Query 033893
Match_columns 109
No_of_seqs 111 out of 2272
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 12:25:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033893.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033893hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f6b_A SAR1; gtpases, N-termin 99.8 6.3E-21 2.2E-25 128.9 8.5 99 7-105 12-110 (198)
2 1m2o_B GTP-binding protein SAR 99.8 1.9E-20 6.4E-25 125.7 9.3 103 3-105 6-108 (190)
3 1zj6_A ADP-ribosylation factor 99.7 7.4E-18 2.5E-22 112.1 9.6 90 16-105 12-101 (187)
4 1ksh_A ARF-like protein 2; sma 99.7 1.9E-17 6.5E-22 109.7 8.2 95 10-105 8-103 (186)
5 1fzq_A ADP-ribosylation factor 99.7 3E-17 1E-21 109.1 8.7 88 18-105 14-101 (181)
6 1moz_A ARL1, ADP-ribosylation 99.7 2.2E-17 7.5E-22 108.8 7.4 97 7-104 5-102 (183)
7 2x77_A ADP-ribosylation factor 99.7 1.2E-17 4.2E-22 111.0 5.8 87 18-104 20-106 (189)
8 2b6h_A ADP-ribosylation factor 99.7 5.1E-17 1.7E-21 109.0 8.2 94 11-105 21-114 (192)
9 1r8s_A ADP-ribosylation factor 99.7 5.2E-17 1.8E-21 105.2 7.7 84 22-105 2-85 (164)
10 4dkx_A RAS-related protein RAB 99.7 5.2E-17 1.8E-21 112.0 7.9 92 18-109 11-107 (216)
11 1upt_A ARL1, ADP-ribosylation 99.7 1.1E-16 3.7E-21 104.2 8.9 87 19-105 6-92 (171)
12 2h17_A ADP-ribosylation factor 99.7 1.3E-16 4.4E-21 105.6 8.0 88 18-105 19-106 (181)
13 4bas_A ADP-ribosylation factor 99.7 3.1E-16 1.1E-20 104.5 8.6 88 19-106 16-105 (199)
14 1zd9_A ADP-ribosylation factor 99.6 6.6E-16 2.3E-20 102.9 8.7 88 18-105 20-108 (188)
15 2h57_A ADP-ribosylation factor 99.6 4.2E-16 1.4E-20 103.7 7.1 88 18-105 19-108 (190)
16 2hxs_A RAB-26, RAS-related pro 99.6 6.3E-16 2.1E-20 101.2 6.6 88 19-106 5-98 (178)
17 2f9l_A RAB11B, member RAS onco 99.6 1.8E-15 6.2E-20 101.6 8.1 85 20-104 5-94 (199)
18 1oix_A RAS-related protein RAB 99.6 2E-15 6.8E-20 101.2 8.2 84 21-104 30-118 (191)
19 1ek0_A Protein (GTP-binding pr 99.6 8.9E-15 3E-19 94.6 8.9 87 19-105 2-93 (170)
20 2hup_A RAS-related protein RAB 99.6 4.8E-15 1.6E-19 100.0 7.7 86 21-106 30-120 (201)
21 3reg_A RHO-like small GTPase; 99.6 7.8E-15 2.7E-19 97.8 8.3 88 18-105 21-112 (194)
22 3lvq_E ARF-GAP with SH3 domain 99.6 6.3E-15 2.1E-19 111.5 8.3 87 19-105 321-407 (497)
23 3tkl_A RAS-related protein RAB 99.6 1.4E-14 4.6E-19 96.3 8.9 87 20-106 16-107 (196)
24 3tw8_B RAS-related protein RAB 99.6 8.7E-15 3E-19 95.7 7.6 87 19-105 8-99 (181)
25 2ew1_A RAS-related protein RAB 99.6 1.2E-14 4.2E-19 98.4 8.2 87 20-106 26-117 (201)
26 2bme_A RAB4A, RAS-related prot 99.6 1.2E-14 4E-19 95.9 7.8 86 20-105 10-100 (186)
27 2y8e_A RAB-protein 6, GH09086P 99.6 2.1E-14 7.3E-19 93.7 8.9 87 19-105 13-104 (179)
28 1wms_A RAB-9, RAB9, RAS-relate 99.6 1.6E-14 5.6E-19 94.3 8.1 87 19-105 6-97 (177)
29 3q3j_B RHO-related GTP-binding 99.5 1E-14 3.5E-19 99.4 7.2 87 19-105 26-116 (214)
30 2g6b_A RAS-related protein RAB 99.5 2E-14 6.7E-19 94.2 8.3 90 16-105 6-101 (180)
31 3t5g_A GTP-binding protein RHE 99.5 1.5E-14 5.2E-19 95.1 7.8 87 19-105 5-95 (181)
32 1z06_A RAS-related protein RAB 99.5 2.1E-14 7.1E-19 95.4 8.5 87 19-105 19-111 (189)
33 1r2q_A RAS-related protein RAB 99.5 1.9E-14 6.4E-19 93.1 8.0 87 19-105 5-96 (170)
34 3bc1_A RAS-related protein RAB 99.5 1.5E-14 5.1E-19 95.4 7.6 86 20-105 11-111 (195)
35 1c1y_A RAS-related protein RAP 99.5 1.9E-14 6.5E-19 93.0 7.9 86 20-105 3-92 (167)
36 1z2a_A RAS-related protein RAB 99.5 2E-14 6.7E-19 93.0 7.8 87 19-105 4-95 (168)
37 1z08_A RAS-related protein RAB 99.5 1.2E-14 4.1E-19 94.3 6.8 87 19-105 5-96 (170)
38 2il1_A RAB12; G-protein, GDP, 99.5 1.6E-14 5.5E-19 96.5 7.6 86 21-106 27-117 (192)
39 1x3s_A RAS-related protein RAB 99.5 2.9E-14 9.9E-19 94.4 8.8 87 19-105 14-105 (195)
40 2atx_A Small GTP binding prote 99.5 2E-14 6.9E-19 95.7 8.0 87 20-106 18-108 (194)
41 1m7b_A RND3/RHOE small GTP-bin 99.5 2.3E-14 7.7E-19 95.0 8.1 87 19-105 6-96 (184)
42 3q72_A GTP-binding protein RAD 99.5 1.5E-14 5.2E-19 93.6 7.1 86 20-105 2-90 (166)
43 2zej_A Dardarin, leucine-rich 99.5 5.5E-15 1.9E-19 98.2 5.0 86 20-105 2-98 (184)
44 2fn4_A P23, RAS-related protei 99.5 3.6E-14 1.2E-18 92.7 8.9 87 19-105 8-98 (181)
45 2efe_B Small GTP-binding prote 99.5 3.5E-14 1.2E-18 93.0 8.8 87 19-105 11-102 (181)
46 3clv_A RAB5 protein, putative; 99.5 2.8E-14 9.4E-19 94.5 8.4 87 19-105 6-134 (208)
47 2fg5_A RAB-22B, RAS-related pr 99.5 3.2E-14 1.1E-18 94.9 8.6 87 19-105 22-113 (192)
48 2j0v_A RAC-like GTP-binding pr 99.5 2.4E-14 8.3E-19 96.6 8.1 88 19-106 8-99 (212)
49 1kao_A RAP2A; GTP-binding prot 99.5 3.2E-14 1.1E-18 91.6 8.3 85 20-104 3-91 (167)
50 2a5j_A RAS-related protein RAB 99.5 1.9E-14 6.4E-19 95.9 7.5 86 20-105 21-111 (191)
51 2bcg_Y Protein YP2, GTP-bindin 99.5 2.1E-14 7.1E-19 96.5 7.7 86 20-105 8-98 (206)
52 1u8z_A RAS-related protein RAL 99.5 3E-14 1E-18 91.8 8.2 87 19-105 3-93 (168)
53 3o47_A ADP-ribosylation factor 99.5 9.4E-15 3.2E-19 106.1 6.4 85 21-105 166-250 (329)
54 3cph_A RAS-related protein SEC 99.5 3E-14 1E-18 95.8 8.4 86 20-105 20-110 (213)
55 2fu5_C RAS-related protein RAB 99.5 2.4E-15 8.3E-20 99.1 2.8 86 20-105 8-98 (183)
56 3kkq_A RAS-related protein M-R 99.5 5.4E-14 1.9E-18 92.5 9.4 88 19-106 17-108 (183)
57 1z0j_A RAB-22, RAS-related pro 99.5 3.9E-14 1.3E-18 91.7 8.5 87 19-105 5-96 (170)
58 1gwn_A RHO-related GTP-binding 99.5 2.9E-14 9.8E-19 96.7 8.0 88 19-106 27-118 (205)
59 4dsu_A GTPase KRAS, isoform 2B 99.5 4.1E-14 1.4E-18 93.1 8.5 87 19-105 3-93 (189)
60 2q3h_A RAS homolog gene family 99.5 3.6E-14 1.2E-18 94.9 8.3 88 19-106 19-110 (201)
61 2oil_A CATX-8, RAS-related pro 99.5 2.8E-14 9.5E-19 94.9 7.7 85 21-105 26-115 (193)
62 1g16_A RAS-related protein SEC 99.5 1.7E-14 5.9E-19 93.4 6.5 86 20-105 3-93 (170)
63 2o52_A RAS-related protein RAB 99.5 1.6E-14 5.4E-19 97.2 6.5 86 20-105 25-115 (200)
64 2erx_A GTP-binding protein DI- 99.5 5.1E-14 1.7E-18 91.2 8.7 86 20-105 3-92 (172)
65 2p5s_A RAS and EF-hand domain 99.5 3.4E-14 1.2E-18 95.3 8.0 87 19-105 27-118 (199)
66 1z0f_A RAB14, member RAS oncog 99.5 6.9E-14 2.4E-18 91.2 9.3 86 20-105 15-105 (179)
67 2gf9_A RAS-related protein RAB 99.5 4.5E-14 1.5E-18 93.8 8.5 86 21-106 23-113 (189)
68 1zbd_A Rabphilin-3A; G protein 99.5 4.5E-14 1.5E-18 94.6 8.5 86 20-105 8-98 (203)
69 2gco_A H9, RHO-related GTP-bin 99.5 5.2E-14 1.8E-18 94.6 8.8 87 19-105 24-114 (201)
70 2nzj_A GTP-binding protein REM 99.5 3.6E-14 1.2E-18 92.4 7.7 87 19-105 3-95 (175)
71 4gzl_A RAS-related C3 botulinu 99.5 2.8E-14 9.7E-19 96.3 7.4 93 14-106 24-120 (204)
72 1ky3_A GTP-binding protein YPT 99.5 1.7E-14 5.7E-19 94.4 6.0 87 19-105 7-99 (182)
73 3ihw_A Centg3; RAS, centaurin, 99.5 4E-14 1.4E-18 94.3 7.9 83 18-105 18-103 (184)
74 2iwr_A Centaurin gamma 1; ANK 99.5 4E-14 1.4E-18 92.8 7.6 85 18-107 5-92 (178)
75 2bov_A RAla, RAS-related prote 99.5 5.6E-14 1.9E-18 93.9 8.5 87 19-105 13-103 (206)
76 3cpj_B GTP-binding protein YPT 99.5 2.1E-14 7.2E-19 98.0 6.5 86 20-105 13-103 (223)
77 2fh5_B SR-beta, signal recogni 99.5 6.9E-14 2.4E-18 94.5 8.9 82 19-100 6-91 (214)
78 1mh1_A RAC1; GTP-binding, GTPa 99.5 7E-14 2.4E-18 91.8 8.6 87 19-105 4-94 (186)
79 1vg8_A RAS-related protein RAB 99.5 4E-14 1.4E-18 94.8 7.5 87 19-105 7-98 (207)
80 2a9k_A RAS-related protein RAL 99.5 7.4E-14 2.5E-18 91.6 8.3 87 19-105 17-107 (187)
81 3c5c_A RAS-like protein 12; GD 99.5 9.2E-14 3.2E-18 92.5 8.4 89 18-107 19-111 (187)
82 3dz8_A RAS-related protein RAB 99.5 1.4E-14 4.9E-19 96.4 4.4 86 21-106 24-114 (191)
83 2fv8_A H6, RHO-related GTP-bin 99.5 7.7E-14 2.6E-18 94.1 8.1 87 19-105 24-114 (207)
84 2atv_A RERG, RAS-like estrogen 99.5 1.2E-13 4E-18 92.3 8.8 87 18-105 26-116 (196)
85 3cbq_A GTP-binding protein REM 99.5 5.6E-14 1.9E-18 94.5 7.2 87 21-107 24-116 (195)
86 2yc2_C IFT27, small RAB-relate 99.5 6E-15 2.1E-19 98.7 2.4 88 19-106 19-115 (208)
87 2gf0_A GTP-binding protein DI- 99.5 1.2E-13 4.1E-18 91.8 8.5 87 19-105 7-97 (199)
88 3r7w_B Gtpase2, GTP-binding pr 99.5 2.1E-14 7.2E-19 104.8 5.2 78 22-100 1-85 (331)
89 2ce2_X GTPase HRAS; signaling 99.5 1.4E-13 4.7E-18 88.3 8.6 85 20-104 3-91 (166)
90 3oes_A GTPase rhebl1; small GT 99.5 4E-14 1.4E-18 95.0 6.1 87 19-105 23-113 (201)
91 2j1l_A RHO-related GTP-binding 99.5 6.2E-14 2.1E-18 95.3 7.1 88 19-106 33-124 (214)
92 3r7w_A Gtpase1, GTP-binding pr 99.5 1.1E-13 3.8E-18 99.5 8.6 86 20-105 3-98 (307)
93 3q85_A GTP-binding protein REM 99.5 7.5E-14 2.6E-18 90.5 7.0 87 21-107 3-95 (169)
94 2wji_A Ferrous iron transport 99.5 4.9E-13 1.7E-17 87.3 10.8 82 20-101 3-95 (165)
95 3t1o_A Gliding protein MGLA; G 99.5 1.3E-14 4.5E-19 96.0 3.3 80 19-98 13-108 (198)
96 2lkc_A Translation initiation 99.5 1.5E-13 5E-18 89.8 8.3 83 17-99 5-90 (178)
97 2f7s_A C25KG, RAS-related prot 99.5 3E-14 1E-18 96.5 4.6 86 20-105 25-125 (217)
98 3bwd_D RAC-like GTP-binding pr 99.5 3E-14 1E-18 93.4 4.3 89 18-106 6-98 (182)
99 3con_A GTPase NRAS; structural 99.5 1.8E-13 6.1E-18 90.6 7.4 87 19-105 20-110 (190)
100 2gj8_A MNME, tRNA modification 99.5 8.9E-13 3.1E-17 86.8 10.8 85 20-104 4-100 (172)
101 3gj0_A GTP-binding nuclear pro 99.4 6.7E-14 2.3E-18 95.2 5.1 88 19-106 14-106 (221)
102 4djt_A GTP-binding nuclear pro 99.4 8.5E-14 2.9E-18 94.3 5.1 88 19-106 10-103 (218)
103 2cjw_A GTP-binding protein GEM 99.4 3.4E-13 1.2E-17 90.4 7.7 90 18-107 4-100 (192)
104 2wjg_A FEOB, ferrous iron tran 99.4 2E-12 6.7E-17 85.3 9.9 81 19-99 6-97 (188)
105 3llu_A RAS-related GTP-binding 99.4 3E-13 1E-17 90.5 5.9 82 19-100 19-108 (196)
106 3tif_A Uncharacterized ABC tra 99.4 8.6E-14 2.9E-18 97.0 3.0 50 10-67 20-70 (235)
107 3l0i_B RAS-related protein RAB 99.4 1.4E-14 4.7E-19 97.2 -1.4 86 20-105 33-123 (199)
108 2pcj_A ABC transporter, lipopr 99.4 1.1E-13 3.8E-18 95.8 3.0 50 10-67 19-69 (224)
109 1g6h_A High-affinity branched- 99.4 1.6E-13 5.4E-18 96.7 3.6 49 10-66 22-71 (257)
110 2g3y_A GTP-binding protein GEM 99.4 8.3E-13 2.8E-17 90.5 7.0 88 20-107 37-131 (211)
111 3th5_A RAS-related C3 botulinu 99.1 3.7E-14 1.3E-18 95.3 0.0 91 16-106 26-120 (204)
112 3gfo_A Cobalt import ATP-bindi 99.4 1.3E-13 4.6E-18 98.2 2.7 49 10-66 23-72 (275)
113 1b0u_A Histidine permease; ABC 99.4 1.8E-13 6.3E-18 96.8 3.0 50 10-67 21-71 (262)
114 1ji0_A ABC transporter; ATP bi 99.4 2.2E-13 7.7E-18 95.1 2.8 49 10-66 21-70 (240)
115 2olj_A Amino acid ABC transpor 99.4 2.2E-13 7.5E-18 96.6 2.8 49 10-66 39-88 (263)
116 4g1u_C Hemin import ATP-bindin 99.4 1.6E-13 5.4E-18 97.4 1.9 50 10-67 26-76 (266)
117 2wkq_A NPH1-1, RAS-related C3 99.4 3E-12 1E-16 91.3 8.6 87 19-105 154-244 (332)
118 2ged_A SR-beta, signal recogni 99.4 1.9E-13 6.6E-18 90.7 2.1 84 19-103 47-135 (193)
119 3fvq_A Fe(3+) IONS import ATP- 99.3 3.9E-13 1.3E-17 99.1 3.8 50 10-67 19-69 (359)
120 1nrj_B SR-beta, signal recogni 99.3 3.4E-13 1.2E-17 91.3 3.3 85 19-104 11-100 (218)
121 2ff7_A Alpha-hemolysin translo 99.3 3.1E-13 1.1E-17 94.9 2.4 49 10-66 24-73 (247)
122 3tui_C Methionine import ATP-b 99.3 4.2E-13 1.5E-17 99.1 3.2 50 10-67 43-93 (366)
123 1vpl_A ABC transporter, ATP-bi 99.3 4.9E-13 1.7E-17 94.4 3.4 49 10-66 30-79 (256)
124 1sgw_A Putative ABC transporte 99.3 4.2E-13 1.4E-17 92.5 2.7 49 10-66 24-73 (214)
125 2yz2_A Putative ABC transporte 99.3 4.8E-13 1.6E-17 94.7 3.0 49 10-66 22-71 (266)
126 2ixe_A Antigen peptide transpo 99.3 4.3E-13 1.5E-17 95.3 2.7 49 10-66 34-83 (271)
127 1mv5_A LMRA, multidrug resista 99.3 3.8E-13 1.3E-17 94.1 2.2 50 10-67 17-67 (243)
128 2dyk_A GTP-binding protein; GT 99.3 1.4E-11 4.6E-16 79.0 9.3 79 22-100 3-92 (161)
129 3rlf_A Maltose/maltodextrin im 99.3 5.9E-13 2E-17 98.8 3.2 50 10-67 18-68 (381)
130 2ihy_A ABC transporter, ATP-bi 99.3 3.7E-13 1.3E-17 96.1 1.8 49 10-66 36-85 (279)
131 1g29_1 MALK, maltose transport 99.3 1.1E-12 3.6E-17 97.1 3.8 50 10-67 18-68 (372)
132 2onk_A Molybdate/tungstate ABC 99.3 1E-12 3.6E-17 91.9 3.4 48 10-66 14-62 (240)
133 2cxx_A Probable GTP-binding pr 99.3 1.5E-12 5.2E-17 85.7 4.0 75 22-98 3-90 (190)
134 2pze_A Cystic fibrosis transme 99.3 8.7E-13 3E-17 91.5 2.9 46 10-63 23-69 (229)
135 1z47_A CYSA, putative ABC-tran 99.3 8.7E-13 3E-17 97.1 3.1 50 10-67 30-80 (355)
136 2yyz_A Sugar ABC transporter, 99.3 9E-13 3.1E-17 97.1 3.1 50 10-67 18-68 (359)
137 2qi9_C Vitamin B12 import ATP- 99.3 7.8E-13 2.7E-17 93.0 2.6 49 9-66 14-63 (249)
138 1oxx_K GLCV, glucose, ABC tran 99.3 7E-13 2.4E-17 97.5 2.4 50 10-67 20-70 (353)
139 2it1_A 362AA long hypothetical 99.3 1.1E-12 3.7E-17 96.8 3.2 50 10-67 18-68 (362)
140 2cbz_A Multidrug resistance-as 99.3 8.7E-13 3E-17 92.0 2.5 46 10-63 20-66 (237)
141 3lxx_A GTPase IMAP family memb 99.3 2.5E-11 8.5E-16 83.7 9.8 80 20-99 29-124 (239)
142 1v43_A Sugar-binding transport 99.3 1.3E-12 4.4E-17 96.7 3.2 50 10-67 26-76 (372)
143 3d31_A Sulfate/molybdate ABC t 99.3 9.8E-13 3.3E-17 96.6 2.3 50 10-67 15-65 (348)
144 3nh6_A ATP-binding cassette SU 99.3 1E-12 3.5E-17 95.0 1.6 50 10-67 69-119 (306)
145 3k53_A Ferrous iron transport 99.2 4.8E-11 1.6E-15 84.0 9.8 80 21-100 4-94 (271)
146 2zu0_C Probable ATP-dependent 99.2 1.8E-12 6.2E-17 91.8 2.3 51 10-66 35-86 (267)
147 3iby_A Ferrous iron transport 99.2 4.8E-11 1.6E-15 83.9 9.5 79 22-100 3-96 (256)
148 3iev_A GTP-binding protein ERA 99.2 4.3E-11 1.5E-15 86.0 9.5 85 17-101 7-106 (308)
149 3def_A T7I23.11 protein; chlor 99.2 3.9E-11 1.3E-15 84.2 9.0 82 19-100 35-129 (262)
150 2ghi_A Transport protein; mult 99.2 2.4E-12 8.2E-17 90.9 2.7 48 10-66 35-83 (260)
151 1wf3_A GTP-binding protein; GT 99.2 7.7E-11 2.6E-15 84.7 10.6 83 18-100 5-99 (301)
152 2d2e_A SUFC protein; ABC-ATPas 99.2 2.6E-12 8.9E-17 90.2 2.5 51 10-66 18-69 (250)
153 2pjz_A Hypothetical protein ST 99.2 2.8E-12 9.7E-17 90.8 2.4 47 10-66 20-67 (263)
154 2bbs_A Cystic fibrosis transme 99.2 3.2E-12 1.1E-16 91.7 2.5 46 10-63 53-99 (290)
155 1svi_A GTP-binding protein YSX 99.2 4.7E-11 1.6E-15 79.1 7.9 82 19-101 22-119 (195)
156 2qu8_A Putative nucleolar GTP- 99.2 1.1E-10 3.9E-15 79.7 9.6 86 19-104 28-125 (228)
157 3lxw_A GTPase IMAP family memb 99.2 2E-10 6.9E-15 80.1 10.5 81 19-99 20-117 (247)
158 3b1v_A Ferrous iron uptake tra 99.2 8E-11 2.7E-15 83.6 8.5 79 21-100 4-93 (272)
159 4fid_A G protein alpha subunit 99.2 4.1E-11 1.4E-15 87.8 6.9 49 50-98 147-195 (340)
160 3pqc_A Probable GTP-binding pr 99.2 6.3E-11 2.2E-15 78.1 7.2 80 20-100 23-117 (195)
161 3a1s_A Iron(II) transport prot 99.2 1.8E-10 6.3E-15 80.9 9.7 83 19-101 4-97 (258)
162 3gd7_A Fusion complex of cysti 99.2 6.1E-12 2.1E-16 93.6 1.6 49 10-67 36-85 (390)
163 2nq2_C Hypothetical ABC transp 99.2 9E-12 3.1E-16 87.7 2.2 45 10-62 20-65 (253)
164 1mky_A Probable GTP-binding pr 99.1 2.2E-10 7.6E-15 85.8 9.6 78 22-99 3-93 (439)
165 2xtp_A GTPase IMAP family memb 99.1 5E-10 1.7E-14 77.9 10.8 81 19-99 21-117 (260)
166 1htw_A HI0065; nucleotide-bind 99.1 8.3E-12 2.8E-16 82.4 1.5 35 9-43 21-56 (158)
167 2qtf_A Protein HFLX, GTP-bindi 99.1 1.3E-10 4.6E-15 85.5 7.9 78 23-101 182-271 (364)
168 3b5x_A Lipid A export ATP-bind 99.1 2.3E-11 7.9E-16 94.0 3.8 51 9-67 357-408 (582)
169 3i8s_A Ferrous iron transport 99.1 2.6E-10 9.1E-15 80.6 8.9 81 20-100 3-98 (274)
170 1jal_A YCHF protein; nucleotid 99.1 3.1E-10 1.1E-14 83.7 9.1 79 21-99 3-108 (363)
171 3b60_A Lipid A export ATP-bind 99.1 2.1E-11 7E-16 94.3 2.9 50 10-67 358-408 (582)
172 3dpu_A RAB family protein; roc 99.1 4.8E-11 1.6E-15 91.3 4.8 83 18-100 39-134 (535)
173 2ohf_A Protein OLA1, GTP-bindi 99.1 2.4E-10 8.1E-15 85.2 8.3 83 19-101 21-130 (396)
174 1pui_A ENGB, probable GTP-bind 99.1 1.3E-10 4.4E-15 78.0 6.3 84 16-100 21-121 (210)
175 3ohm_A Guanine nucleotide-bind 99.1 5.6E-10 1.9E-14 81.3 9.3 48 51-98 154-201 (327)
176 2yl4_A ATP-binding cassette SU 99.1 1.8E-11 6.1E-16 94.9 1.4 50 10-67 359-409 (595)
177 4a82_A Cystic fibrosis transme 99.1 1.8E-11 6.1E-16 94.6 1.4 50 10-67 356-406 (578)
178 3qf4_B Uncharacterized ABC tra 99.1 2.5E-11 8.5E-16 94.2 2.2 50 10-67 370-420 (598)
179 1mky_A Probable GTP-binding pr 99.1 5.1E-10 1.7E-14 83.8 8.9 79 21-99 181-275 (439)
180 3c5h_A Glucocorticoid receptor 99.1 1.1E-11 3.7E-16 86.8 -0.3 88 19-106 18-183 (255)
181 1ega_A Protein (GTP-binding pr 99.1 4.7E-10 1.6E-14 80.4 8.1 83 17-99 5-100 (301)
182 4dhe_A Probable GTP-binding pr 99.1 3.8E-10 1.3E-14 76.2 6.8 80 20-99 29-127 (223)
183 2hjg_A GTP-binding protein ENG 99.0 9.6E-11 3.3E-15 87.7 3.8 80 21-100 4-95 (436)
184 3qf4_A ABC transporter, ATP-bi 99.0 3.3E-11 1.1E-15 93.4 0.6 50 10-67 358-408 (587)
185 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 2E-09 6.9E-14 80.1 10.1 78 21-98 21-126 (392)
186 3gee_A MNME, tRNA modification 99.0 5.2E-10 1.8E-14 85.0 6.9 83 21-103 234-328 (476)
187 4dcu_A GTP-binding protein ENG 99.0 1.4E-10 4.7E-15 87.3 3.3 80 20-99 23-114 (456)
188 1xzp_A Probable tRNA modificat 99.0 5E-10 1.7E-14 85.2 6.2 81 21-101 244-337 (482)
189 1z6g_A Guanylate kinase; struc 99.0 8.1E-11 2.8E-15 80.7 1.3 34 10-43 12-46 (218)
190 1h65_A Chloroplast outer envel 99.0 2.5E-09 8.5E-14 75.2 8.9 81 19-99 38-131 (270)
191 2hjg_A GTP-binding protein ENG 99.0 1.4E-09 4.8E-14 81.4 7.6 81 21-101 176-271 (436)
192 3t34_A Dynamin-related protein 98.9 3.8E-09 1.3E-13 77.1 8.6 24 22-45 36-59 (360)
193 1lnz_A SPO0B-associated GTP-bi 98.9 8.6E-10 2.9E-14 80.7 5.0 78 22-99 160-248 (342)
194 1jwy_B Dynamin A GTPase domain 98.9 9.5E-09 3.3E-13 73.1 10.3 41 5-45 8-49 (315)
195 1udx_A The GTP-binding protein 98.9 2.7E-09 9.1E-14 79.9 7.3 86 13-98 149-246 (416)
196 3g5u_A MCG1178, multidrug resi 98.9 3.9E-10 1.3E-14 93.9 2.4 50 10-67 405-455 (1284)
197 3tr5_A RF-3, peptide chain rel 98.9 5.3E-09 1.8E-13 80.3 7.9 80 21-100 14-118 (528)
198 1tq4_A IIGP1, interferon-induc 98.9 3E-10 1E-14 85.1 0.6 35 9-43 37-92 (413)
199 2aka_B Dynamin-1; fusion prote 98.9 3.2E-08 1.1E-12 69.7 11.0 41 5-45 9-51 (299)
200 2e87_A Hypothetical protein PH 98.9 1.2E-08 4.1E-13 74.5 8.9 83 19-101 166-260 (357)
201 3geh_A MNME, tRNA modification 98.9 2.8E-09 9.5E-14 80.7 5.6 80 21-100 225-316 (462)
202 2dy1_A Elongation factor G; tr 98.9 1.7E-08 5.7E-13 79.3 10.2 83 17-99 5-109 (665)
203 1jny_A EF-1-alpha, elongation 98.9 3.3E-09 1.1E-13 79.5 5.8 80 20-99 6-119 (435)
204 2pt7_A CAG-ALFA; ATPase, prote 98.9 6E-10 2.1E-14 81.0 1.7 47 10-64 160-207 (330)
205 2iw3_A Elongation factor 3A; a 98.8 5.3E-10 1.8E-14 91.0 1.4 46 10-63 688-734 (986)
206 4dcu_A GTP-binding protein ENG 98.8 9E-09 3.1E-13 77.4 7.7 80 20-99 195-289 (456)
207 4f4c_A Multidrug resistance pr 98.8 1.1E-09 3.6E-14 91.5 2.8 50 10-67 433-483 (1321)
208 3g5u_A MCG1178, multidrug resi 98.8 6.2E-10 2.1E-14 92.6 1.3 50 10-67 1048-1098(1284)
209 2dby_A GTP-binding protein; GD 98.8 1.4E-08 4.8E-13 74.9 8.3 78 22-99 3-111 (368)
210 3euj_A Chromosome partition pr 98.8 2.6E-10 8.8E-15 86.9 -1.3 50 9-67 18-68 (483)
211 2dpy_A FLII, flagellum-specifi 98.8 3.7E-09 1.3E-13 79.6 4.8 47 9-64 146-193 (438)
212 4f4c_A Multidrug resistance pr 98.8 5.4E-10 1.8E-14 93.2 0.2 50 10-67 1094-1144(1321)
213 3ozx_A RNAse L inhibitor; ATP 98.8 1.3E-09 4.5E-14 83.9 2.3 47 14-68 287-334 (538)
214 2gza_A Type IV secretion syste 98.8 1.3E-09 4.5E-14 80.0 2.2 45 11-63 165-210 (361)
215 3t5d_A Septin-7; GTP-binding p 98.8 4.1E-08 1.4E-12 69.1 9.6 54 21-74 9-75 (274)
216 2obl_A ESCN; ATPase, hydrolase 98.8 4E-09 1.4E-13 77.3 4.5 46 9-63 60-106 (347)
217 3izq_1 HBS1P, elongation facto 98.8 1.9E-08 6.4E-13 78.5 8.4 81 19-99 166-280 (611)
218 2eyu_A Twitching motility prot 98.8 2E-09 6.8E-14 76.0 2.6 45 9-63 15-61 (261)
219 1dar_A EF-G, elongation factor 98.8 1.2E-08 4E-13 80.6 7.1 80 21-100 13-113 (691)
220 2v9p_A Replication protein E1; 98.8 1.7E-09 5.7E-14 78.2 1.9 35 9-43 114-149 (305)
221 2jeo_A Uridine-cytidine kinase 98.8 3.9E-09 1.3E-13 73.2 3.3 35 9-43 13-48 (245)
222 3b9q_A Chloroplast SRP recepto 98.8 2.4E-09 8.3E-14 77.0 2.3 44 13-64 92-136 (302)
223 1wb1_A Translation elongation 98.7 2.7E-08 9.2E-13 75.6 7.8 80 20-99 19-108 (482)
224 3sop_A Neuronal-specific septi 98.7 2.7E-09 9.4E-14 75.6 2.2 35 22-64 4-38 (270)
225 2h5e_A Peptide chain release f 98.7 7.7E-08 2.6E-12 73.9 10.3 80 20-99 13-117 (529)
226 3sjy_A Translation initiation 98.7 5.8E-08 2E-12 71.9 9.2 82 19-100 7-111 (403)
227 4gp7_A Metallophosphoesterase; 98.7 3.7E-09 1.3E-13 69.8 2.3 28 13-40 1-29 (171)
228 3p26_A Elongation factor 1 alp 98.7 4.1E-08 1.4E-12 74.4 8.4 82 19-100 32-147 (483)
229 1wxq_A GTP-binding protein; st 98.7 3.8E-08 1.3E-12 73.2 8.0 79 22-100 2-114 (397)
230 2xex_A Elongation factor G; GT 98.7 1.9E-08 6.5E-13 79.4 6.3 80 21-100 11-111 (693)
231 2qm8_A GTPase/ATPase; G protei 98.7 3.6E-09 1.2E-13 77.1 1.9 35 9-43 43-78 (337)
232 2npi_A Protein CLP1; CLP1-PCF1 98.7 2.6E-09 8.9E-14 80.9 1.2 46 10-63 127-175 (460)
233 4a9a_A Ribosome-interacting GT 98.7 7.8E-08 2.7E-12 71.2 9.0 78 22-99 74-161 (376)
234 1yqt_A RNAse L inhibitor; ATP- 98.7 3.8E-09 1.3E-13 81.3 1.8 33 10-43 37-70 (538)
235 3izy_P Translation initiation 98.7 1.1E-09 3.7E-14 84.4 -1.2 81 19-99 3-87 (537)
236 2qnr_A Septin-2, protein NEDD5 98.7 1.8E-08 6.2E-13 72.2 5.2 68 22-89 20-115 (301)
237 2og2_A Putative signal recogni 98.7 5.2E-09 1.8E-13 77.1 2.3 44 13-64 149-193 (359)
238 3j2k_7 ERF3, eukaryotic polype 98.7 7E-08 2.4E-12 72.4 8.5 80 21-100 18-131 (439)
239 2elf_A Protein translation elo 98.7 2.3E-08 8E-13 73.7 5.8 70 22-96 23-92 (370)
240 1f60_A Elongation factor EEF1A 98.7 7.4E-08 2.5E-12 72.6 8.5 80 20-99 7-120 (458)
241 2qag_A Septin-2, protein NEDD5 98.7 1.4E-08 4.6E-13 74.6 4.2 71 21-91 38-136 (361)
242 3bk7_A ABC transporter ATP-bin 98.7 3.1E-09 1.1E-13 82.8 0.9 42 12-61 373-415 (607)
243 1n0u_A EF-2, elongation factor 98.7 2.7E-08 9.2E-13 80.0 6.2 81 21-101 20-135 (842)
244 1tf7_A KAIC; homohexamer, hexa 98.7 6.3E-09 2.1E-13 79.5 2.3 48 9-64 26-77 (525)
245 2c78_A Elongation factor TU-A; 98.7 1E-07 3.6E-12 70.5 8.7 81 20-100 11-111 (405)
246 1yqt_A RNAse L inhibitor; ATP- 98.7 4.6E-09 1.6E-13 80.8 1.4 42 12-61 303-345 (538)
247 1r5b_A Eukaryotic peptide chai 98.7 5.6E-08 1.9E-12 73.5 7.2 81 20-100 43-157 (467)
248 1zun_B Sulfate adenylate trans 98.7 1.6E-07 5.6E-12 70.1 9.6 80 21-100 25-140 (434)
249 1sq5_A Pantothenate kinase; P- 98.7 7.3E-09 2.5E-13 74.4 2.1 35 19-61 78-115 (308)
250 3qq5_A Small GTP-binding prote 98.6 1.6E-08 5.4E-13 75.9 3.9 78 21-98 35-124 (423)
251 3lnc_A Guanylate kinase, GMP k 98.6 7.6E-09 2.6E-13 70.9 1.7 34 10-43 16-51 (231)
252 3bk7_A ABC transporter ATP-bin 98.6 7.2E-09 2.5E-13 80.8 1.7 33 10-43 107-140 (607)
253 1znw_A Guanylate kinase, GMP k 98.6 1.4E-08 4.6E-13 68.7 2.8 28 16-43 15-43 (207)
254 1d2e_A Elongation factor TU (E 98.6 5.3E-08 1.8E-12 72.1 6.1 80 20-99 3-101 (397)
255 1zp6_A Hypothetical protein AT 98.6 4.5E-08 1.5E-12 64.8 5.1 26 18-43 6-32 (191)
256 1g7s_A Translation initiation 98.6 2.7E-08 9.3E-13 77.4 4.3 81 19-99 4-105 (594)
257 3c8u_A Fructokinase; YP_612366 98.6 4.6E-08 1.6E-12 66.2 4.8 48 10-65 11-62 (208)
258 3ux8_A Excinuclease ABC, A sub 98.6 1.1E-08 3.7E-13 80.2 1.8 29 9-37 32-61 (670)
259 2yhs_A FTSY, cell division pro 98.6 1.2E-08 4E-13 78.1 1.9 42 13-62 285-327 (503)
260 3ozx_A RNAse L inhibitor; ATP 98.6 1.5E-08 5E-13 78.1 2.3 34 18-59 22-56 (538)
261 2qpt_A EH domain-containing pr 98.6 7.1E-08 2.4E-12 74.4 5.9 79 21-99 66-200 (550)
262 2x2e_A Dynamin-1; nitration, h 98.6 2.1E-07 7E-12 67.8 8.0 41 5-45 14-56 (353)
263 2oap_1 GSPE-2, type II secreti 98.6 1.6E-08 5.5E-13 77.4 2.2 47 9-63 248-295 (511)
264 1u0l_A Probable GTPase ENGC; p 98.6 1.6E-08 5.4E-13 72.4 1.7 33 21-61 169-202 (301)
265 3tr0_A Guanylate kinase, GMP k 98.6 3E-08 1E-12 66.2 2.9 28 16-43 2-30 (205)
266 2rdo_7 EF-G, elongation factor 98.6 2E-07 6.9E-12 73.7 7.9 80 21-100 11-118 (704)
267 4aby_A DNA repair protein RECN 98.5 1.2E-08 4.2E-13 75.1 0.8 34 10-43 50-83 (415)
268 1zo1_I IF2, translation initia 98.5 1.1E-08 3.9E-13 78.2 0.5 81 19-99 3-86 (501)
269 3b85_A Phosphate starvation-in 98.5 2.2E-08 7.4E-13 68.5 1.8 31 9-43 14-45 (208)
270 1s96_A Guanylate kinase, GMP k 98.5 2.4E-08 8.1E-13 68.8 1.9 26 18-43 13-39 (219)
271 2x8a_A Nuclear valosin-contain 98.5 8.7E-08 3E-12 67.8 4.7 34 9-43 34-67 (274)
272 2f1r_A Molybdopterin-guanine d 98.5 1.9E-08 6.5E-13 66.9 1.0 41 22-70 4-47 (171)
273 3szr_A Interferon-induced GTP- 98.5 6.7E-08 2.3E-12 75.3 4.2 42 21-70 46-88 (608)
274 1kk1_A EIF2gamma; initiation o 98.5 5.9E-07 2E-11 66.6 8.9 80 20-99 10-118 (410)
275 3j16_B RLI1P; ribosome recycli 98.5 2.7E-08 9.1E-13 77.6 1.5 35 17-59 99-134 (608)
276 1s0u_A EIF-2-gamma, translatio 98.5 5.5E-07 1.9E-11 66.8 8.5 81 19-99 7-116 (408)
277 2rcn_A Probable GTPase ENGC; Y 98.5 4.8E-08 1.6E-12 72.0 2.7 33 21-61 216-249 (358)
278 2j69_A Bacterial dynamin-like 98.5 2.5E-07 8.5E-12 73.1 6.8 82 19-100 68-213 (695)
279 3j16_B RLI1P; ribosome recycli 98.5 3.3E-08 1.1E-12 77.2 1.7 33 11-43 363-401 (608)
280 1cr0_A DNA primase/helicase; R 98.5 4.3E-08 1.5E-12 69.4 1.7 35 9-43 23-58 (296)
281 4a74_A DNA repair and recombin 98.5 1.2E-07 4.2E-12 64.0 3.9 27 17-43 21-48 (231)
282 1p9r_A General secretion pathw 98.5 6.9E-08 2.4E-12 72.3 2.8 45 9-62 157-201 (418)
283 2qag_B Septin-6, protein NEDD5 98.5 4.8E-08 1.6E-12 73.4 1.9 35 11-45 30-67 (427)
284 3e70_C DPA, signal recognition 98.4 5.6E-08 1.9E-12 70.7 1.7 39 19-65 127-166 (328)
285 1azs_C GS-alpha; complex (lyas 98.4 2.3E-07 7.9E-12 69.2 5.0 47 53-99 206-252 (402)
286 2yv5_A YJEQ protein; hydrolase 98.4 5.8E-08 2E-12 69.6 1.4 22 21-43 165-187 (302)
287 1ye8_A Protein THEP1, hypothet 98.4 1.4E-07 4.9E-12 62.8 3.2 22 22-43 2-23 (178)
288 1rj9_A FTSY, signal recognitio 98.4 4.7E-08 1.6E-12 70.4 0.8 38 20-65 101-139 (304)
289 2iw3_A Elongation factor 3A; a 98.4 4.6E-08 1.6E-12 79.8 0.8 35 10-44 450-485 (986)
290 1t9h_A YLOQ, probable GTPase E 98.4 4.7E-08 1.6E-12 70.6 0.4 28 16-43 168-196 (307)
291 3cb4_D GTP-binding protein LEP 98.4 4.1E-07 1.4E-11 70.9 5.7 79 22-100 6-107 (599)
292 1lw7_A Transcriptional regulat 98.4 7.8E-08 2.7E-12 70.3 1.5 33 11-43 158-193 (365)
293 2ywe_A GTP-binding protein LEP 98.4 7.9E-07 2.7E-11 69.3 7.2 79 22-100 8-109 (600)
294 1cip_A Protein (guanine nucleo 98.4 2.8E-07 9.5E-12 67.6 4.4 52 50-101 179-230 (353)
295 2qag_C Septin-7; cell cycle, c 98.4 2.1E-07 7.3E-12 69.7 3.9 24 22-45 33-56 (418)
296 2ehv_A Hypothetical protein PH 98.4 1.2E-07 4E-12 64.9 1.9 25 17-41 26-51 (251)
297 1lvg_A Guanylate kinase, GMP k 98.4 1.3E-07 4.6E-12 63.6 2.2 24 20-43 3-27 (198)
298 3ux8_A Excinuclease ABC, A sub 98.4 4.6E-08 1.6E-12 76.7 -0.3 32 10-41 337-369 (670)
299 3aez_A Pantothenate kinase; tr 98.3 1.9E-07 6.5E-12 67.4 2.8 26 18-43 87-113 (312)
300 3vaa_A Shikimate kinase, SK; s 98.3 2.1E-07 7.2E-12 62.4 2.9 33 10-42 14-47 (199)
301 2i3b_A HCR-ntpase, human cance 98.3 5.2E-08 1.8E-12 65.7 -0.2 22 22-43 3-24 (189)
302 3kta_A Chromosome segregation 98.3 2E-07 7E-12 61.2 2.7 31 12-42 18-48 (182)
303 3mca_A HBS1, elongation factor 98.3 7E-08 2.4E-12 75.0 0.3 78 22-99 179-290 (592)
304 1ixz_A ATP-dependent metallopr 98.3 4.6E-07 1.6E-11 62.6 4.2 34 9-43 39-72 (254)
305 3a00_A Guanylate kinase, GMP k 98.3 1.9E-07 6.5E-12 62.1 2.1 21 23-43 4-24 (186)
306 2w0m_A SSO2452; RECA, SSPF, un 98.3 2.2E-07 7.4E-12 62.6 2.2 35 9-43 10-46 (235)
307 1kgd_A CASK, peripheral plasma 98.3 3.2E-07 1.1E-11 60.7 2.9 23 21-43 5-28 (180)
308 1nij_A Hypothetical protein YJ 98.3 2E-07 7E-12 67.1 2.0 44 23-66 7-50 (318)
309 2ewv_A Twitching motility prot 98.3 2.2E-07 7.6E-12 68.4 2.1 31 11-43 128-159 (372)
310 2p67_A LAO/AO transport system 98.3 4.6E-07 1.6E-11 65.8 3.8 34 9-42 44-78 (341)
311 1iy2_A ATP-dependent metallopr 98.3 5.9E-07 2E-11 63.0 4.2 34 9-43 63-96 (278)
312 3asz_A Uridine kinase; cytidin 98.3 4.6E-07 1.6E-11 60.9 3.4 25 19-43 4-29 (211)
313 1qhl_A Protein (cell division 98.3 2.1E-08 7.2E-13 69.6 -3.4 36 23-66 30-65 (227)
314 2j41_A Guanylate kinase; GMP, 98.3 6.2E-07 2.1E-11 59.7 3.7 26 18-43 3-29 (207)
315 2bbw_A Adenylate kinase 4, AK4 98.3 2.3E-07 7.7E-12 64.1 1.5 24 20-43 27-53 (246)
316 3avx_A Elongation factor TS, e 98.2 3E-06 1E-10 70.5 7.7 80 21-100 297-395 (1289)
317 3uie_A Adenylyl-sulfate kinase 98.2 5.3E-07 1.8E-11 60.4 2.6 30 14-43 18-48 (200)
318 3nwj_A ATSK2; P loop, shikimat 98.2 3.5E-07 1.2E-11 64.2 1.6 34 9-42 33-70 (250)
319 1svm_A Large T antigen; AAA+ f 98.2 7.7E-07 2.6E-11 65.9 3.4 37 7-43 155-192 (377)
320 4eun_A Thermoresistant glucoki 98.2 8.6E-07 2.9E-11 59.4 2.9 26 18-43 26-52 (200)
321 1zcb_A G alpha I/13; GTP-bindi 98.2 1E-06 3.5E-11 64.8 3.2 50 51-100 188-237 (362)
322 2bdt_A BH3686; alpha-beta prot 98.1 1.2E-06 4E-11 58.0 3.1 20 23-42 5-24 (189)
323 3tau_A Guanylate kinase, GMP k 98.1 1.1E-06 3.8E-11 59.3 3.0 25 19-43 6-31 (208)
324 3jvv_A Twitching mobility prot 98.1 6.7E-07 2.3E-11 65.7 2.0 26 18-43 121-146 (356)
325 1wb9_A DNA mismatch repair pro 98.1 5.8E-07 2E-11 72.1 1.3 34 10-44 597-631 (800)
326 3ec2_A DNA replication protein 98.1 1.2E-06 4.3E-11 57.5 2.7 28 16-43 33-61 (180)
327 3thx_B DNA mismatch repair pro 98.1 4.4E-07 1.5E-11 73.7 0.5 34 10-43 662-696 (918)
328 1pzn_A RAD51, DNA repair and r 98.1 2.6E-06 8.8E-11 62.2 4.3 29 15-43 125-154 (349)
329 3cnl_A YLQF, putative uncharac 98.1 9E-07 3.1E-11 62.3 1.7 55 21-76 100-156 (262)
330 2www_A Methylmalonic aciduria 98.1 4.4E-06 1.5E-10 61.0 5.3 22 21-42 75-96 (349)
331 3qf7_A RAD50; ABC-ATPase, ATPa 98.1 1.2E-06 4E-11 64.4 2.0 30 12-41 15-44 (365)
332 2vp4_A Deoxynucleoside kinase; 98.1 2E-06 6.8E-11 59.0 3.0 29 15-43 14-43 (230)
333 1kag_A SKI, shikimate kinase I 98.0 2.5E-06 8.6E-11 55.4 2.9 22 22-43 6-27 (173)
334 1knq_A Gluconate kinase; ALFA/ 98.0 3.4E-06 1.1E-10 55.0 3.5 25 19-43 6-31 (175)
335 3ney_A 55 kDa erythrocyte memb 98.0 2.7E-06 9.2E-11 57.8 3.0 25 19-43 17-42 (197)
336 4e22_A Cytidylate kinase; P-lo 98.0 9.7E-07 3.3E-11 61.5 0.7 22 20-41 26-48 (252)
337 1rz3_A Hypothetical protein rb 98.0 5.7E-06 1.9E-10 55.5 4.3 26 18-43 19-45 (201)
338 3thx_A DNA mismatch repair pro 98.0 1.4E-06 4.8E-11 70.9 1.4 31 10-40 651-682 (934)
339 1f2t_A RAD50 ABC-ATPase; DNA d 98.0 2.6E-06 8.9E-11 55.1 2.3 25 17-41 20-44 (149)
340 1ewq_A DNA mismatch repair pro 98.0 1.4E-06 4.8E-11 69.6 1.1 32 10-44 568-600 (765)
341 2o5v_A DNA replication and rep 98.0 2.4E-06 8.4E-11 62.8 2.1 32 11-42 17-48 (359)
342 2xtz_A Guanine nucleotide-bind 98.0 2.7E-06 9.3E-11 62.4 2.3 36 63-98 182-217 (354)
343 1n0w_A DNA repair protein RAD5 97.9 6.7E-06 2.3E-10 55.8 3.7 27 17-43 20-47 (243)
344 2cvh_A DNA repair and recombin 97.9 7.5E-06 2.6E-10 54.8 3.7 33 10-42 8-42 (220)
345 3m6a_A ATP-dependent protease 97.9 8.8E-06 3E-10 62.5 4.6 46 10-63 98-143 (543)
346 1puj_A YLQF, conserved hypothe 97.9 1.4E-05 4.7E-10 56.8 5.2 55 20-75 120-176 (282)
347 2o8b_B DNA mismatch repair pro 97.9 2.7E-06 9.1E-11 69.8 1.3 33 10-43 771-811 (1022)
348 3cr8_A Sulfate adenylyltranfer 97.9 4.1E-06 1.4E-10 64.7 2.3 27 17-43 365-392 (552)
349 2kjq_A DNAA-related protein; s 97.9 5.1E-06 1.7E-10 53.7 2.3 24 20-43 35-59 (149)
350 1zu4_A FTSY; GTPase, signal re 97.9 4.4E-06 1.5E-10 60.5 2.0 32 12-43 96-128 (320)
351 2ygr_A Uvrabc system protein A 97.9 1.8E-06 6.2E-11 70.5 -0.3 32 10-41 657-689 (993)
352 1in4_A RUVB, holliday junction 97.8 2.9E-06 1E-10 61.2 0.7 22 22-43 53-74 (334)
353 1cke_A CK, MSSA, protein (cyti 97.8 9.4E-06 3.2E-10 54.8 3.2 23 21-43 6-28 (227)
354 3tqc_A Pantothenate kinase; bi 97.8 5E-06 1.7E-10 60.3 1.8 22 22-43 94-115 (321)
355 2if2_A Dephospho-COA kinase; a 97.8 1.1E-05 3.8E-10 53.7 3.3 22 22-43 3-24 (204)
356 1vma_A Cell division protein F 97.8 5.3E-06 1.8E-10 59.7 1.8 29 15-43 98-127 (306)
357 2vf7_A UVRA2, excinuclease ABC 97.8 1.1E-06 3.8E-11 70.8 -2.0 33 10-42 512-546 (842)
358 2qt1_A Nicotinamide riboside k 97.8 1.5E-05 5.3E-10 53.3 4.0 27 17-43 17-44 (207)
359 1f5n_A Interferon-induced guan 97.8 5.9E-05 2E-09 58.7 7.7 65 9-75 29-102 (592)
360 1e69_A Chromosome segregation 97.8 5.1E-06 1.8E-10 59.7 1.7 28 14-41 18-45 (322)
361 1jjv_A Dephospho-COA kinase; P 97.8 1.1E-05 3.8E-10 53.9 3.1 22 22-43 4-25 (206)
362 1bif_A 6-phosphofructo-2-kinas 97.8 6.1E-07 2.1E-11 67.6 -3.5 81 19-99 38-132 (469)
