Query 033895
Match_columns 109
No_of_seqs 103 out of 627
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 12:28:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033895.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033895hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kca_A Repressor protein CI; g 96.0 0.028 9.6E-07 36.6 7.0 57 4-75 45-101 (109)
2 2hnf_A Repressor protein CI101 95.1 0.09 3.1E-06 35.1 7.0 57 4-75 76-132 (133)
3 1umu_A UMUD'; induced mutagene 95.1 0.053 1.8E-06 35.3 5.6 59 4-77 54-112 (116)
4 1jhf_A LEXA repressor; LEXA SO 93.7 0.25 8.7E-06 34.6 7.1 65 4-81 137-201 (202)
5 1b12_A Signal peptidase I; ser 90.5 0.35 1.2E-05 35.6 4.6 28 4-31 48-76 (248)
6 3bdn_A Lambda repressor; repre 82.1 2.2 7.4E-05 30.1 4.8 58 4-76 172-229 (236)
7 1b12_A Signal peptidase I; ser 60.4 9.1 0.00031 27.8 3.8 32 40-75 192-224 (248)
8 1wid_A DNA-binding protein RAV 58.4 8.7 0.0003 25.5 3.2 14 4-17 90-103 (130)
9 2z0t_A Putative uncharacterize 56.6 13 0.00043 24.5 3.6 26 4-33 32-57 (109)
10 3k2z_A LEXA repressor; winged 55.6 41 0.0014 23.1 6.5 57 5-76 137-193 (196)
11 1xne_A Hypothetical protein PF 54.7 14 0.00049 24.3 3.7 25 4-33 33-57 (113)
12 2k1g_A Lipoprotein SPR; soluti 53.4 8 0.00027 26.1 2.3 22 2-26 64-85 (135)
13 2jyx_A Lipoprotein SPR; soluti 52.0 9.4 0.00032 25.4 2.5 26 2-30 64-89 (136)
14 1qd7_I S17 ribosomal protein; 45.8 42 0.0014 21.2 4.7 31 2-33 46-78 (89)
15 2nwf_A Ubiquinol-cytochrome C 41.1 16 0.00054 24.6 2.3 24 4-27 9-32 (141)
16 2l8d_A Lamin-B receptor; DNA b 40.5 59 0.002 19.6 5.3 33 1-33 5-37 (66)
17 3ic8_A Uncharacterized GST-lik 40.3 1E+02 0.0035 22.2 7.1 55 4-84 252-308 (310)
18 2lkt_A Retinoic acid receptor 40.2 25 0.00086 22.7 3.1 25 2-30 4-28 (125)
19 2dig_A Lamin-B receptor; tudor 37.3 69 0.0023 19.4 5.4 33 1-33 8-40 (68)
20 2if6_A Hypothetical protein YI 36.9 52 0.0018 22.5 4.5 16 2-17 1-16 (186)
21 2vqe_Q 30S ribosomal protein S 36.7 50 0.0017 21.5 4.1 31 2-33 47-79 (105)
22 4h4j_A Hypothetical protein; P 36.1 99 0.0034 22.7 6.2 36 4-42 169-204 (240)
23 2p1g_A Putative xylanase; stru 33.8 1.1E+02 0.0039 22.7 6.2 36 4-42 170-205 (249)
24 2kij_A Copper-transporting ATP 33.0 15 0.00052 24.0 1.1 19 3-22 39-57 (124)
25 1hr0_W Translation initiation 32.9 19 0.00064 21.4 1.4 22 5-26 46-70 (71)
26 3gs9_A Protein GP18; NP_465809 32.1 1.2E+02 0.0039 23.1 6.1 31 4-34 280-310 (342)
27 1p3h_A 10 kDa chaperonin; beta 30.7 1E+02 0.0035 19.7 4.8 14 3-16 59-72 (99)
28 3r8n_Q 30S ribosomal protein S 30.7 44 0.0015 20.6 2.9 29 4-33 48-78 (80)
29 3iuw_A Activating signal coint 30.3 28 0.00097 21.8 2.0 12 4-15 36-47 (83)
30 3nx6_A 10KDA chaperonin; bacte 29.5 90 0.0031 19.8 4.4 14 3-16 56-69 (95)
31 1pcq_O Groes protein; chaperon 28.1 83 0.0028 20.0 4.0 13 4-16 57-69 (97)
32 2fjr_A Repressor protein CI; g 28.0 1.3E+02 0.0045 19.8 6.4 55 5-76 131-185 (189)
33 1hmj_A RPB5, protein (subunit 27.9 65 0.0022 19.9 3.3 25 5-29 48-74 (78)
34 1at0_A 17-hedgehog; developmen 27.6 79 0.0027 20.9 4.1 31 3-33 89-119 (145)
35 2hc8_A PACS, cation-transporti 27.5 36 0.0012 21.8 2.2 26 3-29 27-52 (113)
36 1jsd_A Haemagglutinin (HA1 cha 27.3 65 0.0022 25.0 3.9 38 6-48 227-264 (319)
37 1rie_A Rieske iron-sulfur prot 26.8 30 0.001 22.6 1.7 23 4-26 12-34 (129)
38 4gxx_A Hemagglutinin HA1 chain 26.0 68 0.0023 25.0 3.9 19 6-26 238-256 (331)
39 4hpe_A Putative cell WALL hydr 24.6 44 0.0015 25.2 2.5 28 3-30 246-274 (308)
40 1eik_A RNA polymerase subunit 24.6 63 0.0021 19.9 2.8 24 5-28 50-75 (77)
41 1we3_O CPN10(groes); chaperoni 24.5 98 0.0033 19.8 3.9 14 3-16 61-74 (100)
42 3kbg_A 30S ribosomal protein S 24.1 1.4E+02 0.0047 21.8 5.0 37 4-47 116-152 (213)
43 3cx5_E Cytochrome B-C1 complex 24.1 35 0.0012 23.9 1.8 23 4-26 69-91 (185)
44 3j20_E 30S ribosomal protein S 23.9 1.3E+02 0.0045 22.3 5.0 37 4-47 156-192 (243)
45 3aqy_A Beta-1,3-glucan-binding 23.9 58 0.002 21.0 2.7 15 2-16 65-79 (106)
46 2fhd_A RAD9 homolog, DNA repai 23.2 56 0.0019 22.8 2.6 27 4-33 62-88 (153)
47 3ie4_A GRAM-negative binding p 23.1 41 0.0014 21.8 1.8 15 2-16 64-78 (107)
48 3mea_A SAGA-associated factor 22.6 2.1E+02 0.0071 20.2 6.6 30 4-33 43-75 (180)
49 3nnf_A CURA; non-HAEM Fe(II)/a 22.5 64 0.0022 25.3 3.1 20 4-28 236-255 (344)
50 1pp9_E Ubiquinol-cytochrome C 22.4 39 0.0013 24.0 1.7 23 4-26 79-101 (196)
51 2qjy_C Ubiquinol-cytochrome C 22.4 49 0.0017 23.1 2.3 23 4-26 55-77 (187)
52 3j20_R 30S ribosomal protein S 21.9 1.6E+02 0.0056 19.2 4.7 29 4-33 78-108 (113)
53 1ah9_A IF1, initiation factor 21.6 20 0.00068 21.2 0.0 12 5-16 45-56 (71)
54 3gt2_A Putative uncharacterize 20.5 33 0.0011 22.8 1.0 14 3-16 87-100 (142)
55 3ubq_A Hemagglutinin HA1; vira 20.2 78 0.0027 24.7 3.1 19 6-26 236-254 (329)
No 1
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=96.05 E-value=0.028 Score=36.64 Aligned_cols=57 Identities=12% Similarity=0.223 Sum_probs=38.3
