Query 033896
Match_columns 109
No_of_seqs 132 out of 1062
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:31:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 6.7E-47 1.4E-51 247.7 10.7 109 1-109 1-110 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 1.1E-45 2.4E-50 237.8 8.8 104 6-109 2-105 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 1.7E-43 3.7E-48 222.8 8.3 108 2-109 1-108 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 1.1E-41 2.3E-46 224.6 12.4 105 5-109 2-106 (152)
5 PLN00172 ubiquitin conjugating 100.0 2.5E-41 5.3E-46 221.9 12.2 104 6-109 2-105 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 7.7E-39 1.7E-43 206.9 9.7 109 1-109 1-123 (171)
7 KOG0421 Ubiquitin-protein liga 100.0 6.2E-39 1.3E-43 205.0 6.5 107 3-109 27-133 (175)
8 KOG0426 Ubiquitin-protein liga 100.0 4.9E-38 1.1E-42 198.4 8.1 108 2-109 1-122 (165)
9 PF00179 UQ_con: Ubiquitin-con 100.0 1.2E-37 2.6E-42 202.8 8.7 100 9-108 1-102 (140)
10 KOG0418 Ubiquitin-protein liga 100.0 1.4E-37 3E-42 206.3 8.5 104 6-109 4-111 (200)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 8.4E-37 1.8E-41 199.1 11.0 102 7-108 1-103 (141)
12 KOG0424 Ubiquitin-protein liga 100.0 8.1E-37 1.7E-41 195.0 8.9 107 2-108 1-114 (158)
13 smart00212 UBCc Ubiquitin-conj 100.0 3.5E-35 7.6E-40 192.2 11.1 101 8-108 1-103 (145)
14 KOG0427 Ubiquitin conjugating 100.0 1.6E-34 3.5E-39 182.2 8.7 105 4-109 14-119 (161)
15 KOG0894 Ubiquitin-protein liga 100.0 2.3E-34 5E-39 194.6 9.4 106 1-108 1-109 (244)
16 KOG0422 Ubiquitin-protein liga 100.0 3.1E-33 6.7E-38 177.8 7.6 103 5-108 2-106 (153)
17 KOG0423 Ubiquitin-protein liga 100.0 3.3E-31 7.1E-36 174.2 4.5 105 4-108 9-113 (223)
18 KOG0416 Ubiquitin-protein liga 100.0 1.3E-29 2.7E-34 166.1 6.4 99 6-107 4-103 (189)
19 KOG0420 Ubiquitin-protein liga 100.0 5.9E-29 1.3E-33 163.2 6.2 102 4-108 27-132 (184)
20 KOG0428 Non-canonical ubiquiti 99.9 2.8E-25 6.2E-30 153.3 7.9 103 4-109 10-115 (314)
21 KOG0895 Ubiquitin-conjugating 99.8 2.2E-19 4.8E-24 143.0 5.5 105 5-109 851-964 (1101)
22 KOG0429 Ubiquitin-conjugating 99.8 6.4E-18 1.4E-22 115.3 8.7 98 9-107 23-124 (258)
23 KOG0895 Ubiquitin-conjugating 99.7 3.4E-17 7.3E-22 130.8 9.4 107 3-109 280-397 (1101)
24 KOG0896 Ubiquitin-conjugating 99.6 1.9E-14 4.2E-19 91.5 7.1 107 2-108 2-115 (138)
25 KOG0897 Predicted ubiquitin-co 98.8 1.1E-09 2.4E-14 68.1 1.2 55 54-108 13-69 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.6 1.2E-07 2.7E-12 61.2 5.0 58 50-107 34-97 (133)
27 PF08694 UFC1: Ubiquitin-fold 98.5 5.3E-08 1.2E-12 62.9 1.9 100 5-107 24-135 (161)
28 PF05743 UEV: UEV domain; Int 98.0 1.6E-05 3.5E-10 50.6 5.3 70 33-107 31-108 (121)
29 KOG3357 Uncharacterized conser 97.8 3E-05 6.4E-10 49.7 4.2 95 5-105 27-136 (167)
30 PF05773 RWD: RWD domain; Int 97.0 0.0028 6.1E-08 38.8 5.7 69 8-77 4-74 (113)
31 smart00591 RWD domain in RING 96.6 0.025 5.4E-07 34.3 7.5 27 50-76 39-65 (107)
32 KOG2391 Vacuolar sorting prote 96.4 0.022 4.7E-07 42.1 7.1 70 33-107 51-128 (365)
33 PF14457 Prok-E2_A: Prokaryoti 94.6 0.27 5.8E-06 32.9 6.9 53 55-107 56-117 (162)
34 PF14462 Prok-E2_E: Prokaryoti 94.4 0.22 4.7E-06 31.8 5.8 53 23-76 12-66 (122)
35 KOG0309 Conserved WD40 repeat- 92.5 0.82 1.8E-05 37.6 7.4 67 8-76 423-491 (1081)
36 KOG4018 Uncharacterized conser 89.1 2 4.3E-05 30.0 6.0 22 53-74 50-71 (215)
37 PF09765 WD-3: WD-repeat regio 83.6 4 8.6E-05 29.8 5.5 60 6-74 100-159 (291)
38 PF06113 BRE: Brain and reprod 73.4 6.3 0.00014 29.4 3.9 27 52-79 306-332 (333)
39 smart00340 HALZ homeobox assoc 70.5 4.1 8.9E-05 21.1 1.7 14 7-20 21-34 (44)
40 cd00421 intradiol_dioxygenase 66.9 12 0.00025 24.4 3.8 25 50-74 64-89 (146)
41 PF14460 Prok-E2_D: Prokaryoti 66.3 3 6.5E-05 28.0 0.9 19 75-93 90-111 (175)
42 cd03457 intradiol_dioxygenase_ 63.2 14 0.00031 25.2 3.8 24 51-74 86-109 (188)
43 COG3140 Uncharacterized protei 61.2 13 0.00028 20.4 2.6 25 1-25 28-52 (60)
44 TIGR03737 PRTRC_B PRTRC system 59.6 4.9 0.00011 28.4 1.0 18 76-93 132-152 (228)
45 PF06113 BRE: Brain and reprod 59.5 17 0.00036 27.2 3.8 42 34-81 53-95 (333)
46 cd03459 3,4-PCD Protocatechuat 57.0 22 0.00047 23.6 3.8 25 51-75 72-101 (158)
47 PF03366 YEATS: YEATS family; 46.9 59 0.0013 19.1 5.1 42 35-78 2-43 (84)
48 PF00779 BTK: BTK motif; Inte 46.3 8.8 0.00019 18.6 0.4 15 77-91 2-17 (32)
49 TIGR02423 protocat_alph protoc 43.0 45 0.00097 22.9 3.7 24 51-74 96-124 (193)
50 PF14455 Metal_CEHH: Predicted 43.0 75 0.0016 21.3 4.5 65 8-76 8-76 (177)
51 KOG3285 Spindle assembly check 42.5 52 0.0011 22.6 3.8 42 5-46 119-160 (203)
52 KOG3470 Beta-tubulin folding c 41.5 17 0.00038 22.5 1.3 21 1-21 61-81 (107)
53 PF11745 DUF3304: Protein of u 41.3 16 0.00035 22.8 1.2 21 84-104 49-69 (118)
54 PF04881 Adeno_GP19K: Adenovir 41.0 33 0.00071 22.2 2.5 30 30-59 43-73 (139)
55 cd03463 3,4-PCD_alpha Protocat 40.1 54 0.0012 22.3 3.7 24 51-74 92-120 (185)
56 PF00845 Gemini_BL1: Geminivir 39.4 98 0.0021 22.4 4.9 48 32-80 100-156 (276)
57 PF12065 DUF3545: Protein of u 39.1 22 0.00049 19.7 1.4 11 8-18 37-47 (59)
58 smart00107 BTK Bruton's tyrosi 38.0 14 0.0003 18.3 0.4 15 77-91 7-22 (36)
59 COG3866 PelB Pectate lyase [Ca 37.7 73 0.0016 23.8 4.2 40 35-75 197-240 (345)
60 KOG4445 Uncharacterized conser 37.5 46 0.00099 24.8 3.1 25 52-76 45-69 (368)
61 PF14135 DUF4302: Domain of un 35.5 1.5E+02 0.0033 20.6 5.8 71 4-85 8-102 (235)
62 cd05845 Ig2_L1-CAM_like Second 33.6 1.1E+02 0.0024 18.4 4.4 26 49-76 16-41 (95)
63 cd08904 START_STARD6-like Lipi 33.3 1.4E+02 0.0031 20.5 5.0 57 1-63 1-57 (204)
64 PF13950 Epimerase_Csub: UDP-g 32.1 22 0.00048 19.6 0.7 14 95-108 36-49 (62)
65 COG2819 Predicted hydrolase of 32.1 92 0.002 22.6 4.0 31 46-76 15-47 (264)
66 PRK15486 hpaC 4-hydroxyphenyla 32.1 34 0.00074 22.9 1.7 66 10-94 6-76 (170)
67 KOG0700 Protein phosphatase 2C 31.4 1.6E+02 0.0034 22.7 5.2 74 9-87 249-331 (390)
68 KOG3678 SARM protein (with ste 31.1 11 0.00023 30.0 -1.0 47 1-51 510-556 (832)
69 PF09929 DUF2161: Uncharacteri 31.0 45 0.00097 21.2 2.0 21 4-24 26-46 (118)
70 PF08758 Cadherin_pro: Cadheri 30.4 1.1E+02 0.0024 18.2 3.6 47 40-90 12-58 (90)
71 PRK05114 hypothetical protein; 30.2 49 0.0011 18.3 1.8 21 1-21 28-48 (59)
72 KOG1814 Predicted E3 ubiquitin 29.6 57 0.0012 25.3 2.7 22 54-75 76-98 (445)
73 PF06468 Spond_N: Spondin_N; 29.3 47 0.001 22.8 2.0 25 53-77 3-34 (196)
74 PRK00396 rnpA ribonuclease P; 28.9 86 0.0019 20.0 3.1 23 5-27 64-86 (130)
75 KOG1047 Bifunctional leukotrie 28.5 65 0.0014 26.0 2.9 29 47-76 248-279 (613)
76 PF15572 Imm26: Immunity prote 28.3 72 0.0016 19.5 2.5 26 44-74 7-32 (96)
77 PF04314 DUF461: Protein of un 28.0 89 0.0019 19.1 3.0 27 36-62 77-103 (110)
78 TIGR01239 galT_2 galactose-1-p 27.6 58 0.0013 25.7 2.4 26 49-83 356-386 (489)
79 cd03464 3,4-PCD_beta Protocate 26.9 1.2E+02 0.0025 21.4 3.7 24 51-74 122-152 (220)
80 KOG0177 20S proteasome, regula 26.9 18 0.00039 24.9 -0.3 23 85-107 135-157 (200)
81 TIGR02439 catechol_proteo cate 26.6 1.1E+02 0.0025 22.3 3.7 24 51-74 180-221 (285)
82 PF12259 DUF3609: Protein of u 26.2 48 0.001 25.0 1.8 26 6-31 33-58 (361)
83 TIGR02422 protocat_beta protoc 25.9 1.2E+02 0.0027 21.2 3.7 24 51-74 117-147 (220)
84 PF09458 H_lectin: H-type lect 25.7 1.1E+02 0.0025 16.7 3.0 22 53-75 2-23 (72)
85 COG4957 Predicted transcriptio 25.5 36 0.00079 22.2 0.9 17 54-70 104-120 (148)
86 cd03461 1,2-HQD Hydroxyquinol 25.5 1.2E+02 0.0027 22.1 3.7 24 51-74 172-213 (277)
87 TIGR02296 HpaC 4-hydroxyphenyl 25.5 44 0.00096 21.8 1.3 29 66-94 36-67 (154)
88 PF02970 TBCA: Tubulin binding 24.3 70 0.0015 19.0 1.9 15 5-19 7-21 (90)
89 TIGR02438 catachol_actin catec 24.0 1.4E+02 0.003 21.9 3.7 24 51-74 184-225 (281)
90 PRK11700 hypothetical protein; 24.0 2.5E+02 0.0054 19.3 5.5 69 33-107 87-182 (187)
91 KOG3696 Aspartyl beta-hydroxyl 23.8 63 0.0014 24.1 1.9 25 61-85 302-326 (334)
92 PF06305 DUF1049: Protein of u 23.2 68 0.0015 17.5 1.7 15 6-20 49-63 (68)
93 PRK05270 galactose-1-phosphate 23.1 80 0.0017 25.0 2.5 26 49-83 359-389 (493)
94 PRK04390 rnpA ribonuclease P; 23.0 1.2E+02 0.0026 18.9 2.9 22 5-26 62-83 (120)
95 PF05751 FixH: FixH; InterPro 22.9 2.1E+02 0.0045 18.0 5.4 54 9-63 44-97 (146)
96 cd03460 1,2-CTD Catechol 1,2 d 22.6 1.5E+02 0.0033 21.7 3.7 24 51-74 176-217 (282)
97 COG4468 GalT Galactose-1-phosp 22.1 85 0.0018 24.4 2.4 24 50-82 362-390 (503)
98 KOG1976 Inositol polyphosphate 21.5 49 0.0011 24.8 1.0 16 52-67 309-324 (391)
99 COG2847 Copper(I)-binding prot 21.4 2E+02 0.0044 19.0 3.8 28 36-63 104-131 (151)
100 TIGR03615 RutF pyrimidine util 21.3 62 0.0014 21.1 1.4 66 12-94 4-72 (156)
101 PF08411 Exonuc_X-T_C: Exonucl 21.0 38 0.00083 24.4 0.4 33 60-93 21-54 (269)
102 PF08675 RNA_bind: RNA binding 20.6 89 0.0019 18.7 1.8 20 43-64 1-20 (87)
103 TIGR02465 chlorocat_1_2 chloro 20.1 1.9E+02 0.0042 20.6 3.8 25 50-74 149-191 (246)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-47 Score=247.75 Aligned_cols=109 Identities=53% Similarity=1.031 Sum_probs=105.6
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCeEEEeCCC-CCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCcc
Q 033896 1 MASGNLPRRIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (109)
Q Consensus 1 m~s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~H 79 (109)
|++..+.+||++|++++++++++++++.+.++ |+++|+++|.||++||||||.|+++|.||++||++||+|+|.++|||
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 77788999999999999999999999999877 99999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeccCCCCCCccccchhhhhcC
Q 033896 80 PNIDKLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 80 pnv~~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
|||+.+|+||+++|.++|+|++++++||++
T Consensus 81 PNV~~~G~vCLdIL~~~WsP~~~l~sILls 110 (153)
T COG5078 81 PNVDPSGNVCLDILKDRWSPVYTLETILLS 110 (153)
T ss_pred CCcCCCCCChhHHHhCCCCccccHHHHHHH
Confidence 999999999999999999999999999874
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-45 Score=237.83 Aligned_cols=104 Identities=65% Similarity=1.128 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccccCC
Q 033896 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 85 (109)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~~~ 85 (109)
+.+||.+|++++++++++||.+.++++|+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||++.
