Query 033894
Match_columns 109
No_of_seqs 106 out of 427
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 12:26:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tjz_C Coatomer subunit zeta-1 100.0 2.8E-32 9.7E-37 196.0 13.3 106 1-106 12-151 (153)
2 1w63_Q Adapter-related protein 100.0 5.3E-29 1.8E-33 178.9 12.6 103 1-104 1-138 (158)
3 2vgl_S AP-2 complex subunit si 100.0 1.8E-28 6.1E-33 172.9 14.7 102 1-103 1-137 (142)
4 2vgl_M AP-2 complex subunit MU 99.9 3.3E-24 1.1E-28 173.5 13.5 104 1-105 1-137 (435)
5 1w63_M Adaptor-related protein 99.9 6E-24 2E-28 171.4 8.4 104 1-105 2-139 (423)
6 1nkl_A NK-lysin; saposin fold, 39.4 51 0.0018 19.6 4.3 34 47-80 5-38 (78)
7 1l9l_A Granulysin; saposin fol 36.0 37 0.0013 20.5 3.2 34 46-80 4-37 (74)
8 2nut_C Vesicle-trafficking pro 34.7 1.1E+02 0.0039 21.1 9.3 46 17-62 57-102 (196)
9 3bqp_A Proactivator polypeptid 31.5 67 0.0023 18.5 3.9 30 47-76 6-35 (80)
10 4ddj_A Saposin-A, protein A; s 29.0 58 0.002 19.2 3.3 30 48-77 8-37 (83)
11 1of9_A Pore-forming peptide am 27.6 67 0.0023 19.1 3.4 33 47-80 6-38 (77)
12 2gtg_A Proactivator polypeptid 27.0 70 0.0024 18.8 3.4 31 47-77 8-38 (83)
13 3lyv_A Ribosome-associated fac 24.3 67 0.0023 19.3 2.9 22 3-30 29-51 (66)
14 3ka5_A Ribosome-associated pro 21.8 73 0.0025 19.1 2.7 22 3-30 28-50 (65)
15 3k2t_A LMO2511 protein; lister 21.7 77 0.0026 18.4 2.7 20 4-29 29-49 (57)
No 1
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=100.00 E-value=2.8e-32 Score=196.01 Aligned_cols=106 Identities=23% Similarity=0.388 Sum_probs=98.3
Q ss_pred CceEEEeeecCCcEEEEc----------------------------------CeEEEEEEeccEEEEEEEcCCCCHHHHH
Q 033894 1 MILAVLFANSEGNILVER----------------------------------SVYIVYTVLGDVSIFVVGKDEYDELALA 46 (109)
Q Consensus 1 mi~~~l~~~~~g~i~l~~----------------------------------~~~iVyr~~~dl~~~vvg~~~eNEL~l~ 46 (109)
||+|+++.|++|+.++.+ ++++|||+++||+|+++++.++||++++
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~il 91 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLM 91 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCCCCEEEETTEEEEEEECSSCEEEEEEETTSCHHHHH
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCCEEEECCEEEEEEEECCEEEEEEEcCCCChHHHH
Confidence 899999999999999987 7899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHHHHHHhCCEEEEeCHHHHHHHhhcCCC
Q 033894 47 EVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPP 106 (109)
Q Consensus 47 e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~lDEii~~GiI~Etd~~~I~~rv~~k~p 106 (109)
++||.++|+|+.+|++++||+++++||++++.+|||++|+|+++|||++.|++|++++..