363 2r6f_A Excinuclease ABC subuni 97.8 2.2E-06 7.5E-11 69.9 -1.0 32 10-41 639-671 (972)
364 1sxj_E Activator 1 40 kDa subu 97.8 1.5E-05 5.1E-10 57.2 3.4 20 23-42 39-58 (354)
365 3qks_A DNA double-strand break 97.8 9.8E-06 3.3E-10 54.8 2.3 25 17-41 20-44 (203)
366 2qor_A Guanylate kinase; phosp 97.7 1.7E-05 5.7E-10 53.2 3.1 23 20-42 11-34 (204)
367 3t61_A Gluconokinase; PSI-biol 97.7 1.6E-05 5.3E-10 53.1 2.9 21 22-42 20-40 (202)
368 1ex7_A Guanylate kinase; subst 97.7 1.9E-05 6.5E-10 53.1 3.1 20 23-42 4-23 (186)
369 4eaq_A DTMP kinase, thymidylat 97.7 2.3E-05 7.9E-10 53.9 3.5 32 12-43 14-49 (229)
370 3qkt_A DNA double-strand break 97.7 1.6E-05 5.5E-10 57.5 2.8 26 16-41 19-44 (339)
371 3p32_A Probable GTPase RV1496/ 97.7 0.00028 9.7E-09 51.2 9.2 21 21-41 80-100 (355)
372 3kb2_A SPBC2 prophage-derived 97.7 2.2E-05 7.7E-10 50.4 3.0 21 22-42 3-23 (173)
373 1nlf_A Regulatory protein REPA 97.7 1.8E-05 6.2E-10 55.5 2.6 26 18-43 27-53 (279)
374 2pez_A Bifunctional 3'-phospho 97.7 2.7E-05 9.3E-10 50.9 3.3 24 20-43 4-28 (179)
375 3pih_A Uvrabc system protein A 97.7 6.8E-06 2.3E-10 66.8 0.2 28 10-37 599-627 (916)
376 1w1w_A Structural maintenance 97.7 1.8E-05 6.1E-10 58.9 2.4 26 18-43 23-49 (430)
377 1y63_A LMAJ004144AAA protein; 97.7 2.9E-05 9.9E-10 51.2 3.2 30 14-43 3-33 (184)
378 2dhr_A FTSH; AAA+ protein, hex 97.6 2.7E-05 9.2E-10 59.5 3.3 32 11-43 56-87 (499)
379 1qhx_A CPT, protein (chloramph 97.6 3E-05 1E-09 50.4 3.1 21 22-42 5-25 (178)
380 1tf7_A KAIC; homohexamer, hexa 97.6 3.3E-05 1.1E-09 58.9 3.5 29 15-43 275-304 (525)
381 2yvu_A Probable adenylyl-sulfa 97.6 4.8E-05 1.6E-09 50.0 3.7 27 17-43 9-36 (186)
382 3lw7_A Adenylate kinase relate 97.6 3.7E-05 1.3E-09 49.2 3.0 19 23-41 4-22 (179)
383 1m7g_A Adenylylsulfate kinase; 97.6 2.5E-05 8.6E-10 52.5 2.2 26 18-43 22-48 (211)
384 2dr3_A UPF0273 protein PH0284; 97.6 5.3E-05 1.8E-09 51.3 3.6 31 11-41 12-44 (247)
385 1ly1_A Polynucleotide kinase; 97.6 4.5E-05 1.5E-09 49.3 3.1 21 22-42 4-24 (181)
386 3k1j_A LON protease, ATP-depen 97.6 2.9E-05 9.9E-10 60.2 2.5 35 9-43 48-83 (604)
387 1lv7_A FTSH; alpha/beta domain 97.6 4.1E-05 1.4E-09 52.8 2.9 22 22-43 47-68 (257)
388 2jaq_A Deoxyguanosine kinase; 97.6 5.2E-05 1.8E-09 50.0 3.3 21 22-42 2-22 (205)
389 1ls1_A Signal recognition part 97.5 2.2E-05 7.5E-10 56.0 1.4 29 13-43 92-121 (295)
390 1odf_A YGR205W, hypothetical 3 97.5 0.00013 4.3E-09 52.1 5.2 25 19-43 29-54 (290)
391 1nks_A Adenylate kinase; therm 97.5 5.8E-05 2E-09 49.3 3.2 20 23-42 4-23 (194)
392 3cm0_A Adenylate kinase; ATP-b 97.5 6.3E-05 2.1E-09 49.2 3.4 20 22-41 6-25 (186)
393 1gvn_B Zeta; postsegregational 97.5 0.00011 3.6E-09 52.2 4.7 24 19-42 31-55 (287)
394 1kht_A Adenylate kinase; phosp 97.5 5.6E-05 1.9E-09 49.3 3.1 21 22-42 5-25 (192)
395 3auy_A DNA double-strand break 97.5 4.4E-05 1.5E-09 55.8 2.6 28 14-41 19-46 (371)
396 2px0_A Flagellar biosynthesis 97.5 8.3E-05 2.8E-09 53.1 3.9 24 20-43 104-128 (296)
397 2p5t_B PEZT; postsegregational 97.5 7.9E-05 2.7E-09 51.6 3.7 32 10-42 22-54 (253)
398 2rhm_A Putative kinase; P-loop 97.5 8.1E-05 2.8E-09 48.7 3.5 21 22-42 7-27 (193)
399 1np6_A Molybdopterin-guanine d 97.5 6.4E-05 2.2E-09 49.9 2.9 22 22-43 8-29 (174)
400 1via_A Shikimate kinase; struc 97.5 6.9E-05 2.4E-09 48.8 3.1 21 22-42 6-26 (175)
401 1gtv_A TMK, thymidylate kinase 97.4 3.2E-05 1.1E-09 51.6 1.2 20 23-42 3-22 (214)
402 3trf_A Shikimate kinase, SK; a 97.4 8.8E-05 3E-09 48.5 3.3 21 22-42 7-27 (185)
403 4ad8_A DNA repair protein RECN 97.4 1.7E-05 5.8E-10 60.4 -0.4 31 11-41 51-81 (517)
404 1uf9_A TT1252 protein; P-loop, 97.4 0.00012 4.1E-09 48.3 3.7 24 20-43 8-31 (203)
405 3fb4_A Adenylate kinase; psych 97.4 9.7E-05 3.3E-09 49.5 3.3 20 22-41 2-21 (216)
406 3lda_A DNA repair protein RAD5 97.4 9.2E-05 3.2E-09 55.1 3.4 25 17-41 174-199 (400)
407 3vqt_A RF-3, peptide chain rel 97.4 0.0011 3.6E-08 51.2 9.4 78 20-97 30-133 (548)
408 2plr_A DTMP kinase, probable t 97.4 0.00011 3.8E-09 48.7 3.5 21 22-42 6-26 (213)
409 3iij_A Coilin-interacting nucl 97.4 9.3E-05 3.2E-09 48.3 3.0 21 22-42 13-33 (180)
410 3ec1_A YQEH GTPase; atnos1, at 97.4 0.00011 3.8E-09 53.9 3.7 55 20-75 162-223 (369)
411 2ze6_A Isopentenyl transferase 97.4 8.6E-05 3E-09 51.6 2.9 20 23-42 4-23 (253)
412 2ce7_A Cell division protein F 97.4 0.00014 4.9E-09 55.2 4.2 31 12-43 42-72 (476)
413 3dl0_A Adenylate kinase; phosp 97.4 0.00011 3.8E-09 49.2 3.3 20 22-41 2-21 (216)
414 2z0h_A DTMP kinase, thymidylat 97.4 0.00011 3.6E-09 48.3 3.0 20 23-42 3-22 (197)
415 1sxj_C Activator 1 40 kDa subu 97.4 5.4E-05 1.9E-09 54.4 1.7 21 23-43 49-69 (340)
416 2v54_A DTMP kinase, thymidylat 97.4 0.00014 4.8E-09 48.1 3.5 22 22-43 6-27 (204)
417 1vht_A Dephospho-COA kinase; s 97.4 0.00011 3.9E-09 49.3 3.1 22 22-43 6-27 (218)
418 2c95_A Adenylate kinase 1; tra 97.4 0.00016 5.3E-09 47.5 3.6 21 22-42 11-31 (196)
419 2wwf_A Thymidilate kinase, put 97.3 0.00016 5.3E-09 48.1 3.6 21 22-42 12-32 (212)
420 1tev_A UMP-CMP kinase; ploop, 97.3 0.00015 5E-09 47.4 3.4 21 22-42 5-25 (196)
421 3h2y_A GTPase family protein; 97.3 0.00017 5.8E-09 52.9 4.0 24 20-43 160-183 (368)
422 2pt5_A Shikimate kinase, SK; a 97.3 0.00015 5.2E-09 46.5 3.3 21 22-42 2-22 (168)
423 1nn5_A Similar to deoxythymidy 97.3 0.00017 5.9E-09 47.9 3.6 21 22-42 11-31 (215)
424 1zd8_A GTP:AMP phosphotransfer 97.3 0.00017 5.9E-09 48.8 3.6 22 21-42 8-29 (227)
425 2bwj_A Adenylate kinase 5; pho 97.3 0.00016 5.4E-09 47.5 3.2 21 22-42 14-34 (199)
426 3bos_A Putative DNA replicatio 97.3 0.00022 7.6E-09 47.7 4.0 24 19-42 51-74 (242)
427 2cdn_A Adenylate kinase; phosp 97.3 0.00021 7.4E-09 47.4 3.8 22 21-42 21-42 (201)
428 2pbr_A DTMP kinase, thymidylat 97.3 0.00015 5.2E-09 47.3 3.0 20 23-42 3-22 (195)
429 1zak_A Adenylate kinase; ATP:A 97.3 0.00016 5.3E-09 48.8 3.2 21 22-42 7-27 (222)
430 2hf9_A Probable hydrogenase ni 97.3 0.00018 6E-09 48.3 3.4 25 20-44 38-62 (226)
431 1e4v_A Adenylate kinase; trans 97.3 0.00018 6.1E-09 48.4 3.4 21 22-42 2-22 (214)
432 1e6c_A Shikimate kinase; phosp 97.3 0.00016 5.4E-09 46.6 3.0 21 22-42 4-24 (173)
433 1qf9_A UMP/CMP kinase, protein 97.3 0.00018 6.2E-09 46.8 3.2 21 22-42 8-28 (194)
434 1q3t_A Cytidylate kinase; nucl 97.3 0.00019 6.6E-09 49.0 3.4 22 21-42 17-38 (236)
435 2wsm_A Hydrogenase expression/ 97.3 0.00021 7.1E-09 47.8 3.4 23 21-43 31-53 (221)
436 1jbk_A CLPB protein; beta barr 97.2 0.00044 1.5E-08 44.3 4.8 24 20-43 43-66 (195)
437 2ga8_A Hypothetical 39.9 kDa p 97.2 0.00016 5.5E-09 53.2 2.9 35 9-43 10-47 (359)
438 1aky_A Adenylate kinase; ATP:A 97.2 0.00024 8.1E-09 47.9 3.5 22 21-42 5-26 (220)
439 3r20_A Cytidylate kinase; stru 97.2 0.00024 8.1E-09 49.3 3.4 21 21-41 10-30 (233)
440 3tlx_A Adenylate kinase 2; str 97.2 0.00025 8.7E-09 48.9 3.5 23 20-42 29-51 (243)
441 2iyv_A Shikimate kinase, SK; t 97.2 0.00023 7.9E-09 46.4 3.0 21 22-42 4-24 (184)
442 2xb4_A Adenylate kinase; ATP-b 97.2 0.00027 9.3E-09 48.0 3.3 21 22-42 2-22 (223)
443 2vli_A Antibiotic resistance p 97.2 0.00017 5.8E-09 46.9 2.2 21 22-42 7-27 (183)
444 2qby_A CDC6 homolog 1, cell di 97.2 0.00033 1.1E-08 50.1 3.8 23 21-43 46-68 (386)
445 1ukz_A Uridylate kinase; trans 97.2 0.00036 1.2E-08 46.2 3.8 20 22-41 17-36 (203)
446 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.00025 8.6E-09 49.3 3.1 21 22-42 6-26 (260)
447 1xjc_A MOBB protein homolog; s 97.1 0.00026 8.9E-09 46.9 2.9 21 22-42 6-26 (169)
448 3ake_A Cytidylate kinase; CMP 97.1 0.00028 9.5E-09 46.7 2.9 21 22-42 4-24 (208)
449 1fnn_A CDC6P, cell division co 97.1 0.00043 1.5E-08 49.7 4.0 22 22-43 46-67 (389)
450 2ffh_A Protein (FFH); SRP54, s 97.1 0.00021 7.2E-09 53.6 2.4 28 14-43 93-121 (425)
451 1zuh_A Shikimate kinase; alpha 97.1 0.00034 1.2E-08 45.1 3.0 21 22-42 9-29 (168)
452 3be4_A Adenylate kinase; malar 97.1 0.00039 1.3E-08 46.8 3.4 21 22-42 7-27 (217)
453 2w58_A DNAI, primosome compone 97.1 0.0011 3.7E-08 43.8 5.5 22 21-42 55-76 (202)
454 1ak2_A Adenylate kinase isoenz 97.1 0.00045 1.6E-08 47.0 3.6 24 19-42 15-38 (233)
455 1ypw_A Transitional endoplasmi 97.0 0.00051 1.7E-08 55.1 4.3 27 17-43 234-261 (806)
456 2p65_A Hypothetical protein PF 97.0 0.00059 2E-08 43.8 3.9 24 20-43 43-66 (187)
457 1ltq_A Polynucleotide kinase; 97.0 0.00037 1.3E-08 48.9 3.1 21 22-42 4-24 (301)
458 2vf7_A UVRA2, excinuclease ABC 97.0 0.0001 3.5E-09 59.5 0.2 30 9-38 24-54 (842)
459 3umf_A Adenylate kinase; rossm 97.0 0.00061 2.1E-08 46.7 3.8 26 17-42 25-51 (217)
460 3b9p_A CG5977-PA, isoform A; A 97.0 0.00046 1.6E-08 48.3 3.2 24 20-43 54-77 (297)
461 3hr8_A Protein RECA; alpha and 97.0 0.00047 1.6E-08 50.6 3.4 27 17-43 57-84 (356)
462 1u0l_A Probable GTPase ENGC; p 97.0 0.00018 6.1E-09 51.2 1.0 68 35-105 32-103 (301)
463 3h4m_A Proteasome-activating n 97.0 0.00069 2.3E-08 47.0 3.9 23 21-43 52-74 (285)
464 3cf0_A Transitional endoplasmi 97.0 0.00051 1.7E-08 48.6 3.3 25 19-43 47-72 (301)
465 3pih_A Uvrabc system protein A 96.9 0.00015 5.2E-09 59.0 0.5 30 9-38 12-42 (916)
466 2f6r_A COA synthase, bifunctio 96.9 0.00062 2.1E-08 48.0 3.6 21 22-42 77-97 (281)
467 1j8m_F SRP54, signal recogniti 96.9 0.00043 1.5E-08 49.4 2.7 27 14-41 92-119 (297)
468 1uj2_A Uridine-cytidine kinase 96.9 0.00065 2.2E-08 46.8 3.4 21 22-42 24-44 (252)
469 2r62_A Cell division protease 96.9 0.00034 1.2E-08 48.3 1.9 20 23-42 47-66 (268)
470 3l82_B F-box only protein 4; T 96.9 0.0006 2.1E-08 47.1 3.0 32 71-102 109-140 (227)
471 2v1u_A Cell division control p 96.9 0.0009 3.1E-08 47.8 4.0 22 21-42 45-66 (387)
472 2grj_A Dephospho-COA kinase; T 96.9 0.00063 2.2E-08 45.6 3.0 22 22-43 14-35 (192)
473 1njg_A DNA polymerase III subu 96.9 0.001 3.4E-08 44.0 4.0 21 22-42 47-67 (250)
474 3sr0_A Adenylate kinase; phosp 96.9 0.00074 2.5E-08 45.8 3.3 20 23-42 3-22 (206)
475 3zvl_A Bifunctional polynucleo 96.9 0.00069 2.3E-08 50.3 3.3 20 23-42 261-280 (416)
476 2ygr_A Uvrabc system protein A 96.8 0.00024 8.3E-09 58.2 0.9 30 9-38 34-64 (993)
477 4fcw_A Chaperone protein CLPB; 96.8 0.00073 2.5E-08 47.3 3.2 23 21-43 48-70 (311)
478 2r6f_A Excinuclease ABC subuni 96.8 0.00025 8.6E-09 58.0 0.8 30 9-38 32-62 (972)
479 1zcb_A G alpha I/13; GTP-bindi 96.8 0.00074 2.5E-08 49.5 3.3 23 19-41 32-54 (362)
480 1l8q_A Chromosomal replication 96.8 0.00063 2.2E-08 48.3 2.8 22 22-43 39-60 (324)
481 2qby_B CDC6 homolog 3, cell di 96.8 0.0016 5.6E-08 46.7 4.9 24 20-43 45-68 (384)
482 3q5d_A Atlastin-1; G protein, 96.8 0.0054 1.8E-07 46.3 7.7 22 21-42 68-89 (447)
483 2r6a_A DNAB helicase, replicat 96.8 0.0009 3.1E-08 50.1 3.4 33 11-43 193-226 (454)
484 2ocp_A DGK, deoxyguanosine kin 96.8 0.0011 3.8E-08 45.2 3.6 21 22-42 4-24 (241)
485 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.0011 3.7E-08 45.3 3.5 21 22-42 41-61 (262)
486 4ag6_A VIRB4 ATPase, type IV s 96.7 0.00093 3.2E-08 48.9 3.1 24 20-43 35-58 (392)
487 2chg_A Replication factor C sm 96.7 0.001 3.5E-08 43.6 3.0 21 22-42 40-60 (226)
488 1sxj_D Activator 1 41 kDa subu 96.7 0.0019 6.6E-08 45.8 4.6 21 23-43 61-81 (353)
489 2xtz_A Guanine nucleotide-bind 96.7 0.0011 3.7E-08 48.5 3.3 25 17-41 6-30 (354)
490 2zr9_A Protein RECA, recombina 96.7 0.00091 3.1E-08 48.8 2.8 25 17-41 57-82 (349)
491 3kl4_A SRP54, signal recogniti 96.7 0.0012 4.1E-08 49.6 3.4 21 21-41 97-118 (433)
492 3syl_A Protein CBBX; photosynt 96.6 0.0019 6.5E-08 45.2 4.2 21 22-42 69-89 (309)
493 3d3q_A TRNA delta(2)-isopenten 96.6 0.0011 3.8E-08 48.4 3.0 21 22-42 9-29 (340)
494 3n70_A Transport activator; si 96.6 0.0013 4.3E-08 41.7 3.0 24 20-43 24-47 (145)
495 1p5z_B DCK, deoxycytidine kina 96.6 0.00078 2.7E-08 46.6 2.0 22 22-43 26-47 (263)
496 3crm_A TRNA delta(2)-isopenten 96.6 0.0012 4.2E-08 47.8 3.1 22 22-43 7-28 (323)
497 4edh_A DTMP kinase, thymidylat 96.6 0.0015 5.2E-08 44.4 3.4 22 21-42 6-28 (213)
498 2z4s_A Chromosomal replication 96.6 0.0011 3.6E-08 49.6 2.8 23 21-43 131-153 (440)
499 3ice_A Transcription terminati 96.6 0.0011 3.7E-08 49.7 2.7 30 14-43 167-197 (422)
500 1d2n_A N-ethylmaleimide-sensit 96.6 0.0015 5.1E-08 45.2 3.3 24 20-43 64-87 (272)
No 1
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.84 E-value=6.3e-21 Score=128.86 Aligned_cols=99 Identities=55% Similarity=0.841 Sum_probs=81.1
Q ss_pred HHHHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhh
Q 033893 7 FYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYA 86 (109)
Q Consensus 7 ~~~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~ 86 (109)
+..+++++++..++.+|+++|++|||||||++++.+.++..+.||.++..+.+.+++..+.+||++|+++++.+|+.|++
T Consensus 12 ~~~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 91 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLP 91 (198)
T ss_dssp -CHHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGG
T ss_pred HHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHh
Confidence 55788999999999999999999999999999999888877889988888999999999999999999999999999999
Q ss_pred cCCEEEEEEeCCCcccccc
Q 033893 87 KVIGSFKTKKIEFRDFYEV 105 (109)
Q Consensus 87 ~~~~~v~~~~~~~~~~~~~ 105 (109)
++++++.++|.+...+++.
T Consensus 92 ~~d~~i~v~D~~~~~s~~~ 110 (198)
T 1f6b_A 92 AINGIVFLVDCADHERLLE 110 (198)
T ss_dssp GCSEEEEEEETTCGGGHHH
T ss_pred cCCEEEEEEECCCHHHHHH
Confidence 9999999999987765543
No 2
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.83 E-value=1.9e-20 Score=125.67 Aligned_cols=103 Identities=60% Similarity=1.023 Sum_probs=79.1
Q ss_pred hHHHHHHHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHH
Q 033893 3 LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWK 82 (109)
Q Consensus 3 ~~~~~~~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~ 82 (109)
|+..+..+++++++..++.+|+++|++|+|||||++++.+.++..+.||.++..+++.+++..+.+||++|+++++.+|+
T Consensus 6 ~~~~~~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 85 (190)
T 1m2o_B 6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK 85 (190)
T ss_dssp ------------------CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGG
T ss_pred HHHHHHHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 45567788899999999999999999999999999999988888888999988899999999999999999999999999
Q ss_pred hhhhcCCEEEEEEeCCCcccccc
Q 033893 83 DYYAKVIGSFKTKKIEFRDFYEV 105 (109)
Q Consensus 83 ~~~~~~~~~v~~~~~~~~~~~~~ 105 (109)
.|++++++++.++|.+...+++.
T Consensus 86 ~~~~~~d~~i~v~d~~~~~s~~~ 108 (190)
T 1m2o_B 86 DYFPEVNGIVFLVDAADPERFDE 108 (190)
T ss_dssp GGCTTCCEEEEEEETTCGGGHHH
T ss_pred HHHhcCCEEEEEEECCChHHHHH
Confidence 99999999999999988766554
No 3
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=7.4e-18 Score=112.05 Aligned_cols=90 Identities=31% Similarity=0.516 Sum_probs=76.8
Q ss_pred CcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 16 ~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
+..+..+|+++|.+|+|||||++.+.+.++..+.||.++....+.+++..+.+||++|+++++.+|..|++++++++.++
T Consensus 12 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 91 (187)
T 1zj6_A 12 FNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV 91 (187)
T ss_dssp HTTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 45667889999999999999999999887777788888888899999999999999999999999999999999999999
Q ss_pred eCCCcccccc
Q 033893 96 KIEFRDFYEV 105 (109)
Q Consensus 96 ~~~~~~~~~~ 105 (109)
|.+...+++.
T Consensus 92 d~~~~~s~~~ 101 (187)
T 1zj6_A 92 DSTDRERISV 101 (187)
T ss_dssp ETTCTTTHHH
T ss_pred eCCCHHHHHH
Confidence 9987665544
No 4
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.72 E-value=1.9e-17 Score=109.67 Aligned_cols=95 Identities=29% Similarity=0.466 Sum_probs=78.3
Q ss_pred HHHhcCCc-ccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcC
Q 033893 10 ILASLGLW-QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKV 88 (109)
Q Consensus 10 ~l~~v~~~-~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~ 88 (109)
+++.+ +. .+..+|+++|++|+|||||++.+.+.+...+.||.++....+.+++..+.+||++|+++++..+..|++++
T Consensus 8 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 86 (186)
T 1ksh_A 8 ILKKM-KQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86 (186)
T ss_dssp ----------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTC
T ss_pred HHHhh-cccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCC
Confidence 34444 33 56678999999999999999999987766788888888888999999999999999999999999999999
Q ss_pred CEEEEEEeCCCcccccc
Q 033893 89 IGSFKTKKIEFRDFYEV 105 (109)
Q Consensus 89 ~~~v~~~~~~~~~~~~~ 105 (109)
++++.+++.+...+++.
T Consensus 87 d~ii~v~d~~~~~s~~~ 103 (186)
T 1ksh_A 87 DGLIWVVDSADRQRMQD 103 (186)
T ss_dssp SEEEEEEETTCGGGHHH
T ss_pred CEEEEEEECcCHHHHHH
Confidence 99999999987766544
No 5
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.71 E-value=3e-17 Score=109.07 Aligned_cols=88 Identities=33% Similarity=0.513 Sum_probs=78.4
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI 97 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~ 97 (109)
.+..+|+++|++|+|||||++++.+.++....||.++....+.+++..+.+||++|+++++..|..|++++++++.++|.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS 93 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence 45678999999999999999999988777778888877788899999999999999999999999999999999999999
Q ss_pred CCcccccc
Q 033893 98 EFRDFYEV 105 (109)
Q Consensus 98 ~~~~~~~~ 105 (109)
+...+++.
T Consensus 94 ~~~~s~~~ 101 (181)
T 1fzq_A 94 ADRKRFEE 101 (181)
T ss_dssp TCGGGHHH
T ss_pred cCHHHHHH
Confidence 87665543
No 6
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=2.2e-17 Score=108.82 Aligned_cols=97 Identities=35% Similarity=0.505 Sum_probs=79.7
Q ss_pred HHHHHHhcCCc-ccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhh
Q 033893 7 FYGILASLGLW-QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYY 85 (109)
Q Consensus 7 ~~~~l~~v~~~-~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~ 85 (109)
+.++++.+ |. .++.+|+++|++|||||||++.+.+.++....||.++....+.+++..+.+||++|+++++..|..|+
T Consensus 5 ~~~~~~~~-~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 83 (183)
T 1moz_A 5 FSSMFDKL-WGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYY 83 (183)
T ss_dssp HHHHHGGG-TTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTT
T ss_pred HHHHHHHh-cCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHh
Confidence 33455555 45 56778999999999999999999988777788888888889999999999999999999999999999
Q ss_pred hcCCEEEEEEeCCCccccc
Q 033893 86 AKVIGSFKTKKIEFRDFYE 104 (109)
Q Consensus 86 ~~~~~~v~~~~~~~~~~~~ 104 (109)
+++++++.++|.+...+++
T Consensus 84 ~~~d~ii~v~d~~~~~s~~ 102 (183)
T 1moz_A 84 ADTAAVIFVVDSTDKDRMS 102 (183)
T ss_dssp TTEEEEEEEEETTCTTTHH
T ss_pred ccCCEEEEEEECCCHHHHH
Confidence 9999999999987665544
No 7
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.71 E-value=1.2e-17 Score=111.01 Aligned_cols=87 Identities=32% Similarity=0.494 Sum_probs=78.4
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI 97 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~ 97 (109)
.++.+|+++|++|+|||||++.+.+.++.+..||.++...++.+++..+.+||++|+++++..++.|++++++++.++|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 99 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDS 99 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeC
Confidence 56778999999999999999999988777788888888888999999999999999999999999999999999999999
Q ss_pred CCccccc
Q 033893 98 EFRDFYE 104 (109)
Q Consensus 98 ~~~~~~~ 104 (109)
+...+++
T Consensus 100 ~~~~s~~ 106 (189)
T 2x77_A 100 TDRDRMG 106 (189)
T ss_dssp TCCTTHH
T ss_pred CCHHHHH
Confidence 7765544
No 8
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.70 E-value=5.1e-17 Score=109.00 Aligned_cols=94 Identities=30% Similarity=0.485 Sum_probs=76.6
Q ss_pred HHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCE
Q 033893 11 LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIG 90 (109)
Q Consensus 11 l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~ 90 (109)
++.+ +..+..+|+++|++|+|||||++.+.+.++.+..||.++....+..++..+.+||++|+++++.+|+.|++++++
T Consensus 21 ~~~~-~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (192)
T 2b6h_A 21 FSRI-FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQG 99 (192)
T ss_dssp GGGT-TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCE
T ss_pred HHHh-ccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 3444 455667899999999999999999998888777888888788888899999999999999999999999999999
Q ss_pred EEEEEeCCCcccccc
Q 033893 91 SFKTKKIEFRDFYEV 105 (109)
Q Consensus 91 ~v~~~~~~~~~~~~~ 105 (109)
++.++|.+...+++.
T Consensus 100 iilv~D~~~~~s~~~ 114 (192)
T 2b6h_A 100 LIFVVDSNDRERVQE 114 (192)
T ss_dssp EEEEEETTCGGGHHH
T ss_pred EEEEEECCCHHHHHH
Confidence 999999987765543
No 9
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.70 E-value=5.2e-17 Score=105.17 Aligned_cols=84 Identities=32% Similarity=0.514 Sum_probs=75.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD 101 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~ 101 (109)
+|+++|++|+|||||++.+.+..+.+..||.++....+..++..+.+||++|+++++.+|+.|++++++++.+++.+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 81 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 81 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGG
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999877877889988888888888899999999999999999999999999999999998776
Q ss_pred cccc
Q 033893 102 FYEV 105 (109)
Q Consensus 102 ~~~~ 105 (109)
+++.
T Consensus 82 s~~~ 85 (164)
T 1r8s_A 82 RVNE 85 (164)
T ss_dssp GHHH
T ss_pred HHHH
Confidence 5543
No 10
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.69 E-value=5.2e-17 Score=112.05 Aligned_cols=92 Identities=18% Similarity=0.299 Sum_probs=69.9
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEE
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSF 92 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v 92 (109)
.++.+|+|+|.+|+|||||++.+....| .++.||++.+. -.+..++ +.+.+||++|+++++.+++.||+++++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 4567899999999999999999998877 56789887543 3455555 67889999999999999999999999999
Q ss_pred EEEeCCCccccccccCC
Q 033893 93 KTKKIEFRDFYEVEIFW 109 (109)
Q Consensus 93 ~~~~~~~~~~~~~~~~w 109 (109)
++++++...+++....|
T Consensus 91 lv~di~~~~Sf~~i~~~ 107 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKW 107 (216)
T ss_dssp EEEETTCHHHHHTHHHH
T ss_pred EEeecchhHHHHHHHHH
Confidence 99999999888776554
No 11
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.69 E-value=1.1e-16 Score=104.18 Aligned_cols=87 Identities=34% Similarity=0.507 Sum_probs=77.8
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE 98 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~ 98 (109)
+..+|+++|++|+|||||++.+.+..+.+..||.++....+.+++..+.+||++|+++++..|..|++++++++.+++.+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 85 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC 85 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECC
Confidence 45679999999999999999999888878888888888889999999999999999999999999999999999999987
Q ss_pred Ccccccc
Q 033893 99 FRDFYEV 105 (109)
Q Consensus 99 ~~~~~~~ 105 (109)
...+++.
T Consensus 86 ~~~s~~~ 92 (171)
T 1upt_A 86 DRDRIGI 92 (171)
T ss_dssp CCTTHHH
T ss_pred CHHHHHH
Confidence 7655543
No 12
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.68 E-value=1.3e-16 Score=105.62 Aligned_cols=88 Identities=32% Similarity=0.530 Sum_probs=77.8
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeC
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKI 97 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~ 97 (109)
.+..+|+++|.+|+|||||++.+.+.++....||.++....+.+++..+.+||++|+++++.++..|++++++++.++|.
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~ 98 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDS 98 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEET
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 34567999999999999999999998887788888888889999999999999999999999999999999999999999
Q ss_pred CCcccccc
Q 033893 98 EFRDFYEV 105 (109)
Q Consensus 98 ~~~~~~~~ 105 (109)
+...+++.
T Consensus 99 ~~~~s~~~ 106 (181)
T 2h17_A 99 TDRERISV 106 (181)
T ss_dssp TCTTTHHH
T ss_pred CCHHHHHH
Confidence 87655543
No 13
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.66 E-value=3.1e-16 Score=104.51 Aligned_cols=88 Identities=25% Similarity=0.419 Sum_probs=76.5
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCccc--ccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLV--QHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~--~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
...+|+++|.+|+|||||++.+.+.++. .+.||.++....+...+..+.+||++|+++++.++..|++++++++.++|
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 95 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVD 95 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3457899999999999999999998874 45889888888888888999999999999999999999999999999999
Q ss_pred CCCccccccc
Q 033893 97 IEFRDFYEVE 106 (109)
Q Consensus 97 ~~~~~~~~~~ 106 (109)
.+...+++..
T Consensus 96 ~~~~~s~~~~ 105 (199)
T 4bas_A 96 SSDHLRLCVV 105 (199)
T ss_dssp TTCGGGHHHH
T ss_pred CCcHHHHHHH
Confidence 9887765543
No 14
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.65 E-value=6.6e-16 Score=102.87 Aligned_cols=88 Identities=22% Similarity=0.411 Sum_probs=77.0
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
.+..+|+++|..|+|||||++.+.+.++. ...||.+.+...+..++..+.+||++|+++++..|..|++++++++.++|
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 99 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVD 99 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEE
Confidence 34567899999999999999999988774 67888888777888889999999999999999999999999999999999
Q ss_pred CCCcccccc
Q 033893 97 IEFRDFYEV 105 (109)
Q Consensus 97 ~~~~~~~~~ 105 (109)
.+...+++.
T Consensus 100 ~~~~~s~~~ 108 (188)
T 1zd9_A 100 AADQEKIEA 108 (188)
T ss_dssp TTCGGGHHH
T ss_pred CCCHHHHHH
Confidence 987665543
No 15
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.64 E-value=4.2e-16 Score=103.73 Aligned_cols=88 Identities=31% Similarity=0.440 Sum_probs=76.2
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcCc-c-cccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDER-L-VQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~~-~-~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
.+..+|+++|.+|+|||||++.+.+.. + ....||.++....+.+++..+.+||++|+++++.+|..|++++++++.++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 98 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVI 98 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 455689999999999999999999876 3 56778888888889999999999999999999999999999999999999
Q ss_pred eCCCcccccc
Q 033893 96 KIEFRDFYEV 105 (109)
Q Consensus 96 ~~~~~~~~~~ 105 (109)
|.+...+++.
T Consensus 99 d~~~~~s~~~ 108 (190)
T 2h57_A 99 DSSDRLRMVV 108 (190)
T ss_dssp ETTCHHHHHH
T ss_pred ECCCHHHHHH
Confidence 9887655543
No 16
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.62 E-value=6.3e-16 Score=101.24 Aligned_cols=88 Identities=22% Similarity=0.320 Sum_probs=73.7
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCccc--CceEEEEECC---EEEEEEEcCCcccccccHHhhhhcCCEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQH--PTSEELSIGK---IKFKAFDLGGHQIARRVWKDYYAKVIGSF 92 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~--~~~g~i~~~~---~~i~~~d~~g~~~~r~~~~~~~~~~~~~v 92 (109)
+..+|+++|++|+|||||++.+.+..+. +..||.+ +....+.+++ ..+.+||++|+++++.++..|++++++++
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 84 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVL 84 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEE
Confidence 4567899999999999999999987763 4567766 3456777776 78999999999999999999999999999
Q ss_pred EEEeCCCccccccc
Q 033893 93 KTKKIEFRDFYEVE 106 (109)
Q Consensus 93 ~~~~~~~~~~~~~~ 106 (109)
.++|.+...+++..
T Consensus 85 ~v~d~~~~~s~~~~ 98 (178)
T 2hxs_A 85 LVYDITNYQSFENL 98 (178)
T ss_dssp EEEETTCHHHHHTH
T ss_pred EEEECCCHHHHHHH
Confidence 99999877665543
No 17
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.61 E-value=1.8e-15 Score=101.64 Aligned_cols=85 Identities=21% Similarity=0.366 Sum_probs=68.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECCE--EEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGKI--KFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~~--~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
..+++++|++|||||||++++.+..+ ....|+.+ +..+++.+++. .+.+||.+|+++++.++..|++++++++.+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 84 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV 84 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEE
Confidence 35789999999999999999999876 34556654 45688999885 566899999999999999999999999999
Q ss_pred EeCCCccccc
Q 033893 95 KKIEFRDFYE 104 (109)
Q Consensus 95 ~~~~~~~~~~ 104 (109)
++++...+++
T Consensus 85 ~d~~~~~s~~ 94 (199)
T 2f9l_A 85 YDIAKHLTYE 94 (199)
T ss_dssp EETTCHHHHH
T ss_pred EECcCHHHHH
Confidence 9987655443
No 18
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.61 E-value=2e-15 Score=101.21 Aligned_cols=84 Identities=19% Similarity=0.349 Sum_probs=69.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECCEEE--EEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGKIKF--KAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~~~i--~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
.+++|+|++|||||||++++.+..+ ....||.+ +..+++.+++..+ .+||.+|+++++.++..+++++++++.++
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 109 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVY 109 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEE
Confidence 4679999999999999999999876 45666665 4578999998654 46999999999999999999999999999
Q ss_pred eCCCccccc
Q 033893 96 KIEFRDFYE 104 (109)
Q Consensus 96 ~~~~~~~~~ 104 (109)
+.+...+++
T Consensus 110 d~~~~~s~~ 118 (191)
T 1oix_A 110 DIAKHLTYE 118 (191)
T ss_dssp ETTCHHHHH
T ss_pred ECcCHHHHH
Confidence 987655443
No 19
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.58 E-value=8.9e-15 Score=94.61 Aligned_cols=87 Identities=16% Similarity=0.340 Sum_probs=71.4
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
++.+|+++|++|||||||++.+.+..+ ....|+.+. ....+.+++ ..+.+||.+|+++++..+..|++++++++.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 356799999999999999999998876 456676653 345666665 578899999999999999999999999999
Q ss_pred EEeCCCcccccc
Q 033893 94 TKKIEFRDFYEV 105 (109)
Q Consensus 94 ~~~~~~~~~~~~ 105 (109)
+++.+...+++.
T Consensus 82 v~d~~~~~s~~~ 93 (170)
T 1ek0_A 82 VYDVTKPQSFIK 93 (170)
T ss_dssp EEETTCHHHHHH
T ss_pred EEecCChHHHHH
Confidence 999887665543
No 20
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.58 E-value=4.8e-15 Score=99.95 Aligned_cols=86 Identities=22% Similarity=0.339 Sum_probs=66.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
.+|+++|.+|+|||||++.+.+..+ ....||.+. ....+.+++ ..+.+||++|+++++.+|..|++++++++.++
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~ 109 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAY 109 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEE
Confidence 4689999999999999999998876 456677653 346677777 68889999999999999999999999999999
Q ss_pred eCCCccccccc
Q 033893 96 KIEFRDFYEVE 106 (109)
Q Consensus 96 ~~~~~~~~~~~ 106 (109)
|.+...+++..
T Consensus 110 D~~~~~s~~~~ 120 (201)
T 2hup_A 110 DITKRSSFLSV 120 (201)
T ss_dssp ETTBHHHHHTH
T ss_pred ECCCHHHHHHH
Confidence 99877665543
No 21
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.57 E-value=7.8e-15 Score=97.82 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=71.9
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
.+..+|+++|.+|+|||||++.+.+..+ ....||.+... ..+.+++ ..+.+||++|+++++.++..|+++++++++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 100 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLL 100 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEE
Confidence 3456789999999999999999998876 45667766443 3455666 456899999999999999999999999999
Q ss_pred EEeCCCcccccc
Q 033893 94 TKKIEFRDFYEV 105 (109)
Q Consensus 94 ~~~~~~~~~~~~ 105 (109)
+++.+...+++.
