BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033894
(109 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5NA06|COPZ3_ORYSJ Coatomer subunit zeta-3 OS=Oryza sativa subsp. japonica
GN=Os01g0838800 PE=2 SV=1
Length = 177
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%)
Query: 8 ANSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTER 67
A +E I++ S ++VY + D+ FV G DE +EL LA V+ + A+ R
Sbjct: 51 ARTEAEIVMFDSYFVVYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRR 110
Query: 68 LFLDKYGKICLCLDEIVWKGLLENTEKDRI 97
L+ I LCLDE+V G++ T+ I
Sbjct: 111 AALENLDLIFLCLDEVVDGGIVLETDAKAI 140
>sp|Q9MAX5|COPZ1_ORYSJ Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica GN=COPZ1
PE=2 SV=1
Length = 177
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%)
Query: 8 ANSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTER 67
A +E I++ +VY + D+ FV G +E +EL LA V+ T AV +R
Sbjct: 51 AGAEAEIVMFDGHIVVYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDIILRNNVDKR 110
Query: 68 LFLDKYGKICLCLDEIVWKGLLENTE 93
L+ I LCLDEIV G++ TE
Sbjct: 111 TALENLDLILLCLDEIVDGGIVLETE 136
>sp|Q54CA7|COPZB_DICDI Probable coatomer subunit zeta-B OS=Dictyostelium discoideum
GN=copZb PE=3 SV=1
Length = 178
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 28 GDVSIFVVGKD-EYDELALAEVIFAITSAVKDACGK----IPTERLFLDKYGKICLCLDE 82
DV IFVVG +ELAL +V+ + S K AC + T++ FL+ Y I L +DE
Sbjct: 71 SDVWIFVVGNSLNSNELALLDVLNTLISLFKKACATDESIMITKKTFLENYALIRLYIDE 130
Query: 83 IVWKGLLENTEKDRI 97
IV G++ +++ I
Sbjct: 131 IVSDGIIFEVDEETI 145
>sp|Q6Z844|COPZ2_ORYSJ Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica GN=COPZ2
PE=2 SV=1
Length = 182
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 8 ANSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTER 67
A SE I + +VY + D+ FV D+ +EL +A V+ + +V +R
Sbjct: 56 ARSEAEITLFDGYIVVYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLRGDVEKR 115
Query: 68 LFLDKYGKICLCLDEIVWKGLLENTEKDRI 97
L+ I LC+DEIV G++ T+ + I
Sbjct: 116 TALENLDLILLCIDEIVDGGIILETDANTI 145
>sp|Q8H1F4|COPZ3_ARATH Coatomer subunit zeta-3 OS=Arabidopsis thaliana GN=At4g08520 PE=2
SV=1
Length = 181
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%)
Query: 8 ANSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTER 67
A +E I + S +VY D+ FV G + +EL L+ V+ AV +
Sbjct: 55 ARTEAEITLLESNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKM 114
Query: 68 LFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPP 106
L+ I LCLDE+V +G++ T+ + I V ++
Sbjct: 115 EALENLDLIFLCLDEMVDQGMVLETDANVIAGKVAMQSA 153
>sp|Q84LG4|COPZ2_ARATH Coatomer subunit zeta-2 OS=Arabidopsis thaliana GN=At3g09800 PE=2
SV=1
Length = 179
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%)
Query: 8 ANSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTER 67
A +E I + S IVY D+ FV G + +EL LA V+ AV +
Sbjct: 53 ARTEAEITLLDSNIIVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEKM 112
Query: 68 LFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLK 104
L+ I LCLDE+V +G++ T+ + I V ++
Sbjct: 113 EALENLDLIFLCLDEMVDQGVVLETDPNVIAGKVAMQ 149
>sp|P23561|STE11_YEAST Serine/threonine-protein kinase STE11 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=STE11 PE=1 SV=3
Length = 717
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 89 LENTEKDRIRRLVRLKPPNEF 109
++NTEKDRIR++ +PP+EF
Sbjct: 263 IDNTEKDRIRQIFNQRPPSEF 283
>sp|A7A1P0|STE11_YEAS7 Serine/threonine-protein kinase STE11 OS=Saccharomyces cerevisiae
(strain YJM789) GN=STE11 PE=3 SV=1
Length = 717
