred CCEEEEEEeCCCccc
Q 033893 88 VIGSFKTKKIEFRDF 102 (109)
Q Consensus 88 ~~~~v~~~~~~~~~~ 102 (109)
+|.++.++|.+...+
T Consensus 295 aD~il~VvD~s~~~s 309 (449)
T PRK05291 295 ADLVLLVLDASEPLT 309 (449)
T ss_pred CCEEEEEecCCCCCC
Confidence 999999999865543
No 476
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4.6e-10 Score=87.11 Aligned_cols=51 Identities=31% Similarity=0.487 Sum_probs=46.6
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.++.++++++++++. +|+|+||||||||++.|.|. ..+..|+|.+||+++.
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~--------~~~~~G~I~vng~~l~ 386 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF--------LAPTQGEIRVNGIDLR 386 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCc--------CCCCCceEEECCcccc
Confidence 367899999999985 99999999999999999998 7888999999998877
No 477
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.95 E-value=4e-10 Score=87.92 Aligned_cols=54 Identities=24% Similarity=0.425 Sum_probs=47.9
Q ss_pred HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893 9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD 70 (109)
Q Consensus 9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d 70 (109)
.+|++++|.+++++ ++|+|++||||||+++.|.+. ..+..|+|.+||+++...+
T Consensus 343 ~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~--------~~~~~G~I~idg~dI~~i~ 397 (567)
T COG1132 343 PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL--------YDPTSGEILIDGIDIRDIS 397 (567)
T ss_pred ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhcc--------CCCCCCeEEECCEehhhcC
Confidence 36889999999987 599999999999999999998 7888999999999888443
No 478
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.95 E-value=4.1e-09 Score=71.67 Aligned_cols=85 Identities=20% Similarity=0.232 Sum_probs=69.5
Q ss_pred cccccEEEEEeCCCCcHHHHHHHHhcCcc----------cccC---CcccCceEEEEECC-EEEEEEEcCCcccccccHH
Q 033893 17 WQKEAKILFLGLDNAGKTTLLHMLKDERL----------VQHQ---PTQHPTSEELSIGK-IKFKAFDLGGHQIARRVWK 82 (109)
Q Consensus 17 ~~~~~~i~lvG~~GsGKSTll~~l~g~~~----------~~~~---pt~~~~~g~i~~~~-~~i~~~d~~g~~~~r~~~~ 82 (109)
...+.+|++.|+.++||||++++++.... .... .|+..+.|.+.+++ ..+.+++++||+|++.+|.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence 34567899999999999999999996642 0111 34567889988887 8999999999999999999
Q ss_pred hhhhcCCEEEEEEeCCCcc
Q 033893 83 DYYAKVIGSFKTKKIEFRD 101 (109)
Q Consensus 83 ~~~~~~~~~v~~~~~~~~~ 101 (109)
.+.+++.++++..+-+...
T Consensus 87 ~l~~ga~gaivlVDss~~~ 105 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPI 105 (187)
T ss_pred HHhCCcceEEEEEecCCCc
Confidence 9999999999988765544
No 479
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.95 E-value=4.7e-10 Score=88.03 Aligned_cols=50 Identities=26% Similarity=0.375 Sum_probs=45.7
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++++++++|+. +|+|+||||||||++.|.|. ..++.|+|.++|.++.