T Consensus 101 v~d~~~~~s~~~ 112 (194)
T 3reg_A 101 CFAVNNRTSFDN 112 (194)
T ss_dssp EEETTCHHHHHH
T ss_pred EEECCCHHHHHH
Confidence 999988776654
No 22
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.57 E-value=6.3e-15 Score=111.55 Aligned_cols=87 Identities=37% Similarity=0.552 Sum_probs=78.9
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE 98 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~ 98 (109)
+..+|+|+|.+|+|||||++.+.+.++....||.++..+.+.++++.+.+||++|++.++.+|..|++++++++.++|.+
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~ 400 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCA 400 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETT
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECc
Confidence 34578999999999999999999988888889999999999999999999999999999999999999999999999998
Q ss_pred Ccccccc
Q 033893 99 FRDFYEV 105 (109)
Q Consensus 99 ~~~~~~~ 105 (109)
...+++.
T Consensus 401 ~~~s~~~ 407 (497)
T 3lvq_E 401 DRDRIDE 407 (497)
T ss_dssp CGGGHHH
T ss_pred chhHHHH
Confidence 7765543
No 23
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.57 E-value=1.4e-14 Score=96.26 Aligned_cols=87 Identities=20% Similarity=0.284 Sum_probs=72.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
..+|+++|++|+|||||++++.+..+ ....|+.+ +....+.+++ +.+.+||++|+++++.++..|++++++++.+
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 95 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 95 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEE
Confidence 35789999999999999999998776 45566665 3446677777 6788999999999999999999999999999
Q ss_pred EeCCCccccccc
Q 033893 95 KKIEFRDFYEVE 106 (109)
Q Consensus 95 ~~~~~~~~~~~~ 106 (109)
++.+...+++..
T Consensus 96 ~d~~~~~s~~~~ 107 (196)
T 3tkl_A 96 YDVTDQESFNNV 107 (196)
T ss_dssp EETTCHHHHHTH
T ss_pred EECcCHHHHHHH
Confidence 999877665543
No 24
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.56 E-value=8.7e-15 Score=95.68 Aligned_cols=87 Identities=20% Similarity=0.279 Sum_probs=71.3
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
+..+|+++|++|+|||||++.+.+..+ ....|+.+ +....+.+++ ..+.+||++|+++++..+..|++++++++.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 87 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIV 87 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEE
Confidence 345789999999999999999998876 45566665 3446677787 678899999999999999999999999999
Q ss_pred EEeCCCcccccc
Q 033893 94 TKKIEFRDFYEV 105 (109)
Q Consensus 94 ~~~~~~~~~~~~ 105 (109)
+++.+...+++.
T Consensus 88 v~d~~~~~s~~~ 99 (181)
T 3tw8_B 88 VYDVTSAESFVN 99 (181)
T ss_dssp EEETTCHHHHHH
T ss_pred EEECCCHHHHHH
Confidence 999987766554
No 25
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=1.2e-14 Score=98.39 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=71.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
..+|+++|.+|+|||||++.+.+..+ ....||.+. ....+.+++ ..+.+||++|+++++.++..|++++++++.+
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 105 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT 105 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 35789999999999999999998776 456677653 345677777 5788999999999999999999999999999
Q ss_pred EeCCCccccccc
Q 033893 95 KKIEFRDFYEVE 106 (109)
Q Consensus 95 ~~~~~~~~~~~~ 106 (109)
+|.+...+++..
T Consensus 106 ~D~~~~~s~~~~ 117 (201)
T 2ew1_A 106 YDITCEESFRCL 117 (201)
T ss_dssp EETTCHHHHHTH
T ss_pred EECCCHHHHHHH
Confidence 999877665543
No 26
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.56 E-value=1.2e-14 Score=95.89 Aligned_cols=86 Identities=26% Similarity=0.429 Sum_probs=71.3
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
..+|+++|++|+|||||++.+.+..+ ....|+.+ +....+.+++ ..+.+||++|+++++..+..|++++++++.+
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 89 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 89 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEE
Confidence 45789999999999999999998776 45566665 3345667777 6888999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++.+...+++.
T Consensus 90 ~d~~~~~s~~~ 100 (186)
T 2bme_A 90 YDITSRETYNA 100 (186)
T ss_dssp EETTCHHHHHT
T ss_pred EECcCHHHHHH
Confidence 99987766544
No 27
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.56 E-value=2.1e-14 Score=93.66 Aligned_cols=87 Identities=18% Similarity=0.290 Sum_probs=71.3
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
++.+|+++|+.|+|||||++.+.+..+ ....|+.+ +....+.+++ ..+.+||++|+++++..+..|++++++++.
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 456789999999999999999998766 45566665 3345666776 578899999999999999999999999999
Q ss_pred EEeCCCcccccc
Q 033893 94 TKKIEFRDFYEV 105 (109)
Q Consensus 94 ~~~~~~~~~~~~ 105 (109)
+++.+...+++.
T Consensus 93 v~d~~~~~s~~~ 104 (179)
T 2y8e_A 93 VYDITNTNSFHQ 104 (179)
T ss_dssp EEETTCHHHHHT
T ss_pred EEECCCHHHHHH
Confidence 999877655544
No 28
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.55 E-value=1.6e-14 Score=94.33 Aligned_cols=87 Identities=16% Similarity=0.274 Sum_probs=69.2
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
+..+|+++|++|||||||++.+.+..+ ....|+.+.+ ...+.+++ ..+.+||++|+++++..+..|++++++++.
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 85 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 85 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEE
Confidence 345789999999999999999998776 4566766643 45666777 588899999999999999999999999999
Q ss_pred EEeCCCcccccc
Q 033893 94 TKKIEFRDFYEV 105 (109)
Q Consensus 94 ~~~~~~~~~~~~ 105 (109)
+++.+...+++.
T Consensus 86 v~d~~~~~s~~~ 97 (177)
T 1wms_A 86 TFSVDDSQSFQN 97 (177)
T ss_dssp EEETTCHHHHHT
T ss_pred EEECcCHHHHHH
Confidence 999987765543
No 29
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.55 E-value=1e-14 Score=99.39 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=70.3
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
+..+|+++|.+|+|||||++.+.+..+ ..+.||.+... ..+.+++ +.+.+||++|+++++.+++.|++++++++++
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 105 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 105 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEE
Confidence 345789999999999999999998876 45677776443 2334443 6888999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
+|++...+++.
T Consensus 106 ~d~~~~~s~~~ 116 (214)
T 3q3j_B 106 FDISRPETVDS 116 (214)
T ss_dssp EETTCTHHHHH
T ss_pred EECcCHHHHHH
Confidence 99988777665
No 30
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=2e-14 Score=94.18 Aligned_cols=90 Identities=20% Similarity=0.321 Sum_probs=65.1
Q ss_pred CcccccEEEEEeCCCCcHHHHHHHHhcCccc--ccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCC
Q 033893 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERLV--QHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVI 89 (109)
Q Consensus 16 ~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~--~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~ 89 (109)
+..+..+|+++|++|+|||||++.+.+.++. ...|+.+.+. ..+.+++ ..+.+||++|+++++..+..|+++++
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 3445568999999999999999999988763 5667766543 3445666 47889999999999999999999999
Q ss_pred EEEEEEeCCCcccccc
Q 033893 90 GSFKTKKIEFRDFYEV 105 (109)
Q Consensus 90 ~~v~~~~~~~~~~~~~ 105 (109)
+++.+++.+...+++.
T Consensus 86 ~ii~v~d~~~~~s~~~ 101 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDN 101 (180)
T ss_dssp EEEEEEETTCHHHHHT
T ss_pred EEEEEEECCCHHHHHH
Confidence 9999999987665544
No 31
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.55 E-value=1.5e-14 Score=95.05 Aligned_cols=87 Identities=20% Similarity=0.274 Sum_probs=71.4
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
+..+|+++|.+|+|||||++.+.+..+ ....||.+.. ...+.+++ ..+.+||++|+++++.++..|++++++++++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v 84 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV 84 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEE
Confidence 456789999999999999999997665 4566766533 45566777 5678999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++.+...+++.
T Consensus 85 ~d~~~~~s~~~ 95 (181)
T 3t5g_A 85 YSVTSIKSFEV 95 (181)
T ss_dssp EETTCHHHHHH
T ss_pred EECCCHHHHHH
Confidence 99987766554
No 32
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.55 E-value=2.1e-14 Score=95.38 Aligned_cols=87 Identities=22% Similarity=0.283 Sum_probs=71.4
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCccccc-ccHHhhhhcCCEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIAR-RVWKDYYAKVIGSF 92 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r-~~~~~~~~~~~~~v 92 (109)
+..+|+++|.+|+|||||++.+.+..+ ....|+.+.+ ...+.+++ ..+.+||++|+++++ .++..|++++++++
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ii 98 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 98 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEE
Confidence 445789999999999999999998776 4566766643 45666776 688899999999988 89999999999999
Q ss_pred EEEeCCCcccccc
Q 033893 93 KTKKIEFRDFYEV 105 (109)
Q Consensus 93 ~~~~~~~~~~~~~ 105 (109)
.+++.+...+++.
T Consensus 99 lv~D~~~~~s~~~ 111 (189)
T 1z06_A 99 FVYDMTNMASFHS 111 (189)
T ss_dssp EEEETTCHHHHHT
T ss_pred EEEECcCHHHHHH
Confidence 9999987655544
No 33
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.55 E-value=1.9e-14 Score=93.07 Aligned_cols=87 Identities=16% Similarity=0.296 Sum_probs=70.2
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
++.+|+++|++|+|||||++.+.+..+. ...|+.+.+ ...+.+++ ..+.+||++|+++++..+..+++++++++.
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence 4567899999999999999999987663 455665533 34555654 678899999999999999999999999999
Q ss_pred EEeCCCcccccc
Q 033893 94 TKKIEFRDFYEV 105 (109)
Q Consensus 94 ~~~~~~~~~~~~ 105 (109)
+++.+...+++.
T Consensus 85 v~d~~~~~s~~~ 96 (170)
T 1r2q_A 85 VYDITNEESFAR 96 (170)
T ss_dssp EEETTCHHHHHH
T ss_pred EEECCCHHHHHH
Confidence 999987665544
No 34
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.55 E-value=1.5e-14 Score=95.44 Aligned_cols=86 Identities=17% Similarity=0.220 Sum_probs=70.3
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceE---EEEEC-----------CEEEEEEEcCCcccccccHHhh
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSE---ELSIG-----------KIKFKAFDLGGHQIARRVWKDY 84 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g---~i~~~-----------~~~i~~~d~~g~~~~r~~~~~~ 84 (109)
..+|+++|++|+|||||++.+.+..+ ....||.+.+.. .+.++ ...+.+||++|+++++..+..|
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 90 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAF 90 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHH
Confidence 45789999999999999999998776 456677765433 44555 3588999999999999999999
Q ss_pred hhcCCEEEEEEeCCCcccccc
Q 033893 85 YAKVIGSFKTKKIEFRDFYEV 105 (109)
Q Consensus 85 ~~~~~~~v~~~~~~~~~~~~~ 105 (109)
++++++++.+++.+...+++.
T Consensus 91 ~~~~d~~i~v~d~~~~~s~~~ 111 (195)
T 3bc1_A 91 FRDAMGFLLLFDLTNEQSFLN 111 (195)
T ss_dssp TTTCSEEEEEEETTCHHHHHT
T ss_pred HcCCCEEEEEEECCCHHHHHH
Confidence 999999999999877665544
No 35
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.54 E-value=1.9e-14 Score=92.95 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=69.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEEC--CEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~--~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
+.+|+++|.+|+|||||++.+.+..+ ....||.+... ..+.++ ...+.+||++|+++++.++..|++++++++.++
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 82 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVY 82 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEE
Confidence 46799999999999999999998766 45566665332 234444 367889999999999999999999999999999
Q ss_pred eCCCcccccc
Q 033893 96 KIEFRDFYEV 105 (109)
Q Consensus 96 ~~~~~~~~~~ 105 (109)
+.+...+++.
T Consensus 83 d~~~~~s~~~ 92 (167)
T 1c1y_A 83 SITAQSTFND 92 (167)
T ss_dssp ETTCHHHHHT
T ss_pred ECCCHHHHHH
Confidence 9987665544
No 36
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.54 E-value=2e-14 Score=92.96 Aligned_cols=87 Identities=14% Similarity=0.247 Sum_probs=71.2
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
+..+|+++|++|||||||++.+.+..+ ....|+.+.+ ...+.+++ ..+.+||.+|+++++.++..|++++++++.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 345789999999999999999998776 4566776543 45566665 578899999999999999999999999999
Q ss_pred EEeCCCcccccc
Q 033893 94 TKKIEFRDFYEV 105 (109)
Q Consensus 94 ~~~~~~~~~~~~ 105 (109)
+++.+...+++.
T Consensus 84 v~d~~~~~s~~~ 95 (168)
T 1z2a_A 84 VFSTTDRESFEA 95 (168)
T ss_dssp EEETTCHHHHHT
T ss_pred EEECcCHHHHHH
Confidence 999987665544
No 37
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.54 E-value=1.2e-14 Score=94.28 Aligned_cols=87 Identities=22% Similarity=0.329 Sum_probs=64.7
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce--EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS--EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~--g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
+..+|+++|++|+|||||++.+.+..+ ....|+.+.+. ..+.+++ ..+.+||++|+++++.++..|++++++++.
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 84 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEE
Confidence 345789999999999999999998876 45667776543 4566665 578899999999999999999999999999
Q ss_pred EEeCCCcccccc
Q 033893 94 TKKIEFRDFYEV 105 (109)
Q Consensus 94 ~~~~~~~~~~~~ 105 (109)
+++.+...+++.
T Consensus 85 v~d~~~~~s~~~ 96 (170)
T 1z08_A 85 VYDITDEDSFQK 96 (170)
T ss_dssp EEETTCHHHHHH
T ss_pred EEECcCHHHHHH
Confidence 999887665544
No 38
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=96.48 Aligned_cols=86 Identities=16% Similarity=0.327 Sum_probs=67.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
.+|+++|.+|+|||||++.+.+..+ ....|+.+ +....+.+++ ..+.+||++|+++++.++..|++++++++.++
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~ 106 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 106 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 4689999999999999999998876 45566665 3345667776 57889999999999999999999999999999
Q ss_pred eCCCccccccc
Q 033893 96 KIEFRDFYEVE 106 (109)
Q Consensus 96 ~~~~~~~~~~~ 106 (109)
|.+...+++..
T Consensus 107 D~~~~~s~~~~ 117 (192)
T 2il1_A 107 DITKKETFDDL 117 (192)
T ss_dssp ETTCHHHHHTH
T ss_pred ECcCHHHHHHH
Confidence 99877665543
No 39
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.54 E-value=2.9e-14 Score=94.44 Aligned_cols=87 Identities=23% Similarity=0.352 Sum_probs=71.2
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
+..+|+++|++|+|||||++.+.+..+ ....|+.+. ....+.+++ ..+.+||++|+++++.++..|++++++++.
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 346789999999999999999998876 456676653 345566665 678899999999999999999999999999
Q ss_pred EEeCCCcccccc
Q 033893 94 TKKIEFRDFYEV 105 (109)
Q Consensus 94 ~~~~~~~~~~~~ 105 (109)
+++.+...+++.
T Consensus 94 v~d~~~~~s~~~ 105 (195)
T 1x3s_A 94 VYDVTRRDTFVK 105 (195)
T ss_dssp EEETTCHHHHHT
T ss_pred EEECcCHHHHHH
Confidence 999877665543
No 40
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.54 E-value=2e-14 Score=95.68 Aligned_cols=87 Identities=16% Similarity=0.145 Sum_probs=71.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
..+|+++|.+|+|||||++.+.+..+ ....||.+... ..+.+++ ..+.+||++|+++++.++..|++++++++.++
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 97 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 97 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEE
Confidence 35789999999999999999998776 45667765433 4566666 78889999999999999999999999999999
Q ss_pred eCCCccccccc
Q 033893 96 KIEFRDFYEVE 106 (109)
Q Consensus 96 ~~~~~~~~~~~ 106 (109)
+.+...+++..
T Consensus 98 d~~~~~s~~~~ 108 (194)
T 2atx_A 98 SVVNPASFQNV 108 (194)
T ss_dssp ETTCHHHHHHH
T ss_pred ECCCHHHHHHH
Confidence 99877665543
No 41
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.54 E-value=2.3e-14 Score=94.96 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=70.8
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
+..+|+++|++|+|||||++.+.+..+ ..+.||.+... ..+.+++ ..+.+||++|+++++.+++.|++++++++.+
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 85 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 85 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEE
Confidence 456789999999999999999998776 45667765332 3455554 6788999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
+|.+...+++.
T Consensus 86 ~d~~~~~s~~~ 96 (184)
T 1m7b_A 86 FDISRPETLDS 96 (184)
T ss_dssp EETTCHHHHHH
T ss_pred EECCCHHHHHH
Confidence 99987766654
No 42
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.54 E-value=1.5e-14 Score=93.60 Aligned_cols=86 Identities=14% Similarity=0.112 Sum_probs=49.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
.-+|+++|++|+|||||++.+.+.......|+.+... ..+.+++ ..+.+||++|+++++.+++.|++++++++.+++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 3578999999999999999999876654445444322 3455665 567799999999999999999999999999999
Q ss_pred CCCcccccc
Q 033893 97 IEFRDFYEV 105 (109)
Q Consensus 97 ~~~~~~~~~ 105 (109)
++...+++.
T Consensus 82 ~~~~~s~~~ 90 (166)
T 3q72_A 82 VTDKGSFEK 90 (166)
T ss_dssp TTCHHHHHH
T ss_pred CCCHHHHHH
Confidence 987766654
No 43
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.54 E-value=5.5e-15 Score=98.18 Aligned_cols=86 Identities=15% Similarity=0.190 Sum_probs=62.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcC--cc-cccCCcccCceEEEEE-------CCEEEEEEEcCCcccccccHHhhhhcCC
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDE--RL-VQHQPTQHPTSEELSI-------GKIKFKAFDLGGHQIARRVWKDYYAKVI 89 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~--~~-~~~~pt~~~~~g~i~~-------~~~~i~~~d~~g~~~~r~~~~~~~~~~~ 89 (109)
+.+|+|+|++|||||||++++.+. .+ ..+.||.+.+.....+ ....+.+||++|+++++.+++.|+++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 357999999999999999999985 34 3467777655444332 2467889999999999999999999999
Q ss_pred EEEEEEeCCCc-ccccc
Q 033893 90 GSFKTKKIEFR-DFYEV 105 (109)
Q Consensus 90 ~~v~~~~~~~~-~~~~~ 105 (109)
+++.+++++.. .+++.
T Consensus 82 ~~i~v~d~~~~~~s~~~ 98 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDA 98 (184)
T ss_dssp EEEEEEEGGGCHHHHHT
T ss_pred EEEEEEeCCcchhHHHH
Confidence 99999998765 34443
No 44
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.54 E-value=3.6e-14 Score=92.71 Aligned_cols=87 Identities=16% Similarity=0.228 Sum_probs=70.7
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
+..+|+++|.+|+|||||++.+.+..+ ....||.+.. ...+.+++ ..+.+||++|+++++.++..|++++++++.+
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v 87 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLV 87 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEE
Confidence 446789999999999999999998766 4566666533 24566676 5778899999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++++...+++.
T Consensus 88 ~d~~~~~s~~~ 98 (181)
T 2fn4_A 88 FAINDRQSFNE 98 (181)
T ss_dssp EETTCHHHHHH
T ss_pred EeCCCHHHHHH
Confidence 99987665543
No 45
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.54 E-value=3.5e-14 Score=93.04 Aligned_cols=87 Identities=21% Similarity=0.340 Sum_probs=70.7
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
+..+|+++|++|+|||||++.+.+.++ ....|+.+.+ ...+.+++ ..+.+||++|+++++..+..+++++++++.
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 90 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEE
Confidence 445789999999999999999998876 3455666543 34566664 578899999999999999999999999999
Q ss_pred EEeCCCcccccc
Q 033893 94 TKKIEFRDFYEV 105 (109)
Q Consensus 94 ~~~~~~~~~~~~ 105 (109)
+++.+...+++.
T Consensus 91 v~d~~~~~s~~~ 102 (181)
T 2efe_B 91 VFDVTNQASFER 102 (181)
T ss_dssp EEETTCHHHHHH
T ss_pred EEECCCHHHHHH
Confidence 999877665543
No 46
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.54 E-value=2.8e-14 Score=94.53 Aligned_cols=87 Identities=17% Similarity=0.279 Sum_probs=70.9
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--------------------------------
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK-------------------------------- 63 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~-------------------------------- 63 (109)
+..+|+++|+.|+|||||++.+.+..+ ....||.+.+ ...+.+++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 456899999999999999999998876 4566776643 34455554
Q ss_pred -------EEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcccccc
Q 033893 64 -------IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRDFYEV 105 (109)
Q Consensus 64 -------~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~~~~~ 105 (109)
..+.+||++|+++++..+..|++++++++.+++.+...+++.
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~ 134 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDR 134 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHH
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHH
Confidence 788999999999999999999999999999999877665543
No 47
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.54 E-value=3.2e-14 Score=94.92 Aligned_cols=87 Identities=20% Similarity=0.317 Sum_probs=70.7
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEEC--CEEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~--~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
+..+|+++|++|+|||||++.+.+..+ ....|+.+.+ ...+.++ ...+.+||++|+++++..+..|++++++++.
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 101 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVI 101 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEE
Confidence 345789999999999999999998876 4566776643 3344444 3788999999999999999999999999999
Q ss_pred EEeCCCcccccc
Q 033893 94 TKKIEFRDFYEV 105 (109)
Q Consensus 94 ~~~~~~~~~~~~ 105 (109)
+++.+...+++.
T Consensus 102 V~d~~~~~s~~~ 113 (192)
T 2fg5_A 102 VYDITKQDSFYT 113 (192)
T ss_dssp EEETTCTHHHHH
T ss_pred EEeCCCHHHHHH
Confidence 999987765544
No 48
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.54 E-value=2.4e-14 Score=96.60 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=70.8
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
+..+|+++|.+|+|||||++.+.+..+ ..+.||.+... ..+.+++ ..+.+||++|+++++.+++.|++++++++++
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 87 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 87 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEE
Confidence 456799999999999999999998776 45667776443 4556665 6888999999999999999999999999999
Q ss_pred EeCCCccccccc
Q 033893 95 KKIEFRDFYEVE 106 (109)
Q Consensus 95 ~~~~~~~~~~~~ 106 (109)
+|++...+++..
T Consensus 88 ~d~~~~~s~~~~ 99 (212)
T 2j0v_A 88 FSLISKASYENV 99 (212)
T ss_dssp EETTCHHHHHHH
T ss_pred EECCCHHHHHHH
Confidence 999877665543
No 49
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.54 E-value=3.2e-14 Score=91.57 Aligned_cols=85 Identities=16% Similarity=0.230 Sum_probs=68.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC-ceEEEEECCE--EEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP-TSEELSIGKI--KFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~-~~g~i~~~~~--~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
+.+|+++|++|+|||||++.+.+..+ ....|+... ....+.+++. .+.+||++|+++++.++..|++++++++.++
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 82 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVY 82 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEE
Confidence 46799999999999999999997766 345555542 2355666764 5889999999999999999999999999999
Q ss_pred eCCCccccc
Q 033893 96 KIEFRDFYE 104 (109)
Q Consensus 96 ~~~~~~~~~ 104 (109)
+.+...+++
T Consensus 83 d~~~~~s~~ 91 (167)
T 1kao_A 83 SLVNQQSFQ 91 (167)
T ss_dssp ETTCHHHHH
T ss_pred eCCCHHHHH
Confidence 987765543
No 50
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.54 E-value=1.9e-14 Score=95.86 Aligned_cols=86 Identities=24% Similarity=0.389 Sum_probs=68.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
..+|+++|++|+|||||++.+.+.++. ...|+.+. ....+.+++ ..+.+||++|+++++.++..|++++++++.+
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 100 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 100 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEE
Confidence 357899999999999999999987763 45566553 345677776 5788999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++.+...+++.
T Consensus 101 ~d~~~~~s~~~ 111 (191)
T 2a5j_A 101 YDITRRETFNH 111 (191)
T ss_dssp EETTCHHHHHT
T ss_pred EECCCHHHHHH
Confidence 99987766554
No 51
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.53 E-value=2.1e-14 Score=96.55 Aligned_cols=86 Identities=19% Similarity=0.295 Sum_probs=71.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
..+|+++|++|+|||||++.+.+..+ ....|+.+.+ ...+.+++ ..+.+||++|+++++.++..|++++++++++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv 87 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV 87 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEE
Confidence 45789999999999999999998876 4566766643 45677776 4788999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++.+...+++.
T Consensus 88 ~d~~~~~s~~~ 98 (206)
T 2bcg_Y 88 YDVTDQESFNG 98 (206)
T ss_dssp EETTCHHHHHH
T ss_pred EECcCHHHHHH
Confidence 99987765544
No 52
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.53 E-value=3e-14 Score=91.78 Aligned_cols=87 Identities=14% Similarity=0.271 Sum_probs=67.1
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
+..+|+++|.+|+|||||++.+.+..+ ....|+.+.. ...+.+++ ..+.+||.+|+++++.++..|++++++++.+
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 356799999999999999999998776 3455655433 24456666 5788999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++.+...+++.
T Consensus 83 ~d~~~~~s~~~ 93 (168)
T 1u8z_A 83 FSITEMESFAA 93 (168)
T ss_dssp EETTCHHHHHH
T ss_pred EECCCHHHHHH
Confidence 99987665443
No 53
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.53 E-value=9.4e-15 Score=106.12 Aligned_cols=85 Identities=32% Similarity=0.505 Sum_probs=71.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCc
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFR 100 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~ 100 (109)
.+|+|+|.+|+|||||++.+.+..+.+..||.+.....+..++..+.+||++|+++++.++..|++++++++++++.+..
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~ 245 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 245 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCS
T ss_pred ceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCch
Confidence 47999999999999999999988887667888888888888999999999999999999999999999999999999776
Q ss_pred ccccc
Q 033893 101 DFYEV 105 (109)
Q Consensus 101 ~~~~~ 105 (109)
.+++.
T Consensus 246 ~s~~~ 250 (329)
T 3o47_A 246 ERVNE 250 (329)
T ss_dssp SSHHH
T ss_pred HHHHH
Confidence 65543
No 54
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.53 E-value=3e-14 Score=95.83 Aligned_cols=86 Identities=20% Similarity=0.320 Sum_probs=71.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
..+|+++|++|+|||||++.+.+..+ ....|+.+.+ ...+.+++ ..+.+||++|+++++..+..|++++++++.+
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 99 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILV 99 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 35789999999999999999998876 4566766643 45677777 6788999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++.+...+++.
T Consensus 100 ~d~~~~~s~~~ 110 (213)
T 3cph_A 100 YDVTDERTFTN 110 (213)
T ss_dssp EETTCHHHHHT
T ss_pred EECCCHHHHHH
Confidence 99887665543
No 55
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.53 E-value=2.4e-15 Score=99.08 Aligned_cols=86 Identities=20% Similarity=0.332 Sum_probs=49.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
..+|+++|++|+|||||++.+.+..+ ....|+.+. ....+.+++ ..+.+||++|+++++.++..|++++++++.+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 87 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV 87 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEE
Confidence 45789999999999999999997766 356676663 345677777 7888999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++.+...+++.
T Consensus 88 ~d~~~~~s~~~ 98 (183)
T 2fu5_C 88 YDITNEKSFDN 98 (183)
T ss_dssp EETTCHHHHHH
T ss_pred EECcCHHHHHH
Confidence 99987766544
No 56
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.53 E-value=5.4e-14 Score=92.55 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=70.7
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECCE--EEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGKI--KFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~~--~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
+..+|+++|.+|+|||||++.+.+..+ ....|+.+.. ...+.+++. .+.+||++|+++++.+++.|++++++++.+
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV 96 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 456789999999999999999998765 4566665532 345566664 456699999999999999999999999999
Q ss_pred EeCCCccccccc
Q 033893 95 KKIEFRDFYEVE 106 (109)
Q Consensus 95 ~~~~~~~~~~~~ 106 (109)
++.+...+++..
T Consensus 97 ~d~~~~~s~~~~ 108 (183)
T 3kkq_A 97 YSVTDKASFEHV 108 (183)
T ss_dssp EETTCHHHHHTH
T ss_pred EECCCHHHHHHH
Confidence 999877665543
No 57
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.53 E-value=3.9e-14 Score=91.70 Aligned_cols=87 Identities=18% Similarity=0.319 Sum_probs=70.7
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
+..+|+++|++|+|||||++.+.+..+ ....|+.+.+ ...+.+++ ..+.+||.+|.++++..+..|++++++++.
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 84 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEE
Confidence 346789999999999999999998875 4556666533 34556665 678899999999999999999999999999
Q ss_pred EEeCCCcccccc
Q 033893 94 TKKIEFRDFYEV 105 (109)
Q Consensus 94 ~~~~~~~~~~~~ 105 (109)
+++.+...+++.
T Consensus 85 v~d~~~~~s~~~ 96 (170)
T 1z0j_A 85 VYDITKEETFST 96 (170)
T ss_dssp EEETTCHHHHHH
T ss_pred EEECcCHHHHHH
Confidence 999877665544
No 58
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.53 E-value=2.9e-14 Score=96.75 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=71.5
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
...+|+++|.+|+|||||++.+.+..+ ..+.||..... ..+.+++ ..+.+||++|+++++.+++.|++++++++++
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 106 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 106 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEE
Confidence 345789999999999999999998876 44567765433 3455554 6888999999999999999999999999999
Q ss_pred EeCCCccccccc
Q 033893 95 KKIEFRDFYEVE 106 (109)
Q Consensus 95 ~~~~~~~~~~~~ 106 (109)
+|++...+++..
T Consensus 107 ~D~~~~~s~~~~ 118 (205)
T 1gwn_A 107 FDISRPETLDSV 118 (205)
T ss_dssp EETTCHHHHHHH
T ss_pred EECCCHHHHHHH
Confidence 999877666543
No 59
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.53 E-value=4.1e-14 Score=93.15 Aligned_cols=87 Identities=20% Similarity=0.247 Sum_probs=66.2
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc-CceEEEEECCE--EEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH-PTSEELSIGKI--KFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~-~~~g~i~~~~~--~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
++.+|+++|++|+|||||++.+.+..+ ....|+.. .....+.+++. .+.+||++|+++++.+++.|++++++++.+
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 82 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 82 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 356789999999999999999998776 34555543 22345566764 467799999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++.+...+++.
T Consensus 83 ~d~~~~~s~~~ 93 (189)
T 4dsu_A 83 FAINNTKSFED 93 (189)
T ss_dssp EETTCHHHHHH
T ss_pred EECCCHHHHHH
Confidence 99987655543
No 60
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.53 E-value=3.6e-14 Score=94.90 Aligned_cols=88 Identities=15% Similarity=0.178 Sum_probs=66.8
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
+..+|+++|.+|+|||||++.+.+..+ ..+.||.... ...+.+++ +.+.+||++|+++++.+++.|++++++++.+
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 98 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLC 98 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEE
Confidence 456789999999999999999998776 4566766533 24566777 4667999999999999999999999999999
Q ss_pred EeCCCccccccc
Q 033893 95 KKIEFRDFYEVE 106 (109)
Q Consensus 95 ~~~~~~~~~~~~ 106 (109)
++.+...+++..
T Consensus 99 ~d~~~~~s~~~~ 110 (201)
T 2q3h_A 99 FSVVSPSSFQNV 110 (201)
T ss_dssp EETTCHHHHHHH
T ss_pred EECCCHHHHHHH
Confidence 999877665543
No 61
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.53 E-value=2.8e-14 Score=94.93 Aligned_cols=85 Identities=21% Similarity=0.389 Sum_probs=69.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
.+|+++|.+|+|||||++.+.+..+. ...|+.+.+ ...+.+++ ..+.+||++|.++++.++..|+++++++++++
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~ 105 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVF 105 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEE
Confidence 57899999999999999999988764 456665533 34455554 67889999999999999999999999999999
Q ss_pred eCCCcccccc
Q 033893 96 KIEFRDFYEV 105 (109)
Q Consensus 96 ~~~~~~~~~~ 105 (109)
+.+...+++.
T Consensus 106 D~~~~~s~~~ 115 (193)
T 2oil_A 106 DLTKHQTYAV 115 (193)
T ss_dssp ETTCHHHHHT
T ss_pred ECCCHHHHHH
Confidence 9877665543
No 62
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.53 E-value=1.7e-14 Score=93.41 Aligned_cols=86 Identities=21% Similarity=0.325 Sum_probs=66.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
.-+|+++|++|+|||||++.+.+.++ ....|+.+.+ ...+.+++ ..+.+||++|+++++..+..+++++++++.+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEE
Confidence 35789999999999999999998876 4566766643 34566665 6788999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++.+...+++.
T Consensus 83 ~d~~~~~s~~~ 93 (170)
T 1g16_A 83 YDITDERTFTN 93 (170)
T ss_dssp EETTCHHHHHT
T ss_pred EECCCHHHHHH
Confidence 99887665544
No 63
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.53 E-value=1.6e-14 Score=97.18 Aligned_cols=86 Identities=26% Similarity=0.437 Sum_probs=64.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
..+|+++|.+|+|||||++.+.+..+ ....|+.+. ....+.+++ ..+.+||++|+++++.++..|++++++++.+
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 104 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 104 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEE
Confidence 35789999999999999999998776 455666653 345666777 6888999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++.+...+++.
T Consensus 105 ~d~~~~~s~~~ 115 (200)
T 2o52_A 105 YDITSRETYNS 115 (200)
T ss_dssp EETTCHHHHHT
T ss_pred EECcCHHHHHH
Confidence 99987765554
No 64
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=5.1e-14 Score=91.18 Aligned_cols=86 Identities=17% Similarity=0.149 Sum_probs=69.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
+.+|+++|.+|||||||++.+.+..+ ....|+.+... ..+..++ ..+.+||++|+++++.++..|++++++++.++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 82 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 82 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEE
Confidence 45789999999999999999998776 35666665433 2344444 57889999999999999999999999999999
Q ss_pred eCCCcccccc
Q 033893 96 KIEFRDFYEV 105 (109)
Q Consensus 96 ~~~~~~~~~~ 105 (109)
+.+...+++.
T Consensus 83 d~~~~~~~~~ 92 (172)
T 2erx_A 83 SITSRQSLEE 92 (172)
T ss_dssp ETTCHHHHHT
T ss_pred ECcCHHHHHH
Confidence 9987665544
No 65
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.52 E-value=3.4e-14 Score=95.28 Aligned_cols=87 Identities=20% Similarity=0.252 Sum_probs=66.7
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
+..+|+++|+.|+|||||++.+.+..+ ....|+.+ +....+.+++ ..+.+||++|+++++..+..|++++++++.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 106 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLL 106 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEE
Confidence 346789999999999999999998876 45566665 3345667776 568899999999999999999999999999
Q ss_pred EEeCCCcccccc
Q 033893 94 TKKIEFRDFYEV 105 (109)
Q Consensus 94 ~~~~~~~~~~~~ 105 (109)
+++.+...+++.
T Consensus 107 v~d~~~~~s~~~ 118 (199)
T 2p5s_A 107 LYDVTCEKSFLN 118 (199)
T ss_dssp EEETTCHHHHHT
T ss_pred EEECCChHHHHH
Confidence 999987666554
No 66
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.52 E-value=6.9e-14 Score=91.20 Aligned_cols=86 Identities=23% Similarity=0.384 Sum_probs=70.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
..+|+++|..|+|||||++.+.+..+ ....|+.+.+ ...+.+++ ..+.+||++|+++++..+..|++++++++.+
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEE
Confidence 45789999999999999999998876 4456666543 34556665 5788999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++.+...+++.
T Consensus 95 ~d~~~~~s~~~ 105 (179)
T 1z0f_A 95 YDITRRSTYNH 105 (179)
T ss_dssp EETTCHHHHHT
T ss_pred EeCcCHHHHHH
Confidence 99887765544
No 67
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.52 E-value=4.5e-14 Score=93.77 Aligned_cols=86 Identities=21% Similarity=0.330 Sum_probs=70.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
.+|+++|.+|+|||||++.+.+.++ ....|+.+.+ ...+..++ ..+.+||++|+++++..+..|++++++++.++
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 102 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMY 102 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEE
Confidence 4789999999999999999998876 4566766643 34555554 68889999999999999999999999999999
Q ss_pred eCCCccccccc
Q 033893 96 KIEFRDFYEVE 106 (109)
Q Consensus 96 ~~~~~~~~~~~ 106 (109)
+.+...+++..
T Consensus 103 d~~~~~s~~~~ 113 (189)
T 2gf9_A 103 DIANQESFAAV 113 (189)
T ss_dssp ETTCHHHHHTH
T ss_pred ECCCHHHHHHH
Confidence 99776665543
No 68
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.52 E-value=4.5e-14 Score=94.58 Aligned_cols=86 Identities=22% Similarity=0.324 Sum_probs=70.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
..+|+++|++|+|||||++.+.+..+ ....|+.+.+ ...+.+++ ..+.+||++|.++++.++..|++++++++.+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 87 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILM 87 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEE
Confidence 35789999999999999999998876 4566766533 34555664 6888999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++.+...+++.
T Consensus 88 ~d~~~~~s~~~ 98 (203)
T 1zbd_A 88 YDITNEESFNA 98 (203)
T ss_dssp EETTCHHHHHH
T ss_pred EECcCHHHHHH
Confidence 99987665543
No 69
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.52 E-value=5.2e-14 Score=94.61 Aligned_cols=87 Identities=18% Similarity=0.245 Sum_probs=71.6
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
.+.+|+++|.+|+|||||++.+.+..+ ..+.|+.+.+. ..+.+++ ..+.+||++|+++++.++..|++++++++++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 103 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 103 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEE
Confidence 345789999999999999999998876 45667765433 5567776 4788999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++++...+++.
T Consensus 104 ~d~~~~~s~~~ 114 (201)
T 2gco_A 104 FSIDSPDSLEN 114 (201)
T ss_dssp EETTCHHHHHH
T ss_pred EECCCHHHHHH
Confidence 99987665544
No 70
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.52 E-value=3.6e-14 Score=92.37 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=62.0
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCc--eEEEEECC--EEEEEEEcCCccc--ccccHHhhhhcCCEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQI--ARRVWKDYYAKVIGSF 92 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~--~r~~~~~~~~~~~~~v 92 (109)
+..+|+++|++|+|||||++.+.+..+....|+.+.+ ...+.+++ ..+.+||++|++. .+.+.+.|++.+++++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i 82 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV 82 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence 3457999999999999999999988775544444433 45677776 4678999999887 5677788999999999
Q ss_pred EEEeCCCcccccc
Q 033893 93 KTKKIEFRDFYEV 105 (109)
Q Consensus 93 ~~~~~~~~~~~~~ 105 (109)
++++++...+++.
T Consensus 83 ~v~d~~~~~s~~~ 95 (175)
T 2nzj_A 83 IVYSIADRGSFES 95 (175)
T ss_dssp EEEETTCHHHHHH
T ss_pred EEEECCCHHHHHH
Confidence 9999987766554
No 71
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.52 E-value=2.8e-14 Score=96.31 Aligned_cols=93 Identities=17% Similarity=0.139 Sum_probs=69.1
Q ss_pred cCCcccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCC
Q 033893 14 LGLWQKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVI 89 (109)
Q Consensus 14 v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~ 89 (109)
..+..++.+|+++|.+|+|||||++.+.+..+ ....|+.... ...+.+++ +.+.+||++|+++++.++..|+++++
T Consensus 24 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (204)
T 4gzl_A 24 LYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTD 103 (204)
T ss_dssp ------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred HhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCC
Confidence 33445667899999999999999999998766 4556665432 23455565 45569999999999999999999999
Q ss_pred EEEEEEeCCCccccccc
Q 033893 90 GSFKTKKIEFRDFYEVE 106 (109)
Q Consensus 90 ~~v~~~~~~~~~~~~~~ 106 (109)
+++.+++.+...+++..
T Consensus 104 ~~i~v~d~~~~~s~~~~ 120 (204)
T 4gzl_A 104 VFLICFSLVSPASFENV 120 (204)
T ss_dssp EEEEEEETTCHHHHHHH
T ss_pred EEEEEEECCCHHHHHHH
Confidence 99999999877766543
No 72
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.52 E-value=1.7e-14 Score=94.41 Aligned_cols=87 Identities=17% Similarity=0.265 Sum_probs=59.2
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEEC---CEEEEEEEcCCcccccccHHhhhhcCCEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIG---KIKFKAFDLGGHQIARRVWKDYYAKVIGSF 92 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~---~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v 92 (109)
+..+|+++|++|||||||++.+.+..+ ....|+.+ +....+.++ ...+.+||++|+++++..+..|++++++++
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV 86 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEE
Confidence 345789999999999999999998776 45666665 334555555 368899999999999999999999999999
Q ss_pred EEEeCCCcccccc
Q 033893 93 KTKKIEFRDFYEV 105 (109)
Q Consensus 93 ~~~~~~~~~~~~~ 105 (109)
.+++.+...+++.
T Consensus 87 ~v~d~~~~~s~~~ 99 (182)
T 1ky3_A 87 LVYDVTNASSFEN 99 (182)
T ss_dssp EEEETTCHHHHHT
T ss_pred EEEECCChHHHHH
Confidence 9999987765544
No 73
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.52 E-value=4e-14 Score=94.29 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=66.5
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
.++.+|+++|.+|||||||++.+.+..+ ....||.......+.+++ +.+.+||++|+++++ |++++++++.+
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v 92 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFV 92 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEE
Confidence 4556899999999999999999988776 446676544445778887 566779999998766 88899999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
+|++...+++.
T Consensus 93 ~d~~~~~s~~~ 103 (184)
T 3ihw_A 93 FSLEDEISFQT 103 (184)
T ss_dssp EETTCHHHHHH
T ss_pred EECcCHHHHHH
Confidence 99988776654
No 74
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.51 E-value=4e-14 Score=92.81 Aligned_cols=85 Identities=13% Similarity=0.106 Sum_probs=68.6
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
.++.+|+++|.+|+|||||++.+.+..+.+..||.+.. ...+.+++ ..+.+||++|+++ ..|++++++++.+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 35678999999999999999999988886677877643 35566776 5678899999886 5789999999999
Q ss_pred EeCCCcccccccc
Q 033893 95 KKIEFRDFYEVEI 107 (109)
Q Consensus 95 ~~~~~~~~~~~~~ 107 (109)
+|++...+++...
T Consensus 80 ~D~~~~~s~~~~~ 92 (178)
T 2iwr_A 80 FSLEDENSFQAVS 92 (178)
T ss_dssp EETTCHHHHHHHH
T ss_pred EECcCHHHHHHHH
Confidence 9998777665443
No 75
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.51 E-value=5.6e-14 Score=93.91 Aligned_cols=87 Identities=14% Similarity=0.271 Sum_probs=70.6
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
+..+|+++|++|||||||++.+.+..+ ....||.+.. ...+.+++ ..+.+||++|+++++.++..|++++++++.+
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v 92 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 92 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEE
Confidence 345789999999999999999998776 4455665532 35566676 4788999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++++...+++.
T Consensus 93 ~d~~~~~s~~~ 103 (206)
T 2bov_A 93 FSITEMESFAA 103 (206)
T ss_dssp EETTCHHHHHH
T ss_pred EECCCHHHHHH
Confidence 99987665543
No 76
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.1e-14 Score=98.04 Aligned_cols=86 Identities=24% Similarity=0.369 Sum_probs=67.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccC--ceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHP--TSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~--~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
..+|+++|++|+|||||++.+.+..+. ...|+.+. ....+.+++ ..+.+||++|+++++.++..|++++++++++
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV 92 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIV 92 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEE
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEE
Confidence 357899999999999999999988763 55666653 345677777 6888999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++.+...+++.
T Consensus 93 ~D~~~~~s~~~ 103 (223)
T 3cpj_B 93 YDISKSSSYEN 103 (223)
T ss_dssp EC-CCHHHHHH
T ss_pred EeCCCHHHHHH
Confidence 99887766554
No 77
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.51 E-value=6.9e-14 Score=94.46 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=68.4
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC---CEEEEEEEcCCcccccc-cHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG---KIKFKAFDLGGHQIARR-VWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~---~~~i~~~d~~g~~~~r~-~~~~~~~~~~~~v~~ 94 (109)
+..+|+++|.+|+|||||++.+.+..+....|+...+...+.++ +..+.+||++|+++++. +++.|++++++++.+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v 85 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFV 85 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEE
Confidence 45679999999999999999999887755445555666667777 57899999999999988 899999999999999
Q ss_pred EeCCCc
Q 033893 95 KKIEFR 100 (109)
Q Consensus 95 ~~~~~~ 100 (109)
+|.+..
T Consensus 86 ~d~~~~ 91 (214)
T 2fh5_B 86 VDSAAF 91 (214)
T ss_dssp EETTTH
T ss_pred EECCCc
Confidence 998763
No 78
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.51 E-value=7e-14 Score=91.83 Aligned_cols=87 Identities=17% Similarity=0.178 Sum_probs=70.0
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
+..+|+++|.+|+|||||++.+.+..+ ....||..... ..+.+++ ..+.+||++|+++++.++..|++++++++.+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 83 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLIC 83 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEE
Confidence 356789999999999999999998776 45666665332 3556666 4566999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++.+...+++.