Q ss_pred CCCCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCCCCCCCChhhhccCccccccceEeceEEEE
Q 033895 4 DPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGF 75 (109)
Q Consensus 4 ~~~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD~N~~~D~~~y~~~~~~V~~~~v~G~v~~~ 75 (109)
.+++.||++++..++ +...++|++.. . + .+..+.||...++... . ..-+|+|+++.+
T Consensus 45 ~~~~~Gdivv~~~~~-~~~~vKrl~~~--~---~--~~~L~s~N~~y~~~~~-~------~~~~IiG~Vv~~ 101 (109)
T 1kca_A 45 QAVEPGDFCIARLGG-DEFTFKKLIRD--S---G--QVFLQPLNPQYPMIPC-N------ESCSVVGKVIAS 101 (109)
T ss_dssp SCCCTTCEEEEECST-TCEEEEEEEEE--T---T--EEEEECSSTTSCCEEC-C------TTCEEEEEEEEE
T ss_pred CcCCCCCEEEEEECC-CeEEEEEEEEe--C---C--EEEEEECCCCCCCEEc-C------CCcEEEEEEEEE
Confidence 457889999988765 35789999862 2 3 3557799766555322 1 246799999865
No 2
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=95.11 E-value=0.09 Score=35.10 Aligned_cols=57 Identities=12% Similarity=0.215 Sum_probs=37.0
Q ss_pred CCCCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCCCCCCCChhhhccCccccccceEeceEEEE
Q 033895 4 DPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGF 75 (109)
Q Consensus 4 ~~~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD~N~~~D~~~y~~~~~~V~~~~v~G~v~~~ 75 (109)
.+++.||++++..++ +...++|++.. . + .+.-+.||...++... . ..-+|+|+++.+
T Consensus 76 ~~~~~Gdivv~~~~~-~~~~vKrl~~~--~---~--~~~L~s~N~~y~~~~~-~------~~~~IiG~Vv~~ 132 (133)
T 2hnf_A 76 QAVEPGDFCIARLGG-DEFTFAKLIRD--S---G--QVFLQPLNPQYPMIPC-N------ESCSVVGKVIAS 132 (133)
T ss_dssp SCCCTTSEEEEEETT-TEEEEEEEEEE--T---T--EEEEECSSTTSCCEEC-S------TTEEEEEEEEEE
T ss_pred CCCCCCCEEEEEECC-CEEEEEEEEEe--C---C--eEEEEECCCCCCCEEc-C------CCCEEEEEEEEE
Confidence 457788888887765 34788999852 2 3 3667789766554322 1 345789998753
No 3
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=95.05 E-value=0.053 Score=35.30 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=37.4
Q ss_pred CCCCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCCCCCCCChhhhccCccccccceEeceEEEEcc
Q 033895 4 DPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLP 77 (109)
Q Consensus 4 ~~~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD~N~~~D~~~y~~~~~~V~~~~v~G~v~~~IP 77 (109)
.+++.|||+++..++. ..++|+... + .+..+.||...++... +. -..-+|+|+++..+-
T Consensus 54 ~~~~~gdivv~~~~~~--~~vKr~~~~------~--~~~L~s~N~~y~~~~i-~~----~~~~~IiG~Vv~~~r 112 (116)
T 1umu_A 54 ITASHGDIVIAAVDGE--FTVKKLQLR------P--TVQLIPMNSAYSPITI-SS----EDTLDVFGVVIHVVK 112 (116)
T ss_dssp SCCCTTCEEEEEETTE--EEEEEEECS------S--SCEEECSSTTSCCEEC-CT----TSCEEEEEEEEEEEC
T ss_pred CCCCCCCEEEEEECCE--EEEEEEEeC------C--cEEEECCCCCCCCEEc-CC----CCeEEEEEEEEEEEE
Confidence 3577888888877653 788888762 2 3667889765554322 11 012479999986643
No 4
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=93.74 E-value=0.25 Score=34.64 Aligned_cols=65 Identities=25% Similarity=0.315 Sum_probs=37.1
Q ss_pred CCCCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCCCCCCCChhhhccCccccccceEeceEEEEcccccE
Q 033895 4 DPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGW 81 (109)
Q Consensus 4 ~~~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD~N~~~D~~~y~~~~~~V~~~~v~G~v~~~IP~lG~ 81 (109)
.+++.|||+++..++. ..++|+.. .. + .+.-+.||...++- .++.. -..-.|+|+|+.++-...|
T Consensus 137 ~~~~~G~i~v~~~~~~--~~vKrl~~--~~---~--~~~l~s~N~~y~~~-~~~~~---~~~~~IiG~Vv~~~r~~~~ 201 (202)
T 1jhf_A 137 QDVRNGQVVVARIDDE--VTVKRLKK--QG---N--KVELLPENSEFKPI-VVDLR---QQSFTIEGLAVGVIRNGDW 201 (202)
T ss_dssp SCCCTTSEEEEEETTE--EEEEEEEE--ET---T--EEEEECSSTTCCCE-EEETT---TSCEEEEEEEEEEEEC---
T ss_pred CCcCCCeEEEEEECCE--EEEEEEEE--eC---C--EEEEEECCCCCCCE-EccCC---CCceEEEEEEEEEEEcccc
Confidence 3567788888876553 78899983 22 2 36667887554442 21100 0123689999876654443
No 5
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=90.48 E-value=0.35 Score=35.58 Aligned_cols=28 Identities=21% Similarity=0.438 Sum_probs=22.7
Q ss_pred CCCCcCcEEEEeeCC-ccccEEEEEEEEE
Q 033895 4 DPIRAGEIVVFNVDG-REIPIVHRVIKVH 31 (109)
Q Consensus 4 ~~~~~GDIIvf~~~g-~~~~itHRVi~v~ 31 (109)
.+++.||||+|+.+. .+...++||+..-
T Consensus 48 ~~~~rGDIvvf~~p~~~~~~~iKRViglp 76 (248)
T 1b12_A 48 GHPKRGDIVVFKYPEDPKLDYIKRAVGLP 76 (248)
T ss_dssp CCCCTTCEEEEECTTCTTSEEEEEEEECT
T ss_pred CCCCCCcEEEEEeCCCCCceEEEEEEeeC
Confidence 568999999999764 3468999999853
No 6
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=82.08 E-value=2.2 Score=30.14 Aligned_cols=58 Identities=12% Similarity=0.228 Sum_probs=33.6
Q ss_pred CCCCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCCCCCCCChhhhccCccccccceEeceEEEEc
Q 033895 4 DPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFL 76 (109)
Q Consensus 4 ~~~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD~N~~~D~~~y~~~~~~V~~~~v~G~v~~~I 76 (109)
.+++.||++++..++ +...+.|+.. .. |. ++.+.||...++- .+. ..-.|+|+|+.+.