T Consensus 350 ~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--------~~~~~G~i~~~g~~~~ 400 (585)
T TIGR01192 350 GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV--------YDPTVGQILIDGIDIN 400 (585)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccC--------CCCCCCEEEECCEEhh
Confidence 68899999999885 99999999999999999998 7888999999998765
No 480
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.94 E-value=4.9e-10 Score=86.72 Aligned_cols=45 Identities=29% Similarity=0.504 Sum_probs=40.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcc--cCceEEEEEC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQ--HPTSEELSIG 62 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~--~~~~g~i~~~ 62 (109)
++++++|.+.+|++ +|+|+||||||||+++|+|. . .++.|+|.++
T Consensus 15 ~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl--------~~~~p~~G~i~~~ 62 (520)
T TIGR03269 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGM--------DQYEPTSGRIIYH 62 (520)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc--------ccCCCCceEEEEe
Confidence 68899999999986 99999999999999999997 5 4678998886
No 481
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.93 E-value=1.8e-08 Score=65.26 Aligned_cols=81 Identities=16% Similarity=0.112 Sum_probs=55.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcccccCC---ccc-CceEEEEECCEEEEEEEcCCcccccc--------cHHhhhhc
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQP---TQH-PTSEELSIGKIKFKAFDLGGHQIARR--------VWKDYYAK 87 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~~~~~p---t~~-~~~g~i~~~~~~i~~~d~~g~~~~r~--------~~~~~~~~ 87 (109)
..+|+++|++||||||+++.+.+.+.....+ +.. ...+....++..+.++|.+|...... ....++.+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999876432221 111 12223333457888999998654322 33456788
Q ss_pred CCEEEEEEeCCCc
Q 033893 88 VIGSFKTKKIEFR 100 (109)
Q Consensus 88 ~~~~v~~~~~~~~ 100 (109)
++.++.+.+.+..
T Consensus 83 ~d~i~~v~d~~~~ 95 (168)
T cd04163 83 VDLVLFVVDASEP 95 (168)
T ss_pred CCEEEEEEECCCc
Confidence 9999998887654
No 482
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.93 E-value=9.4e-09 Score=77.90 Aligned_cols=78 Identities=21% Similarity=0.131 Sum_probs=60.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc--cccCCcc--cCceEEEEECCEEEEEEEcCCccc--------ccccHHhhhhcCC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL--VQHQPTQ--HPTSEELSIGKIKFKAFDLGGHQI--------ARRVWKDYYAKVI 89 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~--~~~~pt~--~~~~g~i~~~~~~i~~~d~~g~~~--------~r~~~~~~~~~~~ 89 (109)
+|+|+|.+|+|||||++.|.+.+. ....|.. ....+.+.+++..+.+||++|... .+.....++.++|
T Consensus 3 ~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad 82 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEAD 82 (435)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCC
Confidence 689999999999999999998763 2333322 344577888899999999999876 3344566788999
Q ss_pred EEEEEEeCCC
Q 033893 90 GSFKTKKIEF 99 (109)
Q Consensus 90 ~~v~~~~~~~ 99 (109)
+++.+.+.+.
T Consensus 83 ~il~vvd~~~ 92 (435)
T PRK00093 83 VILFVVDGRA 92 (435)
T ss_pred EEEEEEECCC
Confidence 9999998754
No 483
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.93 E-value=3.6e-10 Score=86.84 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=50.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEc
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDL 71 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~ 71 (109)
++++++|..++|+. +|+||||||||||.|.+.|. ..|..|.|.+|+-++..||.
T Consensus 351 il~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~--------w~p~~G~VRLDga~l~qWd~ 405 (580)
T COG4618 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGI--------WPPTSGSVRLDGADLRQWDR 405 (580)
T ss_pred ceecceeEecCCceEEEECCCCccHHHHHHHHHcc--------cccCCCcEEecchhhhcCCH
Confidence 57899999999996 99999999999999999998 88889999999999999984
No 484
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.93 E-value=1.4e-08 Score=67.94 Aligned_cols=78 Identities=23% Similarity=0.249 Sum_probs=57.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCccc-c--cCCcccCceEEEEECCEEEEEEEcCCcc------cccccHHhhhh--cCCE
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLV-Q--HQPTQHPTSEELSIGKIKFKAFDLGGHQ------IARRVWKDYYA--KVIG 90 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~-~--~~pt~~~~~g~i~~~~~~i~~~d~~g~~------~~r~~~~~~~~--~~~~ 90 (109)
+|+++|.+++|||||+++|+|.+.. . ...|.....|.+.+++..+.+.|++|.- ....++..|.. .+|.
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ 81 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDL 81 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCE
Confidence 6899999999999999999998742 2 2335556778999999999999998832 23446667764 7889
Q ss_pred EEEEEeCCC
Q 033893 91 SFKTKKIEF 99 (109)
Q Consensus 91 ~v~~~~~~~ 99 (109)
++.+.|-+.