T Consensus 92 e~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~~ 151 (153)
T 3tjz_C 92 TVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGE 151 (153)
T ss_dssp HHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhcccC
Confidence 999999999999996679999999999999999999999999999999999999988754
No 2
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.96 E-value=5.3e-29 Score=178.93 Aligned_cols=103 Identities=17% Similarity=0.284 Sum_probs=99.5
Q ss_pred CceEEEeeecCCcEEEEc-----------------------------------CeEEEEEEeccEEEEEEEcCCCCHHHH
Q 033894 1 MILAVLFANSEGNILVER-----------------------------------SVYIVYTVLGDVSIFVVGKDEYDELAL 45 (109)
Q Consensus 1 mi~~~l~~~~~g~i~l~~-----------------------------------~~~iVyr~~~dl~~~vvg~~~eNEL~l 45 (109)
||+|+++.|++|++++.+ ++++|||++++|+|+++++.++||+++
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~ 80 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELIT 80 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHH
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 999999999999999998 789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHHHHHHhCCEEEEeCHHHHHHHhhcC
Q 033894 46 AEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLK 104 (109)
Q Consensus 46 ~e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~lDEii~~GiI~Etd~~~I~~rv~~k 104 (109)
+++||.++++|+.+|++ +||.++.+||++++.+|||++|+|+++|||++.|.+++..+
T Consensus 81 le~L~~~vevl~~yf~~-v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~ 138 (158)
T 1w63_Q 81 LELIHRYVELLDKYFGS-VCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQA 138 (158)
T ss_dssp HHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcc-CCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcc
Confidence 99999999999999975 99999999999999999999999999999999999999754
No 3
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=99.96 E-value=1.8e-28 Score=172.88 Aligned_cols=102 Identities=17% Similarity=0.259 Sum_probs=98.5
Q ss_pred CceEEEeeecCCcEEEEc-----------------------------------CeEEEEEEeccEEEEEEEcCCCCHHHH
Q 033894 1 MILAVLFANSEGNILVER-----------------------------------SVYIVYTVLGDVSIFVVGKDEYDELAL 45 (109)
Q Consensus 1 mi~~~l~~~~~g~i~l~~-----------------------------------~~~iVyr~~~dl~~~vvg~~~eNEL~l 45 (109)
||+|+++.|++|++++.+ ++++|||++++|+|+++++.++||+++
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~ 80 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY 80 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCCTTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHHH
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHH
Confidence 999999999999999998 889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHHHHHHhCCEEEEeCHHHHHHHhhc
Q 033894 46 AEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRL 103 (109)
Q Consensus 46 ~e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~lDEii~~GiI~Etd~~~I~~rv~~ 103 (109)
+++||.++++|+.+|+ ++||+++.+||++++.+|||++|+|+++||++..|++++..
T Consensus 81 le~L~~~ve~l~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~ 137 (142)
T 2vgl_S 81 LEAIHNFVEVLNEYFH-NVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLM 137 (142)
T ss_dssp HHHHHHHHHHHHHHTT-SCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHh
Confidence 9999999999999997 59999999999999999999999999999999999999854
No 4
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=99.91 E-value=3.3e-24 Score=173.45 Aligned_cols=104 Identities=19% Similarity=0.294 Sum_probs=98.8
Q ss_pred CceEEEeeecCCcEEEEc---------------------------------CeEEEEEEeccEEEEEEEcCCCCHHHHHH
Q 033894 1 MILAVLFANSEGNILVER---------------------------------SVYIVYTVLGDVSIFVVGKDEYDELALAE 47 (109)
Q Consensus 1 mi~~~l~~~~~g~i~l~~---------------------------------~~~iVyr~~~dl~~~vvg~~~eNEL~l~e 47 (109)
||+|+++.|++|++++.+ ++++|||++++|+|+++++.++||+++++
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le 80 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFE 80 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCCHHHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHH
T ss_pred CeEEEEEECCCCCEEEEEecCCCCChhHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHH
Confidence 999999999999999998 78999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHHHHHHhCCEEEEeCHHHHHHHhhcCC
Q 033894 48 VIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKP 105 (109)
Q Consensus 48 ~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~lDEii~~GiI~Etd~~~I~~rv~~k~ 105 (109)
+||.|+++|+.+|++ +||++|.+||++++.+|||++|+|+++|||++.+.+++.+++
T Consensus 81 ~L~~~v~vl~~yf~~-v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~ 137 (435)
T 2vgl_M 81 FLYKMCDVMAAYFGK-ISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQG 137 (435)
T ss_dssp HHHHHHHHHHHHHSS-CCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHHHhc-cCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhcccc
Confidence 999999999999984 999999999999999999999999999999999888875543
No 5
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.90 E-value=6e-24 Score=171.43 Aligned_cols=104 Identities=14% Similarity=0.196 Sum_probs=98.9
Q ss_pred CceEEEeeecCCcEEEEc----------------------------------CeEEEEEEeccEEEEEEEcCCCCHHHHH
Q 033894 1 MILAVLFANSEGNILVER----------------------------------SVYIVYTVLGDVSIFVVGKDEYDELALA 46 (109)
Q Consensus 1 mi~~~l~~~~~g~i~l~~----------------------------------~~~iVyr~~~dl~~~vvg~~~eNEL~l~ 46 (109)
||+|+++.|++|++++.+ +++++|+++++|+|+++++.++||++++
T Consensus 2 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~l 81 (423)
T 1w63_M 2 SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLVF 81 (423)
T ss_dssp CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHHH
T ss_pred ceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHH
Confidence 899999999999999887 7899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHHHHHHhCCEEEEeCHHHHHHHhhcCC
Q 033894 47 EVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKP 105 (109)
Q Consensus 47 e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~lDEii~~GiI~Etd~~~I~~rv~~k~ 105 (109)
++||.++++|+.+|+ ++||+++.+||++++.+|||++|+|+++|||++.|.+++.+++
T Consensus 82 e~L~~~v~~l~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~ 139 (423)
T 1w63_M 82 SFLYKVVQVFSEYFK-ELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEG 139 (423)
T ss_dssp HHHHHHHHHHHHHSS-CCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCC
T ss_pred HHHHHHHHHHHHHHh-hcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCC
Confidence 999999999999996 5999999999999999999999999999999999999986654
No 6
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=39.41 E-value=51 Score=19.62 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHH
Q 033894 47 EVIFAITSAVKDACGKIPTERLFLDKYGKICLCL 80 (109)
Q Consensus 47 e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~l 80 (109)
++.+.++..++++.+++.++..+...+++++-.|
T Consensus 5 ~~C~~iv~~ve~~l~~~~t~~~I~~~l~~~C~~l 38 (78)
T 1nkl_A 5 ESCRKIIQKLEDMVGPQPNEDTVTQAASQVCDKL 38 (78)
T ss_dssp HHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhC
Confidence 5667788888888887888888888888887543
No 7
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=35.98 E-value=37 Score=20.45 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHH
Q 033894 46 AEVIFAITSAVKDACGKIPTERLFLDKYGKICLCL 80 (109)
Q Consensus 46 ~e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~l 80 (109)
-++.+.++.-++..+ ++.++..+...+++++-.+
T Consensus 4 C~~C~~~v~~le~~l-~n~Te~~I~~~L~~vC~~l 37 (74)
T 1l9l_A 4 YRTCLTIVQKLKKMV-DKPTQRSVSNAATRVCRTG 37 (74)
T ss_dssp HHHHHHHHHHHHHHC-SSCCHHHHHHHHHHGGGSS
T ss_pred ChHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHhC
Confidence 356777888888888 7788888888887776543
No 8
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=34.69 E-value=1.1e+02 Score=21.14 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=37.2
Q ss_pred EcCeEEEEEEeccEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCC
Q 033894 17 ERSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGK 62 (109)
Q Consensus 17 ~~~~~iVyr~~~dl~~~vvg~~~eNEL~l~e~i~~~~e~L~~~~~~ 62 (109)
.++|.+-|-.-.++.++++++.+...-....+|+-+.+-...-+++
T Consensus 57 ~~~y~fhy~~~~gl~~l~i~d~~yp~r~af~fL~~i~~~F~~~~~~ 102 (196)