T Consensus 172 ~~~~~g~ivv~~~~~-~~~~vKrl~~--~~---~~--~~L~s~N~~y~~~-~~~------~~~~IiG~Vv~~~ 229 (236)
T 3bdn_A 172 QAVEPGDFCIARLGG-DEFTFKKLIR--GS---GQ--VFLQPLNPQYPMI-PCN------ESCSVVGKVIASQ 229 (236)
T ss_dssp SCCCTTSEEEEESTT-TCCCCEEEEC--CS---SS--CEEECSSTTSCCB-C--------CCCEEEEEEEECC
T ss_pred CCCCCCcEEEEEECC-CeEEEEEEEE--cC---Cc--EEEEeCCCCCCCe-ecC------CCcEEEEEEEEEE
Confidence 356678877776542 2467888875 12 32 4456786544442 211 2357899998653
No 7
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=60.39 E-value=9.1 Score=27.80 Aligned_cols=32 Identities=22% Similarity=0.514 Sum_probs=24.4
Q ss_pred EEEEeCCC-CCCCChhhhccCccccccceEeceEEEE
Q 033895 40 EVLTKGDN-NYGDDRLLYAQGQLWLKRQHIMGRAVGF 75 (109)
Q Consensus 40 ~~iTKGD~-N~~~D~~~y~~~~~~V~~~~v~G~v~~~ 75 (109)
.|--=||| +++.|.-.+. +|+.++|+||+.+.
T Consensus 192 ~yFvmGDNR~nS~DSR~~G----~Vp~~~IvGka~~i 224 (248)
T 1b12_A 192 QYFMMGDNRDNSADSRYWG----FVPEANLVGRATAI 224 (248)
T ss_dssp EEEEECSBTTSCCCHHHHC----CEEGGGEEEEEEEE
T ss_pred cEEEecCCCcccCCCCccc----ccCHHHeEEEEEEE
Confidence 34455998 6888986543 39999999999864
No 8
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=58.43 E-value=8.7 Score=25.50 Aligned_cols=14 Identities=36% Similarity=0.731 Sum_probs=12.0
Q ss_pred CCCCcCcEEEEeeC
Q 033895 4 DPIRAGEIVVFNVD 17 (109)
Q Consensus 4 ~~~~~GDIIvf~~~ 17 (109)
..|++||+|+|...
T Consensus 90 ~~L~~GD~~~F~~~ 103 (130)
T 1wid_A 90 KNLRAGDVVSFSRS 103 (130)
T ss_dssp TTCCTTCEEEEEEC
T ss_pred cCCCCCCEEEEEEe
Confidence 57999999999865
No 9
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=56.58 E-value=13 Score=24.47 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=19.9
Q ss_pred CCCCcCcEEEEeeCCccccEEEEEEEEEec
Q 033895 4 DPIRAGEIVVFNVDGREIPIVHRVIKVHER 33 (109)
Q Consensus 4 ~~~~~GDIIvf~~~g~~~~itHRVi~v~~~ 33 (109)
..+++||.|+| ++ ..+.=+|+++..-
T Consensus 32 ~~ikvGD~I~f--~~--~~l~~~V~~v~~Y 57 (109)
T 2z0t_A 32 RQIKPGDIIIF--EG--GKLKVKVKGIRVY 57 (109)
T ss_dssp GGCCTTCEEEE--GG--GTEEEEEEEEEEE
T ss_pred hcCCCCCEEEE--CC--CEEEEEEEEEEcc
Confidence 35799999999 23 2588888888864
No 10
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=55.56 E-value=41 Score=23.06 Aligned_cols=57 Identities=23% Similarity=0.375 Sum_probs=28.4
Q ss_pred CCCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCCCCCCCChhhhccCccccccceEeceEEEEc
Q 033895 5 PIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFL 76 (109)
Q Consensus 5 ~~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD~N~~~D~~~y~~~~~~V~~~~v~G~v~~~I 76 (109)
+.+.|||+++..++ ...+=|+.. . ++ .+.-+-||...++ ..++ -..-.|+|+|+.++
T Consensus 137 ~~~~G~ivv~~~~~--~~~vKr~~~---~--~~--~~~L~~~N~~y~~-i~i~-----~~~~~i~G~Vv~~~ 193 (196)
T 3k2z_A 137 WAQNGDIVAAMVDG--EVTLAKFYQ---R--GD--TVELRPANREMSS-MFFR-----AEKVKILGKVVGVF 193 (196)
T ss_dssp CCCTTCEEEEEETT--EEEEEEEEE---E--TT--EEEEECSCTTSCC-EEEE-----GGGCEEEEEEEEEE
T ss_pred cCCCCCEEEEEECC--cEEEEEEEE---E--CC--EEEEEECCCCCCC-EEec-----CCCEEEEEEEEEEE
Confidence 34455555555443 245555533 2 13 3455567654433 2211 12347889988664
No 11
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=54.73 E-value=14 Score=24.33 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=20.0
Q ss_pred CCCCcCcEEEEeeCCccccEEEEEEEEEec
Q 033895 4 DPIRAGEIVVFNVDGREIPIVHRVIKVHER 33 (109)
Q Consensus 4 ~~~~~GDIIvf~~~g~~~~itHRVi~v~~~ 33 (109)
..+++||.|+|.. .+.=+|+++..-
T Consensus 33 ~~i~vGD~I~f~~-----~l~~~V~~v~~Y 57 (113)
T 1xne_A 33 KDIKRGDKIIFND-----LIPAEVVEVKKY 57 (113)
T ss_dssp TTCCTTCEEEETT-----TEEEEEEEEEEC
T ss_pred hccCCCCEEEEcc-----ceEEEEEEEEec
Confidence 4679999999964 577888888874
No 12
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=53.40 E-value=8 Score=26.11 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=15.9
Q ss_pred CCCCCCcCcEEEEeeCCccccEEEE
Q 033895 2 SKDPIRAGEIVVFNVDGREIPIVHR 26 (109)
Q Consensus 2 ~~~~~~~GDIIvf~~~g~~~~itHR 26 (109)
+.+++++||+|.|+..+ .+.|=
T Consensus 64 ~~~~l~pGDLvFf~~~~---~~~HV 85 (135)
T 2k1g_A 64 SRSNLRTGDLVLFRAGS---TGRHV 85 (135)
T ss_dssp CGGGCCTTEEEEEEETT---TEEEE
T ss_pred cHHHccCCcEEEECCCC---CCeEE
Confidence 34789999999997643 35563
No 13
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=51.95 E-value=9.4 Score=25.38 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=17.5
Q ss_pred CCCCCCcCcEEEEeeCCccccEEEEEEEE
Q 033895 2 SKDPIRAGEIVVFNVDGREIPIVHRVIKV 30 (109)
Q Consensus 2 ~~~~~~~GDIIvf~~~g~~~~itHRVi~v 30 (109)
+.+++++||+|.|...+. +.|=-|-+
T Consensus 64 ~~~~l~pGDLvff~~~~~---~~HVgIy~ 89 (136)
T 2jyx_A 64 SRSNLRTGDLVLFRAGST---GRHVGIYI 89 (136)
T ss_dssp CTTTCCTTEEEEEECSSS---SEEEEEEE
T ss_pred chHhCCCCCEEEECCCCC---CCEEEEEE
Confidence 357899999999975432 55644433
No 14
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=45.82 E-value=42 Score=21.23 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=23.0
Q ss_pred CCCCCCcCcEEEEeeCCcc--ccEEEEEEEEEec
Q 033895 2 SKDPIRAGEIVVFNVDGRE--IPIVHRVIKVHER 33 (109)
Q Consensus 2 ~~~~~~~GDIIvf~~~g~~--~~itHRVi~v~~~ 33 (109)
++.+.++||+|....- .+ ....||++++.+.