T Consensus 84 ~d~~~~~s~~~ 94 (186)
T 1mh1_A 84 FSLVSPASFEN 94 (186)
T ss_dssp EETTCHHHHHH
T ss_pred EECCChhhHHH
Confidence 99987665544
No 79
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.51 E-value=4e-14 Score=94.83 Aligned_cols=87 Identities=15% Similarity=0.274 Sum_probs=70.7
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
+..+|+++|.+|+|||||++.+.+..+ ....|+.+.+ ...+.+++ ..+.+||++|+++++.++..|++++++++.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVL 86 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEE
Confidence 345789999999999999999998876 4566666533 34555655 688999999999999999999999999999
Q ss_pred EEeCCCcccccc
Q 033893 94 TKKIEFRDFYEV 105 (109)
Q Consensus 94 ~~~~~~~~~~~~ 105 (109)
+++.+...+++.
T Consensus 87 v~d~~~~~s~~~ 98 (207)
T 1vg8_A 87 VFDVTAPNTFKT 98 (207)
T ss_dssp EEETTCHHHHHT
T ss_pred EEECCCHHHHHH
Confidence 999877665543
No 80
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.50 E-value=7.4e-14 Score=91.63 Aligned_cols=87 Identities=14% Similarity=0.271 Sum_probs=69.8
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
+..+|+++|++|+|||||++.+.+..+ ....|+.... ...+.+++ ..+.+||++|+++++.++..|++++++++.+
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 96 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEE
Confidence 446799999999999999999998776 3455555432 24456666 4788999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++.+...+++.
T Consensus 97 ~d~~~~~s~~~ 107 (187)
T 2a9k_A 97 FSITEMESFAA 107 (187)
T ss_dssp EETTCHHHHHH
T ss_pred EECcCHHHHHH
Confidence 99987655443
No 81
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.50 E-value=9.2e-14 Score=92.53 Aligned_cols=89 Identities=17% Similarity=0.282 Sum_probs=67.0
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
.+..+|+++|.+|+|||||++.+.+..+ ..+.||.+... ..+.+++ +.+.+||++|+++++.+ ..|+++++++++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~il 97 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLV 97 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEE
Confidence 3456799999999999999999998776 45667766432 3455665 57778999999988875 789999999999
Q ss_pred EEeCCCcccccccc
Q 033893 94 TKKIEFRDFYEVEI 107 (109)
Q Consensus 94 ~~~~~~~~~~~~~~ 107 (109)
+++++...+++...
T Consensus 98 v~d~~~~~s~~~~~ 111 (187)
T 3c5c_A 98 VYSVDSRQSFDSSS 111 (187)
T ss_dssp EEETTCHHHHHHHH
T ss_pred EEECCCHHHHHHHH
Confidence 99998776665443
No 82
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=1.4e-14 Score=96.42 Aligned_cols=86 Identities=20% Similarity=0.326 Sum_probs=69.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEEC--CEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~--~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
.+|+++|.+|+|||||++.+.+..+ ....|+.+.+ ...+.++ +..+.+||++|+++++.++..|++++++++.++
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 103 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 103 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEE
Confidence 4789999999999999999998765 4455665543 3444444 478999999999999999999999999999999
Q ss_pred eCCCccccccc
Q 033893 96 KIEFRDFYEVE 106 (109)
Q Consensus 96 ~~~~~~~~~~~ 106 (109)
+.+...+++..
T Consensus 104 d~~~~~s~~~~ 114 (191)
T 3dz8_A 104 DITNEESFNAV 114 (191)
T ss_dssp ETTCHHHHHTH
T ss_pred ECcCHHHHHHH
Confidence 99877666543
No 83
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=7.7e-14 Score=94.14 Aligned_cols=87 Identities=17% Similarity=0.234 Sum_probs=67.1
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
.+.+|+++|.+|+|||||++.+.+..+. ...|+.+... ..+.+++ ..+.+||++|+++++.++..|++++++++.+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 103 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 103 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEE
Confidence 3457899999999999999999987763 4556665433 4466676 5788999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++++...+++.
T Consensus 104 ~d~~~~~s~~~ 114 (207)
T 2fv8_A 104 FSVDSPDSLEN 114 (207)
T ss_dssp EETTCHHHHHH
T ss_pred EECCCHHHHHH
Confidence 99987665544
No 84
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.49 E-value=1.2e-13 Score=92.29 Aligned_cols=87 Identities=20% Similarity=0.234 Sum_probs=69.9
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
.+..+|+++|.+|+|||||++.+.+.++ ....||.+... ..+.+++ ..+.+||++|+++ +..+..|++++++++.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iil 104 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVL 104 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEE
Confidence 4556899999999999999999998776 45667665433 3456665 5788999999988 8899999999999999
Q ss_pred EEeCCCcccccc
Q 033893 94 TKKIEFRDFYEV 105 (109)
Q Consensus 94 ~~~~~~~~~~~~ 105 (109)
+++.+...+++.
T Consensus 105 v~D~~~~~s~~~ 116 (196)
T 2atv_A 105 VYDITDRGSFEE 116 (196)
T ss_dssp EEETTCHHHHHT
T ss_pred EEECcCHHHHHH
Confidence 999987766554
No 85
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.49 E-value=5.6e-14 Score=94.47 Aligned_cols=87 Identities=14% Similarity=0.160 Sum_probs=66.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccc-cHHhhhhcCCEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARR-VWKDYYAKVIGSFKT 94 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~-~~~~~~~~~~~~v~~ 94 (109)
.+|+++|.+|+|||||++.+.+... ....|+.+ +....+.+++ ..+.+||++|+++.+. +++.|++++++++++
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv 103 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIV 103 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEE
Confidence 5789999999999999999986543 23334433 3345677776 4667899999988765 888999999999999
Q ss_pred EeCCCcccccccc
Q 033893 95 KKIEFRDFYEVEI 107 (109)
Q Consensus 95 ~~~~~~~~~~~~~ 107 (109)
++++...+++...
T Consensus 104 ~d~~~~~s~~~~~ 116 (195)
T 3cbq_A 104 FSVTDRRSFSKVP 116 (195)
T ss_dssp EETTCHHHHHTHH
T ss_pred EECCCHHHHHHHH
Confidence 9998877665543
No 86
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.49 E-value=6e-15 Score=98.66 Aligned_cols=88 Identities=15% Similarity=0.250 Sum_probs=49.2
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcC--cc-cccCCccc--CceEEEEEC----CEEEEEEEcCCcccccccHHhhhhcCC
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDE--RL-VQHQPTQH--PTSEELSIG----KIKFKAFDLGGHQIARRVWKDYYAKVI 89 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~--~~-~~~~pt~~--~~~g~i~~~----~~~i~~~d~~g~~~~r~~~~~~~~~~~ 89 (109)
+..+|+++|++|+|||||++.+.+. .+ ....||.+ +....+.++ ...+.+||++|+++++.++..|+++++
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 98 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY 98 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence 3457899999999999999999987 55 45667765 445677777 468899999999999999999999999
Q ss_pred EEEEEEeCCCccccccc
Q 033893 90 GSFKTKKIEFRDFYEVE 106 (109)
Q Consensus 90 ~~v~~~~~~~~~~~~~~ 106 (109)
+++.+++.+...+++..
T Consensus 99 ~~i~v~d~~~~~s~~~~ 115 (208)
T 2yc2_C 99 YAILVFDVSSMESFESC 115 (208)
T ss_dssp EEEEEEETTCHHHHHHH
T ss_pred EEEEEEECCCHHHHHHH
Confidence 99999999877665543
No 87
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.49 E-value=1.2e-13 Score=91.84 Aligned_cols=87 Identities=15% Similarity=0.140 Sum_probs=69.4
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
+..+|+++|.+|||||||++.+.+..+ ....|+.+... ..+..++ ..+.+||++|+++++.++..|++++++++++
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 86 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILV 86 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEE
Confidence 446799999999999999999998776 34566665333 2344454 5788999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++.+...+++.
T Consensus 87 ~d~~~~~s~~~ 97 (199)
T 2gf0_A 87 FSVTSKQSLEE 97 (199)
T ss_dssp EETTCHHHHHT
T ss_pred EECcCHHHHHH
Confidence 99987665544
No 88
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.49 E-value=2.1e-14 Score=104.81 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=64.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCccc----ccCCcccCceEEEEECCEEEEEEEcCCcccccc---cHHhhhhcCCEEEEE
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLV----QHQPTQHPTSEELSIGKIKFKAFDLGGHQIARR---VWKDYYAKVIGSFKT 94 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~----~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~---~~~~~~~~~~~~v~~ 94 (109)
+|+++|++|+|||||++.+.+..+. ...||.+++..++. ....+.+||++||++++. .++.||+++++++.+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 5799999999999999988765443 25688887776652 247899999999999975 469999999999999
Q ss_pred EeCCCc
Q 033893 95 KKIEFR 100 (109)
Q Consensus 95 ~~~~~~ 100 (109)
+|.+..
T Consensus 80 ~Ditd~ 85 (331)
T 3r7w_B 80 IDSQDE 85 (331)
T ss_dssp CCCSSC
T ss_pred EECCch
Confidence 998765
No 89
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.49 E-value=1.4e-13 Score=88.33 Aligned_cols=85 Identities=19% Similarity=0.265 Sum_probs=67.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
+.+|+++|.+|||||||++.+.+..+ ....|+.... ...+.+++ ..+.+||.+|+++++..+..|+.++++++.++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 82 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEE
Confidence 45789999999999999999998766 3455555432 34556665 46788999999999999999999999999999
Q ss_pred eCCCccccc
Q 033893 96 KIEFRDFYE 104 (109)
Q Consensus 96 ~~~~~~~~~ 104 (109)
+.+...+++
T Consensus 83 d~~~~~~~~ 91 (166)
T 2ce2_X 83 AINNTKSFE 91 (166)
T ss_dssp ETTCHHHHH
T ss_pred ECCCHHHHH
Confidence 987665544
No 90
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.49 E-value=4e-14 Score=95.05 Aligned_cols=87 Identities=20% Similarity=0.284 Sum_probs=68.4
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEEC--CEEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIG--KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~--~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
+..+|+++|.+|+|||||++++.+..+ ....||.+... ..+.++ ...+.+||++|+++++.++..|++++++++.+
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 102 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLV 102 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEE
Confidence 456789999999999999999998876 34556655332 233333 47788999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++.+...+++.
T Consensus 103 ~d~~~~~s~~~ 113 (201)
T 3oes_A 103 YSVTSLHSFQV 113 (201)
T ss_dssp EETTCHHHHHH
T ss_pred EeCCCHHHHHH
Confidence 99987665544
No 91
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.49 E-value=6.2e-14 Score=95.27 Aligned_cols=88 Identities=17% Similarity=0.284 Sum_probs=52.9
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
+..+|+++|.+|+|||||++.+.+..+ ....||.... ...+.+++ ..+.+||++|+++++.+++.|++++++++.+
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 112 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLC 112 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEE
Confidence 446789999999999999999998776 3456665432 34556666 4788999999999999999999999999999
Q ss_pred EeCCCccccccc
Q 033893 95 KKIEFRDFYEVE 106 (109)
Q Consensus 95 ~~~~~~~~~~~~ 106 (109)
++.+...+++..
T Consensus 113 ~d~~~~~s~~~~ 124 (214)
T 2j1l_A 113 FDVTSPNSFDNI 124 (214)
T ss_dssp EETTCHHHHHHH
T ss_pred EECcCHHHHHHH
Confidence 999877665543
No 92
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.48 E-value=1.1e-13 Score=99.47 Aligned_cols=86 Identities=15% Similarity=0.293 Sum_probs=72.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcC--ccc--ccCCcccCceEEEEE-CCEEEEEEEcCCcccc-----cccHHhhhhcCC
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDE--RLV--QHQPTQHPTSEELSI-GKIKFKAFDLGGHQIA-----RRVWKDYYAKVI 89 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~--~~~--~~~pt~~~~~g~i~~-~~~~i~~~d~~g~~~~-----r~~~~~~~~~~~ 89 (109)
..+|+++|.+|+|||||++.+.+. .+. ...||.+...+.+.+ ++..+.+||++|++++ +.+++.|+++++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad 82 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQ 82 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCC
Confidence 457899999999999999998876 332 466788887888877 5689999999999988 789999999999
Q ss_pred EEEEEEeCCCcccccc
Q 033893 90 GSFKTKKIEFRDFYEV 105 (109)
Q Consensus 90 ~~v~~~~~~~~~~~~~ 105 (109)
+++.++|.+...+++.
T Consensus 83 ~vi~V~D~t~~~s~~~ 98 (307)
T 3r7w_A 83 VLIHVFDVESTEVLKD 98 (307)
T ss_dssp EEEEEEETTCSCHHHH
T ss_pred EEEEEEECCChhhHHH
Confidence 9999999987765543
No 93
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.48 E-value=7.5e-14 Score=90.53 Aligned_cols=87 Identities=13% Similarity=0.130 Sum_probs=58.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCccc-cc--CCcccCceEEEEECC--EEEEEEEcCCcccccc-cHHhhhhcCCEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLV-QH--QPTQHPTSEELSIGK--IKFKAFDLGGHQIARR-VWKDYYAKVIGSFKT 94 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~-~~--~pt~~~~~g~i~~~~--~~i~~~d~~g~~~~r~-~~~~~~~~~~~~v~~ 94 (109)
.+|+++|++|+|||||++.+.+.... .. .++.......+.+++ ..+.+||++|+++++. ++..|++++++++.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 82 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIV 82 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEE
Confidence 36899999999999999999876542 22 223334456667776 5677999999998876 788889999999999
Q ss_pred EeCCCcccccccc
Q 033893 95 KKIEFRDFYEVEI 107 (109)
Q Consensus 95 ~~~~~~~~~~~~~ 107 (109)
++++...+++...
T Consensus 83 ~d~~~~~s~~~~~ 95 (169)
T 3q85_A 83 FSVTDRRSFSKVP 95 (169)
T ss_dssp EETTCHHHHHTHH
T ss_pred EECCChHHHHHHH
Confidence 9998877665543
No 94
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.48 E-value=4.9e-13 Score=87.29 Aligned_cols=82 Identities=23% Similarity=0.282 Sum_probs=62.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCc--ccCceEEEEECCEEEEEEEcCCccccc------ccHHhhhh--cC
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPT--QHPTSEELSIGKIKFKAFDLGGHQIAR------RVWKDYYA--KV 88 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt--~~~~~g~i~~~~~~i~~~d~~g~~~~r------~~~~~~~~--~~ 88 (109)
+.+++++|++|+|||||++++.+..+ ....|+ ..+..+.+.+++..+.+||++|+++++ .+.+.|++ ++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 35789999999999999999998764 344453 345567888889999999999988764 45577776 89
Q ss_pred CEEEEEEeCCCcc
Q 033893 89 IGSFKTKKIEFRD 101 (109)
Q Consensus 89 ~~~v~~~~~~~~~ 101 (109)
++++.++|.+...
T Consensus 83 ~~~i~v~D~~~~~ 95 (165)
T 2wji_A 83 DLVVNIVDATALE 95 (165)
T ss_dssp SEEEEEEETTCHH
T ss_pred CEEEEEecCCchh
Confidence 9999999986543
No 95
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.48 E-value=1.3e-14 Score=96.03 Aligned_cols=80 Identities=20% Similarity=0.159 Sum_probs=61.5
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCccccc-----------CCcccCceEEE---EEC--CEEEEEEEcCCcccccccHH
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQH-----------QPTQHPTSEEL---SIG--KIKFKAFDLGGHQIARRVWK 82 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~-----------~pt~~~~~g~i---~~~--~~~i~~~d~~g~~~~r~~~~ 82 (109)
...+|+++|.+|+|||||++.+.+.....+ .||.+.+.... .++ ...+.+||++|+++++.+|+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 92 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRK 92 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHH
Confidence 345789999999999999998887644332 33443322111 222 36789999999999999999
Q ss_pred hhhhcCCEEEEEEeCC
Q 033893 83 DYYAKVIGSFKTKKIE 98 (109)
Q Consensus 83 ~~~~~~~~~v~~~~~~ 98 (109)
.|++++++++.++|.+
T Consensus 93 ~~~~~~d~~i~v~D~~ 108 (198)
T 3t1o_A 93 LILRGVDGIVFVADSA 108 (198)
T ss_dssp HHTTTCCEEEEEEECC
T ss_pred HHHhcCCEEEEEEECC
Confidence 9999999999999987
No 96
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.48 E-value=1.5e-13 Score=89.82 Aligned_cols=83 Identities=14% Similarity=0.139 Sum_probs=69.3
Q ss_pred cccccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCccc--CceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQH--PTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 17 ~~~~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~--~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
..+..+|+++|++|||||||++.+.+..+. ...|+.. +....+.+++..+.+||++|+++++..+..++..+++++.
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 445678999999999999999999987763 3445443 4446788899999999999999999999999999999999
Q ss_pred EEeCCC
Q 033893 94 TKKIEF 99 (109)
Q Consensus 94 ~~~~~~ 99 (109)
+++.+.
T Consensus 85 v~d~~~ 90 (178)
T 2lkc_A 85 VVAADD 90 (178)
T ss_dssp EEETTC
T ss_pred EEECCC
Confidence 998765
No 97
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.47 E-value=3e-14 Score=96.46 Aligned_cols=86 Identities=19% Similarity=0.284 Sum_probs=68.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc--eEEEEEC------------CEEEEEEEcCCcccccccHHhh
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT--SEELSIG------------KIKFKAFDLGGHQIARRVWKDY 84 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~--~g~i~~~------------~~~i~~~d~~g~~~~r~~~~~~ 84 (109)
..+|+++|++|+|||||++.+.+..+ ....||.+.+ ...+.++ ...+.+||++|+++++..+..|
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 104 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF 104 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHH
Confidence 35789999999999999999998766 3455665533 2345554 4678899999999999999999
Q ss_pred hhcCCEEEEEEeCCCcccccc
Q 033893 85 YAKVIGSFKTKKIEFRDFYEV 105 (109)
Q Consensus 85 ~~~~~~~v~~~~~~~~~~~~~ 105 (109)
++++++++.+++.+...+++.
T Consensus 105 ~~~~d~iilV~D~~~~~s~~~ 125 (217)
T 2f7s_A 105 FRDAMGFLLMFDLTSQQSFLN 125 (217)
T ss_dssp HTTCCEEEEEEETTCHHHHHH
T ss_pred hcCCCEEEEEEECcCHHHHHH
Confidence 999999999999877665543
No 98
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.47 E-value=3e-14 Score=93.44 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=60.6
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCce-EEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTS-EELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~-g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
.+..+|+++|.+|+|||||++.+.+..+ ..+.||.+... ..+.+++ ..+.+||++|+++++.++..+++++++++.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 3457899999999999999999998766 34556654221 2233444 456699999999999999999999999999
Q ss_pred EEeCCCccccccc
Q 033893 94 TKKIEFRDFYEVE 106 (109)
Q Consensus 94 ~~~~~~~~~~~~~ 106 (109)
+++.+...+++..
T Consensus 86 v~d~~~~~s~~~~ 98 (182)
T 3bwd_D 86 AFSLISKASYENV 98 (182)
T ss_dssp EEETTCHHHHHHH
T ss_pred EEECCCHHHHHHH
Confidence 9999877665543
No 99
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.46 E-value=1.8e-13 Score=90.65 Aligned_cols=87 Identities=17% Similarity=0.231 Sum_probs=58.4
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
++.+|+++|.+|||||||++.+.+..+ ....|+.... ...+.+++ ..+.+||.+|+++++.++..|++++++++.+
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 99 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEE
Confidence 345789999999999999999998765 3445554422 34566666 5688999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++++...+++.
T Consensus 100 ~d~~~~~s~~~ 110 (190)
T 3con_A 100 FAINNSKSFAD 110 (190)
T ss_dssp EETTCHHHHHH
T ss_pred EECcCHHHHHH
Confidence 99877665443
No 100
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.46 E-value=8.9e-13 Score=86.85 Aligned_cols=85 Identities=19% Similarity=0.169 Sum_probs=63.3
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCccc--ccCC--cccCceEEEEECCEEEEEEEcCCccccccc--------HHhhhhc
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERLV--QHQP--TQHPTSEELSIGKIKFKAFDLGGHQIARRV--------WKDYYAK 87 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~~--~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~~r~~--------~~~~~~~ 87 (109)
..+|+|+|++|+|||||++++.+..+. ...| +..+..+.+.+++..+.+||++|+++.... ...++++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 83 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHh
Confidence 457899999999999999999987542 2222 233456888999999999999998653211 1246889
Q ss_pred CCEEEEEEeCCCccccc
Q 033893 88 VIGSFKTKKIEFRDFYE 104 (109)
Q Consensus 88 ~~~~v~~~~~~~~~~~~ 104 (109)
+++++.++|.+...+++
T Consensus 84 ad~~i~v~D~~~~~s~~ 100 (172)
T 2gj8_A 84 ADRVLFMVDGTTTDAVD 100 (172)
T ss_dssp CSEEEEEEETTTCCCCS
T ss_pred CCEEEEEEECCCCCCHH
Confidence 99999999987765544
No 101
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.45 E-value=6.7e-14 Score=95.18 Aligned_cols=88 Identities=18% Similarity=0.250 Sum_probs=68.9
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEE--EEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEE--LSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFK 93 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~--i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~ 93 (109)
...+|+++|.+|+|||||++.+....+ ....|+.+.+... +.+++ ..+.+||++|+++++.++..|+++++++++
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 93 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 93 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEE
Confidence 345789999999999999999654444 4556766644433 33343 678899999999999999999999999999
Q ss_pred EEeCCCccccccc
Q 033893 94 TKKIEFRDFYEVE 106 (109)
Q Consensus 94 ~~~~~~~~~~~~~ 106 (109)
+++.+...+++..
T Consensus 94 v~d~~~~~s~~~~ 106 (221)
T 3gj0_A 94 MFDVTSRVTYKNV 106 (221)
T ss_dssp EEETTCHHHHHTH
T ss_pred EEECCCHHHHHHH
Confidence 9999877665543
No 102
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.44 E-value=8.5e-14 Score=94.26 Aligned_cols=88 Identities=22% Similarity=0.266 Sum_probs=69.0
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCcccCceEEEEE--C-C--EEEEEEEcCCcccccccHHhhhhcCCEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQHPTSEELSI--G-K--IKFKAFDLGGHQIARRVWKDYYAKVIGSF 92 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~~~~g~i~~--~-~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v 92 (109)
...+|+++|.+|||||||++.+.+..+. ...|+.+.....+.+ . + ..+.+||++|+++++.++..|++++++++
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAI 89 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEE
Confidence 3457899999999999999999977663 445665543333322 2 2 77899999999999999999999999999
Q ss_pred EEEeCCCccccccc
Q 033893 93 KTKKIEFRDFYEVE 106 (109)
Q Consensus 93 ~~~~~~~~~~~~~~ 106 (109)
.+++.+...+++..
T Consensus 90 ~v~d~~~~~s~~~~ 103 (218)
T 4djt_A 90 LFFDVTSRITCQNL 103 (218)
T ss_dssp EEEETTCHHHHHTH
T ss_pred EEEeCCCHHHHHHH
Confidence 99999877665543
No 103
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.44 E-value=3.4e-13 Score=90.38 Aligned_cols=90 Identities=11% Similarity=0.097 Sum_probs=63.8
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcCc--ccccCCcccCc--eEEEEECCE--EEEEEEcCCccc-ccccHHhhhhcCCE
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDER--LVQHQPTQHPT--SEELSIGKI--KFKAFDLGGHQI-ARRVWKDYYAKVIG 90 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~~--~~~~~pt~~~~--~g~i~~~~~--~i~~~d~~g~~~-~r~~~~~~~~~~~~ 90 (109)
....+|+|+|.+|+|||||++.+.+.+ +.+..|+.+.+ ...+.+++. .+.+||+.+++. .+.+++.|++.+++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 345689999999999999999998643 33333334333 356777775 456789988766 56788899999999
Q ss_pred EEEEEeCCCcccccccc
Q 033893 91 SFKTKKIEFRDFYEVEI 107 (109)
Q Consensus 91 ~v~~~~~~~~~~~~~~~ 107 (109)
++++++++...+++...
T Consensus 84 ~i~v~dv~~~~s~~~~~ 100 (192)
T 2cjw_A 84 YLIVYSITDRASFEKAS 100 (192)
T ss_dssp EEEEEETTCHHHHHHHH
T ss_pred EEEEEECCCHHHHHHHH
Confidence 99999998877766543
No 104
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.41 E-value=2e-12 Score=85.34 Aligned_cols=81 Identities=23% Similarity=0.287 Sum_probs=64.3
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcc--cCceEEEEECCEEEEEEEcCCccccc------ccHHhhhhc--
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQ--HPTSEELSIGKIKFKAFDLGGHQIAR------RVWKDYYAK-- 87 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~--~~~~g~i~~~~~~i~~~d~~g~~~~r------~~~~~~~~~-- 87 (109)
++.+|+++|++|||||||++++.+..+ ....|+. .+..+.+.+++..+.+||++|+++++ .++..|+..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 85 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccC
Confidence 456789999999999999999998654 3444543 34567888889999999999988764 467888864
Q ss_pred CCEEEEEEeCCC
Q 033893 88 VIGSFKTKKIEF 99 (109)
Q Consensus 88 ~~~~v~~~~~~~ 99 (109)
+++++.+.|.+.
T Consensus 86 ~~~~i~v~d~~~ 97 (188)
T 2wjg_A 86 PDLVVNIVDATA 97 (188)
T ss_dssp CSEEEEEEEGGG
T ss_pred CCEEEEEecchh
Confidence 899998888754
No 105
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.41 E-value=3e-13 Score=90.55 Aligned_cols=82 Identities=13% Similarity=0.188 Sum_probs=60.2
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEE--E---CCEEEEEEEcCCccccccc-H--HhhhhcCCE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELS--I---GKIKFKAFDLGGHQIARRV-W--KDYYAKVIG 90 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~--~---~~~~i~~~d~~g~~~~r~~-~--~~~~~~~~~ 90 (109)
+..+|+++|.+|+|||||++.+.+.......+...+....+. + ....+.+||++|+++++.. | +.|++++++
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGA 98 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCE
Confidence 446899999999999999999887543332222223323322 2 2378999999999997555 4 899999999
Q ss_pred EEEEEeCCCc
Q 033893 91 SFKTKKIEFR 100 (109)
Q Consensus 91 ~v~~~~~~~~ 100 (109)
++.++|.+..
T Consensus 99 ~i~v~d~~~~ 108 (196)
T 3llu_A 99 LIYVIDAQDD 108 (196)
T ss_dssp EEEEEETTSC
T ss_pred EEEEEECCCc
Confidence 9999998775
No 106
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.40 E-value=8.6e-14 Score=97.02 Aligned_cols=50 Identities=30% Similarity=0.448 Sum_probs=46.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|+++++++++|++ +|+||||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 20 ~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl--------~~p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL--------DKPTEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTEECT
T ss_pred eEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCceEEEECCEEcc
Confidence 68899999999986 99999999999999999999 8889999999998664
No 107
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.39 E-value=1.4e-14 Score=97.21 Aligned_cols=86 Identities=20% Similarity=0.295 Sum_probs=67.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
..+|+++|.+|+|||||++.+.+..+ ....|+.+ +....+.+++ +.+.+||++|+++++.++..|++++++++.+
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 112 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 112 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEE
Confidence 35789999999999999999998765 34455554 4456677777 6788999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++.+...+++.
T Consensus 113 ~d~~~~~s~~~ 123 (199)
T 3l0i_B 113 YDVTDQESFNN 123 (199)
T ss_dssp C-CCCSHHHHH
T ss_pred EECCCHHHHHH
Confidence 99887766544
No 108
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.39 E-value=1.1e-13 Score=95.76 Aligned_cols=50 Identities=26% Similarity=0.369 Sum_probs=45.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..|+.|+|.++|.++.
T Consensus 19 ~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLL--------DAPTEGKVFLEGKEVD 69 (224)
T ss_dssp EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTS--------SCCSEEEEEETTEECC
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEECC
Confidence 57899999999986 99999999999999999998 7888999999998654
No 109
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.39 E-value=1.6e-13 Score=96.73 Aligned_cols=49 Identities=14% Similarity=0.323 Sum_probs=45.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..|+.|+|.++|.++
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl--------~~p~~G~i~~~g~~~ 71 (257)
T 1g6h_A 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF--------LKADEGRVYFENKDI 71 (257)
T ss_dssp EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTEEC
T ss_pred eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCEEC
Confidence 67899999999986 99999999999999999999 888899999999765
No 110
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=8.3e-13 Score=90.53 Aligned_cols=88 Identities=11% Similarity=0.094 Sum_probs=65.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCc--ccccCCcccCc--eEEEEECCE--EEEEEEcCCccc-ccccHHhhhhcCCEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDER--LVQHQPTQHPT--SEELSIGKI--KFKAFDLGGHQI-ARRVWKDYYAKVIGSF 92 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~--~~~~~pt~~~~--~g~i~~~~~--~i~~~d~~g~~~-~r~~~~~~~~~~~~~v 92 (109)
..+|+|+|.+|+|||||++++.+.+ +.+..|+.+.+ ...+.+++. .+.+||+.|++. .+.+.+.|++.+++++
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~i 116 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYL 116 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEE
Confidence 3578999999999999999999753 33433444433 356777775 456799998876 5667788899999999
Q ss_pred EEEeCCCcccccccc
Q 033893 93 KTKKIEFRDFYEVEI 107 (109)
Q Consensus 93 ~~~~~~~~~~~~~~~ 107 (109)
++++++...+++...
T Consensus 117 lVydvt~~~sf~~~~ 131 (211)
T 2g3y_A 117 IVYSITDRASFEKAS 131 (211)
T ss_dssp EEEETTCHHHHHHHH
T ss_pred EEEECCCHHHHHHHH
Confidence 999998877766543
No 111
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.08 E-value=3.7e-14 Score=95.31 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=70.3
Q ss_pred CcccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECC--EEEEEEEcCCcccccccHHhhhhcCCEE
Q 033893 16 LWQKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGK--IKFKAFDLGGHQIARRVWKDYYAKVIGS 91 (109)
Q Consensus 16 ~~~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~--~~i~~~d~~g~~~~r~~~~~~~~~~~~~ 91 (109)
+..+..+|+++|.+|+|||||++.+.+..+ ....||.... ...+.+++ ..+.+||++|+++++.++..|+++++++
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 344566799999999999999999997766 3455555422 23444554 4566999999999999999999999999
Q ss_pred EEEEeCCCccccccc
Q 033893 92 FKTKKIEFRDFYEVE 106 (109)
Q Consensus 92 v~~~~~~~~~~~~~~ 106 (109)
+.+++.+...+++..
T Consensus 106 ilv~D~~~~~s~~~~ 120 (204)
T 3th5_A 106 LICFSLVSPASFENV 120 (204)
Confidence 999998777666554
No 112
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.38 E-value=1.3e-13 Score=98.24 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=45.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl--------~~p~~G~I~~~G~~i 72 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI--------LKPSSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTEEC
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--------CCCCCeEEEECCEEC
Confidence 68899999999986 99999999999999999999 888999999999876
No 113
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.37 E-value=1.8e-13 Score=96.76 Aligned_cols=50 Identities=16% Similarity=0.375 Sum_probs=45.7
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..|+.|+|.++|.++.
T Consensus 21 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl--------~~p~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL--------EKPSEGAIIVNGQNIN 71 (262)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTEECC
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCEEcc
Confidence 57899999999986 99999999999999999999 8888999999998653
No 114
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.36 E-value=2.2e-13 Score=95.11 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=45.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..|+.|+|.++|.++
T Consensus 21 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~ 70 (240)
T 1ji0_A 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL--------VRAQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTEEC
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCceEEECCEEC
Confidence 57889999999986 99999999999999999999 888899999999765
No 115
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.36 E-value=2.2e-13 Score=96.56 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=45.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..|+.|+|.++|.++
T Consensus 39 vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl--------~~p~~G~I~~~g~~i 88 (263)
T 2olj_A 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL--------EDFDEGEIIIDGINL 88 (263)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTEES
T ss_pred EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC--------CCCCCcEEEECCEEC
Confidence 57889999999986 99999999999999999999 888899999999765
No 116
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.35 E-value=1.6e-13 Score=97.38 Aligned_cols=50 Identities=22% Similarity=0.395 Sum_probs=45.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 26 vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--------~~p~~G~I~~~g~~~~ 76 (266)
T 4g1u_C 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY--------LSPSHGECHLLGQNLN 76 (266)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSS--------SCCSSCEEEETTEETT
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCCcEEEECCEECC
Confidence 57899999999986 99999999999999999999 7888999999998654
No 117
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.35 E-value=3e-12 Score=91.27 Aligned_cols=87 Identities=16% Similarity=0.114 Sum_probs=69.8
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCc-eEEEEECCEE--EEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPT-SEELSIGKIK--FKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~-~g~i~~~~~~--i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
...+|+++|.+|+|||||++.+.+..+ ....||.... ...+.+++.. +.+||++|+++++..+..|++++++++.+
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 346799999999999999999997766 4556665432 3455667654 45999999999999999999999999999
Q ss_pred EeCCCcccccc
Q 033893 95 KKIEFRDFYEV 105 (109)
Q Consensus 95 ~~~~~~~~~~~ 105 (109)
++.+...+++.
T Consensus 234 ~d~~~~~s~~~ 244 (332)
T 2wkq_A 234 FSLVSPASFHH 244 (332)
T ss_dssp EETTCHHHHHH
T ss_pred EeCCCHHHHHH
Confidence 99987766544
No 118
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.9e-13 Score=90.68 Aligned_cols=84 Identities=24% Similarity=0.271 Sum_probs=59.6
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc----CCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK----VIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~----~~~~v~~ 94 (109)
+..+|+++|++|||||||++.+.+..+....++..+..+ ..+.+..+.+||++|.+.++..|..|+.+ +++++.+
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v 125 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 125 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC-------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee-eeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEE
Confidence 345789999999999999999998765432222222221 12255678899999999999999999987 8999999
Q ss_pred EeCC-Ccccc
Q 033893 95 KKIE-FRDFY 103 (109)
Q Consensus 95 ~~~~-~~~~~ 103 (109)
+|.+ ...++
T Consensus 126 ~d~~~~~~~~ 135 (193)
T 2ged_A 126 VDSTVDPKKL 135 (193)
T ss_dssp EETTCCHHHH
T ss_pred EECCCCchhH
Confidence 9987 44443
No 119
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.35 E-value=3.9e-13 Score=99.09 Aligned_cols=50 Identities=30% Similarity=0.458 Sum_probs=46.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|+++++++++|++ +|+||||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 19 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl--------~~p~~G~I~i~G~~i~ 69 (359)
T 3fvq_A 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF--------EQPDSGEISLSGKTIF 69 (359)
T ss_dssp EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS--------SCCSEEEEEETTEEEE
T ss_pred EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC--------CCCCCcEEEECCEECc
Confidence 57899999999986 99999999999999999999 8899999999999874
No 120
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.35 E-value=3.4e-13 Score=91.28 Aligned_cols=85 Identities=24% Similarity=0.272 Sum_probs=63.4
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhc----CCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAK----VIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~----~~~~v~~ 94 (109)
+..+|+++|++|+|||||++++.+..+....++..+..+. .+.+..+.+||++|+++++..+..|+++ +++++.+
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v 89 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 89 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET-TGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE-EeeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEE
Confidence 4567899999999999999999987654322222222111 1245678899999999999999999988 8999999
Q ss_pred EeCC-Cccccc
Q 033893 95 KKIE-FRDFYE 104 (109)
Q Consensus 95 ~~~~-~~~~~~ 104 (109)
+|.+ ...+++
T Consensus 90 ~D~~~~~~~~~ 100 (218)
T 1nrj_B 90 VDSTVDPKKLT 100 (218)
T ss_dssp EETTSCTTCCH
T ss_pred EECCCChHHHH
Confidence 9988 444443
No 121
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.33 E-value=3.1e-13 Score=94.86 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=45.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++
T Consensus 24 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~I~i~g~~~ 73 (247)
T 2ff7_A 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF--------YIPENGQVLIDGHDL 73 (247)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTEET
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCEEh
Confidence 67899999999986 99999999999999999999 788899999999764
No 122
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.33 E-value=4.2e-13 Score=99.11 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=46.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|.|. ..|+.|+|.++|.++.
T Consensus 43 aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL--------~~p~~G~I~i~G~~i~ 93 (366)
T 3tui_C 43 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL--------ERPTEGSVLVDGQELT 93 (366)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--------SCCSEEEEEETTEECS
T ss_pred EEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC--------CCCCceEEEECCEECC
Confidence 68899999999997 99999999999999999999 8889999999998765
No 123
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.33 E-value=4.9e-13 Score=94.38 Aligned_cols=49 Identities=27% Similarity=0.364 Sum_probs=44.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..|+.|+|.++|.++
T Consensus 30 vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl--------~~p~~G~I~~~g~~~ 79 (256)
T 1vpl_A 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL--------IKPSSGIVTVFGKNV 79 (256)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTEET
T ss_pred EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEEC
Confidence 57889999999986 99999999999999999999 888899999998754
No 124
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.32 E-value=4.2e-13 Score=92.54 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=44.7
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++
T Consensus 24 il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl--------~~p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY--------LKPLKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTEEG
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCeEEEECCEEh
Confidence 57889999999986 99999999999999999998 788899999999764
No 125
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.32 E-value=4.8e-13 Score=94.73 Aligned_cols=49 Identities=27% Similarity=0.344 Sum_probs=45.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl--------~~p~~G~I~~~g~~~ 71 (266)
T 2yz2_A 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL--------IEPTSGDVLYDGERK 71 (266)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTEEC
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCCcEEEECCEEC
Confidence 67899999999986 99999999999999999999 788899999999765
No 126
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.32 E-value=4.3e-13 Score=95.31 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=45.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
+|++++|.+++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++
T Consensus 34 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl--------~~p~~G~I~~~g~~i 83 (271)
T 2ixe_A 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL--------YQPTGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTEEG
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCCEEEECCEEc
Confidence 67899999999986 99999999999999999999 888899999999765
No 127
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.32 E-value=3.8e-13 Score=94.05 Aligned_cols=50 Identities=26% Similarity=0.439 Sum_probs=45.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|+++++++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 17 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF--------YQPTAGEITIDGQPID 67 (243)
T ss_dssp SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS--------SCCSBSCEEETTEEST
T ss_pred eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCEEhh
Confidence 67899999999986 99999999999999999998 7788999999997653
No 128
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.32 E-value=1.4e-11 Score=79.05 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=60.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCccc--ccCC--cccCceEEEEECCEEEEEEEcCCccc-------ccccHHhhhhcCCE
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLV--QHQP--TQHPTSEELSIGKIKFKAFDLGGHQI-------ARRVWKDYYAKVIG 90 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~--~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~-------~r~~~~~~~~~~~~ 90 (109)
+|+++|++|+|||||++.+.+..+. ...| +..+....+..++..+.+||.+|... .+..+..+++.+++
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 82 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEV 82 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCE
Confidence 6899999999999999999987642 2222 22344567778889999999999876 45567788999999
Q ss_pred EEEEEeCCCc
Q 033893 91 SFKTKKIEFR 100 (109)
Q Consensus 91 ~v~~~~~~~~ 100 (109)
++.+++.+..
T Consensus 83 ~i~v~d~~~~ 92 (161)
T 2dyk_A 83 VLFAVDGRAE 92 (161)
T ss_dssp EEEEEESSSC
T ss_pred EEEEEECCCc
Confidence 9999998653
No 129
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.32 E-value=5.9e-13 Score=98.79 Aligned_cols=50 Identities=30% Similarity=0.482 Sum_probs=46.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+||||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 18 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl--------~~p~~G~I~i~G~~~~ 68 (381)
T 3rlf_A 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL--------ETITSGDLFIGEKRMN 68 (381)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--------SCCSEEEEEETTEECT
T ss_pred EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcC--------CCCCCeEEEECCEECC
Confidence 57899999999987 99999999999999999999 8889999999998764
No 130
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.31 E-value=3.7e-13 Score=96.07 Aligned_cols=49 Identities=29% Similarity=0.346 Sum_probs=44.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..|+.|+|.++|.++
T Consensus 36 vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl--------~~p~~G~I~~~g~~~ 85 (279)
T 2ihy_A 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY--------EPATSGTVNLFGKMP 85 (279)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTBCC
T ss_pred EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCCeEEEECCEEc
Confidence 67899999999986 99999999999999999999 888899999998654
No 131
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.30 E-value=1.1e-12 Score=97.15 Aligned_cols=50 Identities=26% Similarity=0.445 Sum_probs=46.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--------~~p~~G~I~i~g~~~~ 68 (372)
T 1g29_1 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL--------EEPSRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS--------SCCSEEEEEETTEEEE
T ss_pred EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC--------CCCCccEEEECCEECc
Confidence 57899999999986 99999999999999999999 8889999999998875
No 132
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.30 E-value=1e-12 Score=91.88 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=43.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
.|+++++++++ ++ +|+|+||||||||+++|+|. ..|+.|+|.++|.++
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~ 62 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGI--------VKPDRGEVRLNGADI 62 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTS--------SCCSEEEEEETTEEC
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEECCEEC
Confidence 37889999988 76 99999999999999999999 788899999999765
No 133
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.30 E-value=1.5e-12 Score=85.73 Aligned_cols=75 Identities=19% Similarity=0.256 Sum_probs=58.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEEEECCEEEEEEEcCC-----------cccccccHHhhhhc-C
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEELSIGKIKFKAFDLGG-----------HQIARRVWKDYYAK-V 88 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i~~~~~~i~~~d~~g-----------~~~~r~~~~~~~~~-~ 88 (109)
+|+++|++|+|||||++.+.+..+ ....|+.......+.++ .+.+||++| +++++..+..|+++ +
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNA 80 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhh
Confidence 689999999999999999998876 35566666555666666 567889999 77788889999887 7
Q ss_pred CEEEEEEeCC
Q 033893 89 IGSFKTKKIE 98 (109)
Q Consensus 89 ~~~v~~~~~~ 98 (109)
++++.++++.
T Consensus 81 ~~~~~v~~v~ 90 (190)
T 2cxx_A 81 KNIDVAVLVV 90 (190)
T ss_dssp GGCCEEEEEE
T ss_pred ccCCEEEEEE
Confidence 6555555443
No 134
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.30 E-value=8.7e-13 Score=91.54 Aligned_cols=46 Identities=24% Similarity=0.413 Sum_probs=42.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~ 63 (109)
+|+++++++++|++ +|+|+||||||||+++|.|. ..|+.|+|.++|
T Consensus 23 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g 69 (229)
T 2pze_A 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE--------LEPSEGKIKHSG 69 (229)
T ss_dssp SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEECS
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CcCCccEEEECC
Confidence 67899999999986 99999999999999999999 888899999987
No 135
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.30 E-value=8.7e-13 Score=97.11 Aligned_cols=50 Identities=24% Similarity=0.439 Sum_probs=45.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 30 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--------~~p~~G~I~i~g~~i~ 80 (355)
T 1z47_A 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL--------ERPTKGDVWIGGKRVT 80 (355)
T ss_dssp CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS--------SCCSEEEEEETTEECT
T ss_pred EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCccEEEECCEECC
Confidence 67899999999986 99999999999999999999 8889999999998653
No 136
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.30 E-value=9e-13 Score=97.14 Aligned_cols=50 Identities=28% Similarity=0.387 Sum_probs=45.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+||||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--------~~p~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI--------YKPTSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTS--------SCCSEEEEEETTEECT
T ss_pred EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC--------CCCCccEEEECCEECC
Confidence 57899999999986 99999999999999999999 8889999999998653
No 137
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.29 E-value=7.8e-13 Score=93.02 Aligned_cols=49 Identities=20% Similarity=0.244 Sum_probs=44.4
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
.+|++++|++++|++ +|+|+||||||||+++|+|. ..++ |+|.++|.++
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl--------~~p~-G~i~~~g~~~ 63 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM--------TSGK-GSIQFAGQPL 63 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS--------SCCE-EEEEETTEEG
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC--------CCCC-eEEEECCEEC
Confidence 367899999999986 99999999999999999999 8888 9999998764
No 138
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.29 E-value=7e-13 Score=97.49 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=46.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--------~~p~~G~I~i~g~~i~ 70 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL--------DVPSTGELYFDDRLVA 70 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS--------SCCSEEEEEETTEEEE
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCceEEEECCEECc
Confidence 67899999999986 99999999999999999999 8889999999998875
No 139
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.29 E-value=1.1e-12 Score=96.79 Aligned_cols=50 Identities=26% Similarity=0.385 Sum_probs=45.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--------~~p~~G~I~i~g~~i~ 68 (362)
T 2it1_A 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI--------YKPTSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--------SCCSEEEEEETTEECT
T ss_pred EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC--------CCCCceEEEECCEECC
Confidence 57899999999986 99999999999999999999 8889999999998653
No 140
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.29 E-value=8.7e-13 Score=92.00 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=42.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~ 63 (109)
+|+++++++++|++ +|+|+||||||||+++|.|. ..|+.|+|.++|
T Consensus 20 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~I~~~g 66 (237)
T 2cbz_A 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE--------MDKVEGHVAIKG 66 (237)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC--------SEEEEEEEEECS
T ss_pred eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCceEEECC
Confidence 67899999999986 99999999999999999999 788899999987
No 141
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.28 E-value=2.5e-11 Score=83.73 Aligned_cols=80 Identities=13% Similarity=0.066 Sum_probs=60.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCC----cccCceEEEEECCEEEEEEEcCCc-----------ccccccHHh
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQP----TQHPTSEELSIGKIKFKAFDLGGH-----------QIARRVWKD 83 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~p----t~~~~~g~i~~~~~~i~~~d~~g~-----------~~~r~~~~~ 83 (109)
.-+|+|+|.+|+|||||++.|.+..+ ....| |..+....+.+++..+.+||++|. +.++..+..