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~ 81 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN 81 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCCCCCCccccchhhhhcC
Q 033896 86 GRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 86 G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
|.||+|+|.++|+|+.+|++||+|
T Consensus 82 G~IclDILk~~WsPAl~i~~Vlls 105 (148)
T KOG0417|consen 82 GRICLDILKDQWSPALTISKVLLS 105 (148)
T ss_pred ccchHHhhhccCChhhHHHHHHHH
Confidence 999999999999999999999875
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-43 Score=222.78 Aligned_cols=108 Identities=44% Similarity=0.906 Sum_probs=104.4
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCcccc
Q 033896 2 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (109)
Q Consensus 2 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpn 81 (109)
++..+.|||++|+++++++++.|+++.|.++|++.|+++|+||++|||+||+|++.|.|+++||.+||.|+|.+..||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCCCccccchhhhhcC
Q 033896 82 IDKLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 82 v~~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
||.+|.+|+|+|+-.|+|.|++.+||+|
T Consensus 81 vya~G~iClDiLqNrWsp~Ydva~ILts 108 (152)
T KOG0419|consen 81 VYADGSICLDILQNRWSPTYDVASILTS 108 (152)
T ss_pred cCCCCcchHHHHhcCCCCchhHHHHHHH
Confidence 9999999999999999999999999874
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.1e-41 Score=224.64 Aligned_cols=105 Identities=70% Similarity=1.229 Sum_probs=101.6
Q ss_pred ChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccccC
Q 033896 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (109)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~~ 84 (109)
++.|||++|++++++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 ~~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~ 81 (152)
T PTZ00390 2 SISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK 81 (152)
T ss_pred cHHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCCCCCCccccchhhhhcC
Q 033896 85 LGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 85 ~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
+|.||+++|.++|+|++++++||++
T Consensus 82 ~G~iCl~iL~~~W~p~~ti~~iL~~ 106 (152)
T PTZ00390 82 LGRICLDILKDKWSPALQIRTVLLS 106 (152)
T ss_pred CCeEECccCcccCCCCCcHHHHHHH
Confidence 9999999999999999999999864
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=2.5e-41 Score=221.90 Aligned_cols=104 Identities=53% Similarity=1.000 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccccCC
Q 033896 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 85 (109)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~~~ 85 (109)
+.+||++|++++++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~ 81 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN 81 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCC
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCCCCCCccccchhhhhcC
Q 033896 86 GRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 86 G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
|.||+++|.++|+|++++++||++
T Consensus 82 G~iCl~il~~~W~p~~ti~~il~~ 105 (147)
T PLN00172 82 GSICLDILRDQWSPALTVSKVLLS 105 (147)
T ss_pred CEEEcccCcCCCCCcCcHHHHHHH
Confidence 999999999999999999999864
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-39 Score=206.88 Aligned_cols=109 Identities=36% Similarity=0.774 Sum_probs=102.8
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCeEEEeC-CCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCcc
Q 033896 1 MASGNLPRRIVKETQRLLSEPAPGISASPA-EDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (109)
Q Consensus 1 m~s~~~~~Rl~~E~~~l~~~~~~~~~~~~~-~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~H 79 (109)
|++.++..-|+++|++|++++.+|+.+... +.|+++|.|.|+||++|+|+||.|+..+.||.+||.+||+++|.++++|
T Consensus 1 m~~~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwH 80 (171)
T KOG0425|consen 1 MTSSQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWH 80 (171)
T ss_pred CccchhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcC
Confidence 778888889999999999999999999875 5599999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeccCCC-------------CCCccccchhhhhcC
Q 033896 80 PNIDKLGRICLDILK-------------DKWSPALQIRTVLLR 109 (109)
Q Consensus 80 pnv~~~G~icl~~l~-------------~~W~p~~~i~~il~~ 109 (109)
||||++|.+|+++|. +.|+|.+++++||+|
T Consensus 81 PNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllS 123 (171)
T KOG0425|consen 81 PNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLS 123 (171)
T ss_pred CCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHH
Confidence 999999999999993 469999999999985
No 7
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-39 Score=204.97 Aligned_cols=107 Identities=45% Similarity=0.809 Sum_probs=104.2
Q ss_pred CCChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccc
Q 033896 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (109)
Q Consensus 3 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv 82 (109)
.+.+.|||++|+..|+....+||++.|+++|++.|.++|.||++|+|+|..|++.+.||.+||++||.|+|.++.|||||
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNV 106 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNV 106 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCccccchhhhhcC
Q 033896 83 DKLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
+..|+||+|+|.++|+..|++++||+|
T Consensus 107 D~~GnIcLDILkdKWSa~YdVrTILLS 133 (175)
T KOG0421|consen 107 DLSGNICLDILKDKWSAVYDVRTILLS 133 (175)
T ss_pred cccccchHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999975
No 8
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-38 Score=198.41 Aligned_cols=108 Identities=41% Similarity=0.832 Sum_probs=102.0
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCeEEEe-CCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccc
Q 033896 2 ASGNLPRRIVKETQRLLSEPAPGISASP-AEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHP 80 (109)
Q Consensus 2 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hp 80 (109)
+++.++|||++|++++..++++||.+.| +++|.++|.+.|.||++|+|+||.|..++.||.|||.+||+++|.-.+|||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 3567899999999999999999999987 578999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeccCCC-------------CCCccccchhhhhcC
Q 033896 81 NIDKLGRICLDILK-------------DKWSPALQIRTVLLR 109 (109)
Q Consensus 81 nv~~~G~icl~~l~-------------~~W~p~~~i~~il~~ 109 (109)
||+.+|++|+++|. +.|+|..+++.||+|
T Consensus 81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLS 122 (165)
T KOG0426|consen 81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLS 122 (165)
T ss_pred cccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHH
Confidence 99999999999993 479999999999975
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=1.2e-37 Score=202.76 Aligned_cols=100 Identities=56% Similarity=1.079 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEeCCC-CCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccccCCCc
Q 033896 9 RIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGR 87 (109)
Q Consensus 9 Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~~~G~ 87 (109)
||++|+++++++++.|+.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999999999999999886 9999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCC-CCccccchhhhhc
Q 033896 88 ICLDILKD-KWSPALQIRTVLL 108 (109)
Q Consensus 88 icl~~l~~-~W~p~~~i~~il~ 108 (109)
+|+++|.. .|+|++++.+||+
T Consensus 81 icl~~l~~~~W~p~~~i~~il~ 102 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILL 102 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHH
T ss_pred chhhhhhcccCCcccccccHHH
Confidence 99999974 5999999999986
No 10
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-37 Score=206.30 Aligned_cols=104 Identities=46% Similarity=0.945 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHHhcCC---CCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccc
Q 033896 6 LPRRIVKETQRLLSEP---APGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (109)
Q Consensus 6 ~~~Rl~~E~~~l~~~~---~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv 82 (109)
+.+|+++|.+++.+++ ..|+.+...++|+.+..+.|.||++||||||.|.++|.+|++||++||+|+|.|+||||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV 83 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV 83 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence 8899999999999998 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred cC-CCceeccCCCCCCccccchhhhhcC
Q 033896 83 DK-LGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 83 ~~-~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
.+ +|.||+|+|.+.|++++|++++|+|
T Consensus 84 Ss~tGaICLDilkd~Wa~slTlrtvLis 111 (200)
T KOG0418|consen 84 SSQTGAICLDILKDQWAASLTLRTVLIS 111 (200)
T ss_pred CcccccchhhhhhcccchhhhHHHHHHH
Confidence 87 8999999999999999999999875
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=8.4e-37 Score=199.06 Aligned_cols=102 Identities=56% Similarity=1.056 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccccCCC
Q 033896 7 PRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLG 86 (109)
Q Consensus 7 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~~~G 86 (109)
.|||++|++++++++.+|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||.|+|.++++||||+.+|
T Consensus 1 ~~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G 80 (141)
T cd00195 1 SKRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENG 80 (141)
T ss_pred CchHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCC-Cccccchhhhhc
Q 033896 87 RICLDILKDK-WSPALQIRTVLL 108 (109)
Q Consensus 87 ~icl~~l~~~-W~p~~~i~~il~ 108 (109)
.+|++++... |+|++++++||+
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~ 103 (141)
T cd00195 81 KICLSILKTHGWSPAYTLRTVLL 103 (141)
T ss_pred CCchhhcCCCCcCCcCcHHHHHH
Confidence 9999999876 999999999986
No 12
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-37 Score=195.03 Aligned_cols=107 Identities=36% Similarity=0.741 Sum_probs=100.3
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCeEEEeCC-----CCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecC
Q 033896 2 ASGNLPRRIVKETQRLLSEPAPGISASPAE-----DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (109)
Q Consensus 2 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~-----~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~ 76 (109)
+|..++.||++|-+.+.++.+-|+++.|.. .|++.|.+.|.|+++|+||||.|.+++.||++||.+||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 466778999999999999999999998743 479999999999999999999999999999999999999999999
Q ss_pred CccccccCCCceeccCCCCC--Cccccchhhhhc
Q 033896 77 IYHPNIDKLGRICLDILKDK--WSPALQIRTVLL 108 (109)
Q Consensus 77 i~Hpnv~~~G~icl~~l~~~--W~p~~~i~~il~ 108 (109)
+||||||.+|.|||++|.+. |+|+.+|.+||+
T Consensus 81 l~HPNVypsgtVcLsiL~e~~~W~paitikqiL~ 114 (158)
T KOG0424|consen 81 LFHPNVYPSGTVCLSILNEEKDWRPAITIKQILL 114 (158)
T ss_pred CcCCCcCCCCcEehhhhccccCCCchhhHHHHHH
Confidence 99999999999999999654 999999999986
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=3.5e-35 Score=192.20 Aligned_cols=101 Identities=56% Similarity=1.095 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhcCCCCCeEEEeCCC-CCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccccCCC
Q 033896 8 RRIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLG 86 (109)
Q Consensus 8 ~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~~~G 86 (109)
+||++|++++++++.+|+.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||.+||+|+|.++++||||+.+|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 6999999999999999999988775 999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCC-CCCccccchhhhhc
Q 033896 87 RICLDILK-DKWSPALQIRTVLL 108 (109)
Q Consensus 87 ~icl~~l~-~~W~p~~~i~~il~ 108 (109)
.+|++++. ++|+|++++++||.