T Consensus 82 ii~VvDa~~ 90 (156)
T PF02421_consen 82 IIVVVDATN 90 (156)
T ss_dssp EEEEEEGGG
T ss_pred EEEECCCCC
Confidence 998888654
No 485
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.93 E-value=5.9e-10 Score=88.27 Aligned_cols=53 Identities=21% Similarity=0.412 Sum_probs=44.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC-EEEEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK-IKFKAFD 70 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~-~~i~~~d 70 (109)
++++++|.+.+|++ +|+|+||||||||+++|.|. ..|+.|+|.++. ..+.+.+
T Consensus 334 il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~--------~~p~~G~i~~~~~~~i~y~~ 388 (635)
T PRK11147 334 LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ--------LQADSGRIHCGTKLEVAYFD 388 (635)
T ss_pred EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCCcEEEECCCcEEEEEe
Confidence 67899999999975 99999999999999999998 778889998853 3444443
No 486
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=4.4e-10 Score=86.86 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=46.2
Q ss_pred HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEE
Q 033893 9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFD 70 (109)
Q Consensus 9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d 70 (109)
++|+.++|+++.|+ |+|+|.|||||||++|.|.+. .. ..|+|.++|++++-.+
T Consensus 366 ~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF--------~d-~sG~I~IdG~dik~~~ 419 (591)
T KOG0057|consen 366 KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRF--------FD-YSGSILIDGQDIKEVS 419 (591)
T ss_pred ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHH--------hc-cCCcEEECCeeHhhhC
Confidence 37899999998886 899999999999999999986 55 6899999999887444
No 487
>PLN03140 ABC transporter G family member; Provisional
Probab=98.90 E-value=1.4e-09 Score=92.62 Aligned_cols=51 Identities=31% Similarity=0.448 Sum_probs=44.7
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCc---eEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT---SEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~---~g~i~~~~~~i~ 67 (109)
.+|+++++.+++|++ +|+|+|||||||||++|+|. ..++ .|+|.++|.++.
T Consensus 179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~--------l~~~~~~~G~I~~nG~~~~ 233 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGK--------LDPSLKVSGEITYNGYRLN 233 (1470)
T ss_pred eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCC--------CCCCCcceeEEEECCEech
Confidence 378999999999997 99999999999999999998 5454 799999987654
No 488
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.90 E-value=8e-10 Score=96.29 Aligned_cols=50 Identities=24% Similarity=0.322 Sum_probs=46.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+++++++.+++|++ +|+|+|||||||++++|+|. ..++.|+|.++|.++.
T Consensus 1954 aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gl--------l~ptsG~I~i~G~~i~ 2004 (2272)
T TIGR01257 1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGD--------TTVTSGDATVAGKSIL 2004 (2272)
T ss_pred EEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCC--------CCCCccEEEECCEECc
Confidence 78899999999997 99999999999999999999 8888999999998763
No 489
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.90 E-value=1.6e-08 Score=68.34 Aligned_cols=80 Identities=21% Similarity=0.279 Sum_probs=49.8
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCc-ccccCCcccCceEEEEEC-CEEEEEEEcCCc----------ccccccHHhhhh
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDER-LVQHQPTQHPTSEELSIG-KIKFKAFDLGGH----------QIARRVWKDYYA 86 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~-~~~~~pt~~~~~g~i~~~-~~~i~~~d~~g~----------~~~r~~~~~~~~ 86 (109)
..-+|+++|.+|||||||++.+.+.+ .....|+.+.......+. +..+.+||++|. ++++.+...|+.