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 108 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILL 108 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHh
Confidence 35789999999999999999998765 33333 334555677889999999999993 345555566
Q ss_pred hhhcCCEEEEEEeCCC
Q 033893 84 YYAKVIGSFKTKKIEF 99 (109)
Q Consensus 84 ~~~~~~~~v~~~~~~~ 99 (109)
++.++++++.+.+.+.
T Consensus 109 ~~~~~~~~l~v~d~~~ 124 (239)
T 3lxx_A 109 TSPGPHALLLVVPLGR 124 (239)
T ss_dssp TTTCCSEEEEEEETTC
T ss_pred cCCCCcEEEEEeeCCC
Confidence 6778899999998753
No 142
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.28 E-value=1.3e-12 Score=96.72 Aligned_cols=50 Identities=28% Similarity=0.450 Sum_probs=45.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|+++++++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 26 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--------~~p~~G~I~i~g~~i~ 76 (372)
T 1v43_A 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL--------EEPTEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--------SCCSEEEEEETTEECT
T ss_pred EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC--------CCCCceEEEECCEECC
Confidence 57899999999986 99999999999999999999 8889999999998653
No 143
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.27 E-value=9.8e-13 Score=96.59 Aligned_cols=50 Identities=24% Similarity=0.341 Sum_probs=45.7
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|+|. ..++.|+|.++|.++.
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl--------~~p~~G~I~~~g~~i~ 65 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF--------HVPDSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS--------SCCSEEEEEETTEECT
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcC--------CCCCCcEEEECCEECC
Confidence 67899999999986 99999999999999999999 8889999999998653
No 144
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.26 E-value=1e-12 Score=94.99 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=45.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 69 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl--------~~p~~G~I~i~G~~i~ 119 (306)
T 3nh6_A 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF--------YDISSGCIRIDGQDIS 119 (306)
T ss_dssp EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTS--------SCCSEEEEEETTEETT
T ss_pred eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcC--------CCCCCcEEEECCEEcc
Confidence 67899999999985 99999999999999999999 8889999999998764
No 145
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.25 E-value=4.8e-11 Score=84.01 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=64.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECCEEEEEEEcCCcccccc------cHHhhh--hcCC
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGKIKFKAFDLGGHQIARR------VWKDYY--AKVI 89 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~~~i~~~d~~g~~~~r~------~~~~~~--~~~~ 89 (109)
-+|+++|++|||||||++++.|..+ ....|+.. ...+.+.+++..+.+||++|...+.. +++.|+ .+++
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 83 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNAD 83 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCc
Confidence 4689999999999999999998865 23444333 44577888899999999999887766 778888 5799
Q ss_pred EEEEEEeCCCc
Q 033893 90 GSFKTKKIEFR 100 (109)
Q Consensus 90 ~~v~~~~~~~~ 100 (109)
+++.+.|.+..
T Consensus 84 ~vi~v~D~~~~ 94 (271)
T 3k53_A 84 VIVDIVDSTCL 94 (271)
T ss_dssp EEEEEEEGGGH
T ss_pred EEEEEecCCcc
Confidence 99999987553
No 146
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.24 E-value=1.8e-12 Score=91.85 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=43.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
+|++++|++++|++ +|+|+||||||||+++|+|... ..++.|+|.++|.++
T Consensus 35 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~------~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED------YEVTGGTVEFKGKDL 86 (267)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTT------CEEEEEEEEETTEEG
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC------CCCCCeEEEECCEEC
Confidence 57889999999986 9999999999999999999710 136789999998764
No 147
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.24 E-value=4.8e-11 Score=83.91 Aligned_cols=79 Identities=20% Similarity=0.186 Sum_probs=63.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEECCEEEEEEEcCCcccccc----------cHHhhh--h
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSIGKIKFKAFDLGGHQIARR----------VWKDYY--A 86 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~~~~~i~~~d~~g~~~~r~----------~~~~~~--~ 86 (109)
+|+++|.+|||||||++.+.|.+. ....|... ...+.+.+++..+.+||++|...... +++.|+ .
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~ 82 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDL 82 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhC
Confidence 689999999999999999998864 33444433 55678888999999999999877653 677788 7
Q ss_pred cCCEEEEEEeCCCc
Q 033893 87 KVIGSFKTKKIEFR 100 (109)
Q Consensus 87 ~~~~~v~~~~~~~~ 100 (109)
++++++.+.|.+..
T Consensus 83 ~~d~vi~VvDas~~ 96 (256)
T 3iby_A 83 EYDCIINVIDACHL 96 (256)
T ss_dssp CCSEEEEEEEGGGH
T ss_pred CCCEEEEEeeCCCc
Confidence 89999999987654
No 148
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.24 E-value=4.3e-11 Score=86.02 Aligned_cols=85 Identities=16% Similarity=0.066 Sum_probs=66.5
Q ss_pred cccccEEEEEeCCCCcHHHHHHHHhcCcccccC----CcccCceEEEEEC-CEEEEEEEcCCccccc----------ccH
Q 033893 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ----PTQHPTSEELSIG-KIKFKAFDLGGHQIAR----------RVW 81 (109)
Q Consensus 17 ~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~----pt~~~~~g~i~~~-~~~i~~~d~~g~~~~r----------~~~ 81 (109)
+.+.|.|+++|.+|||||||+++|.+.++.... .|.....+....+ +..+.+||++|..+.+ ..+
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 456788999999999999999999998764222 2333445666777 8999999999985544 577
Q ss_pred HhhhhcCCEEEEEEeCCCcc
Q 033893 82 KDYYAKVIGSFKTKKIEFRD 101 (109)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~~ 101 (109)
..++.++|+++.+.+.+...
T Consensus 87 ~~~l~~aD~il~VvD~~~~~ 106 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGW 106 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBS
T ss_pred HHHhhcCCEEEEEEeCCCCC
Confidence 78999999999999986543
No 149
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.24 E-value=3.9e-11 Score=84.15 Aligned_cols=82 Identities=18% Similarity=0.251 Sum_probs=62.5
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcccc---cCC-cccCceEEEEECCEEEEEEEcCCcccccccHHhhhh--------
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQ---HQP-TQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYA-------- 86 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~---~~p-t~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~-------- 86 (109)
++.+|+++|..|+|||||++++.+.+... ..+ |.......+..++..+.+||++|+..++...+.+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~ 114 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVN 114 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhc
Confidence 45678999999999999999999876422 222 333445677788999999999999887666555554
Q ss_pred -cCCEEEEEEeCCCc
Q 033893 87 -KVIGSFKTKKIEFR 100 (109)
Q Consensus 87 -~~~~~v~~~~~~~~ 100 (109)
++++++.+.+++..
T Consensus 115 ~~~~~il~V~~~d~~ 129 (262)
T 3def_A 115 RTIDVLLYVDRLDVY 129 (262)
T ss_dssp CEECEEEEEEESSCS
T ss_pred CCCCEEEEEEcCCCC
Confidence 78899999877543
No 150
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.24 E-value=2.4e-12 Score=90.91 Aligned_cols=48 Identities=19% Similarity=0.344 Sum_probs=43.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
+|+++++++++|++ +|+|+||||||||+++|.|. ..+ .|+|.++|.++
T Consensus 35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl--------~~~-~G~I~i~g~~i 83 (260)
T 2ghi_A 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF--------YDA-EGDIKIGGKNV 83 (260)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--------SCC-EEEEEETTEEG
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc--------CCC-CeEEEECCEEh
Confidence 67899999999986 99999999999999999998 655 79999998765
No 151
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.24 E-value=7.7e-11 Score=84.68 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=63.3
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcCccc--ccCC--cccCceEEEEECCEEEEEEEcCCccc--------ccccHHhhh
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDERLV--QHQP--TQHPTSEELSIGKIKFKAFDLGGHQI--------ARRVWKDYY 85 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~~--~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~--------~r~~~~~~~ 85 (109)
.+.+.|+|+|.+|+|||||++++.+.++. +..| |.....+.+..++..+.+||++|..+ +......++
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 45678999999999999999999988763 2222 22333455566789999999999776 344566788
Q ss_pred hcCCEEEEEEeCCCc
Q 033893 86 AKVIGSFKTKKIEFR 100 (109)
Q Consensus 86 ~~~~~~v~~~~~~~~ 100 (109)
+.+|+++.+++.+..
T Consensus 85 ~~ad~il~VvD~~~~ 99 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHP 99 (301)
T ss_dssp SSCSEEEEEEETTSC
T ss_pred hcCCEEEEEEECCCC
Confidence 999999999998653
No 152
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.23 E-value=2.6e-12 Score=90.18 Aligned_cols=51 Identities=22% Similarity=0.315 Sum_probs=43.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
+|++++|++++|++ +|+|+||||||||+++|.|... ..++.|+|.++|.++
T Consensus 18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~------~~p~~G~I~~~g~~~ 69 (250)
T 2d2e_A 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE------YTVERGEILLDGENI 69 (250)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTT------CEEEEEEEEETTEEC
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC------CCCCceEEEECCEEC
Confidence 57889999999986 9999999999999999999610 246789999999765
No 153
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.22 E-value=2.8e-12 Score=90.82 Aligned_cols=47 Identities=28% Similarity=0.406 Sum_probs=43.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
+|++++++++ +++ +|+|+||||||||+++|+|. . |+.|+|.++|.++
T Consensus 20 il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl--------~-p~~G~I~~~g~~~ 67 (263)
T 2pjz_A 20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL--------L-PYSGNIFINGMEV 67 (263)
T ss_dssp EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS--------S-CCEEEEEETTEEG
T ss_pred eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC--------C-CCCcEEEECCEEC
Confidence 5788999999 875 99999999999999999999 8 8899999999765
No 154
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.22 E-value=3.2e-12 Score=91.72 Aligned_cols=46 Identities=24% Similarity=0.413 Sum_probs=42.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~ 63 (109)
+|++++|.+++|++ +|+|+||||||||+++|.|. ..++.|+|.++|
T Consensus 53 vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl--------~~p~~G~I~~~g 99 (290)
T 2bbs_A 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE--------LEPSEGKIKHSG 99 (290)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS--------SCEEEEEEECCS
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCCcEEEECC
Confidence 57889999999986 99999999999999999999 788899999987
No 155
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.22 E-value=4.7e-11 Score=79.05 Aligned_cols=82 Identities=15% Similarity=0.215 Sum_probs=56.7
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECCEEEEEEEcCC----------cccccccHHhhh
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGKIKFKAFDLGG----------HQIARRVWKDYY 85 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~~~i~~~d~~g----------~~~~r~~~~~~~ 85 (109)
+..+|+++|.+|+|||||++.+.+.++ ....|+.+. .......++ .+.+||++| ++.++.++..|+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND-ELHFVDVPGYGFAKVSKSEREAWGRMIETYI 100 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT-TEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC-cEEEEECCCCCccccCHHHHHHHHHHHHHHH
Confidence 346789999999999999999998764 344444332 222333443 678999999 777888899999
Q ss_pred hcC---CEEEEEEeCCCcc
Q 033893 86 AKV---IGSFKTKKIEFRD 101 (109)
Q Consensus 86 ~~~---~~~v~~~~~~~~~ 101 (109)
+.+ ++++.+++.+...
T Consensus 101 ~~~~~~~~~i~v~d~~~~~ 119 (195)
T 1svi_A 101 TTREELKAVVQIVDLRHAP 119 (195)
T ss_dssp HHCTTEEEEEEEEETTSCC
T ss_pred hhhhcCCEEEEEEECCCCC
Confidence 888 8999999976543
No 156
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.20 E-value=1.1e-10 Score=79.72 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=61.5
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCccc-ccCC--cccCceEEEEECCEEEEEEEcCCc------ccc---cccHHhhhh
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLV-QHQP--TQHPTSEELSIGKIKFKAFDLGGH------QIA---RRVWKDYYA 86 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~p--t~~~~~g~i~~~~~~i~~~d~~g~------~~~---r~~~~~~~~ 86 (109)
+..+|+++|.+|+|||||++.+.+.++. ...| |.....+.+..++..+.+||++|+ ++. ...+..++.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 107 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAH 107 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhc
Confidence 4567999999999999999999988763 2222 233444566667889999999998 331 122345677
Q ss_pred cCCEEEEEEeCCCccccc
Q 033893 87 KVIGSFKTKKIEFRDFYE 104 (109)
Q Consensus 87 ~~~~~v~~~~~~~~~~~~ 104 (109)
.+++++.++|.+...+++
T Consensus 108 ~~d~~i~v~d~~~~~s~~ 125 (228)
T 2qu8_A 108 INGVILFIIDISEQCGLT 125 (228)
T ss_dssp SSEEEEEEEETTCTTSSC
T ss_pred cccEEEEEEecccccCcc
Confidence 889999999987665543
No 157
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.19 E-value=2e-10 Score=80.09 Aligned_cols=81 Identities=12% Similarity=0.095 Sum_probs=59.1
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCccc-c-cC---CcccCceEEEEECCEEEEEEEcCCc--------ccccccHHhhh
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLV-Q-HQ---PTQHPTSEELSIGKIKFKAFDLGGH--------QIARRVWKDYY 85 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~-~-~~---pt~~~~~g~i~~~~~~i~~~d~~g~--------~~~r~~~~~~~ 85 (109)
++-+|+|+|.+|||||||++.|.+.+.. . .. .|..+..+.+..++..+.+||++|. +........++
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~ 99 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCY 99 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHH
Confidence 4457899999999999999999987642 2 11 3444556778889999999999995 33333233333
Q ss_pred ----hcCCEEEEEEeCCC
Q 033893 86 ----AKVIGSFKTKKIEF 99 (109)
Q Consensus 86 ----~~~~~~v~~~~~~~ 99 (109)
..+++++.+.+.+.
T Consensus 100 ~~~~~~~d~il~V~d~~~ 117 (247)
T 3lxw_A 100 LLSAPGPHALLLVTQLGR 117 (247)
T ss_dssp HHHTTCCSEEEEEEETTB
T ss_pred HhcCCCCCEEEEEEeCCC
Confidence 78999999999763
No 158
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.19 E-value=8e-11 Score=83.56 Aligned_cols=79 Identities=20% Similarity=0.260 Sum_probs=59.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCc-ccccCCccc--CceEEEEECCEEEEEEEcCCccccc------ccHHhhhh--cCC
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDER-LVQHQPTQH--PTSEELSIGKIKFKAFDLGGHQIAR------RVWKDYYA--KVI 89 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~-~~~~~pt~~--~~~g~i~~~~~~i~~~d~~g~~~~r------~~~~~~~~--~~~ 89 (109)
.+|+++|.+|||||||++++.+.+ +....|... ...+.+.. +..+.+||++|+..++ .+++.|+. +++
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d 82 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRAD 82 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCC
Confidence 468999999999999999999875 334445333 33344433 6778899999988775 57788887 599
Q ss_pred EEEEEEeCCCc
Q 033893 90 GSFKTKKIEFR 100 (109)
Q Consensus 90 ~~v~~~~~~~~ 100 (109)
+++.++|.+..
T Consensus 83 ~vi~V~D~t~~ 93 (272)
T 3b1v_A 83 SILNVVDATNL 93 (272)
T ss_dssp EEEEEEEGGGH
T ss_pred EEEEEecCCch
Confidence 99999987654
No 159
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.18 E-value=4.1e-11 Score=87.75 Aligned_cols=49 Identities=18% Similarity=0.440 Sum_probs=43.9
Q ss_pred CcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893 50 PTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE 98 (109)
Q Consensus 50 pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~ 98 (109)
||.++...++.+++..+.+||++|++++|.+|.+||+++++++.+++++
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS 195 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLA 195 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECC
Confidence 4456666677888899999999999999999999999999999999997
No 160
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.18 E-value=6.3e-11 Score=78.07 Aligned_cols=80 Identities=23% Similarity=0.333 Sum_probs=58.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCce--EEEEECCEEEEEEEcCC----------cccccccHHhhhhc
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTS--EELSIGKIKFKAFDLGG----------HQIARRVWKDYYAK 87 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~--g~i~~~~~~i~~~d~~g----------~~~~r~~~~~~~~~ 87 (109)
..+|+++|.+|||||||++.+.+.+.....|+.+... ..... +..+.+||++| ++.++.+++.|++.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 101 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV-NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKN 101 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE-TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE-CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhc
Confidence 3579999999999999999999887655555444322 22222 34567899999 77788888999988
Q ss_pred C---CEEEEEEeCCCc
Q 033893 88 V---IGSFKTKKIEFR 100 (109)
Q Consensus 88 ~---~~~v~~~~~~~~ 100 (109)
+ ++++.+.+.+..
T Consensus 102 ~~~~~~vi~v~d~~~~ 117 (195)
T 3pqc_A 102 RWSLQMVFLLVDGRIP 117 (195)
T ss_dssp CTTEEEEEEEEETTSC
T ss_pred CcCceEEEEEecCCCC
Confidence 7 778888876543
No 161
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.17 E-value=1.8e-10 Score=80.94 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=63.6
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcc--cCceEEEEECCEEEEEEEcCCcccccc------cHHhhhh--c
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQ--HPTSEELSIGKIKFKAFDLGGHQIARR------VWKDYYA--K 87 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~--~~~~g~i~~~~~~i~~~d~~g~~~~r~------~~~~~~~--~ 87 (109)
+..+|+++|.+|||||||++.+.+.++ ....|.. ....+.+..++..+.+||++|...++. +.+.|+. +
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 83 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGD 83 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcC
Confidence 345789999999999999999998765 3334433 344567777889999999999887765 3366774 7
Q ss_pred CCEEEEEEeCCCcc
Q 033893 88 VIGSFKTKKIEFRD 101 (109)
Q Consensus 88 ~~~~v~~~~~~~~~ 101 (109)
+++++.+.|.+...
T Consensus 84 ~d~ii~V~D~t~~~ 97 (258)
T 3a1s_A 84 ADLVILVADSVNPE 97 (258)
T ss_dssp CSEEEEEEETTSCH
T ss_pred CCEEEEEeCCCchh
Confidence 99999999986543
No 162
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.16 E-value=6.1e-12 Score=93.58 Aligned_cols=49 Identities=24% Similarity=0.353 Sum_probs=43.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+||||||||||+++|+|. .. +.|+|.++|.++.
T Consensus 36 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl--------~~-~~G~I~i~G~~i~ 85 (390)
T 3gd7_A 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL--------LN-TEGEIQIDGVSWD 85 (390)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTC--------SE-EEEEEEESSCBTT
T ss_pred EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCC--------CC-CCeEEEECCEECC
Confidence 68899999999986 99999999999999999998 66 7899999987553
No 163
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.15 E-value=9e-12 Score=87.68 Aligned_cols=45 Identities=24% Similarity=0.432 Sum_probs=40.7
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG 62 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~ 62 (109)
+|++++|.+++|++ +|+|+||||||||+++|+|. ..++.|+|.+.
T Consensus 20 vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl--------~~p~~G~I~~~ 65 (253)
T 2nq2_C 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI--------HRPIQGKIEVY 65 (253)
T ss_dssp EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTS--------SCCSEEEEEEC
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEEe
Confidence 67899999999986 99999999999999999998 78889999753
No 164
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.15 E-value=2.2e-10 Score=85.80 Aligned_cols=78 Identities=19% Similarity=0.184 Sum_probs=58.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc--cccCCcc--cCceEEEEECCEEEEEEEcCCccc---------ccccHHhhhhcC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL--VQHQPTQ--HPTSEELSIGKIKFKAFDLGGHQI---------ARRVWKDYYAKV 88 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~--~~~~pt~--~~~~g~i~~~~~~i~~~d~~g~~~---------~r~~~~~~~~~~ 88 (109)
+|+|+|.+|+|||||++.|.+.+. .+..|.. ....+.+.+++..+.+||++|.+. ++..+..+++++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~a 82 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 82 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhC
Confidence 589999999999999999998764 2334433 345688889999999999999653 355678899999
Q ss_pred CEEEEEEeCCC
Q 033893 89 IGSFKTKKIEF 99 (109)
Q Consensus 89 ~~~v~~~~~~~ 99 (109)
|+++.++|.+.
T Consensus 83 d~il~V~D~~~ 93 (439)
T 1mky_A 83 DLVLFVVDGKR 93 (439)
T ss_dssp SEEEEEEETTT
T ss_pred CEEEEEEECCC
Confidence 99999999754
No 165
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.14 E-value=5e-10 Score=77.93 Aligned_cols=81 Identities=11% Similarity=0.062 Sum_probs=60.8
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCc-cc-ccCC---cccCceEEEEECCEEEEEEEcCCcccccc-----------cHH
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDER-LV-QHQP---TQHPTSEELSIGKIKFKAFDLGGHQIARR-----------VWK 82 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~-~~-~~~p---t~~~~~g~i~~~~~~i~~~d~~g~~~~r~-----------~~~ 82 (109)
+..+|+|+|.+|||||||++.|.+.. +. ...| |.....+.+..++..+.+||++|...... ...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~ 100 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYL 100 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999876 32 2333 33345567788899999999999765321 223
Q ss_pred hhhhcCCEEEEEEeCCC
Q 033893 83 DYYAKVIGSFKTKKIEF 99 (109)
Q Consensus 83 ~~~~~~~~~v~~~~~~~ 99 (109)
.+++.+++++.+++.+.
T Consensus 101 ~~~~~~d~il~V~d~~~ 117 (260)
T 2xtp_A 101 LSAPGPHVLLLVTQLGR 117 (260)
T ss_dssp HHTTCCSEEEEEEETTC
T ss_pred hcCCCCcEEEEEEeCCC
Confidence 46788999999999864
No 166
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.14 E-value=8.3e-12 Score=82.36 Aligned_cols=35 Identities=29% Similarity=0.149 Sum_probs=32.3
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
.+++++++.++++++ +|+|+||||||||+++|.|.
T Consensus 21 ~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 368889999999986 99999999999999999987
No 167
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.14 E-value=1.3e-10 Score=85.54 Aligned_cols=78 Identities=21% Similarity=0.161 Sum_probs=57.4
Q ss_pred EEEEeCCCCcHHHHHHHHhcCcc-c--ccCCcccCceEEEEECCEEEEEEEcCCc---------ccccccHHhhhhcCCE
Q 033893 23 ILFLGLDNAGKTTLLHMLKDERL-V--QHQPTQHPTSEELSIGKIKFKAFDLGGH---------QIARRVWKDYYAKVIG 90 (109)
Q Consensus 23 i~lvG~~GsGKSTll~~l~g~~~-~--~~~pt~~~~~g~i~~~~~~i~~~d~~g~---------~~~r~~~~~~~~~~~~ 90 (109)
|+|+|++|||||||+++|.+... . ...+|..+..+.+.+++..+.++|..|. +.++..++ ++..+|.
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~ 260 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDA 260 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSE
T ss_pred EEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCE
Confidence 79999999999999999998764 2 2334566778999999999999999885 22333433 5678999
Q ss_pred EEEEEeCCCcc
Q 033893 91 SFKTKKIEFRD 101 (109)
Q Consensus 91 ~v~~~~~~~~~ 101 (109)
++.+.|.+...
T Consensus 261 il~VvD~s~~~ 271 (364)
T 2qtf_A 261 LILVIDSTFSE 271 (364)
T ss_dssp EEEEEETTSCH
T ss_pred EEEEEECCCCc
Confidence 99999986543
No 168
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.13 E-value=2.3e-11 Score=94.03 Aligned_cols=51 Identities=14% Similarity=0.239 Sum_probs=46.7
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+|+++++++++|++ +|+|+||||||||++.+.|. ..|+.|+|.++|.++.
T Consensus 357 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~--------~~p~~G~i~~~g~~~~ 408 (582)
T 3b5x_A 357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF--------YDVDSGSICLDGHDVR 408 (582)
T ss_pred cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCCEEEECCEEhh
Confidence 378999999999985 99999999999999999999 8888999999998765
No 169
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.13 E-value=2.6e-10 Score=80.64 Aligned_cols=81 Identities=20% Similarity=0.172 Sum_probs=62.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcc--cCceEEEEECCEEEEEEEcCCccccc----------ccHHhhh-
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQ--HPTSEELSIGKIKFKAFDLGGHQIAR----------RVWKDYY- 85 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~--~~~~g~i~~~~~~i~~~d~~g~~~~r----------~~~~~~~- 85 (109)
+.+|+++|.+|||||||++++.+.++ ....|.. ....+.+..++..+.+||++|...+. .+++.|+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~ 82 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHh
Confidence 45789999999999999999998865 2344433 34457777788899999999987765 3455565
Q ss_pred -hcCCEEEEEEeCCCc
Q 033893 86 -AKVIGSFKTKKIEFR 100 (109)
Q Consensus 86 -~~~~~~v~~~~~~~~ 100 (109)
.++++++.+.|.+..
T Consensus 83 ~~~~d~ii~VvD~~~~ 98 (274)
T 3i8s_A 83 SGDADLLINVVDASNL 98 (274)
T ss_dssp HTCCSEEEEEEEGGGH
T ss_pred hcCCCEEEEEecCCCh
Confidence 589999999987653
No 170
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.12 E-value=3.1e-10 Score=83.73 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=59.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-cccC--CcccCceEEEEECC-----------------EEEEEEEcCCccccc--
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-VQHQ--PTQHPTSEELSIGK-----------------IKFKAFDLGGHQIAR-- 78 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~~~~--pt~~~~~g~i~~~~-----------------~~i~~~d~~g~~~~r-- 78 (109)
.+|+|+|.+|+|||||+++|.+.+. .... +|..++.|.+.+.+ ..+.+||++|..+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 3689999999999999999998763 2222 36677788888776 478999999987642
Q ss_pred -----ccHHhhhhcCCEEEEEEeCCC
Q 033893 79 -----RVWKDYYAKVIGSFKTKKIEF 99 (109)
Q Consensus 79 -----~~~~~~~~~~~~~v~~~~~~~ 99 (109)
..+..+++++++++.+.+.+.
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 223456889999999998765
No 171
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.12 E-value=2.1e-11 Score=94.32 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=45.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|+++++++++|++ +|+|+||||||||++.+.|. ..|+.|+|.++|.++.
T Consensus 358 ~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~--------~~p~~G~i~~~g~~~~ 408 (582)
T 3b60_A 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF--------YDIDEGHILMDGHDLR 408 (582)
T ss_dssp SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT--------TCCSEEEEEETTEETT
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc--------cCCCCCeEEECCEEcc
Confidence 67899999999985 99999999999999999999 8888999999998654
No 172
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.11 E-value=4.8e-11 Score=91.29 Aligned_cols=83 Identities=20% Similarity=0.233 Sum_probs=60.6
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCcccCceEEE--------EEC----CEEEEEEEcCCcccccccHHhh
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHPTSEEL--------SIG----KIKFKAFDLGGHQIARRVWKDY 84 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~~~g~i--------~~~----~~~i~~~d~~g~~~~r~~~~~~ 84 (109)
.++.+|+++|.+|||||||++.+.+.++ ....||.+.+..+. .++ +..+.+||++|++.++..+..|
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 3456799999999999999999998876 45667776554432 222 4789999999999999999999
Q ss_pred hhcCCEEEEEEeCCCc
Q 033893 85 YAKVIGSFKTKKIEFR 100 (109)
Q Consensus 85 ~~~~~~~v~~~~~~~~ 100 (109)
++++++++.++|.+..
T Consensus 119 l~~~d~ii~V~D~s~~ 134 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTD 134 (535)
T ss_dssp HHSSEEEEEEECGGGG
T ss_pred ccCCcEEEEEEeCCCc
Confidence 9999999999987644
No 173
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.11 E-value=2.4e-10 Score=85.22 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=54.0
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cc--cCCcccCceEEEEECC-----------------EEEEEEEcCCccccc
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQ--HQPTQHPTSEELSIGK-----------------IKFKAFDLGGHQIAR 78 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~--~~pt~~~~~g~i~~~~-----------------~~i~~~d~~g~~~~r 78 (109)
...+++|+|++|+|||||+++|.+.++ .. ..+|..++.|.+.+.+ ..+.+||++|..+.+
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 345689999999999999999998765 22 2235668888888764 248899999977644
Q ss_pred c-------cHHhhhhcCCEEEEEEeCCCcc
Q 033893 79 R-------VWKDYYAKVIGSFKTKKIEFRD 101 (109)
Q Consensus 79 ~-------~~~~~~~~~~~~v~~~~~~~~~ 101 (109)
. .+..+++++++++.+.+.+...
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 3 5678999999999999875443
No 174
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.11 E-value=1.3e-10 Score=77.95 Aligned_cols=84 Identities=20% Similarity=0.265 Sum_probs=50.1
Q ss_pred CcccccE-EEEEeCCCCcHHHHHHHHhcCcc-cccCCcccC--ceEEEEECCEEEEEEEcCCccc----------ccccH
Q 033893 16 LWQKEAK-ILFLGLDNAGKTTLLHMLKDERL-VQHQPTQHP--TSEELSIGKIKFKAFDLGGHQI----------ARRVW 81 (109)
Q Consensus 16 ~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~~--~~g~i~~~~~~i~~~d~~g~~~----------~r~~~ 81 (109)
++..++. ++|+|++|||||||++++.+..+ ....|+.+. ..+.+.+++ .+.++|++|... ++...
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 5666665 69999999999999999998863 333444332 223444443 456789988632 23333
Q ss_pred Hhhhh---cCCEEEEEEeCCCc
Q 033893 82 KDYYA---KVIGSFKTKKIEFR 100 (109)
Q Consensus 82 ~~~~~---~~~~~v~~~~~~~~ 100 (109)
..|++ .+++++++.+++..
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~ 121 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHP 121 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSC
T ss_pred HHHHHhhhcccEEEEEEECCCC
Confidence 34553 57788888887654
No 175
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.09 E-value=5.6e-10 Score=81.33 Aligned_cols=48 Identities=19% Similarity=0.383 Sum_probs=41.9
Q ss_pred cccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893 51 TQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE 98 (109)
Q Consensus 51 t~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~ 98 (109)
|.++...++.+++..+.+||++|++++|.+|.+||+++++++.+++++
T Consensus 154 TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls 201 (327)
T 3ohm_A 154 TTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 201 (327)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGG
T ss_pred eeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECc
Confidence 344445567788999999999999999999999999999999999876
No 176
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.09 E-value=1.8e-11 Score=94.86 Aligned_cols=50 Identities=22% Similarity=0.386 Sum_probs=45.7
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|+++++++++|++ +|+|+||||||||++.|.|. ..|+.|+|.++|.++.
T Consensus 359 vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~--------~~p~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL--------YDPASGTISLDGHDIR 409 (595)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTS--------SCCSEEEEEETTEETT
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------cCCCCcEEEECCEEhh
Confidence 68899999999986 99999999999999999999 8888999999997654
No 177
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.09 E-value=1.8e-11 Score=94.63 Aligned_cols=50 Identities=26% Similarity=0.425 Sum_probs=45.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|+++++++++|++ +|+||||||||||++.+.|. ..|+.|+|.++|.++.
T Consensus 356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~--------~~p~~G~i~~~g~~~~ 406 (578)
T 4a82_A 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF--------YDVTSGQILIDGHNIK 406 (578)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS--------SCCSEEEEEETTEEGG
T ss_pred ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC--------CCCCCcEEEECCEEhh
Confidence 67899999999986 99999999999999999999 8889999999998764
No 178
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.09 E-value=2.5e-11 Score=94.22 Aligned_cols=50 Identities=18% Similarity=0.332 Sum_probs=46.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|+++++++++|++ +|+|+||||||||++.+.|. ..|+.|+|.++|.++.
T Consensus 370 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~--------~~p~~G~i~~~g~~i~ 420 (598)
T 3qf4_B 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF--------YDVDRGQILVDGIDIR 420 (598)
T ss_dssp SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS--------SCCSEEEEEETTEEGG
T ss_pred cccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC--------cCCCCeEEEECCEEhh
Confidence 67899999999986 99999999999999999999 8889999999998765
No 179
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.08 E-value=5.1e-10 Score=83.82 Aligned_cols=79 Identities=25% Similarity=0.287 Sum_probs=56.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc--cccCC--cccCceEEEEECCEEEEEEEcCCcccccccH------------Hhh
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL--VQHQP--TQHPTSEELSIGKIKFKAFDLGGHQIARRVW------------KDY 84 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~--~~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~------------~~~ 84 (109)
.+++|+|++|||||||+++|.+... ....| |..+..+.+.++|..+.+||++|..+..... ..+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 4789999999999999999998854 23333 3335678999999999999999975432221 346
Q ss_pred hhcCCEEEEEEeCCC
Q 033893 85 YAKVIGSFKTKKIEF 99 (109)
Q Consensus 85 ~~~~~~~v~~~~~~~ 99 (109)
+..++.++.+.+.+.
T Consensus 261 i~~ad~vllv~d~~~ 275 (439)
T 1mky_A 261 IEKADVVVIVLDATQ 275 (439)
T ss_dssp HHHCSEEEEEEETTT
T ss_pred HhhCCEEEEEEeCCC
Confidence 778999999888754
No 180
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.07 E-value=1.1e-11 Score=86.80 Aligned_cols=88 Identities=14% Similarity=0.112 Sum_probs=60.1
Q ss_pred cccEEEEEeCC---------CCcHHHHHHHHhc---Ccc-cccCCcc-c--CceE--------------EEEEC--CEEE
Q 033893 19 KEAKILFLGLD---------NAGKTTLLHMLKD---ERL-VQHQPTQ-H--PTSE--------------ELSIG--KIKF 66 (109)
Q Consensus 19 ~~~~i~lvG~~---------GsGKSTll~~l~g---~~~-~~~~pt~-~--~~~g--------------~i~~~--~~~i 66 (109)
+..+|+++|.+ |+|||||++.+.+ ..+ ....|+. + +... .+.++ .+.+
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l 97 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKM 97 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CE
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEE
Confidence 34579999999 9999999999998 434 3455543 2 1111 11123 3678
Q ss_pred EEEE-----------------------cCCcccccccHHhhhh---------------------cCCEEEEEEeCCCc--
Q 033893 67 KAFD-----------------------LGGHQIARRVWKDYYA---------------------KVIGSFKTKKIEFR-- 100 (109)
Q Consensus 67 ~~~d-----------------------~~g~~~~r~~~~~~~~---------------------~~~~~v~~~~~~~~-- 100 (109)
.+|| .+|+++++.+++.||+ +++++++++|++..
T Consensus 98 ~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~ 177 (255)
T 3c5h_A 98 HIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMN 177 (255)
T ss_dssp EEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC---
T ss_pred EEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCch
Confidence 8999 6778888888888888 89999999999876
Q ss_pred cccccc
Q 033893 101 DFYEVE 106 (109)
Q Consensus 101 ~~~~~~ 106 (109)
.+++..
T Consensus 178 ~s~~~~ 183 (255)
T 3c5h_A 178 RNFDDQ 183 (255)
T ss_dssp -CHHHH
T ss_pred hhHHHH
Confidence 555543
No 181
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.07 E-value=4.7e-10 Score=80.45 Aligned_cols=83 Identities=18% Similarity=0.096 Sum_probs=60.2
Q ss_pred cccccEEEEEeCCCCcHHHHHHHHhcCccc--ccCC--cccCceEEEEECCEEEEEEEcCCcc-c--------ccccHHh
Q 033893 17 WQKEAKILFLGLDNAGKTTLLHMLKDERLV--QHQP--TQHPTSEELSIGKIKFKAFDLGGHQ-I--------ARRVWKD 83 (109)
Q Consensus 17 ~~~~~~i~lvG~~GsGKSTll~~l~g~~~~--~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~-~--------~r~~~~~ 83 (109)
..+.+.|+|+|++|||||||+++|.+.++. +..| |.....|.+..++..+.++|++|.. + .......
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 345667899999999999999999998753 2222 2223346667778899999999986 2 2333456
Q ss_pred hhhcCCEEEEEEeCCC
Q 033893 84 YYAKVIGSFKTKKIEF 99 (109)
Q Consensus 84 ~~~~~~~~v~~~~~~~ 99 (109)
+++.+|+++.+.+.+.
T Consensus 85 ~l~~~D~vl~Vvd~~~ 100 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR 100 (301)
T ss_dssp CCCCEEEEEEEEETTC
T ss_pred HHhcCCEEEEEEeCCC
Confidence 6778899888887643
No 182
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.06 E-value=3.8e-10 Score=76.24 Aligned_cols=80 Identities=21% Similarity=0.317 Sum_probs=55.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCc-ccc--cCCcccCceEEEEE---CCEEEEEEEcCC----------cccccccHHh
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDER-LVQ--HQPTQHPTSEELSI---GKIKFKAFDLGG----------HQIARRVWKD 83 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~-~~~--~~pt~~~~~g~i~~---~~~~i~~~d~~g----------~~~~r~~~~~ 83 (109)
..+|+++|.+|||||||++.|.+.+ ... ..|..........+ ++..+.+||++| ++.++.++..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 108 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSS 108 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHH
Confidence 4578999999999999999999876 222 22211222222222 357888999999 4555677788
Q ss_pred hhhc---CCEEEEEEeCCC
Q 033893 84 YYAK---VIGSFKTKKIEF 99 (109)
Q Consensus 84 ~~~~---~~~~v~~~~~~~ 99 (109)
|++. +++++.+.+.+.
T Consensus 109 ~~~~~~~~d~vi~v~d~~~ 127 (223)
T 4dhe_A 109 YLQTRPQLCGMILMMDARR 127 (223)
T ss_dssp HHHHCTTEEEEEEEEETTS
T ss_pred HHhcCcCcCEEEEEEeCCC
Confidence 8887 666888888754
No 183
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.04 E-value=9.6e-11 Score=87.71 Aligned_cols=80 Identities=16% Similarity=0.109 Sum_probs=56.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcccccCCccc----CceEEEEECCEEEEEEEcCCcc--------cccccHHhhhhcC
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQH----PTSEELSIGKIKFKAFDLGGHQ--------IARRVWKDYYAKV 88 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~----~~~g~i~~~~~~i~~~d~~g~~--------~~r~~~~~~~~~~ 88 (109)
.+|+|+|.+|+|||||++.|.+.++....++.+ ...+.+.+++..+.+||++|++ +++..+..+++++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 468999999999999999999876543222222 3345556677889999999985 5677888999999
Q ss_pred CEEEEEEeCCCc
Q 033893 89 IGSFKTKKIEFR 100 (109)
Q Consensus 89 ~~~v~~~~~~~~ 100 (109)
|+++.+.|.+..
T Consensus 84 d~il~vvD~~~~ 95 (436)
T 2hjg_A 84 DVIIFMVNGREG 95 (436)
T ss_dssp SEEEEEEETTTC
T ss_pred CEEEEEEeCCCC
Confidence 999999987543
No 184
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.03 E-value=3.3e-11 Score=93.42 Aligned_cols=50 Identities=18% Similarity=0.427 Sum_probs=45.4
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|+++++++++|++ +|+|+||||||||++.+.|. ..++.|+|.++|.++.
T Consensus 358 ~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~--------~~~~~G~i~i~g~~i~ 408 (587)
T 3qf4_A 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL--------IDPERGRVEVDELDVR 408 (587)
T ss_dssp SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS--------SCCSEEEEEESSSBGG
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------ccCCCcEEEECCEEcc
Confidence 67899999999985 99999999999999999999 8889999999987654
No 185
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.02 E-value=2e-09 Score=80.09 Aligned_cols=78 Identities=18% Similarity=0.294 Sum_probs=59.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc--cccCC--cccCceEEEEECC-----------------EEEEEEEcCCccc---
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL--VQHQP--TQHPTSEELSIGK-----------------IKFKAFDLGGHQI--- 76 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~--~~~~p--t~~~~~g~i~~~~-----------------~~i~~~d~~g~~~--- 76 (109)
.+++|+|+||||||||+++|++.+. ....| |..|+.|.+.+.+ ..+.++|++|...
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s 100 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGAS 100 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCc
Confidence 3579999999999999999998654 23334 5678899999876 4678889888432
Q ss_pred ----ccccHHhhhhcCCEEEEEEeCC
Q 033893 77 ----ARRVWKDYYAKVIGSFKTKKIE 98 (109)
Q Consensus 77 ----~r~~~~~~~~~~~~~v~~~~~~ 98 (109)
.+..+..+++++++++.+.+..
T Consensus 101 ~~e~L~~~fl~~ir~~d~il~Vvd~~ 126 (392)
T 1ni3_A 101 TGVGLGNAFLSHVRAVDAIYQVVRAF 126 (392)
T ss_dssp SSSSSCHHHHHHHTTCSEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334566778999998888764
No 186
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.02 E-value=5.2e-10 Score=85.01 Aligned_cols=83 Identities=24% Similarity=0.209 Sum_probs=50.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc--cccCC--cccCceEEEEECCEEEEEEEcCCcccccccH--------HhhhhcC
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL--VQHQP--TQHPTSEELSIGKIKFKAFDLGGHQIARRVW--------KDYYAKV 88 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~--~~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~--------~~~~~~~ 88 (109)
.+|+|+|.+|+|||||++.|.+.+. .+..| |..+....+.+++..+.+||++|..+.+..+ ..++.++
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~a 313 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEA 313 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccC
Confidence 4689999999999999999998753 33333 2234457788899999999999987765443 3478899
Q ss_pred CEEEEEEeCCCcccc
Q 033893 89 IGSFKTKKIEFRDFY 103 (109)
Q Consensus 89 ~~~v~~~~~~~~~~~ 103 (109)
|+++.++|.+...++
T Consensus 314 D~vl~VvD~s~~~s~ 328 (476)
T 3gee_A 314 DLILYLLDLGTERLD 328 (476)
T ss_dssp SEEEEEEETTTCSSG
T ss_pred CEEEEEEECCCCcch
Confidence 999999998776554
No 187
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.01 E-value=1.4e-10 Score=87.31 Aligned_cols=80 Identities=16% Similarity=0.115 Sum_probs=60.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcccccCCccc----CceEEEEECCEEEEEEEcCC--------cccccccHHhhhhc
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQH----PTSEELSIGKIKFKAFDLGG--------HQIARRVWKDYYAK 87 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~----~~~g~i~~~~~~i~~~d~~g--------~~~~r~~~~~~~~~ 87 (109)
..+|+|+|.+|+|||||+++|.+.++....++.+ ...+.+..++..+.+||++| +++++..+..++++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 3478999999999999999999876543222222 22344445678899999999 77888889999999
Q ss_pred CCEEEEEEeCCC
Q 033893 88 VIGSFKTKKIEF 99 (109)
Q Consensus 88 ~~~~v~~~~~~~ 99 (109)
+|+++.+.|...
T Consensus 103 ad~il~VvD~~~ 114 (456)
T 4dcu_A 103 ADVIIFMVNGRE 114 (456)
T ss_dssp CSEEEEEEESSS
T ss_pred CCEEEEEEeCCC
Confidence 999999988643
No 188
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.00 E-value=5e-10 Score=85.23 Aligned_cols=81 Identities=26% Similarity=0.247 Sum_probs=64.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc--cccCC--cccCceEEEEECCEEEEEEEcCCcc-ccc--------ccHHhhhhc
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL--VQHQP--TQHPTSEELSIGKIKFKAFDLGGHQ-IAR--------RVWKDYYAK 87 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~--~~~~p--t~~~~~g~i~~~~~~i~~~d~~g~~-~~r--------~~~~~~~~~ 87 (109)
.+|+|+|.+|+|||||++.+.+.++ .+..| |..+..+.+.+++..+.+||++|.. +.. .....++.+
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~ 323 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 323 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhc
Confidence 5789999999999999999998753 34444 3446678899999999999999987 543 234578899
Q ss_pred CCEEEEEEeCCCcc
Q 033893 88 VIGSFKTKKIEFRD 101 (109)
Q Consensus 88 ~~~~v~~~~~~~~~ 101 (109)
+|+++.++|.+...
T Consensus 324 aD~vl~VvD~s~~~ 337 (482)
T 1xzp_A 324 ADIVLFVLDASSPL 337 (482)
T ss_dssp CSEEEEEEETTSCC
T ss_pred ccEEEEEecCCCCC
Confidence 99999999986553
No 189
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.99 E-value=8.1e-11 Score=80.72 Aligned_cols=34 Identities=21% Similarity=0.074 Sum_probs=22.7
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
-|++++|+++++++ +|+||||||||||+++|.|.
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999985 99999999999999999986
No 190
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.98 E-value=2.5e-09 Score=75.16 Aligned_cols=81 Identities=15% Similarity=0.208 Sum_probs=56.4
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcccccC---Cc-ccCceEEEEECCEEEEEEEcCCcccccccHH-------hh--h
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQ---PT-QHPTSEELSIGKIKFKAFDLGGHQIARRVWK-------DY--Y 85 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~---pt-~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~-------~~--~ 85 (109)
+..+|+++|.+|+|||||++.|.+.++.... ++ .......+..++..+.+||++|......+.. .| .
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD 117 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence 3557899999999999999999987653222 21 1222345566788999999999876543222 22 2
Q ss_pred hcCCEEEEEEeCCC
Q 033893 86 AKVIGSFKTKKIEF 99 (109)
Q Consensus 86 ~~~~~~v~~~~~~~ 99 (109)
..+++++.+++++.