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~ 103 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLL 103 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHH
Confidence 99999998 89999999999985
No 14
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-34 Score=182.19 Aligned_cols=105 Identities=33% Similarity=0.659 Sum_probs=99.9
Q ss_pred CChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCC-ccccc
Q 033896 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI-YHPNI 82 (109)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i-~Hpnv 82 (109)
+.+.+||+||+.+++.+++.|+... ..+|+.+|.+.+.|.+||.|+|..|.+++.||+.||++.|+|.|..++ .||+|
T Consensus 14 ~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHi 92 (161)
T KOG0427|consen 14 KIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHI 92 (161)
T ss_pred HHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCce
Confidence 3577899999999999999999988 678999999999999999999999999999999999999999999987 89999
Q ss_pred cCCCceeccCCCCCCccccchhhhhcC
Q 033896 83 DKLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
|.+|.||+++|.++|+|++++.+|++|
T Consensus 93 YSNGHICL~iL~d~WsPAmsv~SvClS 119 (161)
T KOG0427|consen 93 YSNGHICLDILYDSWSPAMSVQSVCLS 119 (161)
T ss_pred ecCCeEEEEeecccCCcchhhHHHHHH
Confidence 999999999999999999999999764
No 15
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-34 Score=194.58 Aligned_cols=106 Identities=32% Similarity=0.657 Sum_probs=98.6
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccc
Q 033896 1 MASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHP 80 (109)
Q Consensus 1 m~s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hp 80 (109)
||++.+.|||+||++.|+++|++++.++|.++|+++||.+|.||++|||+||.|+.++.||++||++||.|++.|+- .
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPN--G 78 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPN--G 78 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCC--C
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999973 3
Q ss_pred cccCCCceeccCC---CCCCccccchhhhhc
Q 033896 81 NIDKLGRICLDIL---KDKWSPALQIRTVLL 108 (109)
Q Consensus 81 nv~~~G~icl~~l---~~~W~p~~~i~~il~ 108 (109)
++-.+.++||++. .+.|+|+++|.+||.
T Consensus 79 RFktntRLCLSiSDfHPdsWNP~WsVStILt 109 (244)
T KOG0894|consen 79 RFKTNTRLCLSISDFHPDSWNPGWSVSTILT 109 (244)
T ss_pred ceecCceEEEeccccCcCcCCCcccHHHHHH
Confidence 3344579999887 489999999999985
No 16
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-33 Score=177.80 Aligned_cols=103 Identities=37% Similarity=0.761 Sum_probs=96.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCeE-EEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCcccccc
Q 033896 5 NLPRRIVKETQRLLSEPAPGIS-ASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 83 (109)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~~~-~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~ 83 (109)
.+.+||++|+.++++++...+. +..+++|++.|.+.|. |++.||..|.|+++|.||.+|||+||+|.|.|.||||||+
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 4679999999999999887663 6678999999999999 8999999999999999999999999999999999999999
Q ss_pred CCCceeccCC-CCCCccccchhhhhc
Q 033896 84 KLGRICLDIL-KDKWSPALQIRTVLL 108 (109)
Q Consensus 84 ~~G~icl~~l-~~~W~p~~~i~~il~ 108 (109)
+.|.+|+.++ .++|.|+..+++||+
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlq 106 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQ 106 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHH
Confidence 9999999998 689999999999985
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.3e-31 Score=174.23 Aligned_cols=105 Identities=41% Similarity=0.775 Sum_probs=102.1
Q ss_pred CChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCcccccc
Q 033896 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 83 (109)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~ 83 (109)
+..+|.+.+|++.+...|+.||.|.+.++|+....+.|.||.+|||++|.|++.+.+..|||.+||+-.|.|+||||||.
T Consensus 9 p~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa 88 (223)
T KOG0423|consen 9 PNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA 88 (223)
T ss_pred hHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCCCccccchhhhhc
Q 033896 84 KLGRICLDILKDKWSPALQIRTVLL 108 (109)
Q Consensus 84 ~~G~icl~~l~~~W~p~~~i~~il~ 108 (109)
.+|.||...|..+|+|..+|+.||+
T Consensus 89 aNGEICVNtLKkDW~p~LGirHvLl 113 (223)
T KOG0423|consen 89 ANGEICVNTLKKDWNPSLGIRHVLL 113 (223)
T ss_pred cCceehhhhhhcccCcccchhhHhh
Confidence 9999999999999999999999986
No 18
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-29 Score=166.11 Aligned_cols=99 Identities=39% Similarity=0.838 Sum_probs=91.4
Q ss_pred hhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccccC-
Q 033896 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK- 84 (109)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~~- 84 (109)
..||+-.|..+|... +..+...++++.+++|.+.||+++||+||++++++.+|++||++.|.|.|.++||||||+.
T Consensus 4 ~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred cccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 347899999888764 4578888999999999999999999999999999999999999999999999999999997
Q ss_pred CCceeccCCCCCCccccchhhhh
Q 033896 85 LGRICLDILKDKWSPALQIRTVL 107 (109)
Q Consensus 85 ~G~icl~~l~~~W~p~~~i~~il 107 (109)
+|.||++.+.+.|+|.|++..|+
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIf 103 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIF 103 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHH
Confidence 89999999999999999988775
No 19
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.9e-29 Score=163.16 Aligned_cols=102 Identities=37% Similarity=0.751 Sum_probs=87.1
Q ss_pred CChhHHHHHHHHHHhcCCCCCeEEE----eCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCcc
Q 033896 4 GNLPRRIVKETQRLLSEPAPGISAS----PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (109)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~~~~~----~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~H 79 (109)
..++-||++|..++ +.+++++.. +.+.+..++.++|. |+++.|+||.|+|.+.+|+.||++||+|+|.++|||
T Consensus 27 s~a~lrl~~di~el--nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~H 103 (184)
T KOG0420|consen 27 SAALLRLKKDILEL--NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYH 103 (184)
T ss_pred cHHHHHHHhhhhhc--cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecccc
Confidence 34555777777777 666777633 23333345999999 999999999999999999999999999999999999
Q ss_pred ccccCCCceeccCCCCCCccccchhhhhc
Q 033896 80 PNIDKLGRICLDILKDKWSPALQIRTVLL 108 (109)
Q Consensus 80 pnv~~~G~icl~~l~~~W~p~~~i~~il~ 108 (109)
|||+.+|.||+++|+++|+|+.++.+|+.
T Consensus 104 PNId~~GnVCLnILRedW~P~lnL~sIi~ 132 (184)
T KOG0420|consen 104 PNIDLDGNVCLNILREDWRPVLNLNSIIY 132 (184)
T ss_pred CCcCCcchHHHHHHHhcCccccchHHHHH
Confidence 99999999999999999999999999974
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.8e-25 Score=153.26 Aligned_cols=103 Identities=35% Similarity=0.681 Sum_probs=91.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCcccccc
Q 033896 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 83 (109)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~ 83 (109)
..+.|||++|.++++ +|...+-+.+.++|+++|+++|+||.+|=|+||+|+.+|.||.+||++||.+-.+|+- ..+-
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpN--GRFE 86 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPN--GRFE 86 (314)
T ss_pred CHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCC--Ccee
Confidence 467899999999997 7888888999999999999999999999999999999999999999999999999863 3344
Q ss_pred CCCceeccCC---CCCCccccchhhhhcC
Q 033896 84 KLGRICLDIL---KDKWSPALQIRTVLLR 109 (109)
Q Consensus 84 ~~G~icl~~l---~~~W~p~~~i~~il~~ 109 (109)
.+-.||+++. .+.|.|+|+|++.|++
T Consensus 87 ~nkKiCLSISgyHPEtWqPSWSiRTALlA 115 (314)
T KOG0428|consen 87 VNKKICLSISGYHPETWQPSWSIRTALLA 115 (314)
T ss_pred eCceEEEEecCCCccccCcchhHHHHHHH
Confidence 4568999988 4889999999998763
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.2e-19 Score=143.04 Aligned_cols=105 Identities=30% Similarity=0.628 Sum_probs=95.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecC--Cccccc
Q 033896 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK--IYHPNI 82 (109)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~--i~Hpnv 82 (109)
++.+..+.|++-+..+.+.|++|+..++.+....+.|.||.+|||++|.|.|.+.||++||.+||.+...+. .++||.
T Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnl 930 (1101)
T KOG0895|consen 851 QWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNL 930 (1101)
T ss_pred HHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccc
Confidence 345566778888888899999999999999999999999999999999999999999999999999999986 489999
Q ss_pred cCCCceeccCCC-------CCCccccchhhhhcC
Q 033896 83 DKLGRICLDILK-------DKWSPALQIRTVLLR 109 (109)
Q Consensus 83 ~~~G~icl~~l~-------~~W~p~~~i~~il~~ 109 (109)
|.+|++|+++|. +.|+|+-++.+||+|
T Consensus 931 y~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s 964 (1101)
T KOG0895|consen 931 YEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVS 964 (1101)
T ss_pred ccccceehhhhccccCCCccccCcchhHHHHHHH
Confidence 999999999995 569999889999864
No 22
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=6.4e-18 Score=115.27 Aligned_cols=98 Identities=26% Similarity=0.458 Sum_probs=87.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCC--CCCeEEEecCCccccccC-C
Q 033896 9 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPM--SAPKVRFLTKIYHPNIDK-L 85 (109)
Q Consensus 9 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~--~pP~v~f~~~i~Hpnv~~-~ 85 (109)
.|+.|+..+.+.+.+|++|.|+-.|-+.|.++|++ ..+.|.||+|+|+|.+|++||. ..|+|.|.+.++||+|.+ +
T Consensus 23 ~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~s 101 (258)
T KOG0429|consen 23 ALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKS 101 (258)
T ss_pred HHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCc
Confidence 58889999999999999999999999999999994 6778999999999999999995 499999999999999997 8
Q ss_pred CceeccCCCCCCccccc-hhhhh
Q 033896 86 GRICLDILKDKWSPALQ-IRTVL 107 (109)
Q Consensus 86 G~icl~~l~~~W~p~~~-i~~il 107 (109)
+.+|++-....|...-+ |.+||
T Consensus 102 keLdl~raf~eWRk~ehhiwqvL 124 (258)
T KOG0429|consen 102 KELDLNRAFPEWRKEEHHIWQVL 124 (258)
T ss_pred cceeHhhhhhhhhccccHHHHHH
Confidence 89999877666966544 77776
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.4e-17 Score=130.75 Aligned_cols=107 Identities=33% Similarity=0.710 Sum_probs=98.6
Q ss_pred CCChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecC---Ccc
Q 033896 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK---IYH 79 (109)
Q Consensus 3 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~---i~H 79 (109)
++...+|+++|++-+.++.++|+.+.+.+..+...++.|.||.+|||++|.|.|+|.||..||..||.+++.+. .+.
T Consensus 280 s~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~n 359 (1101)
T KOG0895|consen 280 SKNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLN 359 (1101)
T ss_pred chhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeec
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999987 489
Q ss_pred ccccCCCceeccCCC-------CCCccc-cchhhhhcC
Q 033896 80 PNIDKLGRICLDILK-------DKWSPA-LQIRTVLLR 109 (109)
Q Consensus 80 pnv~~~G~icl~~l~-------~~W~p~-~~i~~il~~ 109 (109)
||.|.+|+||+++|. +.|+|. -++.++|++
T Consensus 360 PNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~s 397 (1101)
T KOG0895|consen 360 PNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLES 397 (1101)
T ss_pred CCcccCceEEeeeeeecccccccCCCccccchhhhhhh
Confidence 999999999999983 579998 668777753
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.9e-14 Score=91.47 Aligned_cols=107 Identities=22% Similarity=0.344 Sum_probs=84.0
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCeE-EEeC-CCC--CceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCC
Q 033896 2 ASGNLPRRIVKETQRLLSEPAPGIS-ASPA-EDN--MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI 77 (109)
Q Consensus 2 ~s~~~~~Rl~~E~~~l~~~~~~~~~-~~~~-~~~--~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i 77 (109)
+--...-||.+|+.+=++-..+|.. -... .+| +..|...|.||+.|+||+.+|.++|...++||..||.|+|.+++
T Consensus 2 ~~vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tki 81 (138)
T KOG0896|consen 2 VKVPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKI 81 (138)
T ss_pred CccccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEe
Confidence 3344556899999887665544443 2222 233 56899999999999999999999999999999999999999999
Q ss_pred ccccccC-CCceeccCC--CCCCccccchhhhhc
Q 033896 78 YHPNIDK-LGRICLDIL--KDKWSPALQIRTVLL 108 (109)
Q Consensus 78 ~Hpnv~~-~G~icl~~l--~~~W~p~~~i~~il~ 108 (109)
--.-|+. +|.+.-..+ -.+|.-+|+++.+|.