T 2nut_C 57 AGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGK 102 (196)
T ss_dssp ETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred eCCEEEEEEeCCCeEEEEEEcCCcchHHHHHHHHHHHHHHHHhccc
Confidence 3578888888899999999999999988888888777766665553
No 9
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=31.53 E-value=67 Score=18.53 Aligned_cols=30 Identities=20% Similarity=0.091 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHhcHHHH
Q 033894 47 EVIFAITSAVKDACGKIPTERLFLDKYGKI 76 (109)
Q Consensus 47 e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v 76 (109)
++.+.++..++..++++.++..+..-++++
T Consensus 6 ~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~ 35 (80)
T 3bqp_A 6 EVCKKLVGYLDRNLEKNSTKQEILAALEKG 35 (80)
T ss_dssp HHHHHHHHHHHHHSCTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344555566666665555555555555444
No 10
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A*
Probab=28.98 E-value=58 Score=19.25 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHhcHHHHH
Q 033894 48 VIFAITSAVKDACGKIPTERLFLDKYGKIC 77 (109)
Q Consensus 48 ~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~ 77 (109)
+.+.++..+..+++++.++..+...+++++
T Consensus 8 ~C~~~v~~~~~~l~~n~t~~~I~~~l~~~C 37 (83)
T 4ddj_A 8 ICKDVVTAAGDMLKDNATEEEILVYLEKTC 37 (83)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 11
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4
Probab=27.65 E-value=67 Score=19.07 Aligned_cols=33 Identities=6% Similarity=0.075 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHhcHHHHHHHH
Q 033894 47 EVIFAITSAVKDACGKIPTERLFLDKYGKICLCL 80 (109)
Q Consensus 47 e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~l~l 80 (109)
++.+.++..++++++++ ++..+...+++++-.+
T Consensus 6 ~~C~~vv~~ve~~l~~n-t~~~I~~~l~~~C~~l 38 (77)
T 1of9_A 6 NLCTGLINTLENLLTTK-GADKVKDYISSLCNKA 38 (77)
T ss_dssp HHHHHHHHHHHHHCSSS-CSHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHC-cHHHHHHHHHHHHHcC
Confidence 45666777777777777 7777777766666444
No 12
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Probab=26.98 E-value=70 Score=18.84 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHhcHHHHH
Q 033894 47 EVIFAITSAVKDACGKIPTERLFLDKYGKIC 77 (109)
Q Consensus 47 e~i~~~~e~L~~~~~~~v~e~~ll~n~d~v~ 77 (109)
++.+.++..++.+++++.++..+..-+++++
T Consensus 8 ~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C 38 (83)
T 2gtg_A 8 EVCEFLVKEVTKLIDNNKTEKEILDAFDKMC 38 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3455556666666655556666655555443
No 13
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=24.27 E-value=67 Score=19.30 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=15.1
Q ss_pred eEEEeeecC-CcEEEEcCeEEEEEEeccE
Q 033894 3 LAVLFANSE-GNILVERSVYIVYTVLGDV 30 (109)
Q Consensus 3 ~~~l~~~~~-g~i~l~~~~~iVyr~~~dl 30 (109)
.|+++.|.+ |+ ..+||||-.+=
T Consensus 29 ~F~vF~n~etg~------~nVVYRR~dG~ 51 (66)
T 3lyv_A 29 DFFIYTDSEDGA------TNILYRREDGN 51 (66)
T ss_dssp SEEEEEETTTCS------EEEEEECTTSS
T ss_pred cEEEEEeCCCCC------EEEEEEECCCC
Confidence 367777777 44 47999986543
No 14
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=21.83 E-value=73 Score=19.09 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=15.0
Q ss_pred eEEEeeecC-CcEEEEcCeEEEEEEeccE
Q 033894 3 LAVLFANSE-GNILVERSVYIVYTVLGDV 30 (109)
Q Consensus 3 ~~~l~~~~~-g~i~l~~~~~iVyr~~~dl 30 (109)
.|+++.|.+ |+ ..+||||-.+=
T Consensus 28 ~F~vF~n~etg~------~nVVYRR~dG~ 50 (65)
T 3ka5_A 28 NFFVFQNGDSNE------VNVVYKRKDGN 50 (65)
T ss_dssp SEEEEEETTTTE------EEEEEECTTSC
T ss_pred cEEEEEeCCCCC------EEEEEEeCCCC
Confidence 367777777 44 47999986543
No 15
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=21.71 E-value=77 Score=18.38 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=14.1
Q ss_pred EEEeeecC-CcEEEEcCeEEEEEEecc
Q 033894 4 AVLFANSE-GNILVERSVYIVYTVLGD 29 (109)
Q Consensus 4 ~~l~~~~~-g~i~l~~~~~iVyr~~~d 29 (109)
|+++.|.+ | ...+||||..+
T Consensus 29 F~vF~n~~t~------~~nVvYrR~dG 49 (57)
T 3k2t_A 29 FYVYTDAETN------GTNIVYSRKDG 49 (57)
T ss_dssp EEEEEBSSSC------CEEEEEECTTS
T ss_pred EEEEEcCCCC------CEEEEEEeCCC
Confidence 67777766 4 45799998654
Done!