T Consensus 118 ~~~d~il~v~~~d~ 131 (270)
T 1h65_A 118 KTIDVLLYVDRLDA 131 (270)
T ss_dssp CEECEEEEEEESSC
T ss_pred CCCCEEEEEEeCCC
Confidence 36899999987754
No 191
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.97 E-value=1.4e-09 Score=81.37 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=59.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc--cccCC--cccCceEEEEECCEEEEEEEcCCc----------ccccccHH-hhh
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL--VQHQP--TQHPTSEELSIGKIKFKAFDLGGH----------QIARRVWK-DYY 85 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~--~~~~p--t~~~~~g~i~~~~~~i~~~d~~g~----------~~~r~~~~-~~~ 85 (109)
.+|+++|.+|+|||||++++.+.++ ....| |.......+.+++..+.+||++|+ ++++.+.. .++
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~ 255 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAI 255 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHH
Confidence 4789999999999999999998764 23333 223334677889999999999997 44444443 478
Q ss_pred hcCCEEEEEEeCCCcc
Q 033893 86 AKVIGSFKTKKIEFRD 101 (109)
Q Consensus 86 ~~~~~~v~~~~~~~~~ 101 (109)
++++++++++|.+...
T Consensus 256 ~~ad~~llv~D~~~~~ 271 (436)
T 2hjg_A 256 DRSEVVAVVLDGEEGI 271 (436)
T ss_dssp HHCSEEEEEEETTTCC
T ss_pred HhCCEEEEEEcCCcCC
Confidence 8999999999986643
No 192
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.94 E-value=3.8e-09 Score=77.10 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=22.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL 45 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~ 45 (109)
+|+++|.+|||||||+++|.|..+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCc
Confidence 789999999999999999999765
No 193
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.93 E-value=8.6e-10 Score=80.66 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=60.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc--cc-cCCcccCceEEEEECC-EEEEEEEcCCcc----cccccHHhhhh---cCCE
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL--VQ-HQPTQHPTSEELSIGK-IKFKAFDLGGHQ----IARRVWKDYYA---KVIG 90 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~--~~-~~pt~~~~~g~i~~~~-~~i~~~d~~g~~----~~r~~~~~~~~---~~~~ 90 (109)
+|+|+|.+|||||||++++.+.+. .. ..+|..+..+.+.+++ ..+.+||++|.. ..+.+...|++ ++++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ 239 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 239 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccE
Confidence 578999999999999999997653 22 2346667788888886 889999998853 34445566655 5999
Q ss_pred EEEEEeCCC
Q 033893 91 SFKTKKIEF 99 (109)
Q Consensus 91 ~v~~~~~~~ 99 (109)
++.+.|.+.
T Consensus 240 ll~VvD~s~ 248 (342)
T 1lnz_A 240 IVHVIDMSG 248 (342)
T ss_dssp EEEEEESSC
T ss_pred EEEEEECCc
Confidence 999999875
No 194
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.93 E-value=9.5e-09 Score=73.07 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCc-ccccEEEEEeCCCCcHHHHHHHHhcCcc
Q 033893 5 DWFYGILASLGLW-QKEAKILFLGLDNAGKTTLLHMLKDERL 45 (109)
Q Consensus 5 ~~~~~~l~~v~~~-~~~~~i~lvG~~GsGKSTll~~l~g~~~ 45 (109)
..+.+++..+... .+..+|+++|..|||||||+++|.|..+
T Consensus 8 ~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 8 NKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp HHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred HHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 4455556555543 4456899999999999999999998865
No 195
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.92 E-value=2.7e-09 Score=79.95 Aligned_cols=86 Identities=17% Similarity=0.182 Sum_probs=61.8
Q ss_pred hcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcc--cc-cCCcccCceEEEEECC-EEEEEEEcCCccc----ccccHHh
Q 033893 13 SLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERL--VQ-HQPTQHPTSEELSIGK-IKFKAFDLGGHQI----ARRVWKD 83 (109)
Q Consensus 13 ~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~--~~-~~pt~~~~~g~i~~~~-~~i~~~d~~g~~~----~r~~~~~ 83 (109)
+++++.+.+. ++|+|+||||||||+++|++... .. ...|..+..|.+.+++ ..+.++|..|... .+.+...
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~ 228 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLE 228 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHH
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHH
Confidence 4566666665 69999999999999999998742 22 2234567788888886 8888999988632 2223333
Q ss_pred h---hhcCCEEEEEEeCC
Q 033893 84 Y---YAKVIGSFKTKKIE 98 (109)
Q Consensus 84 ~---~~~~~~~v~~~~~~ 98 (109)
| ...++.++.+.+++
T Consensus 229 fl~~~era~~lL~vvDls 246 (416)
T 1udx_A 229 FLRHIARTRVLLYVLDAA 246 (416)
T ss_dssp HHHHHTSSSEEEEEEETT
T ss_pred HHHHHHHHHhhhEEeCCc
Confidence 3 34689999999886
No 196
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.90 E-value=3.9e-10 Score=93.87 Aligned_cols=50 Identities=24% Similarity=0.370 Sum_probs=46.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|+++++++++|++ +|+|+||||||||++.|.|. ..++.|+|.++|.++.
T Consensus 405 vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~--------~~~~~G~i~i~g~~i~ 455 (1284)
T 3g5u_A 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL--------YDPLDGMVSIDGQDIR 455 (1284)
T ss_dssp SEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS--------SCCSEEEEEETTEEGG
T ss_pred ceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCeEEEECCEEHH
Confidence 68899999999985 99999999999999999998 8889999999998764
No 197
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.88 E-value=5.3e-09 Score=80.34 Aligned_cols=80 Identities=14% Similarity=0.040 Sum_probs=62.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHhc------------------Ccccc-------cCCcccCceEEEEECCEEEEEEEcCCcc
Q 033893 21 AKILFLGLDNAGKTTLLHMLKD------------------ERLVQ-------HQPTQHPTSEELSIGKIKFKAFDLGGHQ 75 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g------------------~~~~~-------~~pt~~~~~g~i~~~~~~i~~~d~~g~~ 75 (109)
.+|+|+|.+|||||||++.|.. ....+ ...|.......+.++++.+.+||++|+.
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHA 93 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCch
Confidence 3579999999999999999951 11111 1123344556778889999999999999
Q ss_pred cccccHHhhhhcCCEEEEEEeCCCc
Q 033893 76 IARRVWKDYYAKVIGSFKTKKIEFR 100 (109)
Q Consensus 76 ~~r~~~~~~~~~~~~~v~~~~~~~~ 100 (109)
+++..+..+++.+|+++++.+.+..
T Consensus 94 df~~~~~~~l~~aD~allVvDa~~g 118 (528)
T 3tr5_A 94 DFTEDTYRTLTAVDSALMVIDAAKG 118 (528)
T ss_dssp TCCHHHHHGGGGCSEEEEEEETTTC
T ss_pred hHHHHHHHHHHhCCEEEEEEeCCCC
Confidence 9999999999999999999987653
No 198
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.87 E-value=3e-10 Score=85.07 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=30.1
Q ss_pred HHHHhcCCcccccE--------------------E-EEEeCCCCcHHHHHHHHhcC
Q 033893 9 GILASLGLWQKEAK--------------------I-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 9 ~~l~~v~~~~~~~~--------------------i-~lvG~~GsGKSTll~~l~g~ 43 (109)
.+|+++++.+++|+ + +|+|+||||||||+|+|.|.
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 36777877777776 5 99999999999999999997
No 199
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.86 E-value=3.2e-08 Score=69.65 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCc--ccccEEEEEeCCCCcHHHHHHHHhcCcc
Q 033893 5 DWFYGILASLGLW--QKEAKILFLGLDNAGKTTLLHMLKDERL 45 (109)
Q Consensus 5 ~~~~~~l~~v~~~--~~~~~i~lvG~~GsGKSTll~~l~g~~~ 45 (109)
+.+.+.|..+... .+..+|+++|.+|||||||+++|.+.++
T Consensus 9 ~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 9 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp HHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred HHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 3444455554432 3456899999999999999999998875
No 200
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.86 E-value=1.2e-08 Score=74.49 Aligned_cols=83 Identities=14% Similarity=0.050 Sum_probs=59.1
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCccc-cc--CCcccCceEEEEECCEEEEEEEcCCccccc---------ccHHhhhh
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLV-QH--QPTQHPTSEELSIGKIKFKAFDLGGHQIAR---------RVWKDYYA 86 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~-~~--~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r---------~~~~~~~~ 86 (109)
...+++++|.+|+|||||++.+.+.... .. .+|.....+.+..++..+.+||++|..... .....+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 245 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRY 245 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHh
Confidence 4457899999999999999999987642 22 234445566777788899999999975421 12224455
Q ss_pred cCCEEEEEEeCCCcc
Q 033893 87 KVIGSFKTKKIEFRD 101 (109)
Q Consensus 87 ~~~~~v~~~~~~~~~ 101 (109)
.+++++.+.|.+...
T Consensus 246 ~ad~illV~D~s~~~ 260 (357)
T 2e87_A 246 LGNLIIYIFDPSEHC 260 (357)
T ss_dssp TCSEEEEEECTTCTT
T ss_pred cCCEEEEEEeCCccc
Confidence 789999999976543
No 201
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.86 E-value=2.8e-09 Score=80.74 Aligned_cols=80 Identities=19% Similarity=0.207 Sum_probs=53.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc--cccCCccc--CceEEEEECCEEEEEEEcCCcccccccHH--------hhhhcC
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL--VQHQPTQH--PTSEELSIGKIKFKAFDLGGHQIARRVWK--------DYYAKV 88 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~--~~~~pt~~--~~~g~i~~~~~~i~~~d~~g~~~~r~~~~--------~~~~~~ 88 (109)
.+|+|+|.+|+|||||++.|.+.++ .+..|+.. +....+.+++..+.+||++|.......++ .++.++
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~a 304 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTA 304 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCCSC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcC
Confidence 4689999999999999999997653 33334332 33467888999999999999765443333 367789
Q ss_pred CEEEEEEeCCCc
Q 033893 89 IGSFKTKKIEFR 100 (109)
Q Consensus 89 ~~~v~~~~~~~~ 100 (109)
|.++.+++.+..
T Consensus 305 D~vl~VvD~s~~ 316 (462)
T 3geh_A 305 DLVLLTIDAATG 316 (462)
T ss_dssp SEEEEEEETTTC
T ss_pred CEEEEEeccCCC
Confidence 999999997654
No 202
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.86 E-value=1.7e-08 Score=79.35 Aligned_cols=83 Identities=14% Similarity=0.034 Sum_probs=62.2
Q ss_pred cccccE-EEEEeCCCCcHHHHHHHHhcCccc--------------cc-------CCcccCceEEEEECCEEEEEEEcCCc
Q 033893 17 WQKEAK-ILFLGLDNAGKTTLLHMLKDERLV--------------QH-------QPTQHPTSEELSIGKIKFKAFDLGGH 74 (109)
Q Consensus 17 ~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~--------------~~-------~pt~~~~~g~i~~~~~~i~~~d~~g~ 74 (109)
..++++ ++|+|++|+|||||+++|.+.... +. ..+.......+..++..+.+||.+|+
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~ 84 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY 84 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence 445555 699999999999999999843211 00 11223334556667899999999999
Q ss_pred ccccccHHhhhhcCCEEEEEEeCCC
Q 033893 75 QIARRVWKDYYAKVIGSFKTKKIEF 99 (109)
Q Consensus 75 ~~~r~~~~~~~~~~~~~v~~~~~~~ 99 (109)
.+++..+..+++.+++++++.+.+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~ 109 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEA 109 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTT
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCc
Confidence 9998888999999999999998643
No 203
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.85 E-value=3.3e-09 Score=79.47 Aligned_cols=80 Identities=16% Similarity=0.105 Sum_probs=58.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcC--ccc--------------------------------ccCCcccCceEEEEECCEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDE--RLV--------------------------------QHQPTQHPTSEELSIGKIK 65 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~--~~~--------------------------------~~~pt~~~~~g~i~~~~~~ 65 (109)
.-+|+++|..|+|||||+++|.+. .+. +...|.......+..++..
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~ 85 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 85 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence 346899999999999999999753 121 0112333333445566788
Q ss_pred EEEEEcCCcccccccHHhhhhcCCEEEEEEeCCC
Q 033893 66 FKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEF 99 (109)
Q Consensus 66 i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~ 99 (109)
+.+||.+|++++...+..+++++|+++++.+.+.
T Consensus 86 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~ 119 (435)
T 1jny_A 86 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKK 119 (435)
T ss_dssp EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST
T ss_pred EEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC
Confidence 9999999999998888999999999999999876
No 204
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.85 E-value=6e-10 Score=81.00 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=40.4
Q ss_pred HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCE
Q 033893 10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI 64 (109)
Q Consensus 10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~ 64 (109)
+++++++.+++++ ++|+|+||||||||+++|.+. ..++.|.|.+++.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~--------~~~~~g~i~i~~~ 207 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF--------IPKEERIISIEDT 207 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGG--------SCTTSCEEEEESS
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCC--------CcCCCcEEEECCe
Confidence 6788888888887 599999999999999999998 6677788887663
No 205
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.85 E-value=5.3e-10 Score=91.00 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=41.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~ 63 (109)
+|++++|.+++|++ +|+|+||||||||+++|.|. ..++.|+|.+++
T Consensus 688 iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl--------l~P~sG~I~~~~ 734 (986)
T 2iw3_A 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE--------LLPTSGEVYTHE 734 (986)
T ss_dssp SEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTS--------SCCSEEEEEECT
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCceEEEEcC
Confidence 57889999999975 99999999999999999999 788899999874
No 206
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.83 E-value=9e-09 Score=77.37 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=60.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc--cccCCc--ccCceEEEEECCEEEEEEEcCC----------cccccccHH-hh
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL--VQHQPT--QHPTSEELSIGKIKFKAFDLGG----------HQIARRVWK-DY 84 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~--~~~~pt--~~~~~g~i~~~~~~i~~~d~~g----------~~~~r~~~~-~~ 84 (109)
..+++++|.+|+|||||++.+.+.+. ....|. ..+....+.+++..+.+||++| +++++.+.. .+
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~ 274 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKA 274 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHH
T ss_pred cceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHH
Confidence 35689999999999999999997752 233332 2344577888999999999999 677766655 47
Q ss_pred hhcCCEEEEEEeCCC
Q 033893 85 YAKVIGSFKTKKIEF 99 (109)
Q Consensus 85 ~~~~~~~v~~~~~~~ 99 (109)
++++++++++.|.+.
T Consensus 275 ~~~ad~~llviD~~~ 289 (456)
T 4dcu_A 275 IDRSEVVAVVLDGEE 289 (456)
T ss_dssp HHHCSEEEEEEETTT
T ss_pred HhhCCEEEEEEeCCC
Confidence 889999999998765
No 207
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.83 E-value=1.1e-09 Score=91.49 Aligned_cols=50 Identities=18% Similarity=0.357 Sum_probs=46.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|+++++++++|+. +|+|++|||||||++.|.|. ..+..|+|.++|.++.
T Consensus 433 vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~--------~~~~~G~I~idG~~i~ 483 (1321)
T 4f4c_A 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY--------YDVLKGKITIDGVDVR 483 (1321)
T ss_dssp SEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTS--------SCCSEEEEEETTEETT
T ss_pred eeeceEEeecCCcEEEEEecCCCcHHHHHHHhccc--------cccccCcccCCCccch
Confidence 58899999999985 99999999999999999998 8899999999998765
No 208
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.83 E-value=6.2e-10 Score=92.64 Aligned_cols=50 Identities=22% Similarity=0.381 Sum_probs=45.6
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|++ +|+|+||||||||++.|.|. ..++.|+|.++|.++.
T Consensus 1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~--------~~p~~G~I~i~g~~i~ 1098 (1284)
T 3g5u_A 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF--------YDPMAGSVFLDGKEIK 1098 (1284)
T ss_dssp SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS--------SCCSEEEEESSSSCTT
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------cCCCCCEEEECCEEcc
Confidence 68899999999985 99999999999999999998 8889999999987654
No 209
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.82 E-value=1.4e-08 Score=74.94 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=56.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccC--CcccCceEEEEEC---------------------CEEEEEEEcCCcccc
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQ--PTQHPTSEELSIG---------------------KIKFKAFDLGGHQIA 77 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~--pt~~~~~g~i~~~---------------------~~~i~~~d~~g~~~~ 77 (109)
+++|+|++|+|||||+++|.+... .... .|..++.|.+.+. +..+.+||++|..+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~ 82 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKG 82 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcccc
Confidence 579999999999999999997642 1111 2455666665542 356889999997653
Q ss_pred c-------ccHHhhhhcCCEEEEEEeCCC
Q 033893 78 R-------RVWKDYYAKVIGSFKTKKIEF 99 (109)
Q Consensus 78 r-------~~~~~~~~~~~~~v~~~~~~~ 99 (109)
. ..+..+++++++++.+.+.+.
T Consensus 83 a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 83 AHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 2 123456889999999998765
No 210
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.82 E-value=2.6e-10 Score=86.90 Aligned_cols=50 Identities=16% Similarity=0.066 Sum_probs=42.1
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
.+|+++++++++ ++ +|+|+||||||||+++|.|. ..++.|+|.++|.++.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl--------~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA--------LIPDLTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHH--------HCCCTTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC--------CCCCCCEEEECCEEcc
Confidence 457889999988 75 99999999999999999998 6777788888776543
No 211
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.81 E-value=3.7e-09 Score=79.58 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=41.0
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCE
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI 64 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~ 64 (109)
.+|+++ +++.+|.+ +|+|+||||||||+++|++. ..++.|.|.++|.
T Consensus 146 ~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~--------~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 146 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARY--------TRADVIVVGLIGE 193 (438)
T ss_dssp HHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHH--------SCCSEEEEEEESC
T ss_pred eEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcc--------cCCCeEEEEEece
Confidence 478899 99988875 99999999999999999998 6778888877664
No 212
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.81 E-value=5.4e-10 Score=93.24 Aligned_cols=50 Identities=22% Similarity=0.342 Sum_probs=46.3
Q ss_pred HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEE
Q 033893 10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 67 (109)
Q Consensus 10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~ 67 (109)
+|++++|++++|+ ++|+|++|||||||++.|.+. ..|..|+|.+||+++.
T Consensus 1094 VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl--------~~p~~G~I~iDG~di~ 1144 (1321)
T 4f4c_A 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF--------YDTLGGEIFIDGSEIK 1144 (1321)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTS--------SCCSSSEEEETTEETT
T ss_pred cccceeEEECCCCEEEEECCCCChHHHHHHHHhcC--------ccCCCCEEEECCEEhh
Confidence 6899999999987 699999999999999999998 8888999999999776
No 213
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.80 E-value=1.3e-09 Score=83.87 Aligned_cols=47 Identities=26% Similarity=0.201 Sum_probs=39.5
Q ss_pred cCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEE
Q 033893 14 LGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKA 68 (109)
Q Consensus 14 v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~ 68 (109)
.++++++|++ +|+|+||||||||+++|.|. ..++.|+|.+++..+.+
T Consensus 287 ~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~~~~i~~ 334 (538)
T 3ozx_A 287 DNGEAKEGEIIGILGPNGIGKTTFARILVGE--------ITADEGSVTPEKQILSY 334 (538)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHHHHHHTTS--------SCCSBCCEESSCCCEEE
T ss_pred ccceECCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCcEEEECCeeeEe
Confidence 3456778886 99999999999999999998 78888999888766553
No 214
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.80 E-value=1.3e-09 Score=80.01 Aligned_cols=45 Identities=24% Similarity=0.267 Sum_probs=38.4
Q ss_pred HHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893 11 LASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63 (109)
Q Consensus 11 l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~ 63 (109)
++++++.+++++ ++|+|+||||||||+++|.+. ..++.|.|.+++
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~--------~~~~~g~I~ie~ 210 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQE--------IPFDQRLITIED 210 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT--------SCTTSCEEEEES
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc--------CCCCceEEEECC
Confidence 488888998887 599999999999999999998 666677777764
No 215
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.79 E-value=4.1e-08 Score=69.10 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=36.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcc-c-cc-------CCcccCceEEEEE--CC--EEEEEEEcCCc
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERL-V-QH-------QPTQHPTSEELSI--GK--IKFKAFDLGGH 74 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~-~-~~-------~pt~~~~~g~i~~--~~--~~i~~~d~~g~ 74 (109)
.+|+++|.+|+|||||++.|.+.+. . .. .||.+.+..+..+ ++ ..+.+||++|.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~ 75 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGF 75 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCc
Confidence 4689999999999999999876653 2 23 5666665555544 33 48899999997
No 216
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.79 E-value=4e-09 Score=77.26 Aligned_cols=46 Identities=20% Similarity=0.122 Sum_probs=39.0
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~ 63 (109)
.+|+++ +++.+|.+ +|+|+||||||||+++|.+. ..++.|.+.+.|
T Consensus 60 ~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~--------~~~~~g~i~~~G 106 (347)
T 2obl_A 60 RAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNG--------ASADIIVLALIG 106 (347)
T ss_dssp HHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHH--------SCCSEEEEEEES
T ss_pred EEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCEEEEEEec
Confidence 478899 99988875 99999999999999999998 667777766644
No 217
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.79 E-value=1.9e-08 Score=78.48 Aligned_cols=81 Identities=19% Similarity=0.074 Sum_probs=62.8
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc--cc--------------------------------cCCcccCceEEEEECCE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL--VQ--------------------------------HQPTQHPTSEELSIGKI 64 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~--~~--------------------------------~~pt~~~~~g~i~~~~~ 64 (109)
+..+|+++|..|+|||||+++|.+... .. ..-|.......+..++.
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~ 245 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 245 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence 345799999999999999999986521 11 01133333456667788
Q ss_pred EEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCC
Q 033893 65 KFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEF 99 (109)
Q Consensus 65 ~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~ 99 (109)
.+.+||++|++++...+..+++++++++++.+.+.
T Consensus 246 ~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~ 280 (611)
T 3izq_1 246 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCST 280 (611)
T ss_dssp EEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSH
T ss_pred eEEEEECCCCcccHHHHHHHHhhcCceEEEEECCC
Confidence 99999999999988888899999999999998764
No 218
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.79 E-value=2e-09 Score=75.96 Aligned_cols=45 Identities=22% Similarity=0.232 Sum_probs=35.1
Q ss_pred HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCc-eEEEEECC
Q 033893 9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT-SEELSIGK 63 (109)
Q Consensus 9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~-~g~i~~~~ 63 (109)
.+|++++ ++++. ++|+|+|||||||+++++.+. ..++ .|+|.+++
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~--------~~~~~~G~I~~~g 61 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDY--------INQTKSYHIITIE 61 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHH--------HHHHCCCEEEEEE
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHh--------CCCCCCCEEEEcC
Confidence 3677887 66776 599999999999999999987 5554 57776544
No 219
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.78 E-value=1.2e-08 Score=80.56 Aligned_cols=80 Identities=15% Similarity=-0.004 Sum_probs=61.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcC--ccc-------------------ccCCcccCceEEEEECCEEEEEEEcCCcccccc
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDE--RLV-------------------QHQPTQHPTSEELSIGKIKFKAFDLGGHQIARR 79 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~--~~~-------------------~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~ 79 (109)
.+|+|+|..|+|||||++.|... .+. +..+|+......+.+++..+.+||++|..++..
T Consensus 13 ~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 92 (691)
T 1dar_A 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTI 92 (691)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchHH
Confidence 45799999999999999999721 110 223455555667788899999999999999999
Q ss_pred cHHhhhhcCCEEEEEEeCCCc
Q 033893 80 VWKDYYAKVIGSFKTKKIEFR 100 (109)
Q Consensus 80 ~~~~~~~~~~~~v~~~~~~~~ 100 (109)
.+..+++.+|+++++.+.+..
T Consensus 93 ~~~~~l~~aD~~ilVvDa~~g 113 (691)
T 1dar_A 93 EVERSMRVLDGAIVVFDSSQG 113 (691)
T ss_dssp HHHHHHHHCSEEEEEEETTTC
T ss_pred HHHHHHHHCCEEEEEEECCCC
Confidence 999999999999999987654
No 220
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.77 E-value=1.7e-09 Score=78.18 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=32.3
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
.+|+++++.++++++ +|+|+||||||||++.|.|.
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 578999999999986 99999999999999999975
No 221
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.76 E-value=3.9e-09 Score=73.21 Aligned_cols=35 Identities=14% Similarity=0.002 Sum_probs=23.1
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
.+|++++|+++++.+ +|+|+|||||||+++.|++.
T Consensus 13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ----------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999985 99999999999999999874
No 222
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.76 E-value=2.4e-09 Score=77.03 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=35.4
Q ss_pred hcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCE
Q 033893 13 SLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI 64 (109)
Q Consensus 13 ~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~ 64 (109)
.+++..+++++ +++|+|||||||+++.|++. ..++.|+|.+.+.
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~--------l~~~~g~V~l~g~ 136 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR--------LKNEGTKVLMAAG 136 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHH--------HHHTTCCEEEECC
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHH--------HHHcCCeEEEEee
Confidence 46677778886 99999999999999999987 5555677766553
No 223
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.75 E-value=2.7e-08 Score=75.55 Aligned_cols=80 Identities=15% Similarity=0.075 Sum_probs=60.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCc----c----cccC--CcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCC
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDER----L----VQHQ--PTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVI 89 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~----~----~~~~--pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~ 89 (109)
..+|+++|..++|||||+++|.+.. . .+.. .|.......+.+++..+.++|.+|.+++...+..+++++|
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD 98 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIID 98 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCC
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCC
Confidence 4568999999999999999999875 1 1122 2333334556678899999999999998888888999999
Q ss_pred EEEEEEeCCC
Q 033893 90 GSFKTKKIEF 99 (109)
Q Consensus 90 ~~v~~~~~~~ 99 (109)
+++.+.+.+.
T Consensus 99 ~~ilVvda~~ 108 (482)
T 1wb1_A 99 LALIVVDAKE 108 (482)
T ss_dssp EEEEEEETTT
T ss_pred EEEEEEecCC
Confidence 9999998754
No 224
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.74 E-value=2.7e-09 Score=75.58 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=21.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCE
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI 64 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~ 64 (109)
.++|+|+||||||||+++|.|. ..++.|++.++|.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~--------~~~~~G~i~~~g~ 38 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS--------QVSRKASSWNREE 38 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--------HC-----------
T ss_pred EEEEECCCCCCHHHHHHHHhCC--------CCCCCCccccCCc
Confidence 5799999999999999999987 4455555555443
No 225
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.74 E-value=7.7e-08 Score=73.92 Aligned_cols=80 Identities=11% Similarity=0.014 Sum_probs=60.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcC--ccc----------------c-------cCCcccCceEEEEECCEEEEEEEcCCc
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDE--RLV----------------Q-------HQPTQHPTSEELSIGKIKFKAFDLGGH 74 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~--~~~----------------~-------~~pt~~~~~g~i~~~~~~i~~~d~~g~ 74 (109)
..+|+|+|..|+|||||++.|... .+. + ...|.......+.+++..+.+||++|+
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 346899999999999999999853 110 0 001222334456778899999999999
Q ss_pred ccccccHHhhhhcCCEEEEEEeCCC
Q 033893 75 QIARRVWKDYYAKVIGSFKTKKIEF 99 (109)
Q Consensus 75 ~~~r~~~~~~~~~~~~~v~~~~~~~ 99 (109)
.++...+..+++.+|+++.+.+.+.
T Consensus 93 ~df~~~~~~~l~~aD~~IlVvDa~~ 117 (529)
T 2h5e_A 93 EDFSEDTYRTLTAVDCCLMVIDAAK 117 (529)
T ss_dssp TTCCHHHHHGGGGCSEEEEEEETTT
T ss_pred hhHHHHHHHHHHHCCEEEEEEeCCc
Confidence 9988888899999999999998754
No 226
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.73 E-value=5.8e-08 Score=71.92 Aligned_cols=82 Identities=17% Similarity=0.084 Sum_probs=57.7
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcccccCC----cc-------------------cCceEEEEECCEEEEEEEcCCcc
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQP----TQ-------------------HPTSEELSIGKIKFKAFDLGGHQ 75 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~p----t~-------------------~~~~g~i~~~~~~i~~~d~~g~~ 75 (109)
+..+|+++|..|+|||||+++|.+........ +. ....+........+.++|.+|.+
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 45678999999999999999999743211000 00 00000001112688899999999
Q ss_pred cccccHHhhhhcCCEEEEEEeCCCc
Q 033893 76 IARRVWKDYYAKVIGSFKTKKIEFR 100 (109)
Q Consensus 76 ~~r~~~~~~~~~~~~~v~~~~~~~~ 100 (109)
++...+..+++++|+++.+.+.+..
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~~ 111 (403)
T 3sjy_A 87 VLMATMLSGAALMDGAILVVAANEP 111 (403)
T ss_dssp GGHHHHHHHHTTCSEEEEEEETTSC
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCC
Confidence 9999889999999999999987654
No 227
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.73 E-value=3.7e-09 Score=69.80 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=24.6
Q ss_pred hcCCcccccEE-EEEeCCCCcHHHHHHHH
Q 033893 13 SLGLWQKEAKI-LFLGLDNAGKTTLLHML 40 (109)
Q Consensus 13 ~v~~~~~~~~i-~lvG~~GsGKSTll~~l 40 (109)
+++|.++++++ +|+|+||||||||++++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHH
Confidence 46788999986 99999999999999943
No 228
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.73 E-value=4.1e-08 Score=74.38 Aligned_cols=82 Identities=17% Similarity=0.105 Sum_probs=60.8
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCc--cc------------------------------ccCC--cccCceEEEEECCE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDER--LV------------------------------QHQP--TQHPTSEELSIGKI 64 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~--~~------------------------------~~~p--t~~~~~g~i~~~~~ 64 (109)
+.-+|+++|..|+|||||+++|.+.. +. +..+ |.......+..++.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 44578999999999999999996431 10 1111 22222334555678
Q ss_pred EEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCc
Q 033893 65 KFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFR 100 (109)
Q Consensus 65 ~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~ 100 (109)
.+.+||++|.+++...+..+++++|+++++.+.+..
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g 147 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN 147 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC-
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCC
Confidence 999999999999999999999999999999998664
No 229
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.73 E-value=3.8e-08 Score=73.22 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=46.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cccC--CcccCceEEEEE---------------------CC---EEEEEEEcCCc
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQHQ--PTQHPTSEELSI---------------------GK---IKFKAFDLGGH 74 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~~~--pt~~~~~g~i~~---------------------~~---~~i~~~d~~g~ 74 (109)
+|+|+|.+|+|||||+++|.+.+. .... .|..+..|.+.+ ++ ..+.+||++|.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 689999999999999999998763 1222 244455564322 32 57889999997
Q ss_pred cc----ccccHH---hhhhcCCEEEEEEeCCCc
Q 033893 75 QI----ARRVWK---DYYAKVIGSFKTKKIEFR 100 (109)
Q Consensus 75 ~~----~r~~~~---~~~~~~~~~v~~~~~~~~ 100 (109)
.+ .+.+.. .+++++|+++.+.+.+..
T Consensus 82 ~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 82 VPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp -------------CCCSSTTCSEEEEEEETTCC
T ss_pred ccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 53 233333 457899999999998654
No 230
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.71 E-value=1.9e-08 Score=79.38 Aligned_cols=80 Identities=15% Similarity=0.047 Sum_probs=61.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcC--ccc-------------------ccCCcccCceEEEEECCEEEEEEEcCCcccccc
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDE--RLV-------------------QHQPTQHPTSEELSIGKIKFKAFDLGGHQIARR 79 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~--~~~-------------------~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~ 79 (109)
.+|+|+|..|+|||||++.|.+. .+. +..+|.......+.+++..+.++|++|..++..
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~ 90 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFTV 90 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchHH
Confidence 45799999999999999999841 111 112344445567888899999999999999888
Q ss_pred cHHhhhhcCCEEEEEEeCCCc
Q 033893 80 VWKDYYAKVIGSFKTKKIEFR 100 (109)
Q Consensus 80 ~~~~~~~~~~~~v~~~~~~~~ 100 (109)
.+..+++.+|+++.+.+.+..
T Consensus 91 ~~~~~l~~aD~~llVvDa~~g 111 (693)
T 2xex_A 91 EVERSLRVLDGAVTVLDAQSG 111 (693)
T ss_dssp HHHHHHHHCSEEEEEEETTTB
T ss_pred HHHHHHHHCCEEEEEECCCCC
Confidence 899999999999999987654
No 231
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.71 E-value=3.6e-09 Score=77.07 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=31.7
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
.+++++++..+++.+ +|+|+||||||||+++|.+.
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 478899999988885 99999999999999999875
No 232
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.71 E-value=2.6e-09 Score=80.89 Aligned_cols=46 Identities=22% Similarity=0.272 Sum_probs=37.9
Q ss_pred HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceE-E-EEECC
Q 033893 10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSE-E-LSIGK 63 (109)
Q Consensus 10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g-~-i~~~~ 63 (109)
.+.++++.+++|+ ++|+|+||||||||+++|+|. ..++.| + |.+++
T Consensus 127 ~y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl--------~~p~~G~~pI~vdg 175 (460)
T 2npi_A 127 MLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY--------ALKFNAYQPLYINL 175 (460)
T ss_dssp HHHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHT--------THHHHCCCCEEEEC
T ss_pred hhhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCc--------ccccCCceeEEEcC
Confidence 3457888888887 599999999999999999998 666677 6 77654
No 233
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.70 E-value=7.8e-08 Score=71.22 Aligned_cols=78 Identities=19% Similarity=0.142 Sum_probs=58.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc-cc--cCCcccCceEEEEECCEEEEEEEcCCcccc----ccc---HHhhhhcCCEE
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL-VQ--HQPTQHPTSEELSIGKIKFKAFDLGGHQIA----RRV---WKDYYAKVIGS 91 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~-~~--~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~----r~~---~~~~~~~~~~~ 91 (109)
+|+|+|.+++|||||+++|++.+. .. ...|..+..|.+.+++..+.+.|++|.-+. +.+ .-...+++|.+
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~i 153 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLL 153 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCcc
Confidence 689999999999999999998753 22 223566788999999999999999884321 111 12456789999
Q ss_pred EEEEeCCC
Q 033893 92 FKTKKIEF 99 (109)
Q Consensus 92 v~~~~~~~ 99 (109)
+.+.|.+.
T Consensus 154 l~vvD~~~ 161 (376)
T 4a9a_A 154 FIILDVNK 161 (376)
T ss_dssp EEEEETTS
T ss_pred ccccccCc
Confidence 99988754
No 234
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.70 E-value=3.8e-09 Score=81.25 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=29.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
++.+++ .+++|++ +|+|+||||||||+++|+|.
T Consensus 37 ~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 37 VLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred cccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 466777 7888886 99999999999999999998
No 235
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.70 E-value=1.1e-09 Score=84.39 Aligned_cols=81 Identities=16% Similarity=0.092 Sum_probs=62.7
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc-cccCCccc--CceEEEEE-CCEEEEEEEcCCcccccccHHhhhhcCCEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL-VQHQPTQH--PTSEELSI-GKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKT 94 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~-~~~~pt~~--~~~g~i~~-~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~ 94 (109)
++.+|+++|..|+|||||+++|.+.++ ....|+.. +....+.. ++..+.+||++|++.+..++..+++.+|+++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV 82 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV 82 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence 355789999999999999999997765 23334333 33334444 456788999999999999999999999999999
Q ss_pred EeCCC
Q 033893 95 KKIEF 99 (109)
Q Consensus 95 ~~~~~ 99 (109)
.+.+.
T Consensus 83 VDa~d 87 (537)
T 3izy_P 83 VAADD 87 (537)
T ss_dssp CBSSS
T ss_pred EECCC
Confidence 98754
No 236
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.69 E-value=1.8e-08 Score=72.22 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=36.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC-cccc-cC--------CcccCceEEEEEC--C--EEEEEEEcCCc-------cccccc
Q 033893 22 KILFLGLDNAGKTTLLHMLKDE-RLVQ-HQ--------PTQHPTSEELSIG--K--IKFKAFDLGGH-------QIARRV 80 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~-~~~~-~~--------pt~~~~~g~i~~~--~--~~i~~~d~~g~-------~~~r~~ 80 (109)
+|+|+|+||||||||+++|.+. .+.. .. ++.....-.+... + ..+.+||..|. ++++.+
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l 99 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTI 99 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTTH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHH
Confidence 4699999999999999999876 3322 11 2222111112222 2 57889999887 566666
Q ss_pred HH-------hhhhcCC
Q 033893 81 WK-------DYYAKVI 89 (109)
Q Consensus 81 ~~-------~~~~~~~ 89 (109)
.. .|+++..
T Consensus 100 ~~~l~~~~~~~~~~~s 115 (301)
T 2qnr_A 100 ISYIDEQFERYLHDES 115 (301)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhC
Confidence 66 7776654
No 237
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.69 E-value=5.2e-09 Score=77.09 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=35.3
Q ss_pred hcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCE
Q 033893 13 SLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKI 64 (109)
Q Consensus 13 ~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~ 64 (109)
.+++..+++++ +|+|+|||||||+++.|++. ..+..|+|.+.+.
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~--------l~~~~G~V~l~g~ 193 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR--------LKNEGTKVLMAAG 193 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH--------HHHTTCCEEEECC
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhh--------ccccCCEEEEecc
Confidence 46777778886 99999999999999999987 5555677766554
No 238
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.69 E-value=7e-08 Score=72.43 Aligned_cols=80 Identities=15% Similarity=0.077 Sum_probs=59.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCc--cc------------------------------cc--CCcccCceEEEEECCEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDER--LV------------------------------QH--QPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~--~~------------------------------~~--~pt~~~~~g~i~~~~~~i 66 (109)
-+|+++|..++|||||+++|.+.. +. +. ..|.......+..++..+
T Consensus 18 ~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~~ 97 (439)
T 3j2k_7 18 VNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHF 97 (439)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeEE
Confidence 468999999999999999994321 10 01 112222334455678899
Q ss_pred EEEEcCCcccccccHHhhhhcCCEEEEEEeCCCc
Q 033893 67 KAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFR 100 (109)
Q Consensus 67 ~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~ 100 (109)
.++|++|++++...+..+++++|+++++.+.+..
T Consensus 98 ~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g 131 (439)
T 3j2k_7 98 TILDAPGHKSFVPNMIGGASQADLAVLVISARKG 131 (439)
T ss_pred EEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC
Confidence 9999999999988888999999999999987653
No 239
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.69 E-value=2.3e-08 Score=73.65 Aligned_cols=70 Identities=10% Similarity=-0.005 Sum_probs=55.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEe
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKK 96 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~ 96 (109)
.|+++|..++|||||+++|.. ..+|.......+..++..+.+||.+|.+++......+++.+|+++++.+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~-----~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK-----KGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE-----EEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHh-----CCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 689999999999999999981 1223333344555567889999999999887766778899999999998
No 240
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.68 E-value=7.4e-08 Score=72.65 Aligned_cols=80 Identities=13% Similarity=0.029 Sum_probs=61.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcC--ccc--------------------------------ccCCcccCceEEEEECCEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDE--RLV--------------------------------QHQPTQHPTSEELSIGKIK 65 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~--~~~--------------------------------~~~pt~~~~~g~i~~~~~~ 65 (109)
.-+|+++|..++|||||+++|.+. .+. +...|.......+..++..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 356899999999999999999753 111 0122333334455667889
Q ss_pred EEEEEcCCcccccccHHhhhhcCCEEEEEEeCCC
Q 033893 66 FKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEF 99 (109)
Q Consensus 66 i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~ 99 (109)
+.+||.+|++++...+..+++++|+++++.+.+.
T Consensus 87 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~ 120 (458)
T 1f60_A 87 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV 120 (458)
T ss_dssp EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSH
T ss_pred EEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCc
Confidence 9999999999988888889999999999998764
No 241
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.68 E-value=1.4e-08 Score=74.59 Aligned_cols=71 Identities=15% Similarity=0.198 Sum_probs=39.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCc-cc-ccC--------CcccCceEEE--EECC--EEEEEEEcCCc-------ccccc
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDER-LV-QHQ--------PTQHPTSEEL--SIGK--IKFKAFDLGGH-------QIARR 79 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~-~~-~~~--------pt~~~~~g~i--~~~~--~~i~~~d~~g~-------~~~r~ 79 (109)
.+|+|+|++|+|||||++.|.+.. +. ... ||.......+ ..++ ..+.+||++|. +.++.
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~ 117 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT 117 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHH
Confidence 357999999999999999987654 22 221 3333322222 2234 36889999998 77788
Q ss_pred cHH-------hhhhcCCEE
Q 033893 80 VWK-------DYYAKVIGS 91 (109)
Q Consensus 80 ~~~-------~~~~~~~~~ 91 (109)
++. .|++.++++
T Consensus 118 i~~~i~~~~~~yl~~~~~~ 136 (361)
T 2qag_A 118 IISYIDEQFERYLHDESGL 136 (361)
T ss_dssp THHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 887 888876543
No 242
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.68 E-value=3.1e-09 Score=82.81 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=34.4
Q ss_pred HhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEE
Q 033893 12 ASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSI 61 (109)
Q Consensus 12 ~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~ 61 (109)
+.+++.+++|++ +|+|+||||||||+++|.|. ..++.|+|.+
T Consensus 373 ~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl--------~~p~~G~I~~ 415 (607)
T 3bk7_A 373 EVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGV--------EEPTEGKVEW 415 (607)
T ss_dssp EECCEEEETTCEEEEECCTTSSHHHHHHHHHTS--------SCCSBSCCCC
T ss_pred EecccccCCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEE
Confidence 344556778876 99999999999999999998 6677777765
No 243
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.67 E-value=2.7e-08 Score=80.01 Aligned_cols=81 Identities=15% Similarity=0.044 Sum_probs=61.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCc------------ccc-------cCCcccCceEEEEEC----------------CEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDER------------LVQ-------HQPTQHPTSEELSIG----------------KIK 65 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~------------~~~-------~~pt~~~~~g~i~~~----------------~~~ 65 (109)
-+|+|+|..|+|||||+++|.... +.+ ...|+......+.+. ++.
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 458999999999999999997531 110 112333333445453 688
Q ss_pred EEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc
Q 033893 66 FKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD 101 (109)
Q Consensus 66 i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~ 101 (109)
+.+||++|+.++...+..+++.+|+++++.|.+...
T Consensus 100 i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~ 135 (842)
T 1n0u_A 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV 135 (842)
T ss_dssp EEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBS
T ss_pred EEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCC
Confidence 999999999999999999999999999999986543
No 244
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.67 E-value=6.3e-09 Score=79.51 Aligned_cols=48 Identities=10% Similarity=-0.039 Sum_probs=39.4
Q ss_pred HHHHhcCC-cccccEE-EEEeCCCCcHHHHHHH--HhcCcccccCCcccCceEEEEECCE
Q 033893 9 GILASLGL-WQKEAKI-LFLGLDNAGKTTLLHM--LKDERLVQHQPTQHPTSEELSIGKI 64 (109)
Q Consensus 9 ~~l~~v~~-~~~~~~i-~lvG~~GsGKSTll~~--l~g~~~~~~~pt~~~~~g~i~~~~~ 64 (109)
.+|+++++ .++++++ +|+|+||||||||+++ +.|. ..++.|.+.+++.
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl--------~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI--------IEFDEPGVFVTFE 77 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHH--------HHHCCCEEEEESS
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH--------HhCCCCEEEEEEe
Confidence 36899999 9999986 9999999999999999 5676 5556677777654
No 245
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.66 E-value=1e-07 Score=70.53 Aligned_cols=81 Identities=16% Similarity=0.072 Sum_probs=58.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcC--------ccccc----------CCcccCceEE--EEECCEEEEEEEcCCcccccc
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDE--------RLVQH----------QPTQHPTSEE--LSIGKIKFKAFDLGGHQIARR 79 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~--------~~~~~----------~pt~~~~~g~--i~~~~~~i~~~d~~g~~~~r~ 79 (109)
..+|+++|..++|||||+++|.+. .+... .+....+... +..++..+.+||++|.+++..
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 90 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIK 90 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHH
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHH
Confidence 346899999999999999999863 11110 1111122233 334568899999999999888
Q ss_pred cHHhhhhcCCEEEEEEeCCCc
Q 033893 80 VWKDYYAKVIGSFKTKKIEFR 100 (109)
Q Consensus 80 ~~~~~~~~~~~~v~~~~~~~~ 100 (109)
.+..+++++|+++++.+.+..
T Consensus 91 ~~~~~~~~aD~~ilVvda~~g 111 (405)
T 2c78_A 91 NMITGAAQMDGAILVVSAADG 111 (405)
T ss_dssp HHHHHHTTCSSEEEEEETTTC
T ss_pred HHHHHHHHCCEEEEEEECCCC
Confidence 888899999999999987553
No 246
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.66 E-value=4.6e-09 Score=80.78 Aligned_cols=42 Identities=24% Similarity=0.295 Sum_probs=34.2
Q ss_pred HhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEE
Q 033893 12 ASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSI 61 (109)
Q Consensus 12 ~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~ 61 (109)
+.+++.+++|++ +|+|+||||||||+++|.|. ..++.|+|.+
T Consensus 303 ~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl--------~~p~~G~i~~ 345 (538)
T 1yqt_A 303 EVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGV--------EEPTEGKIEW 345 (538)
T ss_dssp EECCEEEETTCEEEEECCTTSSHHHHHHHHHTS--------SCCSBCCCCC
T ss_pred EeCccccCCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCeEEEE
Confidence 344556678876 99999999999999999998 6677777765
No 247
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.66 E-value=5.6e-08 Score=73.47 Aligned_cols=81 Identities=16% Similarity=0.058 Sum_probs=49.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcC--ccc--------------------------------ccCCcccCceEEEEECCEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDE--RLV--------------------------------QHQPTQHPTSEELSIGKIK 65 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~--~~~--------------------------------~~~pt~~~~~g~i~~~~~~ 65 (109)
..+|+++|..++|||||+++|... .+. +..+|+......+..++..