T Consensus 82 nm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~ 115 (138)
T KOG0896|consen 82 NMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLG 115 (138)
T ss_pred eecccccCCCccCccccchhhcccccchhhHHHH
Confidence 7777765 667765444 378999999999875
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.1e-09 Score=68.09 Aligned_cols=55 Identities=24% Similarity=0.537 Sum_probs=45.9
Q ss_pred EEEEEecCCCCCCCCCeEEEecCCc-cccccCCCceeccCC-CCCCccccchhhhhc
Q 033896 54 FKLELFLPEDYPMSAPKVRFLTKIY-HPNIDKLGRICLDIL-KDKWSPALQIRTVLL 108 (109)
Q Consensus 54 ~~~~i~f~~~YP~~pP~v~f~~~i~-Hpnv~~~G~icl~~l-~~~W~p~~~i~~il~ 108 (109)
.-+.+.|+++||+.||.++...++. ..-|-.+|.||+.++ .++|+.+|+|+.+++
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~ 69 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIM 69 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHH
Confidence 4567889999999999999987652 334557899999999 588999999999876
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.57 E-value=1.2e-07 Score=61.17 Aligned_cols=58 Identities=33% Similarity=0.751 Sum_probs=50.9
Q ss_pred CCcEEEEEEecCCCCCCCCCeEEEecCC---ccccccCCCceec---cCCCCCCccccchhhhh
Q 033896 50 EGGVFKLELFLPEDYPMSAPKVRFLTKI---YHPNIDKLGRICL---DILKDKWSPALQIRTVL 107 (109)
Q Consensus 50 ~g~~~~~~i~f~~~YP~~pP~v~f~~~i---~Hpnv~~~G~icl---~~l~~~W~p~~~i~~il 107 (109)
.|+.+.++|.+|++||..||.|....+. +=|||+.+|.+|+ +...+.|.|.-.+.++|
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l 97 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCL 97 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHH
Confidence 6899999999999999999999998764 5789999999999 67678899987777665
No 27
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.50 E-value=5.3e-08 Score=62.91 Aligned_cols=100 Identities=20% Similarity=0.201 Sum_probs=50.2
Q ss_pred ChhHHHHHHHHHHhc-------CCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCC
Q 033896 5 NLPRRIVKETQRLLS-------EPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI 77 (109)
Q Consensus 5 ~~~~Rl~~E~~~l~~-------~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i 77 (109)
.+..||.+|++.|-+ +....+.+. ++.+=..|.+.-.--.+ ...-.|.+++.+|..||..||.+..-.--
T Consensus 24 ~W~~RLKEEy~aLI~Yv~~nK~~DndWF~le-sn~~GT~W~GkCW~~h~--l~kYEF~~eFdIP~tYP~t~pEi~lPeLd 100 (161)
T PF08694_consen 24 LWVQRLKEEYQALIKYVENNKENDNDWFRLE-SNKEGTRWFGKCWYIHN--LLKYEFDLEFDIPVTYPTTAPEIALPELD 100 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---EEEE-E-TTSSEEEEEEEEEET--TEEEEEEEEEE--TTTTTS----B-GGGT
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeEEec-cCCCCCccccEEEEEee--eeeEEEeeecCCCccCCCCCcceeccccC
Confidence 467899999998754 233455555 33344555554321000 01135777888899999999999775432
Q ss_pred -ccccccCCCceeccCCC----CCCccccchhhhh
Q 033896 78 -YHPNIDKLGRICLDILK----DKWSPALQIRTVL 107 (109)
Q Consensus 78 -~Hpnv~~~G~icl~~l~----~~W~p~~~i~~il 107 (109)
--.-.|.+|.||++... ..-.|.++|...|
T Consensus 101 GKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 101 GKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 23456789999999874 2346777766553
No 28
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.02 E-value=1.6e-05 Score=50.62 Aligned_cols=70 Identities=26% Similarity=0.526 Sum_probs=44.4
Q ss_pred CCceeEEEEECCCCCCCCCcEEE--EEEecCCCCCCCCCeEEEecCC-----ccccccCCCceeccCCCCCCcc-ccchh
Q 033896 33 NMRYFNVMILGPSQSPYEGGVFK--LELFLPEDYPMSAPKVRFLTKI-----YHPNIDKLGRICLDILKDKWSP-ALQIR 104 (109)
Q Consensus 33 ~~~~w~~~i~gp~~tpy~g~~~~--~~i~f~~~YP~~pP~v~f~~~i-----~Hpnv~~~G~icl~~l~~~W~p-~~~i~ 104 (109)
.++...++|. -.|+|..|. +.|-+|.+||.+||.+...... -+.+|+.+|++.+..| ++|++ ..++.
T Consensus 31 ~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~ 105 (121)
T PF05743_consen 31 LLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLV 105 (121)
T ss_dssp EEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HH
T ss_pred eEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHH
Confidence 3455555554 257777774 6677899999999999886442 2449999999988877 56766 66666
Q ss_pred hhh
Q 033896 105 TVL 107 (109)
Q Consensus 105 ~il 107 (109)
+++
T Consensus 106 ~lv 108 (121)
T PF05743_consen 106 DLV 108 (121)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 29
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=3e-05 Score=49.67 Aligned_cols=95 Identities=21% Similarity=0.315 Sum_probs=60.4
Q ss_pred ChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCC----------cEEEEEEecCCCCCCCCCeEEEe
Q 033896 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEG----------GVFKLELFLPEDYPMSAPKVRFL 74 (109)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g----------~~~~~~i~f~~~YP~~pP~v~f~ 74 (109)
.+..||.+|++.+-+ +++...++-..|.-.-.-+++|-|-| -.|.+++.+|-.||..+|.+...
T Consensus 27 ~wvqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialp 100 (167)
T KOG3357|consen 27 LWVQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALP 100 (167)
T ss_pred HHHHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccc
Confidence 457899999999865 23333334444544444477777766 34677778899999999998664
Q ss_pred cCC-ccccccCCCceeccCCC-CCC---ccccchhh
Q 033896 75 TKI-YHPNIDKLGRICLDILK-DKW---SPALQIRT 105 (109)
Q Consensus 75 ~~i-~Hpnv~~~G~icl~~l~-~~W---~p~~~i~~ 105 (109)
.-- -.-..+..|.||+.-.. .-| .|..+|..
T Consensus 101 eldgktakmyrggkiclt~hfkplwarn~pkfgiah 136 (167)
T KOG3357|consen 101 ELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAH 136 (167)
T ss_pred ccCchhhhhhcCceEeeccccchhhhhcCcchhHHH
Confidence 321 12245678999997553 345 34444443
No 30
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=97.02 E-value=0.0028 Score=38.81 Aligned_cols=69 Identities=19% Similarity=0.163 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEEC--CCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCC
Q 033896 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILG--PSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI 77 (109)
Q Consensus 8 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~g--p~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i 77 (109)
.+...|+..|+.--...+ ......+...+.+.+.. ...+.-....+++.+.||++||..+|.|.+.+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 456677777765333233 22233444455666621 2334445678999999999999999999988754
No 31
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.59 E-value=0.025 Score=34.28 Aligned_cols=27 Identities=33% Similarity=0.600 Sum_probs=23.4
Q ss_pred CCcEEEEEEecCCCCCCCCCeEEEecC
Q 033896 50 EGGVFKLELFLPEDYPMSAPKVRFLTK 76 (109)
Q Consensus 50 ~g~~~~~~i~f~~~YP~~pP~v~f~~~ 76 (109)
....+.+.+.||++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999999864
No 32
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.022 Score=42.11 Aligned_cols=70 Identities=23% Similarity=0.514 Sum_probs=49.1
Q ss_pred CCceeEEEEECCCCCCCCCcEEE--EEEecCCCCCCCCCeEEEecC----C-ccccccCCCceeccCCCCCCc-cccchh
Q 033896 33 NMRYFNVMILGPSQSPYEGGVFK--LELFLPEDYPMSAPKVRFLTK----I-YHPNIDKLGRICLDILKDKWS-PALQIR 104 (109)
Q Consensus 33 ~~~~w~~~i~gp~~tpy~g~~~~--~~i~f~~~YP~~pP~v~f~~~----i-~Hpnv~~~G~icl~~l~~~W~-p~~~i~ 104 (109)
+++...++|. .+|.|..|. +.|-+.+.||..||.+..... | .|-+|+.+|.|-|..|. +|. |+.++.
T Consensus 51 ~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh-~W~~pssdLv 125 (365)
T KOG2391|consen 51 LLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH-NWDPPSSDLV 125 (365)
T ss_pred chhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc-cCCCccchHH
Confidence 3455444443 477887766 455579999999999877532 1 48899999999999984 564 555555
Q ss_pred hhh
Q 033896 105 TVL 107 (109)
Q Consensus 105 ~il 107 (109)
.++
T Consensus 126 ~Li 128 (365)
T KOG2391|consen 126 GLI 128 (365)
T ss_pred HHH
Confidence 543
No 33
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=94.56 E-value=0.27 Score=32.86 Aligned_cols=53 Identities=28% Similarity=0.496 Sum_probs=40.5
Q ss_pred EEEEecCCCCCCCCCeEEEecCCc---cccccCC-----CceeccCC-CCCCccccchhhhh
Q 033896 55 KLELFLPEDYPMSAPKVRFLTKIY---HPNIDKL-----GRICLDIL-KDKWSPALQIRTVL 107 (109)
Q Consensus 55 ~~~i~f~~~YP~~pP~v~f~~~i~---Hpnv~~~-----G~icl~~l-~~~W~p~~~i~~il 107 (109)
.+.|.|+.+||..+|.|.+..+.| +||++.. ..+|+.-- ...|.+..+++.+|
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l 117 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFL 117 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHH
Confidence 367899999999999888776643 5777765 67998644 36789998887765
No 34
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=94.39 E-value=0.22 Score=31.83 Aligned_cols=53 Identities=15% Similarity=0.349 Sum_probs=40.2
Q ss_pred CCeEEEeCCCCCceeEEEEEC--CCCCCCCCcEEEEEEecCCCCCCCCCeEEEecC
Q 033896 23 PGISASPAEDNMRYFNVMILG--PSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (109)
Q Consensus 23 ~~~~~~~~~~~~~~w~~~i~g--p~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~ 76 (109)
.|+..+...+.-..|.+ |.| -+.+.|....-.+-|.+|+.||..+|...+..+
T Consensus 12 ~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P 66 (122)
T PF14462_consen 12 RGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYP 66 (122)
T ss_pred cCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECC
Confidence 36666665555556655 555 566779999999999999999999888777755
No 35
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.51 E-value=0.82 Score=37.61 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCC-cEEEEEEecCCCCCCC-CCeEEEecC
Q 033896 8 RRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEG-GVFKLELFLPEDYPMS-APKVRFLTK 76 (109)
Q Consensus 8 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g-~~~~~~i~f~~~YP~~-pP~v~f~~~ 76 (109)
.-|.+|+.-|- .+...+.++-.+-.-..-.+.+.+|-..- .| -..++.|.||.+||.+ +|.+.|..+
T Consensus 423 QnLgeE~S~Ig-~k~~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 423 QNLGEEFSLIG-VKIRNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhHHhHHhHhh-ccccccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 44566666552 22334444422223334455666544333 33 3458899999999996 999999865
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=89.12 E-value=2 Score=30.01 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.4
Q ss_pred EEEEEEecCCCCCCCCCeEEEe
Q 033896 53 VFKLELFLPEDYPMSAPKVRFL 74 (109)
Q Consensus 53 ~~~~~i~f~~~YP~~pP~v~f~ 74 (109)
.+.+.+.++++||.++|.+.+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred cEEEEEEccCCCCCCCcceecc
Confidence 7889999999999999999444
No 37
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=83.62 E-value=4 Score=29.82 Aligned_cols=60 Identities=20% Similarity=0.364 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEe
Q 033896 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFL 74 (109)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~ 74 (109)
..++|.+|+.++..+.. +.+. .++++....+.+... .....++|.++.+||.++|.+...