T Consensus 46 e~n~~k~GD~V~I~E~-RPlSKtK~~~vv~iv~~ 78 (89)
T 1qd7_I 46 EHNEAKVGDIVKIMET-RPLSATKRFRLVEIVEK 78 (89)
T ss_pred CccCCCCCCEEEEEEc-ccCCCCEEEEEEEEEee
Confidence 3567899999999642 11 3689999998765
No 15
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=41.13 E-value=16 Score=24.65 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.4
Q ss_pred CCCCcCcEEEEeeCCccccEEEEE
Q 033895 4 DPIRAGEIVVFNVDGREIPIVHRV 27 (109)
Q Consensus 4 ~~~~~GDIIvf~~~g~~~~itHRV 27 (109)
++|++|..++|+-.|+.++|.||=
T Consensus 9 s~l~~g~~~~v~wrgkPv~i~~rt 32 (141)
T 2nwf_A 9 SSVEPGVQLTVKFLGKPIFIRRRT 32 (141)
T ss_dssp TTCCTTEEEEEEETTEEEEEEECC
T ss_pred ccCCCCCEEEEEECCEEEEEEECC
Confidence 678999999998889989999993
No 16
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=40.53 E-value=59 Score=19.58 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=28.4
Q ss_pred CCCCCCCcCcEEEEeeCCccccEEEEEEEEEec
Q 033895 1 MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHER 33 (109)
Q Consensus 1 ~~~~~~~~GDIIvf~~~g~~~~itHRVi~v~~~ 33 (109)
|++...++||.|.=+=+|+..+.--||.+++..
T Consensus 5 mp~~~~~vgd~VmaRW~Gd~~yYparI~Si~s~ 37 (66)
T 2l8d_A 5 MPNRKYADGEVVMGRWPGSVLYYEVQVTSYDDA 37 (66)
T ss_dssp CSSSSSCSSCEEEEECTTSSCEEEEEEEEEETT
T ss_pred CCceEeecCCEEEEEcCCCccceEEEEEEeccC
Confidence 788999999999775588888999999999954
No 17
>3ic8_A Uncharacterized GST-like proteinprotein; glutathione, transferase, PSI, MCSG, structural genomics; 2.40A {Pseudomonas syringae PV}
Probab=40.25 E-value=1e+02 Score=22.17 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=36.9
Q ss_pred CCCCcCcEEEEeeC--CccccEEEEEEEEEecCCCCeeEEEEeCCCCCCCChhhhccCccccccceEeceEEEEcccccE
Q 033895 4 DPIRAGEIVVFNVD--GREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGW 81 (109)
Q Consensus 4 ~~~~~GDIIvf~~~--g~~~~itHRVi~v~~~~~~g~~~~iTKGD~N~~~D~~~y~~~~~~V~~~~v~G~v~~~IP~lG~ 81 (109)
..++.|++|+-.+. |.+ +++=+.+..+.+ +..+..+ |+ -.|.+..+.|..||
T Consensus 252 ~g~~~G~~V~v~p~d~g~~-~~~g~l~~~~~~----~~~~~~~-------~~--------------~~~~~~vh~pr~g~ 305 (310)
T 3ic8_A 252 NGFKAGDKVAIAAVDYGVE-AVEGELMFTGRE----ELILRRE-------DN--------------RAGVVHVHFPRLGF 305 (310)
T ss_dssp TCCCTTCEEEEEESSCGGG-CEEEEEEEECSS----CEEEEEE-------ET--------------TTEEEEEEECSTTE
T ss_pred ccCCCCCEEEEeeccCCCC-CCceEEEEecCc----EEEEEEe-------CC--------------CCCeEEEEcCCCCc
Confidence 46789988877654 554 888888888765 2333222 11 14778889999999
Q ss_pred EEE
Q 033895 82 VTI 84 (109)
Q Consensus 82 v~~ 84 (109)
.+.
T Consensus 306 ~~~ 308 (310)
T 3ic8_A 306 RVE 308 (310)
T ss_dssp EEE
T ss_pred eec
Confidence 764
No 18
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=40.21 E-value=25 Score=22.69 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=17.2
Q ss_pred CCCCCCcCcEEEEeeCCccccEEEEEEEE
Q 033895 2 SKDPIRAGEIVVFNVDGREIPIVHRVIKV 30 (109)
Q Consensus 2 ~~~~~~~GDIIvf~~~g~~~~itHRVi~v 30 (109)
+..+.|+||+|.+...+ ..|=-|-+
T Consensus 4 ~~~ep~pGDlI~~~r~~----Y~H~gIYv 28 (125)
T 2lkt_A 4 PHQEPKPGDLIEIFRLG----YEHWALYI 28 (125)
T ss_dssp SSCCCCTTCEEEEECSS----SCEEEEEE
T ss_pred CCCCCCCCCEEEEeCCC----ccEEEEEe
Confidence 45789999999987543 34655544
No 19
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=37.35 E-value=69 Score=19.39 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=28.4
Q ss_pred CCCCCCCcCcEEEEeeCCccccEEEEEEEEEec
Q 033895 1 MSKDPIRAGEIVVFNVDGREIPIVHRVIKVHER 33 (109)
Q Consensus 1 ~~~~~~~~GDIIvf~~~g~~~~itHRVi~v~~~ 33 (109)
|++...++||.|.=+=+|+..+.--||.+++..
T Consensus 8 mp~~~f~vgd~VmaRW~Gd~~yYparItSits~ 40 (68)
T 2dig_A 8 MPSRKFADGEVVRGRWPGSSLYYEVEILSHDST 40 (68)
T ss_dssp SCCCSSCSSCEEEEECTTTCCEEEEEEEEEETT
T ss_pred CCceEeecCCEEEEEccCCccceEEEEEEeccC
Confidence 788999999999876568888899999999954
No 20
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=36.92 E-value=52 Score=22.51 Aligned_cols=16 Identities=19% Similarity=0.086 Sum_probs=12.2
Q ss_pred CCCCCCcCcEEEEeeC
Q 033895 2 SKDPIRAGEIVVFNVD 17 (109)
Q Consensus 2 ~~~~~~~GDIIvf~~~ 17 (109)
+++++++||+|.|+..
T Consensus 1 ~~~~l~~GDlvf~~~~ 16 (186)
T 2if6_A 1 SLWQPQTGDIIFQISR 16 (186)
T ss_dssp --CCCCTTCEEEECCC
T ss_pred CcccCCCCCEEEEEcC
Confidence 4688999999999754
No 21
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=36.71 E-value=50 Score=21.50 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=22.7
Q ss_pred CCCCCCcCcEEEEeeCCcc--ccEEEEEEEEEec
Q 033895 2 SKDPIRAGEIVVFNVDGRE--IPIVHRVIKVHER 33 (109)
Q Consensus 2 ~~~~~~~GDIIvf~~~g~~--~~itHRVi~v~~~ 33 (109)
++.+.++||+|....- .+ ....|+|+++.+.