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 346899999999999999998631 110 1122333333456667899
Q ss_pred EEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCc
Q 033893 66 FKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFR 100 (109)
Q Consensus 66 i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~ 100 (109)
+.+||.+|++++...+..+++++|+++++.+.+..
T Consensus 123 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g 157 (467)
T 1r5b_A 123 FSLLDAPGHKGYVTNMINGASQADIGVLVISARRG 157 (467)
T ss_dssp EEECCCCC-----------TTSCSEEEEEEECSTT
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcC
Confidence 99999999999988888889999999999997654
No 248
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.66 E-value=1.6e-07 Score=70.15 Aligned_cols=80 Identities=21% Similarity=0.159 Sum_probs=57.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCc---cccc----------CCc-----------------------ccCceEEEEECCE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDER---LVQH----------QPT-----------------------QHPTSEELSIGKI 64 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~---~~~~----------~pt-----------------------~~~~~g~i~~~~~ 64 (109)
.+|+++|..++|||||+++|.+.. +... .++ .......+..++.
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~ 104 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKR 104 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSE
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCc
Confidence 468999999999999999997542 1110 011 1111122344678
Q ss_pred EEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCc
Q 033893 65 KFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFR 100 (109)
Q Consensus 65 ~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~ 100 (109)
.+.+||++|++++...+..+++++|+++++.+.+..
T Consensus 105 ~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g 140 (434)
T 1zun_B 105 KFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG 140 (434)
T ss_dssp EEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC
T ss_pred eEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 899999999999888888899999999999997653
No 249
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.65 E-value=7.3e-09 Score=74.35 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=28.7
Q ss_pred cccEE-EEEeCCCCcHHHHHHHHhcCcccccCCccc--CceEEEEE
Q 033893 19 KEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQH--PTSEELSI 61 (109)
Q Consensus 19 ~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~--~~~g~i~~ 61 (109)
.++.+ +|+|+||||||||+++|.+. .. ++.|++.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~--------l~~~~~~G~i~v 115 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL--------LSRWPEHRRVEL 115 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH--------HTTSTTCCCEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--------HhhCCCCCeEEE
Confidence 56665 99999999999999999986 44 56677666
No 250
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.65 E-value=1.6e-08 Score=75.91 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=55.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCccc--ccCC--cccCceEEEEECCE-EEEEEEcCCccccccc-------HHhhhhcC
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLV--QHQP--TQHPTSEELSIGKI-KFKAFDLGGHQIARRV-------WKDYYAKV 88 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~--~~~p--t~~~~~g~i~~~~~-~i~~~d~~g~~~~r~~-------~~~~~~~~ 88 (109)
.+|+++|..|+|||||++++.+.++. +..| |..+....+.+.+. .+.+||++|.+++..+ +..++.++
T Consensus 35 ~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~a 114 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRA 114 (423)
T ss_dssp EEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcC
Confidence 46899999999999999999987652 2222 33445566777664 8999999998876544 45688899
Q ss_pred CEEEEEEeCC
Q 033893 89 IGSFKTKKIE 98 (109)
Q Consensus 89 ~~~v~~~~~~ 98 (109)
+++++++|.+
T Consensus 115 D~vllVvD~~ 124 (423)
T 3qq5_A 115 DCGILVTDSA 124 (423)
T ss_dssp SEEEEECSSS
T ss_pred CEEEEEEeCC
Confidence 9999999873
No 251
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.63 E-value=7.6e-09 Score=70.91 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=21.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHh-cC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLK-DE 43 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~-g~ 43 (109)
...++++.++++++ +|+|+|||||||++++|. +.
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 56789999999986 999999999999999999 75
No 252
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.63 E-value=7.2e-09 Score=80.80 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=29.3
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
+|.+++ .+++|++ +|+|+||||||||+++|+|.
T Consensus 107 ~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 107 VLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCC
Confidence 466777 7788876 99999999999999999998
No 253
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.63 E-value=1.4e-08 Score=68.73 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=22.5
Q ss_pred CcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 16 LWQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 16 ~~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
.+++++++ +|+|+||||||||+++|.|.
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 36778886 99999999999999999986
No 254
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.62 E-value=5.3e-08 Score=72.07 Aligned_cols=80 Identities=18% Similarity=0.083 Sum_probs=57.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCc-------ccc------------cCCcccCceEEEEECCEEEEEEEcCCccccccc
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDER-------LVQ------------HQPTQHPTSEELSIGKIKFKAFDLGGHQIARRV 80 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~-------~~~------------~~pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~ 80 (109)
.-+|+++|..++|||||+++|.+.. +.. ...|.....-.+..++..+.+||.+|.+++...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 3468999999999999999998631 100 001111111123335688999999999988777
Q ss_pred HHhhhhcCCEEEEEEeCCC
Q 033893 81 WKDYYAKVIGSFKTKKIEF 99 (109)
Q Consensus 81 ~~~~~~~~~~~v~~~~~~~ 99 (109)
+..+++++|+++++.+.+.
T Consensus 83 ~~~~~~~aD~~ilVvda~~ 101 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAAND 101 (397)
T ss_dssp HHHTSSCCSEEEEEEETTT
T ss_pred HHhhHhhCCEEEEEEECCC
Confidence 7888999999999998765
No 255
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.62 E-value=4.5e-08 Score=64.76 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.0
Q ss_pred ccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 18 QKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 18 ~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
++++++ +|+|+|||||||++++|++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 556775 99999999999999999985
No 256
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.61 E-value=2.7e-08 Score=77.41 Aligned_cols=81 Identities=19% Similarity=0.115 Sum_probs=58.6
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcccccCC-cccCceEEEEE--------------------CCEEEEEEEcCCcccc
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQP-TQHPTSEELSI--------------------GKIKFKAFDLGGHQIA 77 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~p-t~~~~~g~i~~--------------------~~~~i~~~d~~g~~~~ 77 (109)
+..+|+++|..++|||||+++|.+..+....| ....+.|.... ....+.+||++|++.+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 45678999999999999999998765533332 11111111111 1125889999999999
Q ss_pred cccHHhhhhcCCEEEEEEeCCC
Q 033893 78 RRVWKDYYAKVIGSFKTKKIEF 99 (109)
Q Consensus 78 r~~~~~~~~~~~~~v~~~~~~~ 99 (109)
...+..+++.+|+++++.+.+.
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~ 105 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINE 105 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTT
T ss_pred HHHHHHHHhhCCEEEEEEECCC
Confidence 9998889999999999999865
No 257
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.60 E-value=4.6e-08 Score=66.15 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=33.5
Q ss_pred HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCccc---CceEEEEECCEE
Q 033893 10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQH---PTSEELSIGKIK 65 (109)
Q Consensus 10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~---~~~g~i~~~~~~ 65 (109)
+...+.-..++++ ++|+|+||||||||+++|.+. .. ...|.|..++..
T Consensus 11 ~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~--------~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 11 VLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA--------LSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp HHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH--------HHHTTCCEEEEESGGGB
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH--------HhhcCCceEEEecCCCc
Confidence 3344432235666 499999999999999999986 32 346777776643
No 258
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.59 E-value=1.1e-08 Score=80.21 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=26.6
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHH
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLL 37 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll 37 (109)
.+|++++|+++++++ +|+||||||||||+
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 368899999999986 99999999999997
No 259
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.59 E-value=1.2e-08 Score=78.05 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=34.3
Q ss_pred hcCCcccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC
Q 033893 13 SLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG 62 (109)
Q Consensus 13 ~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~ 62 (109)
++++.++++++ +|+|+|||||||+++.|++. ..+..|+|.+.
T Consensus 285 ~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl--------l~~~~G~V~l~ 327 (503)
T 2yhs_A 285 PLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ--------FEQQGKSVMLA 327 (503)
T ss_dssp CCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH--------HHHTTCCEEEE
T ss_pred CceeeccCCeEEEEECCCcccHHHHHHHHHHH--------hhhcCCeEEEe
Confidence 56788888886 99999999999999999987 55555666664
No 260
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.59 E-value=1.5e-08 Score=78.07 Aligned_cols=34 Identities=35% Similarity=0.456 Sum_probs=27.9
Q ss_pred ccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEE
Q 033893 18 QKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEEL 59 (109)
Q Consensus 18 ~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i 59 (109)
.++|++ +|+|+||||||||+++|+|. ..|+.|++
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl--------~~p~~G~i 56 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGE--------IIPNFGDP 56 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTS--------SCCCTTCT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCCCcc
Confidence 356776 99999999999999999998 55555554
No 261
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.58 E-value=7.1e-08 Score=74.40 Aligned_cols=79 Identities=18% Similarity=0.145 Sum_probs=54.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCccc----ccCCcccCce-------EEEEEC-----------------------C---
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLV----QHQPTQHPTS-------EELSIG-----------------------K--- 63 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~----~~~pt~~~~~-------g~i~~~-----------------------~--- 63 (109)
.+|+|+|..|+|||||++.|.+.++. ...|+..... +.+..+ +
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~~ 145 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMC 145 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccceE
Confidence 46899999999999999999988752 2333221100 011100 0
Q ss_pred --------EEEEEEEcCCccc-----------ccccHHhhhhcCCEEEEEEeCCC
Q 033893 64 --------IKFKAFDLGGHQI-----------ARRVWKDYYAKVIGSFKTKKIEF 99 (109)
Q Consensus 64 --------~~i~~~d~~g~~~-----------~r~~~~~~~~~~~~~v~~~~~~~ 99 (109)
..+.++|++|... +...+..++..+|+++.+.+.+.
T Consensus 146 ~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~ 200 (550)
T 2qpt_A 146 AQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHK 200 (550)
T ss_dssp EECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTS
T ss_pred EeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCc
Confidence 2477889999764 34567788999999999998755
No 262
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.58 E-value=2.1e-07 Score=67.81 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCC--cccccEEEEEeCCCCcHHHHHHHHhcCcc
Q 033893 5 DWFYGILASLGL--WQKEAKILFLGLDNAGKTTLLHMLKDERL 45 (109)
Q Consensus 5 ~~~~~~l~~v~~--~~~~~~i~lvG~~GsGKSTll~~l~g~~~ 45 (109)
+.+.+.|..++. ..+..+|+++|.+|||||||+++|.|.++
T Consensus 14 ~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 14 NRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp HHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred HHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCc
Confidence 445555555443 23456899999999999999999998875
No 263
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.57 E-value=1.6e-08 Score=77.44 Aligned_cols=47 Identities=30% Similarity=0.316 Sum_probs=37.7
Q ss_pred HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893 9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63 (109)
Q Consensus 9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~ 63 (109)
.+++.+++.++++. ++|+|+|||||||+++++.+. ..++.|.+.+++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~--------i~~~~giitied 295 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMF--------IPPDAKVVSIED 295 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG--------SCTTCCEEEEES
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh--------CCCCCCEEEEcC
Confidence 35667777777777 699999999999999999987 666667776654
No 264
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.56 E-value=1.6e-08 Score=72.44 Aligned_cols=33 Identities=27% Similarity=0.371 Sum_probs=24.0
Q ss_pred cE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEE
Q 033893 21 AK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSI 61 (109)
Q Consensus 21 ~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~ 61 (109)
++ ++++|+||||||||+++|.|. ..++.|+|.+
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~--------~~~~~G~i~~ 202 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPG--------LKLRVSEVSE 202 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTT--------CCCC------
T ss_pred CCeEEEECCCCCcHHHHHHHhccc--------ccccccceec
Confidence 45 599999999999999999998 6677788776
No 265
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.56 E-value=3e-08 Score=66.21 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=22.2
Q ss_pred CcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 16 LWQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 16 ~~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
+...++++ +|+|+|||||||++++|.+.
T Consensus 2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 2 NAMNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp ---CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcCCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 34456665 99999999999999999975
No 266
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.55 E-value=2e-07 Score=73.71 Aligned_cols=80 Identities=14% Similarity=-0.084 Sum_probs=60.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcC--ccc-------------------ccCCcccCceEEEEECC-------EEEEEEEcC
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDE--RLV-------------------QHQPTQHPTSEELSIGK-------IKFKAFDLG 72 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~--~~~-------------------~~~pt~~~~~g~i~~~~-------~~i~~~d~~ 72 (109)
.+|+|+|..|+|||||+..|... .+. +..+|+......+.+++ +.+.+||++
T Consensus 11 ~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTP 90 (704)
T 2rdo_7 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTP 90 (704)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCC
Confidence 45899999999999999999632 111 01123333334555666 899999999
Q ss_pred CcccccccHHhhhhcCCEEEEEEeCCCc
Q 033893 73 GHQIARRVWKDYYAKVIGSFKTKKIEFR 100 (109)
Q Consensus 73 g~~~~r~~~~~~~~~~~~~v~~~~~~~~ 100 (109)
|+.++...+..+++.+|+++++.+.+..
T Consensus 91 G~~df~~~~~~~l~~aD~aIlVvDa~~g 118 (704)
T 2rdo_7 91 GHVDFTIEVERSMRVLDGAVMVYCAVGG 118 (704)
T ss_pred CccchHHHHHHHHHHCCEEEEEEeCCCC
Confidence 9999888889999999999999987643
No 267
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.55 E-value=1.2e-08 Score=75.15 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=29.2
Q ss_pred HHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcC
Q 033893 10 ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 10 ~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~ 43 (109)
+++++++.+.++.++|+|+||||||||+++|.+.
T Consensus 50 ~l~~v~l~~~~G~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 50 TITQLELELGGGFCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp TEEEEEEECCSSEEEEEESHHHHHHHHTHHHHHH
T ss_pred ceeeEEEecCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4678889999996699999999999999998543
No 268
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.54 E-value=1.1e-08 Score=78.16 Aligned_cols=81 Identities=11% Similarity=0.066 Sum_probs=60.9
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCccc--CceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPTQH--PTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTK 95 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt~~--~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~ 95 (109)
++.+|+++|..++|||||+++|.+.++. ...+... .....+.+++..+.+||++|++.+...+..+++.+|+++++.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVV 82 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVV 82 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEe
Confidence 4557899999999999999999875542 2222222 222234456778899999999999988888899999999999
Q ss_pred eCCC
Q 033893 96 KIEF 99 (109)
Q Consensus 96 ~~~~ 99 (109)
+.+.
T Consensus 83 da~~ 86 (501)
T 1zo1_I 83 AADD 86 (501)
T ss_dssp ETTT
T ss_pred eccc
Confidence 8654
No 269
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.54 E-value=2.2e-08 Score=68.52 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=25.9
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
.+|+++ +++++ +|+|+||||||||+++|+|.
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 366665 56664 99999999999999999986
No 270
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.53 E-value=2.4e-08 Score=68.78 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=22.1
Q ss_pred ccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 18 QKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 18 ~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
-+++++ +|+||||||||||+++|.+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 456775 99999999999999999986
No 271
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.52 E-value=8.7e-08 Score=67.78 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=30.6
Q ss_pred HHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcC
Q 033893 9 GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~ 43 (109)
.+++++++..+++ ++|+||||||||||++++++.
T Consensus 34 ~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 34 DQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp HHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 4678888888888 999999999999999999986
No 272
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.51 E-value=1.9e-08 Score=66.93 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=27.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcccccCCcccCc---eEEEEECCEEEEEEE
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPT---SEELSIGKIKFKAFD 70 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~---~g~i~~~~~~i~~~d 70 (109)
.++|+|+||||||||++.|.+. ..+. .|.|.+++..+..+|
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~--------~~~~g~~~G~I~~dg~~i~~~~ 47 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI--------LRERGLRVAVVKRHAHGDFEID 47 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH--------HHHTTCCEEEEEC---------
T ss_pred EEEEECCCCCCHHHHHHHHHHH--------hhhcCCceEEEEEcCcccccCC
Confidence 4699999999999999999987 5444 799999988765343
No 273
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.51 E-value=6.7e-08 Score=75.27 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=30.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcccccCCcccC-ceEEEEECCEEEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHP-TSEELSIGKIKFKAFD 70 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~-~~g~i~~~~~~i~~~d 70 (109)
..++|+|+||||||||+++|.|. ..| +.|.|.+++.++....
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl--------~~P~~sG~vt~~g~~i~~~~ 88 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGV--------ALPRGSGIVTRCPLVLKLKK 88 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSC--------C-------CCCSCEEEEEEE
T ss_pred CeEEEECCCCChHHHHHHHHhCC--------CCCCCCCeEEEcCEEEEEec
Confidence 34999999999999999999998 555 6899999998875444
No 274
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.50 E-value=5.9e-07 Score=66.57 Aligned_cols=80 Identities=20% Similarity=0.128 Sum_probs=56.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcc----cccCC--cccCceEEEEE------------------C-----CEEEEEEE
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERL----VQHQP--TQHPTSEELSI------------------G-----KIKFKAFD 70 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~----~~~~p--t~~~~~g~i~~------------------~-----~~~i~~~d 70 (109)
..+|+++|..++|||||+++|.+... .+..+ |.........+ + ...+.++|
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 34679999999999999999996532 22333 33322222222 1 16789999
Q ss_pred cCCcccccccHHhhhhcCCEEEEEEeCCC
Q 033893 71 LGGHQIARRVWKDYYAKVIGSFKTKKIEF 99 (109)
Q Consensus 71 ~~g~~~~r~~~~~~~~~~~~~v~~~~~~~ 99 (109)
.+|.+++..........+|+++++.+.+.
T Consensus 90 tPGh~~f~~~~~~~~~~~D~~ilVvda~~ 118 (410)
T 1kk1_A 90 APGHEALMTTMLAGASLMDGAILVIAANE 118 (410)
T ss_dssp CSSHHHHHHHHHHCGGGCSEEEEEEETTS
T ss_pred CCChHHHHHHHHhhhhhCCEEEEEEECCC
Confidence 99998877666666778899999998763
No 275
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.49 E-value=2.7e-08 Score=77.64 Aligned_cols=35 Identities=23% Similarity=0.435 Sum_probs=28.7
Q ss_pred cccccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEE
Q 033893 17 WQKEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEEL 59 (109)
Q Consensus 17 ~~~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i 59 (109)
..++|++ +|+|+||||||||+++|+|. ..|+.|+|
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gl--------l~P~~G~i 134 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGK--------QKPNLGRF 134 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTS--------SCCCTTTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcC--------CCCCCceE
Confidence 3567775 99999999999999999998 56666654
No 276
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.49 E-value=5.5e-07 Score=66.78 Aligned_cols=81 Identities=16% Similarity=0.081 Sum_probs=55.4
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcc----cccCC--cccCceEEEEE---------------C--------CEEEEEE
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERL----VQHQP--TQHPTSEELSI---------------G--------KIKFKAF 69 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~----~~~~p--t~~~~~g~i~~---------------~--------~~~i~~~ 69 (109)
+.-+|+++|..++|||||+++|.+... .+..+ |.........+ + ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 345689999999999999999996532 22333 33322111111 1 1678999
Q ss_pred EcCCcccccccHHhhhhcCCEEEEEEeCCC
Q 033893 70 DLGGHQIARRVWKDYYAKVIGSFKTKKIEF 99 (109)
Q Consensus 70 d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~ 99 (109)
|.+|++++...+.....++|+++++.+.+.
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~ 116 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANE 116 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTS
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCC
Confidence 999999887766666778899999998763
No 277
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.49 E-value=4.8e-08 Score=71.95 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=24.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcccccCCccc-CceEEEEE
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQH-PTSEELSI 61 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~-~~~g~i~~ 61 (109)
..++|+|+||||||||+++|.|. .. +..|+|..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~--------~~~~~~G~I~~ 249 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL--------QNEILTNDVSN 249 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC--------SSCCCCC----
T ss_pred CEEEEECCCCccHHHHHHHHhcc--------ccccccCCccc
Confidence 34699999999999999999987 44 55555554
No 278
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.48 E-value=2.5e-07 Score=73.08 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=55.9
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCccc--ccCCcccCc---------eEEEEE--------------------CC----
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLV--QHQPTQHPT---------SEELSI--------------------GK---- 63 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~--~~~pt~~~~---------~g~i~~--------------------~~---- 63 (109)
+..+|+++|..|+|||||+++|.|.++. ...|+.... ..++.+ ++
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 4557899999999999999999988652 233433100 001111 00
Q ss_pred --------------------------EEEEEEEcCCccc---ccccHHhhhhcCCEEEEEEeCCCc
Q 033893 64 --------------------------IKFKAFDLGGHQI---ARRVWKDYYAKVIGSFKTKKIEFR 100 (109)
Q Consensus 64 --------------------------~~i~~~d~~g~~~---~r~~~~~~~~~~~~~v~~~~~~~~ 100 (109)
..+.++|++|... ....+..|+.++|+++.+.+.+..
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~ 213 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQP 213 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTST
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCc
Confidence 2477889999654 345667899999999999987543
No 279
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.48 E-value=3.3e-08 Score=77.15 Aligned_cols=33 Identities=30% Similarity=0.500 Sum_probs=28.4
Q ss_pred HHhcCCccccc-----EE-EEEeCCCCcHHHHHHHHhcC
Q 033893 11 LASLGLWQKEA-----KI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 11 l~~v~~~~~~~-----~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
++++++++.++ ++ +|+|+||||||||+++|.|.
T Consensus 363 l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTS
T ss_pred cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcC
Confidence 45677777777 54 99999999999999999998
No 280
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.46 E-value=4.3e-08 Score=69.41 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=31.3
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
..|+++++.++++++ +|+|+||||||||++.+++.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 357888888999986 99999999999999999986
No 281
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.46 E-value=1.2e-07 Score=64.03 Aligned_cols=27 Identities=30% Similarity=0.223 Sum_probs=24.3
Q ss_pred cccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 17 WQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 17 ~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
.++++++ +|+|+||||||||++++++.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5778886 99999999999999999974
No 282
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.45 E-value=6.9e-08 Score=72.33 Aligned_cols=45 Identities=20% Similarity=0.191 Sum_probs=32.0
Q ss_pred HHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEEC
Q 033893 9 GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIG 62 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~ 62 (109)
.+|+++ +..+.+-++|+|+|||||||+++++.+. ..+..|+|.+.
T Consensus 157 ~~L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~--------l~~~~g~I~~~ 201 (418)
T 1p9r_A 157 DNFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQE--------LNSSERNILTV 201 (418)
T ss_dssp HHHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHH--------HCCTTSCEEEE
T ss_pred HHHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhh--------cCCCCCEEEEe
Confidence 456676 4433344699999999999999999986 44445555543
No 283
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.45 E-value=4.8e-08 Score=73.42 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=30.5
Q ss_pred HHhcCCcccccE---EEEEeCCCCcHHHHHHHHhcCcc
Q 033893 11 LASLGLWQKEAK---ILFLGLDNAGKTTLLHMLKDERL 45 (109)
Q Consensus 11 l~~v~~~~~~~~---i~lvG~~GsGKSTll~~l~g~~~ 45 (109)
|+++++.+++|. ++|+|+||||||||+++|.|..+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc
Confidence 788899998886 69999999999999999998754
No 284
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.43 E-value=5.6e-08 Score=70.69 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=31.0
Q ss_pred cccEE-EEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEE
Q 033893 19 KEAKI-LFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIK 65 (109)
Q Consensus 19 ~~~~i-~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~ 65 (109)
+++++ +++|+|||||||+++.|++. ..+..|+|.+.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~--------l~~~~g~V~l~g~D 166 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW--------LKNHGFSVVIAASD 166 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH--------HHHTTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--------HHhcCCEEEEEeec
Confidence 45675 99999999999999999987 55666777665543
No 285
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.42 E-value=2.3e-07 Score=69.23 Aligned_cols=47 Identities=21% Similarity=0.415 Sum_probs=41.9
Q ss_pred cCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCC
Q 033893 53 HPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEF 99 (109)
Q Consensus 53 ~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~ 99 (109)
+....++.+++..+.+||++|++++|.+|..||+++++++++++++.
T Consensus 206 Gi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ 252 (402)
T 1azs_C 206 GIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSS 252 (402)
T ss_dssp SEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTG
T ss_pred eeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcc
Confidence 33444677889999999999999999999999999999999999987
No 286
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.41 E-value=5.8e-08 Score=69.60 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.1
Q ss_pred cEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 21 AKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 21 ~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
+++ +++|+||||||||+++|. .
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-S
T ss_pred CcEEEEECCCCCCHHHHHHHHH-H
Confidence 554 999999999999999999 7
No 287
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.40 E-value=1.4e-07 Score=62.83 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~ 43 (109)
+++|+|+||||||||+++|.|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999976
No 288
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.40 E-value=4.7e-08 Score=70.38 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=30.4
Q ss_pred ccE-EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEE
Q 033893 20 EAK-ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIK 65 (109)
Q Consensus 20 ~~~-i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~ 65 (109)
+++ ++|+|+|||||||+++.|++. ..++.|+|.+.+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl--------l~~~~g~V~l~g~D 139 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY--------YQNLGKKVMFCAGD 139 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH--------HHTTTCCEEEECCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH--------HHhcCCEEEEEeec
Confidence 455 599999999999999999987 66666777766543
No 289
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.40 E-value=4.6e-08 Score=79.76 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=31.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCc
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDER 44 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~ 44 (109)
+|++++|.+++|++ +|+|+||||||||+++|.++.
T Consensus 450 iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTC
T ss_pred eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999986 999999999999999999654
No 290
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.39 E-value=4.7e-08 Score=70.62 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=23.0
Q ss_pred CcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 16 LWQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 16 ~~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
+...++++ +|+|+||||||||+++|.+.
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccc
Confidence 34455665 99999999999999999987
No 291
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.38 E-value=4.1e-07 Score=70.88 Aligned_cols=79 Identities=18% Similarity=0.077 Sum_probs=52.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCc--cc------ccCC----------cccCceEEEEEC-----CEEEEEEEcCCccccc
Q 033893 22 KILFLGLDNAGKTTLLHMLKDER--LV------QHQP----------TQHPTSEELSIG-----KIKFKAFDLGGHQIAR 78 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~--~~------~~~p----------t~~~~~g~i~~~-----~~~i~~~d~~g~~~~r 78 (109)
+++|+|..++|||||+.+|.... +. ...+ |.......+.+. ++.+.+||++|..++.
T Consensus 6 nI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~ 85 (599)
T 3cb4_D 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFS 85 (599)
T ss_dssp EEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHH
Confidence 47999999999999999997421 11 0101 111112233332 3788999999999999
Q ss_pred ccHHhhhhcCCEEEEEEeCCCc
Q 033893 79 RVWKDYYAKVIGSFKTKKIEFR 100 (109)
Q Consensus 79 ~~~~~~~~~~~~~v~~~~~~~~ 100 (109)
..+..+++.+|+++++.|.+..
T Consensus 86 ~ev~~~l~~aD~aILVVDa~~g 107 (599)
T 3cb4_D 86 YEVSRSLAACEGALLVVDAGQG 107 (599)
T ss_dssp HHHHHHHHHCSEEEEEEETTTC
T ss_pred HHHHHHHHHCCEEEEEEECCCC
Confidence 9999999999999999997654
No 292
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.38 E-value=7.8e-08 Score=70.27 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=28.6
Q ss_pred HHhcCCcccc--cE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 11 LASLGLWQKE--AK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 11 l~~v~~~~~~--~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
...+++.+.+ ++ ++|+|+||||||||+++|+|.
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567888887 76 599999999999999999987
No 293
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.38 E-value=7.9e-07 Score=69.33 Aligned_cols=79 Identities=15% Similarity=0.065 Sum_probs=54.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC--cccc------cC----------CcccCceEEEEEC-----CEEEEEEEcCCccccc
Q 033893 22 KILFLGLDNAGKTTLLHMLKDE--RLVQ------HQ----------PTQHPTSEELSIG-----KIKFKAFDLGGHQIAR 78 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~--~~~~------~~----------pt~~~~~g~i~~~-----~~~i~~~d~~g~~~~r 78 (109)
+++|+|..++|||||+++|... .+.. .. .|.......+.+. ++.+.+||++|..++.
T Consensus 8 nI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~ 87 (600)
T 2ywe_A 8 NFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFS 87 (600)
T ss_dssp EEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHH
Confidence 4799999999999999999642 1110 00 1111122344342 2788899999999998
Q ss_pred ccHHhhhhcCCEEEEEEeCCCc
Q 033893 79 RVWKDYYAKVIGSFKTKKIEFR 100 (109)
Q Consensus 79 ~~~~~~~~~~~~~v~~~~~~~~ 100 (109)
..+..+++.+|+++++.|.+..
T Consensus 88 ~ev~r~l~~aD~aILVVDa~~g 109 (600)
T 2ywe_A 88 YEVSRALAACEGALLLIDASQG 109 (600)
T ss_dssp HHHHHHHHTCSEEEEEEETTTB
T ss_pred HHHHHHHHhCCEEEEEEECCCC
Confidence 8889999999999999997654
No 294
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.38 E-value=2.8e-07 Score=67.64 Aligned_cols=52 Identities=21% Similarity=0.402 Sum_probs=45.3
Q ss_pred CcccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc
Q 033893 50 PTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD 101 (109)
Q Consensus 50 pt~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~ 101 (109)
||.+....++.+++..+.+||++|++++|.+|.+||+++++++.+++++.++
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d 230 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 230 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECcccc
Confidence 3455555677888999999999999999999999999999999999998753
No 295
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.38 E-value=2.1e-07 Score=69.67 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCcc
Q 033893 22 KILFLGLDNAGKTTLLHMLKDERL 45 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~~ 45 (109)
+|+|+|+||||||||+++|.|..+
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 479999999999999999998865
No 296
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.36 E-value=1.2e-07 Score=64.86 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=22.6
Q ss_pred cccccEE-EEEeCCCCcHHHHHHHHh
Q 033893 17 WQKEAKI-LFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 17 ~~~~~~i-~lvG~~GsGKSTll~~l~ 41 (109)
.++++++ +|+|+||||||||++++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 5678886 999999999999999998
No 297
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.36 E-value=1.3e-07 Score=63.63 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=20.0
Q ss_pred ccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 20 EAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 20 ~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
+++ ++|+||||||||||++.|.+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 344 699999999999999999874
No 298
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.35 E-value=4.6e-08 Score=76.69 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=28.7
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHh
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~ 41 (109)
+|++++++++++++ +|+|+||||||||++++.
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 58899999999986 999999999999998653
No 299
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.34 E-value=1.9e-07 Score=67.38 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=23.3
Q ss_pred ccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 18 QKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 18 ~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
.+++.+ +|+|+||||||||+++|.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 567775 99999999999999999986
No 300
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=2.1e-07 Score=62.36 Aligned_cols=33 Identities=27% Similarity=0.221 Sum_probs=21.0
Q ss_pred HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhc
Q 033893 10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g 42 (109)
.++++++..++++ |+|+|++||||||+.+.|+.
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999998886 59999999999999999984
No 301
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.34 E-value=5.2e-08 Score=65.68 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~ 43 (109)
.++|+|+|||||||+++.+++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4699999999999999999986
No 302
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.34 E-value=2e-07 Score=61.25 Aligned_cols=31 Identities=10% Similarity=0.089 Sum_probs=26.0
Q ss_pred HhcCCcccccEEEEEeCCCCcHHHHHHHHhc
Q 033893 12 ASLGLWQKEAKILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 12 ~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g 42 (109)
+++++...++-.+|+|+||||||||+++|..
T Consensus 18 ~~~~~~~~~g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 18 KKVVIPFSKGFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SCEEEECCSSEEEEEECTTSSHHHHHHHHHH
T ss_pred ccEEEecCCCcEEEECCCCCCHHHHHHHHHH
Confidence 4566677778669999999999999999974
No 303
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.33 E-value=7e-08 Score=75.00 Aligned_cols=78 Identities=15% Similarity=0.043 Sum_probs=40.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhcCc--cc------------------------------ccCC--cccCceEEEEECCEEEE
Q 033893 22 KILFLGLDNAGKTTLLHMLKDER--LV------------------------------QHQP--TQHPTSEELSIGKIKFK 67 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~~--~~------------------------------~~~p--t~~~~~g~i~~~~~~i~ 67 (109)
+|+++|..++|||||+++|.+.. +. +..+ |.......+..++..+.
T Consensus 179 ~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i~ 258 (592)
T 3mca_A 179 HLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYE 258 (592)
T ss_dssp EEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------------
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEEE
Confidence 58999999999999999995321 00 0011 22222334455668889
Q ss_pred EEEcCCcccccccHHhhhhcCCEEEEEEeCCC
Q 033893 68 AFDLGGHQIARRVWKDYYAKVIGSFKTKKIEF 99 (109)
Q Consensus 68 ~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~ 99 (109)
++|++|++++...+..+++++|+++++.+.+.
T Consensus 259 iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 259 IGDAPGHRDFISGMIAGASSADFAVLVVDSSQ 290 (592)
T ss_dssp CCEEESSSEEEEECCC-------CCSEEEEEE
T ss_pred EEECCChHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 99999999988877888999999888887653
No 304
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.32 E-value=4.6e-07 Score=62.63 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=29.7
Q ss_pred HHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcC
Q 033893 9 GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~ 43 (109)
.+++++++..+++ ++|+|++|+|||||++++.+.
T Consensus 39 ~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 39 SRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp HHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 4577788888777 999999999999999999975
No 305
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.31 E-value=1.9e-07 Score=62.05 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=19.4
Q ss_pred EEEEeCCCCcHHHHHHHHhcC
Q 033893 23 ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 23 i~lvG~~GsGKSTll~~l~g~ 43 (109)
++|+|||||||||++++|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 599999999999999999865
No 306
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.30 E-value=2.2e-07 Score=62.65 Aligned_cols=35 Identities=14% Similarity=-0.019 Sum_probs=28.7
Q ss_pred HHHHhcCC-cccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 9 GILASLGL-WQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 9 ~~l~~v~~-~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
..|+++.. .++++++ +|+|+||||||||++.+++.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 45677765 6778886 99999999999999999854
No 307
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.30 E-value=3.2e-07 Score=60.69 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.3
Q ss_pred cE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 21 AK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 21 ~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
++ ++|+||||||||||++.|.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 44 599999999999999999864
No 308
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.30 E-value=2e-07 Score=67.10 Aligned_cols=44 Identities=27% Similarity=0.274 Sum_probs=29.6
Q ss_pred EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 23 ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 23 i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
++|+|++||||||+++.|.+..-....-.+.++.|+|.+++..+
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l 50 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLI 50 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEE
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHH
Confidence 49999999999999999998621011001134567777766554
No 309
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.29 E-value=2.2e-07 Score=68.44 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=25.1
Q ss_pred HHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 11 LASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 11 l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
|++++ .+++. ++|+|+|||||||+++++.+.
T Consensus 128 l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 128 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp HHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45554 45565 599999999999999999986
No 310
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.29 E-value=4.6e-07 Score=65.83 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=28.5
Q ss_pred HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhc
Q 033893 9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g 42 (109)
.+++++++...++. ++++|++||||||+++.|.+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 46777887777776 59999999999999999964
No 311
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.29 E-value=5.9e-07 Score=63.03 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=29.8
Q ss_pred HHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcC
Q 033893 9 GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~ 43 (109)
.+++++++..+++ ++|+|++|+|||||++++.+.
T Consensus 63 ~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 63 SRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp HHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 4567788888877 999999999999999999975
No 312
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.28 E-value=4.6e-07 Score=60.86 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=21.3
Q ss_pred cccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 19 KEAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 19 ~~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
+++. ++|+|+|||||||+++.|.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4555 599999999999999999975
No 313
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.28 E-value=2.1e-08 Score=69.60 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=24.7
Q ss_pred EEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECCEEE
Q 033893 23 ILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 66 (109)
Q Consensus 23 i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~~~i 66 (109)
++|+||||||||||+++|++. ..++.|.|.+++.++
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~--------~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA--------LIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH--------HSCCTTTC-------
T ss_pred EEEECCCCCCHHHHHHHHhcc--------cccCCCeEEECCEEc
Confidence 489999999999999999987 555566666666544
No 314
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.26 E-value=6.2e-07 Score=59.70 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=22.0
Q ss_pred ccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 18 QKEAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 18 ~~~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
+.+++ ++|+|++||||||+++.|.+.
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45566 599999999999999999876
No 315
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.26 E-value=2.3e-07 Score=64.12 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHh---cC
Q 033893 20 EAKILFLGLDNAGKTTLLHMLK---DE 43 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~---g~ 43 (109)
+..++|+|+|||||||+++.|+ |.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3457999999999999999999 76
No 316
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.23 E-value=3e-06 Score=70.50 Aligned_cols=80 Identities=15% Similarity=0.076 Sum_probs=56.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCc-------ccc--------cCCccc--CceE--EEEECCEEEEEEEcCCcccccccH
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDER-------LVQ--------HQPTQH--PTSE--ELSIGKIKFKAFDLGGHQIARRVW 81 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~-------~~~--------~~pt~~--~~~g--~i~~~~~~i~~~d~~g~~~~r~~~ 81 (109)
.+|+++|..++|||||+++|.+.. +.. .+++.+ .+.. .+..++..+.+||++|++++....
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~m 376 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNM 376 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHH
Confidence 468999999999999999998631 000 011111 1112 233356889999999999988888
Q ss_pred HhhhhcCCEEEEEEeCCCc
Q 033893 82 KDYYAKVIGSFKTKKIEFR 100 (109)
Q Consensus 82 ~~~~~~~~~~v~~~~~~~~ 100 (109)
..+++++|+++++.+.+..
T Consensus 377 i~gas~AD~aILVVDAtdG 395 (1289)
T 3avx_A 377 ITGAAQMDGAILVVAATDG 395 (1289)
T ss_dssp HHTSCCCSEEEEEEETTTC
T ss_pred HHHHhhCCEEEEEEcCCcc
Confidence 8889999999999987653
No 317
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.22 E-value=5.3e-07 Score=60.42 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=24.2
Q ss_pred cCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 14 LGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 14 v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
..+..+++++ +|+|+|||||||+.+.|.+.
T Consensus 18 ~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 18 QRLLDQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp HHHHTSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3344466775 99999999999999999875
No 318
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.21 E-value=3.5e-07 Score=64.15 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=30.7
Q ss_pred HHHHhcCCcccc---cE-EEEEeCCCCcHHHHHHHHhc
Q 033893 9 GILASLGLWQKE---AK-ILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 9 ~~l~~v~~~~~~---~~-i~lvG~~GsGKSTll~~l~g 42 (109)
.+|+++++.+.+ ++ |+|+|++||||||+.+.|++
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 478999999988 76 69999999999999999986
No 319
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.20 E-value=7.7e-07 Score=65.86 Aligned_cols=37 Identities=30% Similarity=0.357 Sum_probs=32.2
Q ss_pred HHHHHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 7 FYGILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 7 ~~~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
...+++++++.++++++ +|+|++|||||||++.+.+.
T Consensus 155 ~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 155 VYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45678888889988875 99999999999999999863
No 320
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.17 E-value=8.6e-07 Score=59.39 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=21.0
Q ss_pred ccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 18 QKEAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 18 ~~~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
.++++ ++|+|+|||||||+++.|.+.
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 34565 599999999999999999864
No 321
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.15 E-value=1e-06 Score=64.79 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=36.8
Q ss_pred cccCceEEEEECCEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCc
Q 033893 51 TQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFR 100 (109)
Q Consensus 51 t~~~~~g~i~~~~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~ 100 (109)
|.+....++.+++..+.+||++|++.+|..|.+||.++++++.+++++.+
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~ 237 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEF 237 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccc
Confidence 34445556788899999999999999999999999999999999999873
No 322
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.15 E-value=1.2e-06 Score=57.95 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=18.6
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 033893 23 ILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 23 i~lvG~~GsGKSTll~~l~g 42 (109)
++|+|+|||||||+++.|++
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 49999999999999999985
No 323
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.15 E-value=1.1e-06 Score=59.34 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.6
Q ss_pred cccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 19 KEAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 19 ~~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
++++ ++|+|||||||||+++.|.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3566 599999999999999999865
No 324
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.14 E-value=6.7e-07 Score=65.68 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.2
Q ss_pred ccccEEEEEeCCCCcHHHHHHHHhcC
Q 033893 18 QKEAKILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 18 ~~~~~i~lvG~~GsGKSTll~~l~g~ 43 (109)
.+.+.++|+|+|||||||+++++.+.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34455699999999999999999876
No 325
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.12 E-value=5.8e-07 Score=72.07 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=28.5
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCc
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDER 44 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~ 44 (109)
+++++++. +++++ +|+|||||||||+++++++..
T Consensus 597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 45677887 67775 999999999999999998753
No 326
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.11 E-value=1.2e-06 Score=57.47 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=23.3
Q ss_pred CcccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 16 LWQKEAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 16 ~~~~~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
+...+++ ++|+|++|+|||||++++.+.
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4555666 599999999999999999864
No 327
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.11 E-value=4.4e-07 Score=73.69 Aligned_cols=34 Identities=12% Similarity=0.259 Sum_probs=29.0
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
+++++++..+++++ +|+|||||||||+++++.+.
T Consensus 662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred ecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 45678888888886 99999999999999998743
No 328
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.10 E-value=2.6e-06 Score=62.21 Aligned_cols=29 Identities=31% Similarity=0.233 Sum_probs=26.2
Q ss_pred CCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 15 GLWQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 15 ~~~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
+..++++++ .|+|+||||||||++.+++.
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 567889987 99999999999999999976
No 329
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.09 E-value=9e-07 Score=62.34 Aligned_cols=55 Identities=25% Similarity=0.340 Sum_probs=34.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcCcccccCCcccC--ceEEEEECCEEEEEEEcCCccc
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHP--TSEELSIGKIKFKAFDLGGHQI 76 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~--~~g~i~~~~~~i~~~d~~g~~~ 76 (109)
.+++++|.+|+|||||++.+.+.......++.+. ....+..+ ..+.+||++|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLE-NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECT-TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeC-CCEEEEECCCccc
Confidence 4789999999999999999998765433333222 22233333 3567889988553
No 330
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.09 E-value=4.4e-06 Score=60.95 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHhc
Q 033893 21 AKILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g 42 (109)
..|+|+|++|||||||++.|.+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3569999999999999999986
No 331
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.07 E-value=1.2e-06 Score=64.37 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=25.0
Q ss_pred HhcCCcccccEEEEEeCCCCcHHHHHHHHh
Q 033893 12 ASLGLWQKEAKILFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 12 ~~v~~~~~~~~i~lvG~~GsGKSTll~~l~ 41 (109)
+++++...++-.+|+|+||||||||+.+|.
T Consensus 15 ~~~~i~~~~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 15 KNVDIEFQSGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCSEEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEecCCCeEEEECCCCCCHHHHHHHHH
Confidence 455666777756999999999999999987
No 332
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.07 E-value=2e-06 Score=58.96 Aligned_cols=29 Identities=24% Similarity=0.127 Sum_probs=24.4
Q ss_pred CCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 15 GLWQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 15 ~~~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
..+.+++.+ +|.|++||||||+++.|.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345577775 99999999999999999874
No 333
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.04 E-value=2.5e-06 Score=55.36 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~ 43 (109)
.|+|+|++||||||+.+.|++.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999999999874
No 334
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.03 E-value=3.4e-06 Score=55.00 Aligned_cols=25 Identities=12% Similarity=0.444 Sum_probs=21.0
Q ss_pred cccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 19 KEAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 19 ~~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
.+++ ++|+|++||||||+.+.|.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3455 599999999999999999753
No 335
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.03 E-value=2.7e-06 Score=57.81 Aligned_cols=25 Identities=16% Similarity=0.466 Sum_probs=21.1
Q ss_pred cccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 19 KEAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 19 ~~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
-+++ ++|+||||||||||++.|.+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3455 599999999999999999854
No 336
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.02 E-value=9.7e-07 Score=61.47 Aligned_cols=22 Identities=41% Similarity=0.345 Sum_probs=19.7
Q ss_pred ccE-EEEEeCCCCcHHHHHHHHh
Q 033893 20 EAK-ILFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 20 ~~~-i~lvG~~GsGKSTll~~l~ 41 (109)
++. |+|+|++||||||+++.|+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 444 6999999999999999999
No 337
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.00 E-value=5.7e-06 Score=55.49 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=22.0
Q ss_pred ccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 18 QKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 18 ~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
.+++.+ +|+|++||||||+++.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455664 99999999999999999864
No 338
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.00 E-value=1.4e-06 Score=70.91 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=27.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHH
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHML 40 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l 40 (109)
+++++++...++++ +|+|||||||||+++++
T Consensus 651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CCEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred ecccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 35678888888886 99999999999999999
No 339
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.99 E-value=2.6e-06 Score=55.09 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=20.7
Q ss_pred cccccEEEEEeCCCCcHHHHHHHHh
Q 033893 17 WQKEAKILFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 17 ~~~~~~i~lvG~~GsGKSTll~~l~ 41 (109)
...++-.+|+|+|||||||++.+|.
T Consensus 20 ~f~~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 20 EFKEGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp ECCSEEEEEECCTTSSHHHHHHHHH
T ss_pred EcCCCeEEEECCCCCCHHHHHHHHH
Confidence 3445556999999999999999886
No 340
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.98 E-value=1.4e-06 Score=69.57 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=26.1
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcCc
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDER 44 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~~ 44 (109)
+++++++. +++ +|+|||||||||+++++++..