T Consensus 100 ~ys~ll~EIe~IGW~kl--~~i~-~d~~ls~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~~~ 159 (291)
T PF09765_consen 100 YYSNLLKEIEAIGWDKL--VQIQ-FDDDLSTIKLKIFDS------SRQHYLELKLPSNYPFEPPSCSLD 159 (291)
T ss_dssp GC-CHHHHHHHHHCGCC--EEEE-E-CCCSEEEEEEETT------CEEEEEEEETTTTTTTSEEEECS-
T ss_pred HHHHHHHHHHHhccccc--eEEe-cCCCccEEEEEEEcC------CceEEEEEEECCCCCCCCceeeCC
Confidence 34578888888866544 2222 366777777777732 157789999999999999975443
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=73.44 E-value=6.3 Score=29.40 Aligned_cols=27 Identities=26% Similarity=0.635 Sum_probs=23.1
Q ss_pred cEEEEEEecCCCCCCCCCeEEEecCCcc
Q 033896 52 GVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (109)
Q Consensus 52 ~~~~~~i~f~~~YP~~pP~v~f~~~i~H 79 (109)
-.|-+++.+|..||...|.++|++ ++|
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS-~yH 332 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQS-VYH 332 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEe-ecc
Confidence 468889999999999999999997 445
No 39
>smart00340 HALZ homeobox associated leucin zipper.
Probab=70.52 E-value=4.1 Score=21.07 Aligned_cols=14 Identities=43% Similarity=0.472 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHhcC
Q 033896 7 PRRIVKETQRLLSE 20 (109)
Q Consensus 7 ~~Rl~~E~~~l~~~ 20 (109)
-+||++|+.++..-
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 47999999998764
No 40
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=66.87 E-value=12 Score=24.36 Aligned_cols=25 Identities=24% Similarity=0.632 Sum_probs=22.6
Q ss_pred CCcEEEEEEecCCCCC-CCCCeEEEe
Q 033896 50 EGGVFKLELFLPEDYP-MSAPKVRFL 74 (109)
Q Consensus 50 ~g~~~~~~i~f~~~YP-~~pP~v~f~ 74 (109)
+.|.|.|.-.+|-.|| ..||.|.|.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 3489999999999999 999999987
No 41
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=66.31 E-value=3 Score=28.03 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=14.2
Q ss_pred cCCcc---ccccCCCceeccCC
Q 033896 75 TKIYH---PNIDKLGRICLDIL 93 (109)
Q Consensus 75 ~~i~H---pnv~~~G~icl~~l 93 (109)
|+.|| +||+.+|.||+-..
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~ 111 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNN 111 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCC
Confidence 44555 49999999998653
No 42
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=63.23 E-value=14 Score=25.19 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCCCCCCCeEEEe
Q 033896 51 GGVFKLELFLPEDYPMSAPKVRFL 74 (109)
Q Consensus 51 g~~~~~~i~f~~~YP~~pP~v~f~ 74 (109)
.|.|.|+=.+|--||..+|-|.|.
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEE
Confidence 488999999999999999999997
No 43
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.25 E-value=13 Score=20.39 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=20.4
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCe
Q 033896 1 MASGNLPRRIVKETQRLLSEPAPGI 25 (109)
Q Consensus 1 m~s~~~~~Rl~~E~~~l~~~~~~~~ 25 (109)
|+|+.++.-+.+|+++.+++.+.+.
T Consensus 28 mSsGEAIa~VA~elRe~hk~~~~~~ 52 (60)
T COG3140 28 MSSGEAIALVAQELRENHKGENRIV 52 (60)
T ss_pred ccchhHHHHHHHHHHHHhccccccc
Confidence 7888999999999999887765444
No 44
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=59.58 E-value=4.9 Score=28.39 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=13.5
Q ss_pred CCccc---cccCCCceeccCC
Q 033896 76 KIYHP---NIDKLGRICLDIL 93 (109)
Q Consensus 76 ~i~Hp---nv~~~G~icl~~l 93 (109)
+.||. ||+.+|+||+-..
T Consensus 132 ~L~~aPffNV~~~G~VC~G~~ 152 (228)
T TIGR03737 132 KLYQAPLFNVWSNGEICAGNA 152 (228)
T ss_pred eeccCCcCccCCCCeEeeCCC
Confidence 35554 9999999998544
No 45
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=59.46 E-value=17 Score=27.24 Aligned_cols=42 Identities=26% Similarity=0.577 Sum_probs=33.5
Q ss_pred CceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEec-CCcccc
Q 033896 34 MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLT-KIYHPN 81 (109)
Q Consensus 34 ~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~-~i~Hpn 81 (109)
...+.+.| ||.|...+-+|.|...||..||-+.|-. .-|+|.
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 34555555 7899999999999999999999999963 347774
No 46
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=57.05 E-value=22 Score=23.56 Aligned_cols=25 Identities=24% Similarity=0.607 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCCCC-----CCCCeEEEec
Q 033896 51 GGVFKLELFLPEDYP-----MSAPKVRFLT 75 (109)
Q Consensus 51 g~~~~~~i~f~~~YP-----~~pP~v~f~~ 75 (109)
.|.|.|+-.+|--|| ..||-|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 488999999999999 7999999873
No 47
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=46.92 E-value=59 Score=19.13 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=28.4
Q ss_pred ceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCc
Q 033896 35 RYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIY 78 (109)
Q Consensus 35 ~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~ 78 (109)
.+|.+-+.|+.+.--..-+=++...+.+.|+. |...+..+-|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 47999999888764455677788888999885 6766666533
No 48
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=46.27 E-value=8.8 Score=18.58 Aligned_cols=15 Identities=33% Similarity=0.769 Sum_probs=9.4
Q ss_pred CccccccCCCc-eecc
Q 033896 77 IYHPNIDKLGR-ICLD 91 (109)
Q Consensus 77 i~Hpnv~~~G~-icl~ 91 (109)
.|||.++.+|+ .|-.
T Consensus 2 ~yHPg~~~~g~W~CC~ 17 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCK 17 (32)
T ss_dssp EE-SS-EETTCESSSS
T ss_pred CcCCCcccCCcCcCCC
Confidence 38999998877 5654
No 49
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=43.00 E-value=45 Score=22.90 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=21.0
Q ss_pred CcEEEEEEecCCCCCC-----CCCeEEEe
Q 033896 51 GGVFKLELFLPEDYPM-----SAPKVRFL 74 (109)
Q Consensus 51 g~~~~~~i~f~~~YP~-----~pP~v~f~ 74 (109)
.|.|.|+-..|-.||. .||-|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4889999999999998 88888876
No 50
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=42.96 E-value=75 Score=21.29 Aligned_cols=65 Identities=14% Similarity=0.277 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCC----CCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecC
Q 033896 8 RRIVKETQRLLSEP----APGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (109)
Q Consensus 8 ~Rl~~E~~~l~~~~----~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~ 76 (109)
+.+-+|.+.+.... -.|+.+. +.+.=...+.+..|+-.|- --...+++.| .||-..||.|.|..+
T Consensus 8 akFdR~V~~~~~~~~a~r~rgwfLi--qa~fP~~~~iF~~~kvaP~-~~~~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 8 AKFDRQVGRFRPRADAYRMRGWFLI--QASFPTADVIFAAPKVAPR-SIGLRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred HHHHHHHhhhhhhhhHhhhcCeEEE--EccCceEEEEeeCCccCcc-ccceEEEEec-cccCcCCCceEEecc
Confidence 34667777765432 2455543 3333333444444555552 1224556666 689999999999977
No 51
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=42.53 E-value=52 Score=22.59 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=30.9
Q ss_pred ChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCC
Q 033896 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQ 46 (109)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~ 46 (109)
...+|+++|++.+.++-...++.-|.-+..-.+.+.+..-++
T Consensus 119 k~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD 160 (203)
T KOG3285|consen 119 KDLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKD 160 (203)
T ss_pred hHHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCC
Confidence 346899999999999887778777765555666666654443
No 52
>KOG3470 consensus Beta-tubulin folding cofactor A [Posttranslational modification, protein turnover, chaperones]
Probab=41.54 E-value=17 Score=22.54 Aligned_cols=21 Identities=29% Similarity=0.178 Sum_probs=17.2
Q ss_pred CCCCChhHHHHHHHHHHhcCC
Q 033896 1 MASGNLPRRIVKETQRLLSEP 21 (109)
Q Consensus 1 m~s~~~~~Rl~~E~~~l~~~~ 21 (109)
|+-+++.+||++.+.+|++-.
T Consensus 61 ~mlPD~~~RL~~a~~DLe~~l 81 (107)
T KOG3470|consen 61 MMLPDSQRRLRKAYEDLESIL 81 (107)
T ss_pred HHChHHHHHHHHHHHHHHHHH
Confidence 667889999999999987643
No 53
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=41.33 E-value=16 Score=22.85 Aligned_cols=21 Identities=33% Similarity=0.648 Sum_probs=16.0
Q ss_pred CCCceeccCCCCCCccccchh
Q 033896 84 KLGRICLDILKDKWSPALQIR 104 (109)
Q Consensus 84 ~~G~icl~~l~~~W~p~~~i~ 104 (109)
..|..|.-.+.++|+|.+++.
T Consensus 49 GGg~~CC~~~p~~W~pg~tv~ 69 (118)
T PF11745_consen 49 GGGFTCCVSLPRKWRPGLTVK 69 (118)
T ss_pred CCceEEEEEcCCCCCCCCEEE
Confidence 345678777889999998864
No 54
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=40.97 E-value=33 Score=22.20 Aligned_cols=30 Identities=17% Similarity=0.411 Sum_probs=20.5
Q ss_pred CCCCCceeEEEEECCCCCCCC-CcEEEEEEe
Q 033896 30 AEDNMRYFNVMILGPSQSPYE-GGVFKLELF 59 (109)
Q Consensus 30 ~~~~~~~w~~~i~gp~~tpy~-g~~~~~~i~ 59 (109)
...|...|.|++.|++|++.. ..+|-+.+.
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~~n~tf~~~Fi 73 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRKSNNTFMYKFI 73 (139)
T ss_pred cCCCCcceEEEEECCCCcceeccccchheee
Confidence 456777889999999998774 344444433
No 55
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=40.08 E-value=54 Score=22.33 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=20.2
Q ss_pred CcEEEEEEecCCCCCC-----CCCeEEEe
Q 033896 51 GGVFKLELFLPEDYPM-----SAPKVRFL 74 (109)
Q Consensus 51 g~~~~~~i~f~~~YP~-----~pP~v~f~ 74 (109)
.|.|.|+-.+|--||. .||-|+|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3889999999999995 78888776
No 56
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=39.40 E-value=98 Score=22.36 Aligned_cols=48 Identities=23% Similarity=0.364 Sum_probs=32.5
Q ss_pred CCCceeEEEEECCCCCCCCCc----EEEEEEec-----CCCCCCCCCeEEEecCCccc
Q 033896 32 DNMRYFNVMILGPSQSPYEGG----VFKLELFL-----PEDYPMSAPKVRFLTKIYHP 80 (109)
Q Consensus 32 ~~~~~w~~~i~gp~~tpy~g~----~~~~~i~f-----~~~YP~~pP~v~f~~~i~Hp 80 (109)
.|..-|.+..+ ..+|.-..| .|+.++.+ .-|-||++|+|+.+++-|..
T Consensus 100 KDp~PWkl~Yr-V~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft~ 156 (276)
T PF00845_consen 100 KDPIPWKLYYR-VEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFTE 156 (276)
T ss_pred CCCCCeEEEEE-eecCccccceeeeeeeceeeecccccccccccCCCceEeeecccCc
Confidence 45556888887 444544333 35555555 47889999999999986543
No 57
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=39.15 E-value=22 Score=19.72 Aligned_cols=11 Identities=36% Similarity=0.416 Sum_probs=8.7
Q ss_pred HHHHHHHHHHh
Q 033896 8 RRIVKETQRLL 18 (109)
Q Consensus 8 ~Rl~~E~~~l~ 18 (109)
+||++||+++-
T Consensus 37 ~rL~kEL~d~D 47 (59)
T PF12065_consen 37 QRLRKELQDMD 47 (59)
T ss_pred HHHHHHHHHcc
Confidence 58889998873
No 58
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=38.03 E-value=14 Score=18.35 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=11.4
Q ss_pred CccccccCCCc-eecc
Q 033896 77 IYHPNIDKLGR-ICLD 91 (109)
Q Consensus 77 i~Hpnv~~~G~-icl~ 91 (109)
-|||.+..+|. .|..