T Consensus 47 e~n~~k~GD~V~I~E~-RPlSKtKr~~vv~iv~~ 79 (105)
T 2vqe_Q 47 PEEKYKLGDVVEIIES-RPISKRKRFRVLRLVES 79 (105)
T ss_dssp TTCCCCTTCEEEEEEE-EEEETTEEEEEEEEEEC
T ss_pred CCCCCCCCCEEEEEEc-ccCCCCEEEEEEEEeec
Confidence 3467899999999642 11 2589999998765
No 22
>4h4j_A Hypothetical protein; PF07313 family protein, DUF 1460, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.15A {Bacteroides uniformis}
Probab=36.11 E-value=99 Score=22.72 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=27.8
Q ss_pred CCCCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEE
Q 033895 4 DPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVL 42 (109)
Q Consensus 4 ~~~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~i 42 (109)
+.|+.||||.+..+-.+.-|+|==+.+..+ +...|+
T Consensus 169 ~~l~~GDiIai~t~~~GLDvsH~Giai~~~---~~l~l~ 204 (240)
T 4h4j_A 169 PWIKDGDIIAITTNTPGLDVAHMGIAFYAD---NKLLLV 204 (240)
T ss_dssp TTSCTTCEEEEEECSTTCSEEEEEEEEEET---TEEEEE
T ss_pred hhCCCCcEEEEEecCCCceEEEEEEEEEEC---CeEEEE
Confidence 468999999998776667899998888765 445454
No 23
>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Bacteroides fragilis}
Probab=33.78 E-value=1.1e+02 Score=22.69 Aligned_cols=36 Identities=19% Similarity=0.419 Sum_probs=26.6
Q ss_pred CCCCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEE
Q 033895 4 DPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVL 42 (109)
Q Consensus 4 ~~~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~i 42 (109)
+.++.||+|.|..+..+.=|+|==+.+..+ |...|+
T Consensus 170 ~~l~~GDiI~i~t~~~GLDVsHvGi~i~~~---~~l~f~ 205 (249)
T 2p1g_A 170 PWIKNGDIIALTTNTPGLDVSHMGIAIYIK---GQLHLL 205 (249)
T ss_dssp TTSCTTCEEEEEECSTTCSEEEEEEEEEET---TEEEEE
T ss_pred hcCCCCCEEEEEeCCCCCceeEEEEEEEEC---CeEEEE
Confidence 579999999998775556799987777664 444454
No 24
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=33.02 E-value=15 Score=24.00 Aligned_cols=19 Identities=21% Similarity=0.508 Sum_probs=14.0
Q ss_pred CCCCCcCcEEEEeeCCcccc
Q 033895 3 KDPIRAGEIVVFNVDGREIP 22 (109)
Q Consensus 3 ~~~~~~GDIIvf~~~g~~~~ 22 (109)
.+++.+||+|..+. |..+|
T Consensus 39 ~~~l~~GDiv~v~~-G~~iP 57 (124)
T 2kij_A 39 VELVQRGDIIKVVP-GGKFP 57 (124)
T ss_dssp TTTCCTTCEEECCT-TCBCS
T ss_pred HHHCCCCCEEEECC-CCEEE
Confidence 46899999999974 54343
No 25
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=32.88 E-value=19 Score=21.44 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=13.8
Q ss_pred CCCcCcEEEEeeC---CccccEEEE
Q 033895 5 PIRAGEIVVFNVD---GREIPIVHR 26 (109)
Q Consensus 5 ~~~~GDIIvf~~~---g~~~~itHR 26 (109)
.+.+||.|.+... ...-.|+||
T Consensus 46 ~i~~GD~V~ve~~~~~~~kg~I~~r 70 (71)
T 1hr0_W 46 RILPGDRVVVEITPYDPTRGRIVYR 70 (71)
T ss_dssp CCCTTCEEEEECCTTCTTCCEECSC
T ss_pred CCCCCCEEEEEEEcCCCCEEEEEEe
Confidence 3569999999753 112356655
No 26
>3gs9_A Protein GP18; NP_465809.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MLY MSE; 1.70A {Listeria monocytogenes egd-e}
Probab=32.05 E-value=1.2e+02 Score=23.07 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=25.4
Q ss_pred CCCCcCcEEEEeeCCccccEEEEEEEEEecC
Q 033895 4 DPIRAGEIVVFNVDGREIPIVHRVIKVHERQ 34 (109)
Q Consensus 4 ~~~~~GDIIvf~~~g~~~~itHRVi~v~~~~ 34 (109)
.+++.||.|.+....-++-+..||+++....
T Consensus 280 ~~~~lGD~V~v~~~~lgi~~~~RIv~~~~~~ 310 (342)
T 3gs9_A 280 YECEXGDYVLFIYEPLGIDYDVQIVAYXXYP 310 (342)
T ss_dssp -CCCTTCEEEEEETTTTEEEEEEEEEEEECT
T ss_pred cCCCCCCEEEEEecCCCceeEEEEEEEeccC
Confidence 4678999998877766678999999999874
No 27
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=30.74 E-value=1e+02 Score=19.68 Aligned_cols=14 Identities=14% Similarity=0.399 Sum_probs=11.4
Q ss_pred CCCCCcCcEEEEee
Q 033895 3 KDPIRAGEIVVFNV 16 (109)
Q Consensus 3 ~~~~~~GDIIvf~~ 16 (109)
|-++++||.|.|..
T Consensus 59 p~~VkvGD~Vlf~k 72 (99)
T 1p3h_A 59 PLDVAEGDTVIYSK 72 (99)
T ss_dssp CCSCCTTCEEEEEC
T ss_pred ccccCCCCEEEECC
Confidence 34699999999964
No 28
>3r8n_Q 30S ribosomal protein S17; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_Q 3fih_Q* 3iy8_Q 3j18_Q* 2wwl_Q 3oar_Q 3oaq_Q 3ofb_Q 3ofa_Q 3ofp_Q 3ofx_Q 3ofy_Q 3ofo_Q 3r8o_Q 4a2i_Q 4gd1_Q 4gd2_Q 3i1m_Q 1vs7_Q* 3e1a_J ...
Probab=30.71 E-value=44 Score=20.62 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=21.0
Q ss_pred CCCCcCcEEEEee--CCccccEEEEEEEEEec
Q 033895 4 DPIRAGEIVVFNV--DGREIPIVHRVIKVHER 33 (109)
Q Consensus 4 ~~~~~GDIIvf~~--~g~~~~itHRVi~v~~~ 33 (109)
.+.++||+|.... |=+ .-..||++++.+.
T Consensus 48 n~~~~GD~V~I~e~RPlS-Ktk~~~v~~i~~~ 78 (80)
T 3r8n_Q 48 NECGIGDVVEIRECRPLS-KTKSWTLVRVVEK 78 (80)
T ss_dssp GCCCTTCEEEEEEEEEEE-TTEEEEEEEEECC
T ss_pred CCCCCCCEEEEEEeccCC-CcEeEEEEEEEEe
Confidence 5789999999864 211 3688999988754
No 29
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=30.31 E-value=28 Score=21.79 Aligned_cols=12 Identities=17% Similarity=0.625 Sum_probs=10.2
Q ss_pred CCCCcCcEEEEe
Q 033895 4 DPIRAGEIVVFN 15 (109)
Q Consensus 4 ~~~~~GDIIvf~ 15 (109)
.++++||+++|.
T Consensus 36 r~~~vGD~l~l~ 47 (83)
T 3iuw_A 36 RNFQVGDILILE 47 (83)
T ss_dssp SCCCTTCEEEEE
T ss_pred cCCCCCCEEEEE
Confidence 359999999995
No 30
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=29.46 E-value=90 Score=19.79 Aligned_cols=14 Identities=14% Similarity=0.494 Sum_probs=11.4
Q ss_pred CCCCCcCcEEEEee
Q 033895 3 KDPIRAGEIVVFNV 16 (109)
Q Consensus 3 ~~~~~~GDIIvf~~ 16 (109)
|-++++||-|.|..