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 89 LENTEKDRIRRLVRLKPPNEF 109
++NTEKDRIR++ +PP+EF
Sbjct: 263 IDNTEKDRIRQIFNQRPPSEF 283
>sp|B5VNQ3|STE11_YEAS6 Serine/threonine-protein kinase STE11 OS=Saccharomyces cerevisiae
(strain AWRI1631) GN=STE11 PE=3 SV=2
Length = 717
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 89 LENTEKDRIRRLVRLKPPNEF 109
++NTEKDRIR++ +PP+EF
Sbjct: 263 IDNTEKDRIRQIFNQRPPSEF 283
>sp|Q54HD4|COPZA_DICDI Probable coatomer subunit zeta-A OS=Dictyostelium discoideum
GN=copZa PE=3 SV=1
Length = 175
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 9 NSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIP-TER 67
N G I + + +VY ++ I++VG +E+AL V+ + +++ ++
Sbjct: 52 NFGGEITLLDNYLVVYKSFSNIIIYMVGDQNQNEIALLYVLNSFIDTLQNLFENSQINKK 111
Query: 68 LFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPNE 108
L LD L LDEI+ G++ ++ I V +K P+
Sbjct: 112 LILDGINYTLLTLDEIIDGGIIMESDSAVIADRVGIKAPDN 152
>sp|P53600|COPZ_YEAST Coatomer subunit zeta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RET3 PE=1 SV=1
Length = 189
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%)
Query: 10 SEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLF 69
+ IL+ ++Y D++I++V E +E+ L + AI A+ ++
Sbjct: 61 QDSEILIFEDHLVLYKEYIDITIYLVASLEENEIVLQQGFSAIRGALDLILNSGMDKKNI 120
Query: 70 LDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPNE 108
+ Y + L +DE + G++ T+ + I V P NE
Sbjct: 121 QENYDMVLLAIDETIDNGVILETDSNTIASRVSKPPTNE 159
>sp|Q9P299|COPZ2_HUMAN Coatomer subunit zeta-2 OS=Homo sapiens GN=COPZ2 PE=2 SV=1
Length = 210
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%)
Query: 8 ANSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTER 67
+ +E I + IVY D+ ++VVG +EL L V+ + ++ K +R
Sbjct: 86 SRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKR 145
Query: 68 LFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLK 104
L+ L LDEIV G++ ++ ++ + V +
Sbjct: 146 WLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFR 182
>sp|Q9JHH9|COPZ2_MOUSE Coatomer subunit zeta-2 OS=Mus musculus GN=Copz2 PE=2 SV=1
Length = 205
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%)
Query: 8 ANSEGNILVERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTER 67
+ +E I + IVY D+ ++VVG +EL L V+ + ++ K +R
Sbjct: 81 SRTESEIAFLGGMTIVYKSSIDIFLYVVGSSSENELMLMSVLACLFDSLSHILRKNVEKR 140
Query: 68 LFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLK 104
L+ L LDE V G++ ++ ++ + V +
Sbjct: 141 WLLENMDGAFLVLDETVDGGVILESDPQQVIQKVNFR 177
>sp|P0C843|CI014_HUMAN Putative uncharacterized protein encoded by LINC00032 OS=Homo
sapiens GN=LINC00032 PE=5 SV=1
Length = 101
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 10/60 (16%)
Query: 37 KDEYDELALAEVIFAITSAVKDACGKIPTE------RLFLDKYGKICLCLDEIVWKGLLE 90
KD ++++A + ++TS + K+P E LF++KY K+C DE V+K +E
Sbjct: 16 KDTFNKMAHRKR-HSVTS---EFLSKVPDEVRQRYINLFVEKYLKVCKTEDEAVYKAKIE 71
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.144 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,928,920
Number of Sequences: 539616
Number of extensions: 1388757
Number of successful extensions: 2868
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2855
Number of HSP's gapped (non-prelim): 19
length of query: 109
length of database: 191,569,459
effective HSP length: 77
effective length of query: 32
effective length of database: 150,019,027
effective search space: 4800608864
effective search space used: 4800608864
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)