T Consensus 7 ~yHP~~~~~G~W~CC~ 22 (36)
T smart00107 7 KYHPSFWVDGKWLCCQ 22 (36)
T ss_pred ccCCCceeCCeEccCC
Confidence 38999998887 5643
No 59
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=37.69 E-value=73 Score=23.82 Aligned_cols=40 Identities=28% Similarity=0.535 Sum_probs=28.4
Q ss_pred ceeEEEEECCCCC-CCCCcEEEEEEe---cCCCCCCCCCeEEEec
Q 033896 35 RYFNVMILGPSQS-PYEGGVFKLELF---LPEDYPMSAPKVRFLT 75 (109)
Q Consensus 35 ~~w~~~i~gp~~t-py~g~~~~~~i~---f~~~YP~~pP~v~f~~ 75 (109)
..|+..|.|-.++ -|++|.+++++. |-.-|- ..|++||=.
T Consensus 197 dh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~q-R~PriRfG~ 240 (345)
T COG3866 197 DHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQ-RGPRIRFGM 240 (345)
T ss_pred cCCeeeeeccCCcccccCCceeEEEeccccccccc-cCCceEeeE
Confidence 3688899995444 788999998886 444444 456999853
No 60
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=37.51 E-value=46 Score=24.82 Aligned_cols=25 Identities=28% Similarity=0.503 Sum_probs=22.0
Q ss_pred cEEEEEEecCCCCCCCCCeEEEecC
Q 033896 52 GVFKLELFLPEDYPMSAPKVRFLTK 76 (109)
Q Consensus 52 ~~~~~~i~f~~~YP~~pP~v~f~~~ 76 (109)
-.+.+.+..++.||.+.|.|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4577888999999999999999876
No 61
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=35.53 E-value=1.5e+02 Score=20.64 Aligned_cols=71 Identities=15% Similarity=0.152 Sum_probs=38.7
Q ss_pred CChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCC-------------------
Q 033896 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDY------------------- 64 (109)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~Y------------------- 64 (109)
++...|+.+.++++++.. .+...-|.+.+....+.-| || |.+.+.|.++=
T Consensus 8 ~s~~eR~~e~~~~~k~~L---------~~a~~GW~~~yyp~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y 76 (235)
T PF14135_consen 8 KSPAERINEALAEYKKIL---------TSAPNGWKLEYYPKTDQSY-GG-YTFLMKFDDDGKVTMASDFDSASTPSTSSY 76 (235)
T ss_pred CCHHHHHHHHHHHHHHHH---------hcCCCceEEEEECCCCccC-Cc-EEEEEEECCCCeEEEEEccCCCCceeeEEE
Confidence 456788888777776532 2223346666662222223 33 66666665443
Q ss_pred C---CCCCeEEEecC--CccccccCC
Q 033896 65 P---MSAPKVRFLTK--IYHPNIDKL 85 (109)
Q Consensus 65 P---~~pP~v~f~~~--i~Hpnv~~~ 85 (109)
- ..-|.+.|.|- ++|-..+++
T Consensus 77 ~~~~~~gp~LsFdTyN~~iH~~s~p~ 102 (235)
T PF14135_consen 77 RLKQDQGPVLSFDTYNEYIHYFSDPS 102 (235)
T ss_pred EEecCCceEEEEEeCCceEEEccCCC
Confidence 1 22477777763 567655553
No 62
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=33.63 E-value=1.1e+02 Score=18.36 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=20.9
Q ss_pred CCCcEEEEEEecCCCCCCCCCeEEEecC
Q 033896 49 YEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (109)
Q Consensus 49 y~g~~~~~~i~f~~~YP~~pP~v~f~~~ 76 (109)
-+|..+.|...-|..|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 45777888888899999 689999865
No 63
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=33.29 E-value=1.4e+02 Score=20.51 Aligned_cols=57 Identities=14% Similarity=0.311 Sum_probs=34.7
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCC
Q 033896 1 MASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPED 63 (109)
Q Consensus 1 m~s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~ 63 (109)
|.-.+......+|+.++.++. .|..+....++.. +.-.+..++.|..|+++-.++..
T Consensus 1 ~~~~~~~~~~~~~~l~~~~~~-~gWk~~k~~~~~~-----v~~k~~~~~~gkl~k~egvi~~~ 57 (204)
T cd08904 1 MDFKKIAQETSQEVLGYSRDT-SGWKVVKTSKKIT-----VSWKPSRKYHGNLYRVEGIIPES 57 (204)
T ss_pred CCHHHHHHHHHHHHHhhhhcc-cCCeEEecCCceE-----EEEEEcCCCCceEEEEEEEecCC
Confidence 333445566677777776644 6777775554443 22223446778888888887754
No 64
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=32.13 E-value=22 Score=19.62 Aligned_cols=14 Identities=14% Similarity=0.525 Sum_probs=7.9
Q ss_pred CCCccccchhhhhc
Q 033896 95 DKWSPALQIRTVLL 108 (109)
Q Consensus 95 ~~W~p~~~i~~il~ 108 (109)
-+|.|.+++++++-
T Consensus 36 LgW~p~~~L~~~i~ 49 (62)
T PF13950_consen 36 LGWKPKYSLEDMIR 49 (62)
T ss_dssp C----SSSHHHHHH
T ss_pred hCCCcCCCHHHHHH
Confidence 37999999998863
No 65
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=32.10 E-value=92 Score=22.58 Aligned_cols=31 Identities=23% Similarity=0.523 Sum_probs=26.7
Q ss_pred CCCCCCcEEEEEEecCCCCCCCC--CeEEEecC
Q 033896 46 QSPYEGGVFKLELFLPEDYPMSA--PKVRFLTK 76 (109)
Q Consensus 46 ~tpy~g~~~~~~i~f~~~YP~~p--P~v~f~~~ 76 (109)
.+.+.|-.|++.+..|.+||-.- |.|.|+..
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lDG 47 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLDG 47 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEecc
Confidence 34678899999999999999887 99999864
No 66
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=32.05 E-value=34 Score=22.88 Aligned_cols=66 Identities=11% Similarity=0.216 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEE--EEEecCCCCCCCCCeEEEecC---CccccccC
Q 033896 10 IVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFK--LELFLPEDYPMSAPKVRFLTK---IYHPNIDK 84 (109)
Q Consensus 10 l~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~--~~i~f~~~YP~~pP~v~f~~~---i~Hpnv~~ 84 (109)
+..++++....-..|+++....++ +.+ .|-+-. ..+. .+||.|-+.=. .-|+-+..
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~~------------~~~-~G~Tvss~~SvS------ldPPlvlv~l~~~s~~~~~i~~ 66 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAGD------------AGR-CGITATAVCSVT------DTPPSVMVCINANSAMNPVFQG 66 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEecC------------CCc-EEEEEEEEEEeE------cCCCEEEEEECCCCchhHHHHh
Confidence 456788888888999987643211 111 121111 1222 36999988633 46888888
Q ss_pred CCceeccCCC
Q 033896 85 LGRICLDILK 94 (109)
Q Consensus 85 ~G~icl~~l~ 94 (109)
+|.+|+++|.
T Consensus 67 sg~F~VnvL~ 76 (170)
T PRK15486 67 NGKLCINVLN 76 (170)
T ss_pred CCeEEEEECh
Confidence 9999999995
No 67
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=31.36 E-value=1.6e+02 Score=22.72 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEE---------EEEecCCCCCCCCCeEEEecCCcc
Q 033896 9 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFK---------LELFLPEDYPMSAPKVRFLTKIYH 79 (109)
Q Consensus 9 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~---------~~i~f~~~YP~~pP~v~f~~~i~H 79 (109)
.+..|.++|+...|..-.+..... -...+.|. | ..-+-++.++ +. .|...|++.||-+.....+.|
T Consensus 249 ~ne~Ev~Rir~eHPdd~~~vv~~~--~RvkG~L~-v-sRAfGd~~lK~~~~n~e~l~~-~fr~~~~~t~PyltaeP~i~~ 323 (390)
T KOG0700|consen 249 SNEDEVRRIRSEHPDDPHIVVNKH--WRVKGILQ-V-SRAFGDGYLKWPEFNQEPLLE-KFRIPYIGTPPYLTAEPSITH 323 (390)
T ss_pred ccHHHHHHHHHhCCCCcceEeecc--ceeeEEEE-e-eeeccceeecchhhccchhHh-hcCCCCCCCCCceeccceEEE
Confidence 356788888777664443333332 12233443 1 1123222222 12 688999999999999999888
Q ss_pred ccccCCCc
Q 033896 80 PNIDKLGR 87 (109)
Q Consensus 80 pnv~~~G~ 87 (109)
..+.++-+
T Consensus 324 HrL~p~Dk 331 (390)
T KOG0700|consen 324 HKLTPNDK 331 (390)
T ss_pred EEcCCCCe
Confidence 77776544
No 68
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=31.14 E-value=11 Score=30.03 Aligned_cols=47 Identities=30% Similarity=0.331 Sum_probs=34.1
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCC
Q 033896 1 MASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEG 51 (109)
Q Consensus 1 m~s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g 51 (109)
|-|+-..||+.+|++.++-... +...++.|+.+|-.-+- |+-+.|.-
T Consensus 510 M~SGl~RKRFlRELqtLKv~Ad---YSs~DeSNLdn~L~gLs-Pels~YTY 556 (832)
T KOG3678|consen 510 MISGLHRKRFLRELQTLKVAAD---YSSVDESNLDNFLMGLS-PELSVYTY 556 (832)
T ss_pred hhhhhhHHHHHHHHHHHHHhhc---ccccchhhHHHHHhcCC-hhHHHHhH
Confidence 6677788999999999975432 34457889999876665 66666643
No 69
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=30.96 E-value=45 Score=21.20 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=16.1
Q ss_pred CChhHHHHHHHHHHhcCCCCC
Q 033896 4 GNLPRRIVKETQRLLSEPAPG 24 (109)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~ 24 (109)
+....||++|+....-++..|
T Consensus 26 ~krr~rLl~Ef~rR~GDpn~G 46 (118)
T PF09929_consen 26 KKRRSRLLREFQRRSGDPNVG 46 (118)
T ss_pred HHHHHHHHHHHHHhcCCCCCC
Confidence 345668999999988887654
No 70
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion. They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.
Probab=30.39 E-value=1.1e+02 Score=18.22 Aligned_cols=47 Identities=15% Similarity=0.048 Sum_probs=21.7
Q ss_pred EEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccccCCCceec
Q 033896 40 MILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGRICL 90 (109)
Q Consensus 40 ~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~~~G~icl 90 (109)
++.-|.. .+.|..-+++.|.+- .....+.|.+.--+..|.++|.|..
T Consensus 12 ~~~Vp~~--l~~g~~lg~V~f~dC--~~~~~~~~~ssDpdF~V~~DGsVy~ 58 (90)
T PF08758_consen 12 TFEVPSN--LEAGQPLGKVNFEDC--TGRRRVIFESSDPDFRVLEDGSVYA 58 (90)
T ss_dssp EE----S--S-SS--EEE---B----SS---EEEE---SEEEEETTTEEEE
T ss_pred EEEcCch--hhCCcEEEEEEeccC--CCCCceEEecCCCCEEEcCCCeEEE
Confidence 3443554 677888899999777 4567788877655778889999875
No 71
>PRK05114 hypothetical protein; Provisional
Probab=30.19 E-value=49 Score=18.29 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=16.7
Q ss_pred CCCCChhHHHHHHHHHHhcCC
Q 033896 1 MASGNLPRRIVKETQRLLSEP 21 (109)
Q Consensus 1 m~s~~~~~Rl~~E~~~l~~~~ 21 (109)
|+|+.+++-+.+|+++-.+..