T Consensus 56 p~~VkvGD~Vl~~k 69 (95)
T 3nx6_A 56 APVVKVGDKVIYGQ 69 (95)
T ss_dssp CCSCCTTCEEEECT
T ss_pred ccccCCCCEEEECC
Confidence 34799999999964
No 31
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=28.12 E-value=83 Score=20.04 Aligned_cols=13 Identities=38% Similarity=0.741 Sum_probs=11.0
Q ss_pred CCCCcCcEEEEee
Q 033895 4 DPIRAGEIVVFNV 16 (109)
Q Consensus 4 ~~~~~GDIIvf~~ 16 (109)
-++++||.|.|..
T Consensus 57 ~~VkvGD~Vlf~k 69 (97)
T 1pcq_O 57 LDVKVGDIVIFND 69 (97)
T ss_dssp CSCCTTCEEEECC
T ss_pred cccCCCCEEEECC
Confidence 4689999999965
No 32
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=27.97 E-value=1.3e+02 Score=19.82 Aligned_cols=55 Identities=13% Similarity=0.251 Sum_probs=31.9
Q ss_pred CCCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCCCCCCCChhhhccCccccccceEeceEEEEc
Q 033895 5 PIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFL 76 (109)
Q Consensus 5 ~~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD~N~~~D~~~y~~~~~~V~~~~v~G~v~~~I 76 (109)
+...|+|+++..++. ..+-|+.. ... + .+.-+-|| + |...+ ...=.|+|+|+.++
T Consensus 131 ~~~~g~i~vv~~~g~--~~vKrl~~-~~~---~--~i~L~s~N-~---~~~i~-----~~~i~IiG~Vv~~~ 185 (189)
T 2fjr_A 131 ASLSDGLWLVDIKGA--ISIRELTK-LPG---R--KLHVAGGK-V---PFECG-----IDDIKTLGRVVGVY 185 (189)
T ss_dssp CCSCSEEEEEEETTE--EEEEEEEE-ETT---T--EEEEESSS-S---CEEEE-----TTSSEEEEEEEEEE
T ss_pred CccCCCEEEEEeCCe--EEEEEEEE-CCC---C--EEEEEeCC-C---CeEec-----ccceEEEEEEEEEE
Confidence 456788888877663 66777765 211 2 35556776 3 22211 12346899998654
No 33
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=27.87 E-value=65 Score=19.90 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=16.1
Q ss_pred CCCcCcEEEEe--eCCccccEEEEEEE
Q 033895 5 PIRAGEIVVFN--VDGREIPIVHRVIK 29 (109)
Q Consensus 5 ~~~~GDIIvf~--~~g~~~~itHRVi~ 29 (109)
.++.||||--- ++..+..++=|++-
T Consensus 48 G~k~GdVvkI~R~S~taG~~v~YR~Vv 74 (78)
T 1hmj_A 48 GAKEGDVVRVIRKSPTAGVSIAYRLVI 74 (78)
T ss_pred CCCCCCEEEEEECCCCCCCcEEEEEEE
Confidence 46899998554 33344578877653
No 34
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=27.58 E-value=79 Score=20.93 Aligned_cols=31 Identities=23% Similarity=0.113 Sum_probs=20.9
Q ss_pred CCCCCcCcEEEEeeCCccccEEEEEEEEEec
Q 033895 3 KDPIRAGEIVVFNVDGREIPIVHRVIKVHER 33 (109)
Q Consensus 3 ~~~~~~GDIIvf~~~g~~~~itHRVi~v~~~ 33 (109)
.+++++||-|.......+.+..-||.++...
T Consensus 89 A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~~ 119 (145)
T 1at0_A 89 ADRIEEKNQVLVRDVETGELRPQRVVKVGSV 119 (145)
T ss_dssp GGGCCTTCEEEEECTTTCCEEEEEEEEEEEE
T ss_pred HHHCcCCCEEEEecCCCCCEEEEEEEEEEEE
Confidence 3689999988665432234777778877654
No 35
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=27.47 E-value=36 Score=21.81 Aligned_cols=26 Identities=27% Similarity=0.588 Sum_probs=17.9
Q ss_pred CCCCCcCcEEEEeeCCccccEEEEEEE
Q 033895 3 KDPIRAGEIVVFNVDGREIPIVHRVIK 29 (109)
Q Consensus 3 ~~~~~~GDIIvf~~~g~~~~itHRVi~ 29 (109)
.+++.+||+|..+. |..+|.==|+++
T Consensus 27 ~~~l~~GDiv~v~~-G~~iPaDg~v~~ 52 (113)
T 2hc8_A 27 VEEVAVGDIVIVRP-GEKIPVDGVVVE 52 (113)
T ss_dssp GGGCCTTCEEEECT-TCBCCSEEEEEE
T ss_pred HHHCCCCCEEEECC-CCEEeeeEEEEE
Confidence 47899999999964 655555444444
No 36
>1jsd_A Haemagglutinin (HA1 chain); viral protein; HET: NAG; 1.80A {Influenza a virus} SCOP: b.19.1.2 PDB: 1jsh_A* 1jsi_A*
Probab=27.28 E-value=65 Score=25.03 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=23.0
Q ss_pred CCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCCCC
Q 033895 6 IRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNN 48 (109)
Q Consensus 6 ~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD~N 48 (109)
+++||.++|...|. +|.=|-.-.-..+ |+ .-+.|.|++
T Consensus 227 lkPGdti~f~snGn--lIAP~~~~~~~~~--g~-s~i~~s~~~ 264 (319)
T 1jsd_A 227 LKPGQTLRVRSNGN--LIAPWYGHILSGE--SH-GRILKTDLN 264 (319)
T ss_dssp ECTTCEEEEEESSS--EEEECEEEEEESC--CC-CCEECCCCC
T ss_pred ecCCCeEEEEECCc--ccccceeeeeeec--CC-CceeecCCc
Confidence 68999999999886 6665533333221 11 125666664
No 37
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=26.84 E-value=30 Score=22.60 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=18.4
Q ss_pred CCCCcCcEEEEeeCCccccEEEE
Q 033895 4 DPIRAGEIVVFNVDGREIPIVHR 26 (109)
Q Consensus 4 ~~~~~GDIIvf~~~g~~~~itHR 26 (109)
+++++|+..++...+..+.++||
T Consensus 12 s~l~~G~~~~v~~~g~pv~v~r~ 34 (129)
T 1rie_A 12 SDIPEGKNMAFKWRGKPLFVRHR 34 (129)
T ss_dssp GGSCTTCEEEEEETTEEEEEEEC
T ss_pred HHCCCCCEEEEEECCeEEEEEEC
Confidence 57889999999877776777765
No 38
>4gxx_A Hemagglutinin HA1 chain; viral fusion protein, virus attachment and entry, viral PROT; HET: NAG BMA MAN; 1.80A {Influenza a virus} PDB: 3gbn_A* 3lzf_A* 3r2x_A* 4eef_A* 4gxu_A* 1rd8_A* 2wrg_H* 1ruz_H* 1rv0_H* 1rvt_H* 1ruy_H* 3hto_A* 3htp_A* 3htq_A* 3htt_A* 2wrh_H* 3m6s_A* 4f3z_A* 3lzg_A* 3al4_A* ...