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 102 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLR 102 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHH
Confidence 33568999999999999999999875 344444433221111111 367889999994 334445566666
Q ss_pred cC---CEEEEEEeCC
Q 033893 87 KV---IGSFKTKKIE 98 (109)
Q Consensus 87 ~~---~~~v~~~~~~ 98 (109)
.+ +.++.+.+.+
T Consensus 103 ~~~~~~~~~~v~d~~ 117 (196)
T PRK00454 103 TRENLKGVVLLIDSR 117 (196)
T ss_pred hCccceEEEEEEecC
Confidence 55 3455555543
No 490
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.90 E-value=5.4e-09 Score=75.77 Aligned_cols=77 Identities=16% Similarity=0.202 Sum_probs=52.8
Q ss_pred hcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEE
Q 033893 13 SLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGS 91 (109)
Q Consensus 13 ~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~ 91 (109)
+++|..+...| +|.|+|||||||++|+|+|. ..|+.|.|.++|..+. |....-. + +-+ +-..-
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL--------~rPdeG~I~lngr~L~--Ds~k~i~---l-p~~--~RriG 79 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGL--------TRPDEGRIELNGRVLV--DAEKGIF---L-PPE--KRRIG 79 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhcc--------CCccccEEEECCEEee--cccCCcc---c-Chh--hheee
Confidence 45666666444 99999999999999999999 8999999999998766 5321100 0 111 11234
Q ss_pred EEEEeCCCcccccc
Q 033893 92 FKTKKIEFRDFYEV 105 (109)
Q Consensus 92 v~~~~~~~~~~~~~ 105 (109)
.+++|-.+|+++++
T Consensus 80 YVFQDARLFpH~tV 93 (352)
T COG4148 80 YVFQDARLFPHYTV 93 (352)
T ss_pred eEeeccccccceEE
Confidence 45556666776665
No 491
>PLN03232 ABC transporter C family member; Provisional
Probab=98.89 E-value=1.1e-09 Score=93.49 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=47.6
Q ss_pred HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEE
Q 033893 9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKA 68 (109)
Q Consensus 9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~ 68 (109)
.+|+++++++++|+ ++|+|++|||||||++.|.+. ..++.|+|.+||+++.-
T Consensus 1250 ~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl--------~~p~~G~I~IdG~di~~ 1302 (1495)
T PLN03232 1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRI--------VELEKGRIMIDDCDVAK 1302 (1495)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CcCCCceEEECCEEhhh
Confidence 47999999999987 699999999999999999998 88889999999998873
No 492
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.89 E-value=1.2e-09 Score=86.72 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=45.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|+++++++ +|+|+||||||||+++|.|. ..++.|++.++|.++.
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl--------~~~~~G~i~~~g~~i~ 73 (648)
T PRK10535 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCL--------DKPTSGTYRVAGQDVA 73 (648)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCeEEEECCEEcC
Confidence 68899999999986 99999999999999999999 7788999999998665
No 493
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.88 E-value=1.8e-09 Score=85.38 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=43.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccC---ceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHP---TSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~---~~g~i~~~~~~i~ 67 (109)
+|+++++.+++|++ +|+|+||||||||+++|+|. ..+ ..|+|.++|.++.
T Consensus 40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~--------~~~~~~~~G~i~~~g~~~~ 93 (617)
T TIGR00955 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFR--------SPKGVKGSGSVLLNGMPID 93 (617)
T ss_pred cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCC--------CCCCCcceeEEEECCEECC
Confidence 78999999999996 99999999999999999997 333 3689999997653
No 494
>PLN03073 ABC transporter F family; Provisional
Probab=98.88 E-value=9.9e-10 Score=88.19 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=41.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~ 63 (109)
++++++|.++++++ +|+|+||||||||+++|.|. ..|+.|+|.+++
T Consensus 524 il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl--------l~p~~G~I~~~~ 570 (718)
T PLN03073 524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGE--------LQPSSGTVFRSA 570 (718)
T ss_pred eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCCceEEECC
Confidence 68899999999975 99999999999999999998 778889998765
No 495
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.88 E-value=1.7e-08 Score=67.92 Aligned_cols=81 Identities=23% Similarity=0.387 Sum_probs=51.9
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcCc-ccccCCcccCce--EEEEECCEEEEEEEcCCccc----------ccccHHhh
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDER-LVQHQPTQHPTS--EELSIGKIKFKAFDLGGHQI----------ARRVWKDY 84 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~~-~~~~~pt~~~~~--g~i~~~~~~i~~~d~~g~~~----------~r~~~~~~ 84 (109)
.+..+|+|+|++|+|||||++.+.+.. .....++.+.+. .....+ ..+.+||++|... +..+...|
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 345678999999999999999999875 334444443222 122223 3678999999432 22233456
Q ss_pred hhc---CCEEEEEEeCCC
Q 033893 85 YAK---VIGSFKTKKIEF 99 (109)
Q Consensus 85 ~~~---~~~~v~~~~~~~ 99 (109)
++. +++++.+.+.+.