T Consensus 28 mSsgEAI~~VA~eiRe~~~~~ 48 (59)
T PRK05114 28 MSSGEAIALVAEELRANHQGE 48 (59)
T ss_pred ccHHHHHHHHHHHHHHHHhcc
Confidence 678889999999999866543
No 72
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.64 E-value=57 Score=25.26 Aligned_cols=22 Identities=36% Similarity=0.751 Sum_probs=15.6
Q ss_pred EEEEEecCCCCCCC-CCeEEEec
Q 033896 54 FKLELFLPEDYPMS-APKVRFLT 75 (109)
Q Consensus 54 ~~~~i~f~~~YP~~-pP~v~f~~ 75 (109)
..+...+|++||.. ||.+...+
T Consensus 76 ivlkf~LP~~YPs~spP~f~l~s 98 (445)
T KOG1814|consen 76 IVLKFHLPNDYPSVSPPKFELKS 98 (445)
T ss_pred eeeeeecCCccccCCCCceeeeh
Confidence 34667789999985 77665544
No 73
>PF06468 Spond_N: Spondin_N; InterPro: IPR009465 This conserved region is found in the N-terminal half of several Spondin proteins []. Spondins are involved in patterning axonal growth trajectory through either inhibiting or promoting adhesion of embryonic nerve cells [].; PDB: 3D34_A 3Q13_A.
Probab=29.35 E-value=47 Score=22.82 Aligned_cols=25 Identities=28% Similarity=0.622 Sum_probs=15.6
Q ss_pred EEEEEEe-------cCCCCCCCCCeEEEecCC
Q 033896 53 VFKLELF-------LPEDYPMSAPKVRFLTKI 77 (109)
Q Consensus 53 ~~~~~i~-------f~~~YP~~pP~v~f~~~i 77 (109)
.|++++. +|++||...|..+|..-+
T Consensus 3 ~Y~~~f~g~Ws~~~hpk~yP~~~~~~~fSpli 34 (196)
T PF06468_consen 3 TYEVTFEGIWSRNTHPKDYPSNRPPAHFSPLI 34 (196)
T ss_dssp EEEEEEEEE-STTTS-TT--CTSSCSEEEEEE
T ss_pred eEEEEEEEEECCccCcccccccccccccchhh
Confidence 4566665 899999987777777554
No 74
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=28.87 E-value=86 Score=20.04 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=16.6
Q ss_pred ChhHHHHHHHHHHhcCCCCCeEE
Q 033896 5 NLPRRIVKETQRLLSEPAPGISA 27 (109)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~~~~ 27 (109)
..+||+.+|.-.+.+...+|+.+
T Consensus 64 NRiKR~lRE~fR~~~~~l~g~Di 86 (130)
T PRK00396 64 NRLKRLIRESFRLNQHSLAGWDI 86 (130)
T ss_pred HHHHHHHHHHHHHhhccCCCeeE
Confidence 45788999988887765566654
No 75
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=28.52 E-value=65 Score=26.03 Aligned_cols=29 Identities=38% Similarity=0.817 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEEecCCCCCC---CCCeEEEecC
Q 033896 47 SPYEGGVFKLELFLPEDYPM---SAPKVRFLTK 76 (109)
Q Consensus 47 tpy~g~~~~~~i~f~~~YP~---~pP~v~f~~~ 76 (109)
+||.=|.|.+ +.+|++||+ +-|-+.|.|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 5777788885 668999998 5899999987
No 76
>PF15572 Imm26: Immunity protein 26
Probab=28.30 E-value=72 Score=19.51 Aligned_cols=26 Identities=27% Similarity=0.618 Sum_probs=16.3
Q ss_pred CCCCCCCCcEEEEEEecCCCCCCCCCeEEEe
Q 033896 44 PSQSPYEGGVFKLELFLPEDYPMSAPKVRFL 74 (109)
Q Consensus 44 p~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~ 74 (109)
+++..+.|.+|++ |..||.+ +.|.|.
T Consensus 7 ~~~~l~rG~i~R~----~~~ypye-~~VDFm 32 (96)
T PF15572_consen 7 KEKYLWRGTIFRC----PGVYPYE-EVVDFM 32 (96)
T ss_pred CCccEecceEEEe----cccCCCc-ccEEEE
Confidence 3445666776665 4448887 666665
No 77
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=28.02 E-value=89 Score=19.06 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=21.9
Q ss_pred eeEEEEECCCCCCCCCcEEEEEEecCC
Q 033896 36 YFNVMILGPSQSPYEGGVFKLELFLPE 62 (109)
Q Consensus 36 ~w~~~i~gp~~tpy~g~~~~~~i~f~~ 62 (109)
-.|+.+.|++..+=+|..+.+++.|-+
T Consensus 77 g~HlmL~g~~~~l~~G~~v~ltL~f~~ 103 (110)
T PF04314_consen 77 GYHLMLMGLKRPLKPGDTVPLTLTFED 103 (110)
T ss_dssp CCEEEEECESS-B-TTEEEEEEEEETT
T ss_pred CEEEEEeCCcccCCCCCEEEEEEEECC
Confidence 468999999888899999999999864
No 78
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=27.61 E-value=58 Score=25.66 Aligned_cols=26 Identities=42% Similarity=0.873 Sum_probs=19.6
Q ss_pred CCCcEEEEEEecC-----CCCCCCCCeEEEecCCcccccc
Q 033896 49 YEGGVFKLELFLP-----EDYPMSAPKVRFLTKIYHPNID 83 (109)
Q Consensus 49 y~g~~~~~~i~f~-----~~YP~~pP~v~f~~~i~Hpnv~ 83 (109)
..||.|.+.+.+. ++||. .||||+-+
T Consensus 356 ~~~~~yElDLVLRnN~Tsee~P~---------GIFHPH~e 386 (489)
T TIGR01239 356 RRDGKYELDLVLRDNQTSEEYPD---------GIFHPHQD 386 (489)
T ss_pred ecCCceEEEEEeecCCCccccCC---------ccccCcHh
Confidence 4688999999985 45665 58999744
No 79
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=26.89 E-value=1.2e+02 Score=21.39 Aligned_cols=24 Identities=21% Similarity=0.610 Sum_probs=20.7
Q ss_pred CcEEEEEEecCCCCCC-------CCCeEEEe
Q 033896 51 GGVFKLELFLPEDYPM-------SAPKVRFL 74 (109)
Q Consensus 51 g~~~~~~i~f~~~YP~-------~pP~v~f~ 74 (109)
.|.|.|+-..|--||. .||-|.|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4889999999999975 79999885
No 80
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=26.87 E-value=18 Score=24.93 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=19.3
Q ss_pred CCceeccCCCCCCccccchhhhh
Q 033896 85 LGRICLDILKDKWSPALQIRTVL 107 (109)
Q Consensus 85 ~G~icl~~l~~~W~p~~~i~~il 107 (109)
.+..|.+++.+-|+|.+|++..+
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~ 157 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEAL 157 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHH
Confidence 45699999999999999987653
No 81
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=26.58 E-value=1.1e+02 Score=22.34 Aligned_cols=24 Identities=21% Similarity=0.520 Sum_probs=20.6
Q ss_pred CcEEEEEEecCCCCC------------------CCCCeEEEe
Q 033896 51 GGVFKLELFLPEDYP------------------MSAPKVRFL 74 (109)
Q Consensus 51 g~~~~~~i~f~~~YP------------------~~pP~v~f~ 74 (109)
.|.|.|+-..|.-|| ..||-|.|.
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 488999999999997 578888886
No 82
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=26.25 E-value=48 Score=25.05 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHhcCCCCCeEEEeCC
Q 033896 6 LPRRIVKETQRLLSEPAPGISASPAE 31 (109)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~ 31 (109)
..++|++|++++..+.+.+..+.+..
T Consensus 33 sP~~L~~em~~V~~~L~~~~~lp~~~ 58 (361)
T PF12259_consen 33 SPKQLLDEMKNVSSHLPRDWSLPLEK 58 (361)
T ss_pred CHHHHHHHHHHHHhcCCcccccCccc
Confidence 45799999999987766665544433
No 83
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=25.87 E-value=1.2e+02 Score=21.25 Aligned_cols=24 Identities=21% Similarity=0.605 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCCCCC-------CCCeEEEe
Q 033896 51 GGVFKLELFLPEDYPM-------SAPKVRFL 74 (109)
Q Consensus 51 g~~~~~~i~f~~~YP~-------~pP~v~f~ 74 (109)
.|.|+|+-.+|--||. .||-|.|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4889999999999976 79999885
No 84
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=25.70 E-value=1.1e+02 Score=16.70 Aligned_cols=22 Identities=9% Similarity=0.259 Sum_probs=12.6
Q ss_pred EEEEEEecCCCCCCCCCeEEEec
Q 033896 53 VFKLELFLPEDYPMSAPKVRFLT 75 (109)
Q Consensus 53 ~~~~~i~f~~~YP~~pP~v~f~~ 75 (109)
.+..+|.|+..|.. +|+|.+--
T Consensus 2 ~~~~~I~F~~~F~~-~P~V~~~i 23 (72)
T PF09458_consen 2 EYSQTITFSKPFSS-PPQVIVSI 23 (72)
T ss_dssp EEEEEEE-SS--SS---EEEEEE
T ss_pred ceEEEeEcChhcCC-CCEEEEEE
Confidence 35678999999986 88887753
No 85
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=25.53 E-value=36 Score=22.23 Aligned_cols=17 Identities=47% Similarity=0.925 Sum_probs=12.7
Q ss_pred EEEEEecCCCCCCCCCe
Q 033896 54 FKLELFLPEDYPMSAPK 70 (109)
Q Consensus 54 ~~~~i~f~~~YP~~pP~ 70 (109)
|+-.=.+|.|||+.+|.
T Consensus 104 YR~KW~LP~dYPMvAPn 120 (148)
T COG4957 104 YRAKWGLPPDYPMVAPN 120 (148)
T ss_pred HHHhcCCCCCCCccchH
Confidence 44555699999998764
No 86
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=25.52 E-value=1.2e+02 Score=22.06 Aligned_cols=24 Identities=25% Similarity=0.713 Sum_probs=20.8
Q ss_pred CcEEEEEEecCCCCC------------------CCCCeEEEe
Q 033896 51 GGVFKLELFLPEDYP------------------MSAPKVRFL 74 (109)
Q Consensus 51 g~~~~~~i~f~~~YP------------------~~pP~v~f~ 74 (109)
.|.|.|.-..|.-|| ..||-|.|.
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 488999999999999 478888886
No 87
>TIGR02296 HpaC 4-hydroxyphenylacetate 3-monooxygenase, reductase component. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.
Probab=25.49 E-value=44 Score=21.77 Aligned_cols=29 Identities=21% Similarity=0.537 Sum_probs=23.1
Q ss_pred CCCCeEEEec---CCccccccCCCceeccCCC
Q 033896 66 MSAPKVRFLT---KIYHPNIDKLGRICLDILK 94 (109)
Q Consensus 66 ~~pP~v~f~~---~i~Hpnv~~~G~icl~~l~ 94 (109)
.+||.|-+.= ..-|+.+.++|.+|+++|.
T Consensus 36 ~~PP~v~v~l~~~s~t~~~i~~~g~F~VnvL~ 67 (154)
T TIGR02296 36 DTPPTVMVCINRNSAMNPIFQENGKLCINVLA 67 (154)
T ss_pred cCCCEEEEEECCCCchhHHHHhCCeEEEEECc
Confidence 4699998863 2468888889999999985
No 88
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=24.33 E-value=70 Score=19.05 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=11.8
Q ss_pred ChhHHHHHHHHHHhc
Q 033896 5 NLPRRIVKETQRLLS 19 (109)
Q Consensus 5 ~~~~Rl~~E~~~l~~ 19 (109)
.+.+||.+|.....+
T Consensus 7 ~~vkRL~KE~~~Y~k 21 (90)
T PF02970_consen 7 GVVKRLLKEEASYEK 21 (90)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467999999887654
No 89
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=24.03 E-value=1.4e+02 Score=21.85 Aligned_cols=24 Identities=17% Similarity=0.421 Sum_probs=20.2
Q ss_pred CcEEEEEEecCCCCC------------------CCCCeEEEe
Q 033896 51 GGVFKLELFLPEDYP------------------MSAPKVRFL 74 (109)
Q Consensus 51 g~~~~~~i~f~~~YP------------------~~pP~v~f~ 74 (109)
.|.|.|.-..|..|| ..||-|.|.