T Consensus 568 vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 568 VPNDLEMA---HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred EeeeccCC---CcEEEEECCCCCChHHHHHHHHhhh
Confidence 34567666 665 999999999999999998763
No 341
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.97 E-value=2.4e-06 Score=62.78 Aligned_cols=32 Identities=34% Similarity=0.199 Sum_probs=27.1
Q ss_pred HHhcCCcccccEEEEEeCCCCcHHHHHHHHhc
Q 033893 11 LASLGLWQKEAKILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 11 l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g 42 (109)
++++++.+.++-++|+|+|||||||++.++.+
T Consensus 17 ~~~~~~~~~~g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 17 LAPGTLNFPEGVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CCSEEEECCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeeeEEEEcCCeEEEECCCCCChhHHHHHHHH
Confidence 45677778888559999999999999999974
No 342
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.96 E-value=2.7e-06 Score=62.41 Aligned_cols=36 Identities=25% Similarity=0.508 Sum_probs=33.0
Q ss_pred CEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCC
Q 033893 63 KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIE 98 (109)
Q Consensus 63 ~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~ 98 (109)
...+.+||++|++++|.+|..||+++++++.+++++
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis 217 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAIS 217 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGG
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECc
Confidence 478999999999999999999999999999999987
No 343
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.94 E-value=6.7e-06 Score=55.81 Aligned_cols=27 Identities=26% Similarity=0.253 Sum_probs=23.6
Q ss_pred cccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 17 WQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 17 ~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
.++++++ +|+|+||||||||++.+++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4677776 99999999999999999973
No 344
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.92 E-value=7.5e-06 Score=54.79 Aligned_cols=33 Identities=27% Similarity=0.028 Sum_probs=26.4
Q ss_pred HHHhcCC-cccccEE-EEEeCCCCcHHHHHHHHhc
Q 033893 10 ILASLGL-WQKEAKI-LFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 10 ~l~~v~~-~~~~~~i-~lvG~~GsGKSTll~~l~g 42 (109)
.|+.+.. .++++++ +|+|++||||||+++.+++
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4555533 5777876 9999999999999999975
No 345
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.92 E-value=8.8e-06 Score=62.53 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=35.3
Q ss_pred HHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEECC
Q 033893 10 ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK 63 (109)
Q Consensus 10 ~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~~~ 63 (109)
++.++++..+...++|+||+|+||||+++++.+. ..+..+.+.+++
T Consensus 98 ~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--------l~~~~~~i~~~~ 143 (543)
T 3m6a_A 98 AVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--------LGRKFVRISLGG 143 (543)
T ss_dssp HHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--------HTCEEEEECCCC
T ss_pred HHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--------cCCCeEEEEecc
Confidence 5667777775445799999999999999999976 555566666555
No 346
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.92 E-value=1.4e-05 Score=56.81 Aligned_cols=55 Identities=22% Similarity=0.463 Sum_probs=33.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCcccc--cCCcccCceEEEEECCEEEEEEEcCCcc
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDERLVQ--HQPTQHPTSEELSIGKIKFKAFDLGGHQ 75 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~~~~--~~pt~~~~~g~i~~~~~~i~~~d~~g~~ 75 (109)
+.+++++|.+|+|||||++.|.+.+... ..|....+...+.++ ..+.++|++|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtpG~~ 176 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVG-KELELLDTPGIL 176 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEET-TTEEEEECCCCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeC-CCEEEEECcCcC
Confidence 3468999999999999999999876432 222111122233443 356678998853
No 347
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.89 E-value=2.7e-06 Score=69.82 Aligned_cols=33 Identities=27% Similarity=0.250 Sum_probs=27.4
Q ss_pred HHHhcCCcccc-------cEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 10 ILASLGLWQKE-------AKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 10 ~l~~v~~~~~~-------~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
+++++++...+ +++ +|+|||||||||+++++ |.
T Consensus 771 v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 771 IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HH
T ss_pred EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HH
Confidence 46777777765 665 99999999999999999 54
No 348
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.89 E-value=4.1e-06 Score=64.71 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=23.4
Q ss_pred cccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 17 WQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 17 ~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
..+++.+ +|+|+||||||||+++|++.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHh
Confidence 4556765 99999999999999999976
No 349
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.88 E-value=5.1e-06 Score=53.71 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.9
Q ss_pred ccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 20 EAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 20 ~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
+++ ++|+|++|+|||||++++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 444 699999999999999999874
No 350
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.87 E-value=4.4e-06 Score=60.46 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=26.7
Q ss_pred HhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 12 ASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 12 ~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
.++++..+++++ +++|++|+||||++..|++.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456677777775 99999999999999999865
No 351
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.86 E-value=1.8e-06 Score=70.52 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=28.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHh
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~ 41 (109)
+|+++++.++.|++ +|+|+||||||||++.+.
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 57899999999986 999999999999999853
No 352
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.84 E-value=2.9e-06 Score=61.21 Aligned_cols=22 Identities=41% Similarity=0.665 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~ 43 (109)
.++|+||+|+|||||++++++.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3799999999999999999975
No 353
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.84 E-value=9.4e-06 Score=54.77 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcC
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~ 43 (109)
..|+|+|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999999863
No 354
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.84 E-value=5e-06 Score=60.32 Aligned_cols=22 Identities=32% Similarity=0.235 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~ 43 (109)
-++|+|+|||||||++++|.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3599999999999999999875
No 355
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.83 E-value=1.1e-05 Score=53.71 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~ 43 (109)
.|+|+|++||||||+.+.|++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 4799999999999999999873
No 356
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.83 E-value=5.3e-06 Score=59.75 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=23.6
Q ss_pred CCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 15 GLWQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 15 ~~~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
++..+++++ +++|++||||||++..|++.
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 334456665 99999999999999999875
No 357
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.83 E-value=1.1e-06 Score=70.81 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=29.2
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHH-Hhc
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHM-LKD 42 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~-l~g 42 (109)
+|+++++.++.|++ +|+|+||||||||++. |.+
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHH
Confidence 57899999999986 9999999999999996 553
No 358
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.83 E-value=1.5e-05 Score=53.25 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=23.0
Q ss_pred cccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 17 WQKEAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 17 ~~~~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
.++++. |+|+|++||||||+.+.|.+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 455566 599999999999999999975
No 359
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.82 E-value=5.9e-05 Score=58.75 Aligned_cols=65 Identities=22% Similarity=0.185 Sum_probs=41.9
Q ss_pred HHHHhcCCcccccEEEEEeCCCCcHHHHHHHHhcCccc-ccCCc-ccCceEEEEE-------CCEEEEEEEcCCcc
Q 033893 9 GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLV-QHQPT-QHPTSEELSI-------GKIKFKAFDLGGHQ 75 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~~~~-~~~pt-~~~~~g~i~~-------~~~~i~~~d~~g~~ 75 (109)
.+|..+ ..+..+|+|+|.+|+|||||++.|.|.... ...++ .+...|-..+ ++..+.+.|++|..
T Consensus 29 ~~L~~i--~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 29 KILSAI--TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp HHHHTC--CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred HHHHhc--cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 345554 334456799999999999999999987632 22222 2233333322 45678888998854
No 360
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.82 E-value=5.1e-06 Score=59.68 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=23.7
Q ss_pred cCCcccccEEEEEeCCCCcHHHHHHHHh
Q 033893 14 LGLWQKEAKILFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 14 v~~~~~~~~i~lvG~~GsGKSTll~~l~ 41 (109)
+++...++-.+|+|+||||||||+.+|.
T Consensus 18 ~~l~~~~g~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 18 SLIGFSDRVTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEECCSSEEEEECCTTTCSTHHHHHHH
T ss_pred eEEecCCCcEEEECCCCCcHHHHHHHHH
Confidence 4456667755999999999999999998
No 361
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.81 E-value=1.1e-05 Score=53.86 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~ 43 (109)
.|+|+|++||||||+.+.|++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 3699999999999999999864
No 362
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.81 E-value=6.1e-07 Score=67.64 Aligned_cols=81 Identities=16% Similarity=0.123 Sum_probs=45.9
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhcCcccccCCcccCceEEEEE---CC-EEEEEEEcCCc--ccccccH--------Hhh
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSI---GK-IKFKAFDLGGH--QIARRVW--------KDY 84 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g~~~~~~~pt~~~~~g~i~~---~~-~~i~~~d~~g~--~~~r~~~--------~~~ 84 (109)
.+..|+++|++||||||+.+.|+........++..++.+.+.. ++ ....+||..+. .+.+..| ..|
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~ 117 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF 117 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445799999999999999999854211222222222111100 11 23346787776 3345555 667
Q ss_pred hhcCCEEEEEEeCCC
Q 033893 85 YAKVIGSFKTKKIEF 99 (109)
Q Consensus 85 ~~~~~~~v~~~~~~~ 99 (109)
+....+.+++.|-+.
T Consensus 118 l~~~~G~~vV~D~tn 132 (469)
T 1bif_A 118 LSEEGGHVAVFDATN 132 (469)
T ss_dssp HHTTCCSEEEEESCC
T ss_pred HHhCCCCEEEEeCCC
Confidence 766666555555543
No 363
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.77 E-value=2.2e-06 Score=69.87 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=28.9
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHHHHHh
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~ 41 (109)
.|+++++.++.|++ +|+|+||||||||++.+.
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 47889999999986 999999999999999853
No 364
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.77 E-value=1.5e-05 Score=57.16 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=19.3
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 033893 23 ILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 23 i~lvG~~GsGKSTll~~l~g 42 (109)
+++.|++|+||||+++++.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999987
No 365
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.77 E-value=9.8e-06 Score=54.78 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=20.7
Q ss_pred cccccEEEEEeCCCCcHHHHHHHHh
Q 033893 17 WQKEAKILFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 17 ~~~~~~i~lvG~~GsGKSTll~~l~ 41 (109)
...++-.+|+|+|||||||++.+|.
T Consensus 20 ~f~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 20 EFKEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp ECCSEEEEEECCTTSSHHHHHHHHH
T ss_pred EeCCCeEEEEcCCCCCHHHHHHHHH
Confidence 3445556999999999999999885
No 366
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.74 E-value=1.7e-05 Score=53.17 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.0
Q ss_pred ccE-EEEEeCCCCcHHHHHHHHhc
Q 033893 20 EAK-ILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 20 ~~~-i~lvG~~GsGKSTll~~l~g 42 (109)
+++ ++|+|++||||||+.+.|..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 455 59999999999999999974
No 367
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.74 E-value=1.6e-05 Score=53.05 Aligned_cols=21 Identities=19% Similarity=0.544 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|+|++||||||+.+.|.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999974
No 368
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.72 E-value=1.9e-05 Score=53.09 Aligned_cols=20 Identities=40% Similarity=0.532 Sum_probs=18.3
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 033893 23 ILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 23 i~lvG~~GsGKSTll~~l~g 42 (109)
|+|+||||||||||++.|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 69999999999999999863
No 369
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.71 E-value=2.3e-05 Score=53.90 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=21.7
Q ss_pred HhcCCccc---ccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 12 ASLGLWQK---EAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 12 ~~v~~~~~---~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
.++++... .+. |++.|++||||||+++.|...
T Consensus 14 ~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 14 GTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp ------CCCCCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34444443 566 599999999999999999853
No 370
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.71 E-value=1.6e-05 Score=57.51 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=21.0
Q ss_pred CcccccEEEEEeCCCCcHHHHHHHHh
Q 033893 16 LWQKEAKILFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 16 ~~~~~~~i~lvG~~GsGKSTll~~l~ 41 (109)
+...++-.+|+|+|||||||++.+|.
T Consensus 19 i~f~~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 19 VEFKEGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHH
T ss_pred EcCCCCeEEEECCCCCCHHHHHHHHH
Confidence 33445556999999999999999874
No 371
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.69 E-value=0.00028 Score=51.25 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=19.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHh
Q 033893 21 AKILFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~ 41 (109)
..|+|+|.+|+||||+++.|.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~ 100 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALG 100 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457999999999999999986
No 372
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.69 E-value=2.2e-05 Score=50.45 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=18.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 369999999999999999974
No 373
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.68 E-value=1.8e-05 Score=55.46 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.4
Q ss_pred ccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 18 QKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 18 ~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
++++++ +|+|+||||||||++.+.+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 556775 99999999999999998863
No 374
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.68 E-value=2.7e-05 Score=50.91 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=20.6
Q ss_pred ccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 20 EAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 20 ~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
++. |+|+|++||||||+.+.|.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 455 599999999999999999863
No 375
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.66 E-value=6.8e-06 Score=66.81 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=25.8
Q ss_pred HHHhcCCcccccEE-EEEeCCCCcHHHHH
Q 033893 10 ILASLGLWQKEAKI-LFLGLDNAGKTTLL 37 (109)
Q Consensus 10 ~l~~v~~~~~~~~i-~lvG~~GsGKSTll 37 (109)
.|+++++.++.|++ +|+|+||||||||+
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhH
Confidence 57889999999986 99999999999997
No 376
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.66 E-value=1.8e-05 Score=58.88 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=21.4
Q ss_pred ccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 18 QKEAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 18 ~~~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
..++. ++|+|+||||||||+.+|.+.
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34445 499999999999999999854
No 377
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.66 E-value=2.9e-05 Score=51.24 Aligned_cols=30 Identities=30% Similarity=0.394 Sum_probs=22.5
Q ss_pred cCCcccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 14 LGLWQKEAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 14 v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
+++...++. |+|+|++||||||+.+.|+..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 455555555 699999999999999999753
No 378
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.64 E-value=2.7e-05 Score=59.51 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=26.3
Q ss_pred HHhcCCcccccEEEEEeCCCCcHHHHHHHHhcC
Q 033893 11 LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 11 l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~ 43 (109)
+.++++..+++ ++|+||+|+|||||++++.+.
T Consensus 56 ~~~lg~~ip~G-vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 56 FHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TTTTSCCCCSE-EEEECSSSSSHHHHHHHHHHH
T ss_pred hhhccCCCCce-EEEECCCCCCHHHHHHHHHHH
Confidence 34556666666 999999999999999999865
No 379
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.64 E-value=3e-05 Score=50.35 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
-|+|.|++||||||+.+.|..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 369999999999999999985
No 380
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.62 E-value=3.3e-05 Score=58.93 Aligned_cols=29 Identities=28% Similarity=0.265 Sum_probs=25.5
Q ss_pred CCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 15 GLWQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 15 ~~~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
+..+.++++ +|+|+||||||||++++.+.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 456788886 99999999999999999875
No 381
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.61 E-value=4.8e-05 Score=50.01 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=21.8
Q ss_pred cccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 17 WQKEAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 17 ~~~~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
...++. |+++|++||||||+.+.|+..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 344555 599999999999999999753
No 382
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.60 E-value=3.7e-05 Score=49.17 Aligned_cols=19 Identities=37% Similarity=0.711 Sum_probs=17.6
Q ss_pred EEEEeCCCCcHHHHHHHHh
Q 033893 23 ILFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 23 i~lvG~~GsGKSTll~~l~ 41 (109)
|+|.|++||||||+.+.|.
T Consensus 4 I~l~G~~GsGKsT~a~~L~ 22 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLLK 22 (179)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6999999999999999993
No 383
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.59 E-value=2.5e-05 Score=52.54 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=21.8
Q ss_pred ccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 18 QKEAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 18 ~~~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
.+++. |+|+|++||||||+.+.|.+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45566 599999999999999999854
No 384
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.57 E-value=5.3e-05 Score=51.33 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=23.8
Q ss_pred HHhc-CCcccccEE-EEEeCCCCcHHHHHHHHh
Q 033893 11 LASL-GLWQKEAKI-LFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 11 l~~v-~~~~~~~~i-~lvG~~GsGKSTll~~l~ 41 (109)
|+.+ .-.++++++ +|+|++||||||++..++
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3444 445778876 999999999999977664
No 385
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.57 E-value=4.5e-05 Score=49.34 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|.|++||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 369999999999999999986
No 386
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.56 E-value=2.9e-05 Score=60.22 Aligned_cols=35 Identities=14% Similarity=0.279 Sum_probs=28.8
Q ss_pred HHHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 9 GILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 9 ~~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
.+++.+++..+.++ ++|+|++|+||||++++|.+.
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHT
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 35566666666666 699999999999999999987
No 387
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.56 E-value=4.1e-05 Score=52.79 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~ 43 (109)
-++|+|++|+||||+++++.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4899999999999999999854
No 388
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.55 E-value=5.2e-05 Score=49.99 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|.|++||||||+.+.|+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 379999999999999999985
No 389
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.54 E-value=2.2e-05 Score=56.02 Aligned_cols=29 Identities=28% Similarity=0.228 Sum_probs=23.5
Q ss_pred hcCCcccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 13 SLGLWQKEAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 13 ~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
++++. +++ ++++|++|+||||++..+++.
T Consensus 92 ~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp CCCCC--SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred eeecC--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34555 555 599999999999999999875
No 390
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.53 E-value=0.00013 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=20.7
Q ss_pred cccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 19 KEAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 19 ~~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
+++. |+|+|++||||||+.+.|.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444 599999999999999998754
No 391
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.53 E-value=5.8e-05 Score=49.26 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=18.6
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 033893 23 ILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 23 i~lvG~~GsGKSTll~~l~g 42 (109)
|+|.|++||||||+.+.|..
T Consensus 4 I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 69999999999999999974
No 392
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.52 E-value=6.3e-05 Score=49.16 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=18.5
Q ss_pred EEEEEeCCCCcHHHHHHHHh
Q 033893 22 KILFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~ 41 (109)
.|+|+|++||||||+.+.|+
T Consensus 6 ~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36999999999999999997
No 393
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.52 E-value=0.00011 Score=52.20 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.2
Q ss_pred cccE-EEEEeCCCCcHHHHHHHHhc
Q 033893 19 KEAK-ILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 19 ~~~~-i~lvG~~GsGKSTll~~l~g 42 (109)
..+. ++|.|++||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455 59999999999999999974
No 394
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.52 E-value=5.6e-05 Score=49.33 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|.|++||||||+.+.|..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999999874
No 395
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.50 E-value=4.4e-05 Score=55.80 Aligned_cols=28 Identities=11% Similarity=0.280 Sum_probs=22.7
Q ss_pred cCCcccccEEEEEeCCCCcHHHHHHHHh
Q 033893 14 LGLWQKEAKILFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 14 v~~~~~~~~i~lvG~~GsGKSTll~~l~ 41 (109)
..+...++-.+|+|+|||||||++.+|.
T Consensus 19 ~~i~f~~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 19 SRIKFEKGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEECCSEEEEEEECTTSSHHHHHHHHH
T ss_pred eEEecCCCeEEEECCCCCCHHHHHHHHH
Confidence 3444556667999999999999999885
No 396
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.49 E-value=8.3e-05 Score=53.12 Aligned_cols=24 Identities=42% Similarity=0.524 Sum_probs=20.1
Q ss_pred ccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 20 EAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 20 ~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
+++ ++++|++||||||++..|++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 344 599999999999999998753
No 397
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.49 E-value=7.9e-05 Score=51.63 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=23.5
Q ss_pred HHHhcCCcccccE-EEEEeCCCCcHHHHHHHHhc
Q 033893 10 ILASLGLWQKEAK-ILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 10 ~l~~v~~~~~~~~-i~lvG~~GsGKSTll~~l~g 42 (109)
++.... ..+.+. ++|+|++||||||+.+.|..
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 333443 344444 59999999999999999975
No 398
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.49 E-value=8.1e-05 Score=48.75 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|.|++||||||+.+.|..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 369999999999999999874
No 399
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.48 E-value=6.4e-05 Score=49.90 Aligned_cols=22 Identities=36% Similarity=0.452 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~ 43 (109)
.++++|++||||||+++.+.+.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 4699999999999999998854
No 400
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.48 E-value=6.9e-05 Score=48.76 Aligned_cols=21 Identities=38% Similarity=0.700 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|+|++||||||+.+.|+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 479999999999999999975
No 401
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.45 E-value=3.2e-05 Score=51.59 Aligned_cols=20 Identities=45% Similarity=0.634 Sum_probs=18.5
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 033893 23 ILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 23 i~lvG~~GsGKSTll~~l~g 42 (109)
|+|.|++||||||+++.|..
T Consensus 3 I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999974
No 402
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.44 E-value=8.8e-05 Score=48.48 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|+|++||||||+.+.|+.
T Consensus 7 ~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999974
No 403
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.42 E-value=1.7e-05 Score=60.42 Aligned_cols=31 Identities=26% Similarity=0.304 Sum_probs=25.9
Q ss_pred HHhcCCcccccEEEEEeCCCCcHHHHHHHHh
Q 033893 11 LASLGLWQKEAKILFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 11 l~~v~~~~~~~~i~lvG~~GsGKSTll~~l~ 41 (109)
++++++...++-.+|+|+||||||||+.+|.
T Consensus 51 ~~~~~l~f~~g~n~i~G~NGaGKS~lleAl~ 81 (517)
T 4ad8_A 51 ITQLELELGGGFCAFTGETGAGKSIIVDALG 81 (517)
T ss_dssp BSCEEEECCCSEEEEEESHHHHHHHHTHHHH
T ss_pred eeeEEEecCCCeEEEEcCCCCCHHHHHHHHH
Confidence 4556677777856999999999999999985
No 404
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.42 E-value=0.00012 Score=48.29 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=20.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcC
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~ 43 (109)
+..|+|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 345799999999999999999854
No 405
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.41 E-value=9.7e-05 Score=49.48 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=18.4
Q ss_pred EEEEEeCCCCcHHHHHHHHh
Q 033893 22 KILFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~ 41 (109)
+|+|.|++||||||+.+.|+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999996
No 406
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.41 E-value=9.2e-05 Score=55.09 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.3
Q ss_pred cccccEE-EEEeCCCCcHHHHHHHHh
Q 033893 17 WQKEAKI-LFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 17 ~~~~~~i-~lvG~~GsGKSTll~~l~ 41 (109)
-++++++ +|+|++|||||||++.+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 4667776 999999999999999664
No 407
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.41 E-value=0.0011 Score=51.15 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=56.7
Q ss_pred ccE-EEEEeCCCCcHHHHHHHHh---cC---------------cccccCC-------cccCceEEEEECCEEEEEEEcCC
Q 033893 20 EAK-ILFLGLDNAGKTTLLHMLK---DE---------------RLVQHQP-------TQHPTSEELSIGKIKFKAFDLGG 73 (109)
Q Consensus 20 ~~~-i~lvG~~GsGKSTll~~l~---g~---------------~~~~~~p-------t~~~~~g~i~~~~~~i~~~d~~g 73 (109)
+-| |+|+|..++|||||.-+|. |. ...++.+ |+....-++.++++.+++.|.+|
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 345 7999999999999999884 11 0111111 33344567888999999999999
Q ss_pred cccccccHHhhhhcCCEEEEEEeC
Q 033893 74 HQIARRVWKDYYAKVIGSFKTKKI 97 (109)
Q Consensus 74 ~~~~r~~~~~~~~~~~~~v~~~~~ 97 (109)
..++..--..-.+-+|++|++.+-
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda 133 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDA 133 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEET
T ss_pred cHHHHHHHHHHHHhcCceEEEeec
Confidence 988877667778899999888774
No 408
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.41 E-value=0.00011 Score=48.65 Aligned_cols=21 Identities=43% Similarity=0.713 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|.|++||||||+.+.|+.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 469999999999999999985
No 409
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.41 E-value=9.3e-05 Score=48.28 Aligned_cols=21 Identities=43% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|.|++||||||+.+.|..
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHH
Confidence 479999999999999999983
No 410
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.40 E-value=0.00011 Score=53.89 Aligned_cols=55 Identities=18% Similarity=0.307 Sum_probs=34.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcC-----cc--cccCCcccCceEEEEECCEEEEEEEcCCcc
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDE-----RL--VQHQPTQHPTSEELSIGKIKFKAFDLGGHQ 75 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~-----~~--~~~~pt~~~~~g~i~~~~~~i~~~d~~g~~ 75 (109)
..+++++|.+|+|||||++.|.+. +. ....|....+...+.++. .+.+.|++|-.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG~~ 223 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES-GATLYDTPGII 223 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST-TCEEEECCSCC
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC-CeEEEeCCCcC
Confidence 456899999999999999999875 21 122232222223333332 25667988843
No 411
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.40 E-value=8.6e-05 Score=51.62 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=18.3
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 033893 23 ILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 23 i~lvG~~GsGKSTll~~l~g 42 (109)
++|+|++||||||+.+.|+.
T Consensus 4 i~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 58999999999999999874
No 412
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.38 E-value=0.00014 Score=55.19 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=24.3
Q ss_pred HhcCCcccccEEEEEeCCCCcHHHHHHHHhcC
Q 033893 12 ASLGLWQKEAKILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 12 ~~v~~~~~~~~i~lvG~~GsGKSTll~~l~g~ 43 (109)
.++++..+.+ ++|+||+|+|||++++++.+.
T Consensus 42 ~~~g~~~p~g-vLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 42 NRIGARMPKG-ILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp HTTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 3445444444 899999999999999999864
No 413
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.38 E-value=0.00011 Score=49.23 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=18.4
Q ss_pred EEEEEeCCCCcHHHHHHHHh
Q 033893 22 KILFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~ 41 (109)
+|+|+|++||||||+.+.|+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999996
No 414
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.37 E-value=0.00011 Score=48.33 Aligned_cols=20 Identities=40% Similarity=0.767 Sum_probs=18.5
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 033893 23 ILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 23 i~lvG~~GsGKSTll~~l~g 42 (109)
|+|.|++||||||+.+.|..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999974
No 415
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.37 E-value=5.4e-05 Score=54.36 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=19.3
Q ss_pred EEEEeCCCCcHHHHHHHHhcC
Q 033893 23 ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 23 i~lvG~~GsGKSTll~~l~g~ 43 (109)
+++.||+|+||||+++++++.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 699999999999999999864
No 416
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.36 E-value=0.00014 Score=48.06 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~ 43 (109)
.|+|.|++||||||+.+.|...
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4699999999999999999864
No 417
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.36 E-value=0.00011 Score=49.34 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~ 43 (109)
.|+|.|++||||||+.+.|...
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~l 27 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFADL 27 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHc
Confidence 4699999999999999999863
No 418
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.35 E-value=0.00016 Score=47.47 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|.|++||||||+.+.|+.
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999973
No 419
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.34 E-value=0.00016 Score=48.11 Aligned_cols=21 Identities=43% Similarity=0.665 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|.|++||||||+.+.|..
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 469999999999999999974
No 420
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.34 E-value=0.00015 Score=47.38 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|.|++||||||+.+.|+.
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999998863
No 421
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.34 E-value=0.00017 Score=52.91 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=21.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcC
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~ 43 (109)
..+++++|.+|+|||||++.|.+.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhh
Confidence 456899999999999999999875
No 422
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.32 E-value=0.00015 Score=46.51 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999975
No 423
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.32 E-value=0.00017 Score=47.91 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|.|++||||||+.+.|..
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999999984
No 424
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.31 E-value=0.00017 Score=48.84 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHhc
Q 033893 21 AKILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g 42 (109)
-.|+|+|++||||||+.+.|+.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4579999999999999999973
No 425
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.30 E-value=0.00016 Score=47.55 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|.|++||||||+.+.|+.
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999974
No 426
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.29 E-value=0.00022 Score=47.74 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.4
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhc
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g 42 (109)
....++|.|++|+||||+++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 344579999999999999999874
No 427
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.29 E-value=0.00021 Score=47.37 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHhc
Q 033893 21 AKILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g 42 (109)
-.|+|+|++||||||+.+.|+.
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999999874
No 428
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.29 E-value=0.00015 Score=47.33 Aligned_cols=20 Identities=45% Similarity=0.640 Sum_probs=18.5
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 033893 23 ILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 23 i~lvG~~GsGKSTll~~l~g 42 (109)
|+|.|++||||||+.+.|..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999975
No 429
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.29 E-value=0.00016 Score=48.84 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|+|++||||||+.+.|+.
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999973
No 430
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.29 E-value=0.00018 Score=48.31 Aligned_cols=25 Identities=32% Similarity=0.398 Sum_probs=21.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcCc
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDER 44 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~~ 44 (109)
..+|+++|.+|||||||++.+....
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3567999999999999999998653
No 431
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.29 E-value=0.00018 Score=48.36 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
+|+|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999874
No 432
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.29 E-value=0.00016 Score=46.59 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|.|++||||||+.+.|+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999999974
No 433
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.26 E-value=0.00018 Score=46.84 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|.|++||||||+.+.|+.
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999999873
No 434
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.26 E-value=0.00019 Score=48.98 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHhc
Q 033893 21 AKILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g 42 (109)
..|+|+|++||||||+.+.|++
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999999985
No 435
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.25 E-value=0.00021 Score=47.79 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcC
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~ 43 (109)
..++++|..|||||||++.+.+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 35799999999999999999854
No 436
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.24 E-value=0.00044 Score=44.35 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.3
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcC
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~ 43 (109)
...++|.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 345799999999999999988753
No 437
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.23 E-value=0.00016 Score=53.20 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=26.4
Q ss_pred HHHHhcCCccccc---EEEEEeCCCCcHHHHHHHHhcC
Q 033893 9 GILASLGLWQKEA---KILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 9 ~~l~~v~~~~~~~---~i~lvG~~GsGKSTll~~l~g~ 43 (109)
.+++.+++.++++ .++|+|++||||||+.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3566666555443 3799999999999999988753
No 438
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.23 E-value=0.00024 Score=47.86 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHhc
Q 033893 21 AKILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g 42 (109)
-.|+|+|++||||||+.+.|+.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999999999874
No 439
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.21 E-value=0.00024 Score=49.30 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=19.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHh
Q 033893 21 AKILFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~ 41 (109)
..++|.|++||||||+.+.|+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357999999999999999997
No 440
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.20 E-value=0.00025 Score=48.85 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhc
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g 42 (109)
+-.|+|.|++||||||+.+.|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34579999999999999999973
No 441
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.18 E-value=0.00023 Score=46.44 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=18.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|+|++||||||+.+.|+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999999874
No 442
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.16 E-value=0.00027 Score=47.95 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=18.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999874
No 443
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.16 E-value=0.00017 Score=46.86 Aligned_cols=21 Identities=33% Similarity=0.346 Sum_probs=14.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|.|++||||||+.+.|+.
T Consensus 7 ~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp EEEEECCC----CHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999999973
No 444
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.16 E-value=0.00033 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcC
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~ 43 (109)
..++|.|++|+||||+++.+.+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34799999999999999998853
No 445
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.15 E-value=0.00036 Score=46.19 Aligned_cols=20 Identities=40% Similarity=0.370 Sum_probs=18.3
Q ss_pred EEEEEeCCCCcHHHHHHHHh
Q 033893 22 KILFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~ 41 (109)
.|+|.|++||||||+.+.|.
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36999999999999999887
No 446
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.15 E-value=0.00025 Score=49.29 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=18.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|.|++||||||+.+.|..
T Consensus 6 lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 369999999999999999874
No 447
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.14 E-value=0.00026 Score=46.86 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=18.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.++++|++||||||++..|..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999998874
No 448
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.11 E-value=0.00028 Score=46.66 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|.|++||||||+.+.|+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999999975
No 449
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.10 E-value=0.00043 Score=49.70 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~ 43 (109)
.++|.|++|+||||+++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999854
No 450
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.10 E-value=0.00021 Score=53.60 Aligned_cols=28 Identities=29% Similarity=0.261 Sum_probs=22.4
Q ss_pred cCCcccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 14 LGLWQKEAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 14 v~~~~~~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
+++. +++ ++++|++||||||++..|++.
T Consensus 93 i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 93 PVLK--DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp CCCC--SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCC--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4444 455 589999999999999999864
No 451
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.09 E-value=0.00034 Score=45.06 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
-|+|.|..||||||+.+.|+.
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999999974
No 452
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.08 E-value=0.00039 Score=46.85 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|+|++||||||+.+.|+.
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999974
No 453
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.07 E-value=0.0011 Score=43.80 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHhc
Q 033893 21 AKILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g 42 (109)
.-+.|.|++|+|||++++++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4579999999999999999874
No 454
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.06 E-value=0.00045 Score=47.02 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=20.5
Q ss_pred cccEEEEEeCCCCcHHHHHHHHhc
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~g 42 (109)
+.-.|+|+|++||||||+.+.|+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 334689999999999999999974
No 455
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.05 E-value=0.00051 Score=55.08 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=22.7
Q ss_pred cccccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 17 WQKEAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 17 ~~~~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
..++++ ++|+|++|+|||||++++++.
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 344554 799999999999999999976
No 456
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.04 E-value=0.00059 Score=43.76 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.3
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcC
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~ 43 (109)
...++|.|++|+|||++++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 345799999999999999998753
No 457
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.04 E-value=0.00037 Score=48.92 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|.|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 369999999999999999985
No 458
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.03 E-value=0.0001 Score=59.54 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=27.2
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHH
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLH 38 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~ 38 (109)
+.|++|+.+++.+++ ++.|.||||||||..
T Consensus 24 hNLkni~v~iP~~~l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 24 HNLKDISVKVPRDALVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp TTCCSEEEEEESSSEEEEESSTTSSHHHHHT
T ss_pred cCCCCeeEEecCCCEEEEECCCCCCHHHHHH
Confidence 468899999999996 999999999999985
No 459
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.99 E-value=0.00061 Score=46.69 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=21.3
Q ss_pred cccccEE-EEEeCCCCcHHHHHHHHhc
Q 033893 17 WQKEAKI-LFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 17 ~~~~~~i-~lvG~~GsGKSTll~~l~g 42 (109)
..++.+| +|+|++||||+|..+.|+.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3455676 8999999999999998874
No 460
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.99 E-value=0.00046 Score=48.29 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcC
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~ 43 (109)
...++|.|++|+||||+.+++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 345799999999999999999854
No 461
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.99 E-value=0.00047 Score=50.61 Aligned_cols=27 Identities=30% Similarity=0.317 Sum_probs=22.8
Q ss_pred cccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 17 WQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 17 ~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
-++++++ .|.|++|||||||+..+...
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3667886 99999999999999988743
No 462
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.98 E-value=0.00018 Score=51.25 Aligned_cols=68 Identities=6% Similarity=-0.140 Sum_probs=49.8
Q ss_pred HHHHHHhcCcc--cccCCcccCceEEEEEC-CEEEEEEEcCCcccccccHHhhhhcCCEEEEEEeCCCcc-cccc
Q 033893 35 TLLHMLKDERL--VQHQPTQHPTSEELSIG-KIKFKAFDLGGHQIARRVWKDYYAKVIGSFKTKKIEFRD-FYEV 105 (109)
Q Consensus 35 Tll~~l~g~~~--~~~~pt~~~~~g~i~~~-~~~i~~~d~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~-~~~~ 105 (109)
++++++....| ..+.||++.... +.+. +..+.+||+ +++++.+++.||+++|+++.++|++... ++..
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~ 103 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYI 103 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHH
Confidence 36666665566 457799885443 3332 236789999 8899999999999999999999998664 4443
No 463
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.97 E-value=0.00069 Score=47.04 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcC
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~ 43 (109)
.-++|.|++|+|||++.++++..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 34899999999999999999854
No 464
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.96 E-value=0.00051 Score=48.64 Aligned_cols=25 Identities=36% Similarity=0.593 Sum_probs=21.1
Q ss_pred cccE-EEEEeCCCCcHHHHHHHHhcC
Q 033893 19 KEAK-ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 19 ~~~~-i~lvG~~GsGKSTll~~l~g~ 43 (109)
+..+ ++|.|++|+|||++.+++.+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 3444 799999999999999999864
No 465
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.95 E-value=0.00015 Score=59.00 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=27.1
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHH
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLH 38 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~ 38 (109)
+.|++|+.++++.++ ++.|+||||||||.-
T Consensus 12 hNLkni~~~ip~~~l~v~tG~SGSGKSsLaf 42 (916)
T 3pih_A 12 HNLKNITVRIPKNRLVVITGVSGSGKSSLAM 42 (916)
T ss_dssp TTCCSBCCEEETTSEEEEEESTTSSSHHHHT
T ss_pred cccCcceeccCCCcEEEEECCCCCcHHHHHH
Confidence 568999999999996 999999999999974
No 466
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.95 E-value=0.00062 Score=47.98 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|.|++||||||+.+.|..
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999999983
No 467
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.94 E-value=0.00043 Score=49.44 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=21.8
Q ss_pred cCCcccccE-EEEEeCCCCcHHHHHHHHh
Q 033893 14 LGLWQKEAK-ILFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 14 v~~~~~~~~-i~lvG~~GsGKSTll~~l~ 41 (109)
+++..+ ++ ++++|++|+||||++..++
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la 119 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLA 119 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHH
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHH
Confidence 445544 55 4999999999999999887
No 468
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.91 E-value=0.00065 Score=46.82 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|+|.|++||||||+.+.|..
T Consensus 24 iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999999975
No 469
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.90 E-value=0.00034 Score=48.27 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=18.7
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 033893 23 ILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 23 i~lvG~~GsGKSTll~~l~g 42 (109)
++|.|++|+|||++.+++..
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999985
No 470
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.89 E-value=0.0006 Score=47.12 Aligned_cols=32 Identities=13% Similarity=-0.041 Sum_probs=21.1
Q ss_pred cCCcccccccHHhhhhcCCEEEEEEeCCCccc
Q 033893 71 LGGHQIARRVWKDYYAKVIGSFKTKKIEFRDF 102 (109)
Q Consensus 71 ~~g~~~~r~~~~~~~~~~~~~v~~~~~~~~~~ 102 (109)
.+||+++|.+|++||.+++++|.+.|-+...+
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R 140 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR 140 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCC
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhH
Confidence 45899999999999999999999998765543
No 471
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.88 E-value=0.0009 Score=47.85 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHhc
Q 033893 21 AKILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g 42 (109)
..++|.|++|+||||+++.+..
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3479999999999999999874
No 472
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.88 E-value=0.00063 Score=45.59 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~ 43 (109)
.|+|.|..||||||+.+.|+..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3699999999999999999853
No 473
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.87 E-value=0.001 Score=44.01 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=18.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
-++|.|++|+||||+++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999999874
No 474
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.86 E-value=0.00074 Score=45.78 Aligned_cols=20 Identities=40% Similarity=0.557 Sum_probs=18.2
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 033893 23 ILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 23 i~lvG~~GsGKSTll~~l~g 42 (109)
|+|+||+||||+|..+.|+.
T Consensus 3 Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998874
No 475
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.85 E-value=0.00069 Score=50.34 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=18.4
Q ss_pred EEEEeCCCCcHHHHHHHHhc
Q 033893 23 ILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 23 i~lvG~~GsGKSTll~~l~g 42 (109)
|+|+|++||||||+.+.|..
T Consensus 261 Iil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTG
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 59999999999999999874
No 476
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.85 E-value=0.00024 Score=58.21 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=26.8
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHH
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLH 38 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~ 38 (109)
+.|++|+.++++.++ ++.|+||||||||.-
T Consensus 34 hNLkni~v~iP~~~lvv~tG~SGSGKSSLaf 64 (993)
T 2ygr_A 34 HNLRSVDLDLPRDALIVFTGLSGSGKSSLAF 64 (993)
T ss_dssp SSCCSEEEEEESSSEEEEEESTTSSHHHHHT
T ss_pred cccCceeeeccCCCEEEEECCCCCcHHHHHH
Confidence 458899999999996 999999999999965
No 477
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.84 E-value=0.00073 Score=47.34 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcC
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~ 43 (109)
+.+++.|++|+|||++.+++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 35799999999999999999854
No 478
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.83 E-value=0.00025 Score=57.99 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=26.7
Q ss_pred HHHHhcCCcccccEE-EEEeCCCCcHHHHHH
Q 033893 9 GILASLGLWQKEAKI-LFLGLDNAGKTTLLH 38 (109)
Q Consensus 9 ~~l~~v~~~~~~~~i-~lvG~~GsGKSTll~ 38 (109)
+.|++|+.+++..++ ++.|+||||||||.-
T Consensus 32 hNLkni~v~iP~~~lvv~tG~SGSGKSSLaf 62 (972)
T 2r6f_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAF 62 (972)
T ss_dssp SSCCSEEEEEETTSEEEEEESTTSSHHHHHT
T ss_pred ccCCceeeeccCCcEEEEECCCCCCHHHHHH
Confidence 458899999999996 999999999999964
No 479
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.83 E-value=0.00074 Score=49.53 Aligned_cols=23 Identities=39% Similarity=0.719 Sum_probs=20.1
Q ss_pred cccEEEEEeCCCCcHHHHHHHHh
Q 033893 19 KEAKILFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 19 ~~~~i~lvG~~GsGKSTll~~l~ 41 (109)
+..+++|+|.+||||||+++.+.
T Consensus 32 ~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHHH
Confidence 34578999999999999999875
No 480
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.82 E-value=0.00063 Score=48.31 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~ 43 (109)
-++|.|++|+||||+++++...
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4799999999999999999853
No 481
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.80 E-value=0.0016 Score=46.69 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=20.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcC
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~ 43 (109)
...++|.|++|+||||+++.+...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 345799999999999999999853
No 482
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.78 E-value=0.0054 Score=46.29 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHhc
Q 033893 21 AKILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g 42 (109)
+-|+|+|+.++||||||+.|.|
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhh
Confidence 3459999999999999999975
No 483
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.76 E-value=0.0009 Score=50.11 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=26.0
Q ss_pred HHhcCCcccccEE-EEEeCCCCcHHHHHHHHhcC
Q 033893 11 LASLGLWQKEAKI-LFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 11 l~~v~~~~~~~~i-~lvG~~GsGKSTll~~l~g~ 43 (109)
|+++....+++++ +|.|++|+||||++..++..
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4455445777875 99999999999999988753
No 484
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.76 E-value=0.0011 Score=45.20 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=18.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.|++.|.+||||||+.+.|..
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 369999999999999999984
No 485
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.75 E-value=0.0011 Score=45.30 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
-++|.|++|+|||++.+++..
T Consensus 41 ~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999974
No 486
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.72 E-value=0.00093 Score=48.85 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=20.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcC
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~ 43 (109)
...++|+|++||||||+++.+...
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHH
Confidence 445799999999999999999865
No 487
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.71 E-value=0.001 Score=43.56 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.++|.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998874
No 488
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.69 E-value=0.0019 Score=45.80 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=19.3
Q ss_pred EEEEeCCCCcHHHHHHHHhcC
Q 033893 23 ILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 23 i~lvG~~GsGKSTll~~l~g~ 43 (109)
+++.|++|+||||+++++...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998754
No 489
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.69 E-value=0.0011 Score=48.54 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=21.7
Q ss_pred cccccEEEEEeCCCCcHHHHHHHHh
Q 033893 17 WQKEAKILFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 17 ~~~~~~i~lvG~~GsGKSTll~~l~ 41 (109)
..+..+++|+|..+|||||+++.+.
T Consensus 6 ~~~~~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 6 GIHIRKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCceeEEEECCCCCcHHHHHHHHH
Confidence 3456689999999999999999886
No 490
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.68 E-value=0.00091 Score=48.76 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.3
Q ss_pred cccccEE-EEEeCCCCcHHHHHHHHh
Q 033893 17 WQKEAKI-LFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 17 ~~~~~~i-~lvG~~GsGKSTll~~l~ 41 (109)
-++++++ .|.|++|+|||||+..+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la 82 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAV 82 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHH
Confidence 4567775 999999999999988776
No 491
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.66 E-value=0.0012 Score=49.63 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=18.7
Q ss_pred cE-EEEEeCCCCcHHHHHHHHh
Q 033893 21 AK-ILFLGLDNAGKTTLLHMLK 41 (109)
Q Consensus 21 ~~-i~lvG~~GsGKSTll~~l~ 41 (109)
.+ ++++|++||||||++..|+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 45 5999999999999999887
No 492
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.65 E-value=0.0019 Score=45.21 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
.++|.|++|+|||++.++++.
T Consensus 69 ~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999987764
No 493
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.64 E-value=0.0011 Score=48.39 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhc
Q 033893 22 KILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g 42 (109)
-|+|+|++||||||+.+.|+.
T Consensus 9 lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHH
Confidence 369999999999999998874
No 494
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.64 E-value=0.0013 Score=41.67 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=20.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcC
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~ 43 (109)
..-|.|.|++|+|||++.+.+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 345899999999999999999854
No 495
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.62 E-value=0.00078 Score=46.63 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~ 43 (109)
.|+|.|++||||||+.+.|...
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3699999999999999998853
No 496
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.62 E-value=0.0012 Score=47.85 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhcC
Q 033893 22 KILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 22 ~i~lvG~~GsGKSTll~~l~g~ 43 (109)
.|+|+|++||||||+.+.|+..
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3699999999999999998843
No 497
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.61 E-value=0.0015 Score=44.40 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.2
Q ss_pred cE-EEEEeCCCCcHHHHHHHHhc
Q 033893 21 AK-ILFLGLDNAGKTTLLHMLKD 42 (109)
Q Consensus 21 ~~-i~lvG~~GsGKSTll~~l~g 42 (109)
+. |++.|++||||||+.+.|..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 45 59999999999999999863
No 498
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.61 E-value=0.0011 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHhcC
Q 033893 21 AKILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 21 ~~i~lvG~~GsGKSTll~~l~g~ 43 (109)
.-++|.|++|+|||||++++.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34799999999999999999853
No 499
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.59 E-value=0.0011 Score=49.67 Aligned_cols=30 Identities=27% Similarity=0.259 Sum_probs=24.0
Q ss_pred cCCccccc-EEEEEeCCCCcHHHHHHHHhcC
Q 033893 14 LGLWQKEA-KILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 14 v~~~~~~~-~i~lvG~~GsGKSTll~~l~g~ 43 (109)
+.+++.+| +++|+|++|+|||||++.|...
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 33666555 6799999999999999988753
No 500
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.59 E-value=0.0015 Score=45.23 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=20.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHhcC
Q 033893 20 EAKILFLGLDNAGKTTLLHMLKDE 43 (109)
Q Consensus 20 ~~~i~lvG~~GsGKSTll~~l~g~ 43 (109)
...++|.|++|+|||++.+++...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 345799999999999999999753
Done!