T Consensus 95 l~~~~~~~~ii~vvd~~~ 112 (179)
T TIGR03598 95 LEKRENLKGVVLLMDIRH 112 (179)
T ss_pred HHhChhhcEEEEEecCCC
Confidence 654 467888877654
No 496
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.88 E-value=2.2e-09 Score=83.63 Aligned_cols=54 Identities=33% Similarity=0.573 Sum_probs=45.8
Q ss_pred HHHhcCCccccc-EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC-EEEEEEEc
Q 033893 10 ILASLGLWQKEA-KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK-IKFKAFDL 71 (109)
Q Consensus 10 ~l~~v~~~~~~~-~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~-~~i~~~d~ 71 (109)
++++++|.++++ +|+|+|+||+|||||++.|.|. .++..|+|.++. ..+.++|-
T Consensus 337 l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~--------~~~~~G~v~~g~~v~igyf~Q 392 (530)
T COG0488 337 LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGE--------LGPLSGTVKVGETVKIGYFDQ 392 (530)
T ss_pred eecCceEEecCCCEEEEECCCCCCHHHHHHHHhhh--------cccCCceEEeCCceEEEEEEe
Confidence 567889998766 5899999999999999999998 777789998864 77777764
No 497
>PLN03130 ABC transporter C family member; Provisional
Probab=98.88 E-value=1.4e-09 Score=93.42 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=47.3
Q ss_pred HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+|++++|++++|+ |+|+|++|||||||++.|.+. ..+..|+|.+||+++.
T Consensus 1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl--------~~p~~G~I~IDG~dI~ 1304 (1622)
T PLN03130 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRI--------VELERGRILIDGCDIS 1304 (1622)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCc--------CCCCCceEEECCEecc
Confidence 47899999999986 699999999999999999998 8888999999999887
No 498
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.88 E-value=1.4e-09 Score=77.08 Aligned_cols=51 Identities=31% Similarity=0.470 Sum_probs=41.3
Q ss_pred HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+|.++++.+++++ .+|+|+||||||||++.+++. ..+..|.+.+-|..+.
T Consensus 45 ~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~--------~~pssg~~~~~G~~~G 96 (257)
T COG1119 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE--------HPPSSGDVTLLGRRFG 96 (257)
T ss_pred eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcc--------cCCCCCceeeeeeecc
Confidence 36889999999987 599999999999999999998 5566666666555443
No 499
>PTZ00243 ABC transporter; Provisional
Probab=98.87 E-value=1.2e-09 Score=93.55 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=48.1
Q ss_pred HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEE
Q 033893 9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAF 69 (109)
Q Consensus 9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~ 69 (109)
.+|++++|++++|+ |+|+|++|||||||++.|.+. ..++.|+|.++|+++.-+
T Consensus 1324 ~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl--------~~p~~G~I~IDG~di~~i 1377 (1560)
T PTZ00243 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRM--------VEVCGGEIRVNGREIGAY 1377 (1560)
T ss_pred ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEEcccC
Confidence 37899999998886 699999999999999999999 888899999999988744
No 500
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.87 E-value=1.3e-08 Score=67.59 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=49.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHH----hhhhcCCEEEEEEeC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWK----DYYAKVIGSFKTKKI 97 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~----~~~~~~~~~v~~~~~ 97 (109)
+|+++|.+|+|||||+++|.+... .....+.+.+++. ..||++|....+..|. ..++++|+++.+++.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~------~~~~~~~v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT------LARKTQAVEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc------cCccceEEEECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 689999999999999999997631 1123355555543 2589999733222221 236799999999988
Q ss_pred CCcc
Q 033893 98 EFRD 101 (109)
Q Consensus 98 ~~~~ 101 (109)
+...
T Consensus 75 ~~~~ 78 (158)
T PRK15467 75 NDPE 78 (158)
T ss_pred CCcc
Confidence 6543
Done!