BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033895
         (109 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1F5A|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase
          Length = 513

 Score = 28.5 bits (62), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 36  TGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTII 85
           T E+  L    +N+   RL     +LW KR +I    +GFL  V W  ++
Sbjct: 207 TDEILHLVPNIDNF---RLTLRAIKLWAKRHNIYSNILGFLGGVSWAXLV 253


>pdb|1Q78|A Chain A, Crystal Structure Of Poly(A) Polymerase In Complex With
           3'- Datp And Magnesium Chloride
          Length = 514

 Score = 28.1 bits (61), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 36  TGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTII 85
           T E+  L    +N+   RL     +LW KR +I    +GFL  V W  ++
Sbjct: 207 TDEILHLVPNIDNF---RLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLV 253


>pdb|1Q79|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase
          Length = 514

 Score = 28.1 bits (61), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 48  NYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTII 85
           N  + RL     +LW KR +I    +GFL  V W  ++
Sbjct: 216 NIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLV 253


>pdb|3P3V|A Chain A, Crystal Structure Of A Pts Dependent
          N-Acetyl-Galactosamine-Iib Component (Agav, Spy_0631)
          From Streptococcus Pyogenes At 1.65 A Resolution
 pdb|3P3V|B Chain B, Crystal Structure Of A Pts Dependent
          N-Acetyl-Galactosamine-Iib Component (Agav, Spy_0631)
          From Streptococcus Pyogenes At 1.65 A Resolution
          Length = 163

 Score = 27.7 bits (60), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 9/14 (64%), Positives = 13/14 (92%)

Query: 51 DDRLLYAQGQLWLK 64
          D+RL++ QGQLW+K
Sbjct: 13 DERLIHGQGQLWVK 26


>pdb|4FYE|A Chain A, Crystal Structure Of A Legionella Phosphoinositide
          Phosphatase, Sidf
 pdb|4FYF|A Chain A, Structural Basis For Substrate Recognition By A Novel
          Legionella Phosphoinositide Phosphatase
 pdb|4FYG|A Chain A, Structural Basis For Substrate Recognition By A Novel
          Legionella Phosphoinositide Phosphatase
          Length = 761

 Score = 26.6 bits (57), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 9  GEIVVFN---VDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQ 58
          GE  VF    +DG+++ +V+     H R  TG+ +V+ +  NNY D+ +  A+
Sbjct: 36 GERQVFKDPMLDGKQVVVVNSQYDKHGRPVTGQPDVIQEA-NNYIDNLVAAAK 87


>pdb|3SHM|A Chain A, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|B Chain B, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|C Chain C, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|D Chain D, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|E Chain E, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|F Chain F, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|G Chain G, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|H Chain H, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|I Chain I, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|J Chain J, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|K Chain K, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|L Chain L, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|M Chain M, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|N Chain N, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|O Chain O, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|P Chain P, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|Q Chain Q, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|R Chain R, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|S Chain S, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|T Chain T, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
          Length = 516

 Score = 25.8 bits (55), Expect = 6.7,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 36  TGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMG 70
           TG+V V+         DR +Y QG +W K  H  G
Sbjct: 373 TGDVHVMGALPGMVWQDRDVYLQGPIWAKIPHTDG 407


>pdb|1VU0|U Chain U, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|V Chain V, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|W Chain W, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|X Chain X, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|Y Chain Y, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|Z Chain Z, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|AA Chain a, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|BB Chain b, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|CC Chain c, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|DD Chain d, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|EE Chain e, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|FF Chain f, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|GG Chain g, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|HH Chain h, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|II Chain i, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|JJ Chain j, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|KK Chain k, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|LL Chain l, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|MM Chain m, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|NN Chain n, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|OO Chain o, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|PP Chain p, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|QQ Chain q, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|RR Chain r, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|SS Chain s, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|TT Chain t, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|UU Chain u, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|VV Chain v, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|WW Chain w, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|XX Chain x, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|YY Chain y, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|ZZ Chain z, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|0 Chain 0, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|1 Chain 1, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|2 Chain 2, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|3 Chain 3, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|4 Chain 4, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|5 Chain 5, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|6 Chain 6, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|7 Chain 7, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|A Chain A, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|B Chain B, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|C Chain C, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|D Chain D, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|E Chain E, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|F Chain F, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|G Chain G, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|H Chain H, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|I Chain I, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|J Chain J, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|K Chain K, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|L Chain L, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|M Chain M, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|N Chain N, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|O Chain O, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|P Chain P, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|Q Chain Q, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|R Chain R, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|S Chain S, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|T Chain T, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
          Length = 520

 Score = 25.8 bits (55), Expect = 6.7,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 36  TGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMG 70
           TG+V V+         DR +Y QG +W K  H  G
Sbjct: 377 TGDVHVMGALPGMVWQDRDVYLQGPIWAKIPHTDG 411


>pdb|3OAH|A Chain A, Structural Characterization Of The Dual Glycan Binding
           Adeno- Associated Virus Serotype 6
          Length = 534

 Score = 25.8 bits (55), Expect = 6.7,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 36  TGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMG 70
           TG+V V+         DR +Y QG +W K  H  G
Sbjct: 391 TGDVHVMGALPGMVWQDRDVYLQGPIWAKIPHTDG 425


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.144    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,377,441
Number of Sequences: 62578
Number of extensions: 135122
Number of successful extensions: 260
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 8
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)