Probab=25.96 E-value=68 Score=25.02 Aligned_cols=19 Identities=21% Similarity=0.515 Sum_probs=15.6
Q ss_pred CCcCcEEEEeeCCccccEEEE
Q 033895 6 IRAGEIVVFNVDGREIPIVHR 26 (109)
Q Consensus 6 ~~~GDIIvf~~~g~~~~itHR 26 (109)
+++||.|+|...|. +|.=|
T Consensus 238 lkPGdti~f~snGn--lIAP~ 256 (331)
T 4gxx_A 238 LEPGDTITFEATGN--LIAPW 256 (331)
T ss_dssp ECTTCEEEEEESSC--EEEEC
T ss_pred ecCCCeEEEEeCCC--ccCch
Confidence 68999999999886 66555
No 39
>4hpe_A Putative cell WALL hydrolase TN916-like,CTN1-ORF1; two domains protein, SLT/lysozyme-like muramidase, NLPC/P60 endopeptidase; 2.38A {Clostridium difficile}
Probab=24.60 E-value=44 Score=25.21 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=18.7
Q ss_pred CCCCCcCcEEEEeeC-CccccEEEEEEEE
Q 033895 3 KDPIRAGEIVVFNVD-GREIPIVHRVIKV 30 (109)
Q Consensus 3 ~~~~~~GDIIvf~~~-g~~~~itHRVi~v 30 (109)
.+++++||+|.|... .....+.|=-|-+
T Consensus 246 ~~~l~pGDLvff~~~~~~~~~~~HVgIy~ 274 (308)
T 4hpe_A 246 LSQAKAGDLVFFHSTYNAGSYVTHVGIYV 274 (308)
T ss_dssp GGGCCTTCEEEEECSSSCSSSEEEEEEEC
T ss_pred hhhCCCCCEEEEcCCCCCCCCccEEEEEE
Confidence 468999999999753 2223577755543
No 40
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=24.58 E-value=63 Score=19.91 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=15.0
Q ss_pred CCCcCcEEEE--eeCCccccEEEEEE
Q 033895 5 PIRAGEIVVF--NVDGREIPIVHRVI 28 (109)
Q Consensus 5 ~~~~GDIIvf--~~~g~~~~itHRVi 28 (109)
.++.||||-- +++..+..++=|++
T Consensus 50 G~k~GdVvkI~R~S~taG~~v~YR~V 75 (77)
T 1eik_A 50 GAKRGDIVKIIRKSPTAEEFVTYRLV 75 (77)
T ss_dssp GCCTTCEEEEEEEETTTEEEEEEEEC
T ss_pred CCCCCCEEEEEECCCCCCCcEEEEEE
Confidence 3678999854 34444456777754
No 41
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=24.45 E-value=98 Score=19.83 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=11.4
Q ss_pred CCCCCcCcEEEEee
Q 033895 3 KDPIRAGEIVVFNV 16 (109)
Q Consensus 3 ~~~~~~GDIIvf~~ 16 (109)
|-++++||.|.|..
T Consensus 61 p~~VkvGD~Vlf~k 74 (100)
T 1we3_O 61 PLEVKEGDIVVFAK 74 (100)
T ss_dssp CCSCCTTCEEEECT
T ss_pred eeecCCCCEEEECC
Confidence 34799999999964
No 42
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=24.12 E-value=1.4e+02 Score=21.78 Aligned_cols=37 Identities=19% Similarity=0.442 Sum_probs=27.2
Q ss_pred CCCCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCCC
Q 033895 4 DPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDN 47 (109)
Q Consensus 4 ~~~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD~ 47 (109)
..++++|-|.++.+.+. |.+..+-+ .|+.+++|.|-|
T Consensus 116 ~~ik~~Dtv~idl~~~k------I~d~ikf~-~G~l~mvtgG~n 152 (213)
T 3kbg_A 116 KSIKVGDVLAVSVPDMK------ISEIIKMQ-PGNKAYITAGSH 152 (213)
T ss_dssp TTCCTTCEEEEETTTCC------EEEEECCS-TTCEEEECSSTT
T ss_pred CCcccCCEEEEECCCCc------eeeEEEcC-CCCEEEEECCCc
Confidence 57999999999987542 44555543 488999998765
No 43
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=24.06 E-value=35 Score=23.87 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=18.1
Q ss_pred CCCCcCcEEEEeeCCccccEEEE
Q 033895 4 DPIRAGEIVVFNVDGREIPIVHR 26 (109)
Q Consensus 4 ~~~~~GDIIvf~~~g~~~~itHR 26 (109)
+++++|+.+++...|..+.|.||
T Consensus 69 s~l~~G~~~~v~~~g~pv~v~r~ 91 (185)
T 3cx5_E 69 AAIPLGKNVVVKWQGKPVFIRHR 91 (185)
T ss_dssp GGCCTTCEEEEEETTEEEEEEEC
T ss_pred HHCCCCCeEEEEECCeEEEEEEC
Confidence 46788999998877777777776
No 44
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.95 E-value=1.3e+02 Score=22.30 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=27.0
Q ss_pred CCCCcCcEEEEeeCCccccEEEEEEEEEecCCCCeeEEEEeCCC
Q 033895 4 DPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDN 47 (109)
Q Consensus 4 ~~~~~GDIIvf~~~g~~~~itHRVi~v~~~~~~g~~~~iTKGD~ 47 (109)
..++++|-|.++.+.. .|++..+-+ .|+.+++|.|-|
T Consensus 156 ~~ik~~Dtv~idl~~~------kI~d~ikf~-~G~l~mvtgG~n 192 (243)
T 3j20_E 156 DNYFTSYTVLMKVPER------EILEVLPFE-KGAYVFVTQGKN 192 (243)
T ss_dssp SSCSSCEEEEEETTTT------EEEEEEECC-TTCEEEECSSSS
T ss_pred CCcccCCEEEEECCCC------CeeeEEecc-CCCEEEEECCcc
Confidence 4689999999998754 244555543 378999998765
No 45
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor, sugar bindi protein; 1.58A {Plodia interpunctella} PDB: 3aqz_A* 3aqx_A* 2rqe_A
Probab=23.95 E-value=58 Score=21.01 Aligned_cols=15 Identities=13% Similarity=0.313 Sum_probs=11.9
Q ss_pred CCCCCCcCcEEEEee
Q 033895 2 SKDPIRAGEIVVFNV 16 (109)
Q Consensus 2 ~~~~~~~GDIIvf~~ 16 (109)
+...|+.||+|-|+.
T Consensus 65 ~~~~lk~GD~i~Yw~ 79 (106)
T 3aqy_A 65 RNVKLKLGDKIYFWT 79 (106)
T ss_dssp CSCCCCTTCEEEEEE
T ss_pred CceEeCCCCEEEEEE
Confidence 346789999998875
No 46
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=23.18 E-value=56 Score=22.77 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=20.5
Q ss_pred CCCCcCcEEEEeeCCccccEEEEEEEEEec
Q 033895 4 DPIRAGEIVVFNVDGREIPIVHRVIKVHER 33 (109)
Q Consensus 4 ~~~~~GDIIvf~~~g~~~~itHRVi~v~~~ 33 (109)
-++++||+|--. +- --++|.|+.....
T Consensus 62 LeLRiGD~VKVd--~v-pK~~hiVvGf~~~ 88 (153)
T 2fhd_A 62 FFLKKGDVVQST--RL-GKIKHTVVKTFRS 88 (153)
T ss_dssp SCCCTTCEEEET--TS-TTCCEEEEEEECC
T ss_pred eeeecCCEEEEC--CC-CCccEEEEEeccc
Confidence 589999999776 21 2499999998743
No 47
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=23.10 E-value=41 Score=21.85 Aligned_cols=15 Identities=7% Similarity=0.328 Sum_probs=12.5
Q ss_pred CCCCCCcCcEEEEee
Q 033895 2 SKDPIRAGEIVVFNV 16 (109)
Q Consensus 2 ~~~~~~~GDIIvf~~ 16 (109)
+...|+.||+|-|+.