T Consensus 184 dG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 184 EGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 588999999998887 578888886
No 90
>PRK11700 hypothetical protein; Provisional
Probab=24.02 E-value=2.5e+02 Score=19.34 Aligned_cols=69 Identities=22% Similarity=0.442 Sum_probs=41.1
Q ss_pred CCceeEEEE---ECCCCCCC-CCcEEEEEEecC--------------CCCCCCCCeEEEe--cC------Ccccccc-CC
Q 033896 33 NMRYFNVMI---LGPSQSPY-EGGVFKLELFLP--------------EDYPMSAPKVRFL--TK------IYHPNID-KL 85 (109)
Q Consensus 33 ~~~~w~~~i---~gp~~tpy-~g~~~~~~i~f~--------------~~YP~~pP~v~f~--~~------i~Hpnv~-~~ 85 (109)
....|.+.. .=|.+.-| ..|+=|+++.+| ++.+..++-|++. +| .-+|-|. ++
T Consensus 87 ~~~~w~I~cvELP~P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~ 166 (187)
T PRK11700 87 QVGHWSIDCVELPYPGEKRYPHEGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTD 166 (187)
T ss_pred eeCCcEEEEEEeCCCCCCCCCCCCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEee
Confidence 445666544 33555555 567888999877 3344555555554 33 3556554 47
Q ss_pred CceeccCCCCCCccccchhhhh
Q 033896 86 GRICLDILKDKWSPALQIRTVL 107 (109)
Q Consensus 86 G~icl~~l~~~W~p~~~i~~il 107 (109)
|.+|+.+.. |+++.|+
T Consensus 167 ~~vcIK~HP------~slk~IV 182 (187)
T PRK11700 167 GGICIKFHP------HSIKEIV 182 (187)
T ss_pred CCEEEEEcC------ccHHHHH
Confidence 899988653 4555554
No 91
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=23.80 E-value=63 Score=24.12 Aligned_cols=25 Identities=20% Similarity=0.551 Sum_probs=20.1
Q ss_pred CCCCCCCCCeEEEecCCccccccCC
Q 033896 61 PEDYPMSAPKVRFLTKIYHPNIDKL 85 (109)
Q Consensus 61 ~~~YP~~pP~v~f~~~i~Hpnv~~~ 85 (109)
.+.-+..-|+|.|.-.++||||-..
T Consensus 302 ~dgs~eds~rvV~~V~lwhpevq~~ 326 (334)
T KOG3696|consen 302 HDGSSEDSPRVVFTVDLWHPEVQPA 326 (334)
T ss_pred cCCCcccCceEEEEEeccCcccccc
Confidence 3555556899999999999999764
No 92
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.21 E-value=68 Score=17.47 Aligned_cols=15 Identities=40% Similarity=0.446 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHhcC
Q 033896 6 LPRRIVKETQRLLSE 20 (109)
Q Consensus 6 ~~~Rl~~E~~~l~~~ 20 (109)
..||+++|+++++++
T Consensus 49 ~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 49 RIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456788888887664
No 93
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=23.08 E-value=80 Score=24.99 Aligned_cols=26 Identities=35% Similarity=0.752 Sum_probs=19.9
Q ss_pred CCCcEEEEEEecCCC-----CCCCCCeEEEecCCcccccc
Q 033896 49 YEGGVFKLELFLPED-----YPMSAPKVRFLTKIYHPNID 83 (109)
Q Consensus 49 y~g~~~~~~i~f~~~-----YP~~pP~v~f~~~i~Hpnv~ 83 (109)
.+||.|.+.+.+.++ ||. .||||+-+
T Consensus 359 ~~~~~yElDLVLRnN~Tsee~P~---------GIFHPH~e 389 (493)
T PRK05270 359 RRGGKYELDLVLRNNRTSEEHPD---------GIFHPHPE 389 (493)
T ss_pred ecCCeeEEEEEeecCCCccccCC---------ccccCchh
Confidence 578999999998754 554 58999644
No 94
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=23.01 E-value=1.2e+02 Score=18.91 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=14.6
Q ss_pred ChhHHHHHHHHHHhcCCCCCeE
Q 033896 5 NLPRRIVKETQRLLSEPAPGIS 26 (109)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~~~ 26 (109)
..+||+.+|.-.+.....+|+.
T Consensus 62 NRiKR~lRE~~R~~~~~l~~~D 83 (120)
T PRK04390 62 NYMKRVIREWFRLNQHRLPPVD 83 (120)
T ss_pred hHHHHHHHHHHHhccccCCCce
Confidence 4567888888877655444543
No 95
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=22.86 E-value=2.1e+02 Score=17.97 Aligned_cols=54 Identities=22% Similarity=0.380 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCC
Q 033896 9 RIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPED 63 (109)
Q Consensus 9 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~ 63 (109)
...+++.+.++...-|..+...-++ ....+.+.-+.+.|..+....+.+.-|.+
T Consensus 44 ~y~~~i~~~~~a~~lg~~~~~~~~~-~~~~i~~~d~~g~~~~~~~~~l~l~rp~~ 97 (146)
T PF05751_consen 44 AYNQDIDRERAAEALGWKAELTIDD-NSLTIRLTDPNGAPVSGAKLTLSLYRPTD 97 (146)
T ss_pred hhhhhhHHHHHHHhcCccceeeecC-CeEEEEEEcCCCCcCcCceEEEEEECCCC
Confidence 3455555555544445554432222 33344554467777777777777776644
No 96
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=22.59 E-value=1.5e+02 Score=21.67 Aligned_cols=24 Identities=17% Similarity=0.587 Sum_probs=20.3
Q ss_pred CcEEEEEEecCCCCC------------------CCCCeEEEe
Q 033896 51 GGVFKLELFLPEDYP------------------MSAPKVRFL 74 (109)
Q Consensus 51 g~~~~~~i~f~~~YP------------------~~pP~v~f~ 74 (109)
.|.|.|+-..|.-|| ..||-|.|.
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 488999999999997 568888886
No 97
>COG4468 GalT Galactose-1-phosphate uridyltransferase [Carbohydrate transport and metabolism]
Probab=22.06 E-value=85 Score=24.41 Aligned_cols=24 Identities=42% Similarity=1.006 Sum_probs=18.4
Q ss_pred CCcEEEEEEecCC-----CCCCCCCeEEEecCCccccc
Q 033896 50 EGGVFKLELFLPE-----DYPMSAPKVRFLTKIYHPNI 82 (109)
Q Consensus 50 ~g~~~~~~i~f~~-----~YP~~pP~v~f~~~i~Hpnv 82 (109)
.||.|.+.+.+.+ .||. .||||+=
T Consensus 362 R~~~yELDlVLRnNrT~e~yPd---------GIFHPH~ 390 (503)
T COG4468 362 RGGLYELDLVLRNNRTSEEYPD---------GIFHPHQ 390 (503)
T ss_pred cCCeeEEEEEEecCCccccCCC---------cccCCcH
Confidence 4899999999864 4665 5899963
No 98
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=21.46 E-value=49 Score=24.80 Aligned_cols=16 Identities=31% Similarity=0.677 Sum_probs=13.9
Q ss_pred cEEEEEEecCCCCCCC
Q 033896 52 GVFKLELFLPEDYPMS 67 (109)
Q Consensus 52 ~~~~~~i~f~~~YP~~ 67 (109)
..|..+|.||+.||.+
T Consensus 309 kl~E~~i~FpPsypys 324 (391)
T KOG1976|consen 309 KLKEETIFFPPSYPYS 324 (391)
T ss_pred HHhheeecCCCCCCCC
Confidence 4678999999999986
No 99
>COG2847 Copper(I)-binding protein [Inorganic ion transport and metabolism]
Probab=21.45 E-value=2e+02 Score=19.01 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=24.5
Q ss_pred eeEEEEECCCCCCCCCcEEEEEEecCCC
Q 033896 36 YFNVMILGPSQSPYEGGVFKLELFLPED 63 (109)
Q Consensus 36 ~w~~~i~gp~~tpy~g~~~~~~i~f~~~ 63 (109)
-.|+-+.|++...-+|..+.+++.|-+.
T Consensus 104 gyHvMlm~lK~pl~eGd~v~vtL~f~~~ 131 (151)
T COG2847 104 GYHVMLMGLKKPLKEGDKVPVTLKFEKA 131 (151)
T ss_pred CEEEEEeccCCCccCCCEEEEEEEEecC
Confidence 3688999999999999999999999654
No 100
>TIGR03615 RutF pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.
Probab=21.34 E-value=62 Score=21.12 Aligned_cols=66 Identities=11% Similarity=0.164 Sum_probs=40.8
Q ss_pred HHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecC---CccccccCCCce
Q 033896 12 KETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK---IYHPNIDKLGRI 88 (109)
Q Consensus 12 ~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~---i~Hpnv~~~G~i 88 (109)
+++++....-..|+.+....+ ++.+ .|. ++.-=-.--.+||.+.|.-. .-|+.+.++|.+
T Consensus 4 ~~fr~am~~~~~gV~vVT~~~------------~~~~-~g~----tvss~~svS~~PP~v~v~l~~~s~t~~~i~~s~~F 66 (156)
T TIGR03615 4 QAFRDAMSRLGAAVNIITTDG------------PAGR-AGF----TASAVCSVTDTPPTLLVCLNRSASAYPAFKQNGTL 66 (156)
T ss_pred HHHHHHHhccCCCeEEEEeec------------CCCc-eeE----EEEeEeeccCCCCEEEEEeCCCcchhHHHHhCCeE
Confidence 577888888888887654221 1111 111 11111123457999988632 367888889999
Q ss_pred eccCCC
Q 033896 89 CLDILK 94 (109)
Q Consensus 89 cl~~l~ 94 (109)
++++|.
T Consensus 67 ~VnvL~ 72 (156)
T TIGR03615 67 CVNTLA 72 (156)
T ss_pred EEEECc
Confidence 999985
No 101
>PF08411 Exonuc_X-T_C: Exonuclease C-terminal; InterPro: IPR013620 This bacterial domain is found at the C terminus of exodeoxyribonuclease I/Exonuclease I (IPR013520 from INTERPRO), which is a single-strand specific DNA nuclease affecting recombination and expression pathways. The exonuclease I protein in Escherichia coli is associated with DNA deoxyribophosphodiesterase (dRPase) []. ; GO: 0008852 exodeoxyribonuclease I activity, 0006281 DNA repair; PDB: 2QXF_A 3C94_A 3HL8_A 3C95_A 1FXX_A 3HP9_A.
Probab=21.05 E-value=38 Score=24.36 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=17.9
Q ss_pred cCCCCCCCCCeEEEecCC-ccccccCCCceeccCC
Q 033896 60 LPEDYPMSAPKVRFLTKI-YHPNIDKLGRICLDIL 93 (109)
Q Consensus 60 f~~~YP~~pP~v~f~~~i-~Hpnv~~~G~icl~~l 93 (109)
++.-||.+---+...-++ .||. ++|+.||.|+.
T Consensus 21 vS~~~~a~~~~~~~v~Pla~hp~-nkN~vI~~DL~ 54 (269)
T PF08411_consen 21 VSGMFGAERGCTSLVLPLAQHPT-NKNAVICFDLS 54 (269)
T ss_dssp E-GGG-GGGTTEEEEEEEEE-SS--TTEEEEEETT
T ss_pred ecccchhhcCCceEEEeeeeCCC-CCCeEEEEECC
Confidence 344455444444445555 5765 67889999976
No 102
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=20.59 E-value=89 Score=18.75 Aligned_cols=20 Identities=35% Similarity=0.866 Sum_probs=10.1
Q ss_pred CCCCCCCCCcEEEEEEecCCCC
Q 033896 43 GPSQSPYEGGVFKLELFLPEDY 64 (109)
Q Consensus 43 gp~~tpy~g~~~~~~i~f~~~Y 64 (109)
||+..|-.+.+|+++ ||++.
T Consensus 1 G~d~~P~RdHVFhlt--FPkeW 20 (87)
T PF08675_consen 1 GPDPQPSRDHVFHLT--FPKEW 20 (87)
T ss_dssp SS----SGCCEEEEE----TT-
T ss_pred CCCCCCCcceEEEEe--CchHh
Confidence 677788888888876 88775
No 103
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=20.05 E-value=1.9e+02 Score=20.65 Aligned_cols=25 Identities=16% Similarity=0.442 Sum_probs=20.3
Q ss_pred CCcEEEEEEecCCCCC------------------CCCCeEEEe
Q 033896 50 EGGVFKLELFLPEDYP------------------MSAPKVRFL 74 (109)
Q Consensus 50 ~g~~~~~~i~f~~~YP------------------~~pP~v~f~ 74 (109)
+.|.|.|.-..|.-|| ..||-|.|.
T Consensus 149 ~~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~ 191 (246)
T TIGR02465 149 ADGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYK 191 (246)
T ss_pred CCCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEE
Confidence 3588999999999997 368888876
Done!