T Consensus 64 ~~~~lk~GD~I~Ywv 78 (107)
T 3ie4_A 64 RITALKPGDTLYYWT 78 (107)
T ss_dssp SSCCCCTTCEEEEEE
T ss_pred CCceeCCCCEEEEEE
Confidence 457899999999975
No 48
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=22.62 E-value=2.1e+02 Score=20.20 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=22.7
Q ss_pred CCCCcCcEEEEeeC---CccccEEEEEEEEEec
Q 033895 4 DPIRAGEIVVFNVD---GREIPIVHRVIKVHER 33 (109)
Q Consensus 4 ~~~~~GDIIvf~~~---g~~~~itHRVi~v~~~ 33 (109)
..+++||-|+|+.. +.+.+|.=+|+++..+
T Consensus 43 ~~~~~G~~VAakvk~~~~~~~WILa~Vv~~~~~ 75 (180)
T 3mea_A 43 YVARPGDKVAARVKAVDGDEQWILAEVVSYSHA 75 (180)
T ss_dssp CCCCTTCEEEEEEECCC--EEEEEEEEEEEETT
T ss_pred cccCCCCEEEEEcCCCCCCccEEEEEEEEEcCC
Confidence 47899999999863 3357999999987643
No 49
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A
Probab=22.47 E-value=64 Score=25.30 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=16.4
Q ss_pred CCCCcCcEEEEeeCCccccEEEEEE
Q 033895 4 DPIRAGEIVVFNVDGREIPIVHRVI 28 (109)
Q Consensus 4 ~~~~~GDIIvf~~~g~~~~itHRVi 28 (109)
.++++||+|.|+. .+.|+-.
T Consensus 236 wd~epGDav~F~~-----~tlHga~ 255 (344)
T 3nnf_A 236 DEYNLGDAFFFNK-----YVLHQSV 255 (344)
T ss_dssp CCBCTTCEEEEET-----TCEEEEC
T ss_pred ccCCCCcEEEEec-----ceeecCC
Confidence 4679999999974 6888876
No 50
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=22.44 E-value=39 Score=23.99 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=18.8
Q ss_pred CCCCcCcEEEEeeCCccccEEEE
Q 033895 4 DPIRAGEIVVFNVDGREIPIVHR 26 (109)
Q Consensus 4 ~~~~~GDIIvf~~~g~~~~itHR 26 (109)
+++++|+.++|+-.|..+.|+||
T Consensus 79 s~l~~G~~~~v~~~G~pV~V~r~ 101 (196)
T 1pp9_E 79 SDIPEGKNMAFKWRGKPLFVRHR 101 (196)
T ss_dssp GGSCTTCEEEEEETTEEEEEEEC
T ss_pred HHCCCCCeEEEEECCEEEEEEEC
Confidence 56889999999888877777776
No 51
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=22.42 E-value=49 Score=23.11 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=17.8
Q ss_pred CCCCcCcEEEEeeCCccccEEEE
Q 033895 4 DPIRAGEIVVFNVDGREIPIVHR 26 (109)
Q Consensus 4 ~~~~~GDIIvf~~~g~~~~itHR 26 (109)
+++++|..++|+-.|..+.|.||
T Consensus 55 s~l~~G~~~~v~~~g~pv~i~rr 77 (187)
T 2qjy_C 55 SSVEPGVQLTVKFLGKPIFIRRR 77 (187)
T ss_dssp TTCCTTEEEEEEETTEEEEEEEC
T ss_pred HHCCCCCeEEEEECCEEEEEEEC
Confidence 56788888888877777777776
No 52
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.90 E-value=1.6e+02 Score=19.24 Aligned_cols=29 Identities=21% Similarity=0.127 Sum_probs=22.0
Q ss_pred CCCCcCcEEEEee--CCccccEEEEEEEEEec
Q 033895 4 DPIRAGEIVVFNV--DGREIPIVHRVIKVHER 33 (109)
Q Consensus 4 ~~~~~GDIIvf~~--~g~~~~itHRVi~v~~~ 33 (109)
.+.++||+|.... |=+ .-.-|||+++.+.
T Consensus 78 n~~~vGD~V~I~E~RPlS-KtKr~~vv~i~~~ 108 (113)
T 3j20_R 78 INAKVGDKVLIAETRPLS-KTKHFVVVAVLER 108 (113)
T ss_dssp SCCCTTSEEEEEECSCSS-SSEEEEEEEECCC
T ss_pred CCCCCCCEEEEEecccCC-CcEeEEEEEEEec
Confidence 5789999999964 211 3688999998765
No 53
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=21.57 E-value=20 Score=21.22 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=9.4
Q ss_pred CCCcCcEEEEee
Q 033895 5 PIRAGEIVVFNV 16 (109)
Q Consensus 5 ~~~~GDIIvf~~ 16 (109)
.+.+||.|.+..
T Consensus 45 ~i~vGD~V~ve~ 56 (71)
T 1ah9_A 45 RILTGDKVTVEL 56 (71)
T ss_dssp CCCTTCEECCEE
T ss_pred cCCCCCEEEEEE
Confidence 356899999975
No 54
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=20.45 E-value=33 Score=22.81 Aligned_cols=14 Identities=14% Similarity=0.539 Sum_probs=11.5
Q ss_pred CCCCCcCcEEEEee
Q 033895 3 KDPIRAGEIVVFNV 16 (109)
Q Consensus 3 ~~~~~~GDIIvf~~ 16 (109)
.+++++||+|.|..
T Consensus 87 ~~~~~pGDlvff~~ 100 (142)
T 3gt2_A 87 PQQARKGDLIFYGP 100 (142)
T ss_dssp GGGCCTTCEEEESG
T ss_pred hhhCCCCCEEEeCC
Confidence 46899999998864
No 55
>3ubq_A Hemagglutinin HA1; viral envelope protein, viral fusion protein, protein-immune system complex; HET: NAG SIA GAL; 2.00A {Influenza a virus} PDB: 3ubj_A* 3ubn_A* 3ube_A* 3lzg_A* 3ztn_A* 3al4_A* 3lyj_A* 3m6s_A* 3gbn_A* 3lzf_A* 3r2x_A* 1ruy_H* 1rd8_A* 1rvt_H* 1rv0_H* 2wrg_H* 1ruz_H* 3hto_A* 3htp_A* 3htq_A* ...
Probab=20.24 E-value=78 Score=24.69 Aligned_cols=19 Identities=26% Similarity=0.646 Sum_probs=15.3
Q ss_pred CCcCcEEEEeeCCccccEEEE
Q 033895 6 IRAGEIVVFNVDGREIPIVHR 26 (109)
Q Consensus 6 ~~~GDIIvf~~~g~~~~itHR 26 (109)
+++||.++|...|. +|.=|
T Consensus 236 lkPgdti~f~snGn--lIAP~ 254 (329)
T 3ubq_A 236 VEPGDKITFEATGN--LVVPR 254 (329)
T ss_dssp ECTTCEEEEEESSC--EEEES
T ss_pred ecCCCeEEEEECCc--ccccc
Confidence 68999999998886 56554
Done!