Query 033896
Match_columns 109
No_of_seqs 132 out of 1062
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 12:29:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fo3_A Ubiquitin-conjugating e 100.0 8.4E-44 2.9E-48 227.2 11.9 106 4-109 5-111 (125)
2 2h2y_A Ubiquitin-conjugating e 100.0 3.7E-43 1.3E-47 227.1 13.0 106 4-109 19-125 (136)
3 2c2v_B Ubiquitin-conjugating e 100.0 2E-43 6.8E-48 232.5 10.9 108 2-109 2-109 (154)
4 2a7l_A Hypothetical ubiquitin- 100.0 2E-43 6.9E-48 228.2 10.7 103 7-109 24-130 (136)
5 3rz3_A Ubiquitin-conjugating e 100.0 4E-43 1.4E-47 236.7 12.4 109 1-109 3-125 (183)
6 2e2c_A Ubiquitin conjugating e 100.0 5.4E-43 1.8E-47 230.9 12.5 107 3-109 7-113 (156)
7 4gpr_A Ubiquitin-conjugating e 100.0 5E-43 1.7E-47 229.9 11.7 107 3-109 2-108 (151)
8 1ayz_A UBC2, ubiquitin-conjuga 100.0 3.8E-43 1.3E-47 234.2 11.2 108 1-109 1-108 (169)
9 2ayv_A Ubiquitin-conjugating e 100.0 1E-42 3.5E-47 231.5 13.0 107 3-109 19-125 (166)
10 1z2u_A Ubiquitin-conjugating e 100.0 6.6E-43 2.3E-47 229.1 11.5 107 3-109 2-108 (150)
11 2ucz_A UBC7, ubiquitin conjuga 100.0 8E-43 2.7E-47 231.9 11.7 108 1-109 1-122 (165)
12 1zdn_A Ubiquitin-conjugating e 100.0 4.8E-43 1.6E-47 231.5 10.5 107 3-109 11-117 (158)
13 2aak_A UBC1, ubiquitin conjuga 100.0 9.7E-43 3.3E-47 228.8 11.4 107 3-109 2-108 (152)
14 2r0j_A Ubiquitin carrier prote 100.0 8.7E-43 3E-47 228.4 11.0 104 6-109 2-105 (149)
15 1jat_A Ubiquitin-conjugating e 100.0 1.1E-42 3.8E-47 229.2 11.2 107 3-109 3-109 (155)
16 2c4o_A Ubiquitin-conjugating e 100.0 1.8E-42 6.2E-47 230.1 12.1 106 4-109 18-123 (165)
17 1yh2_A HSPC150 protein similar 100.0 1.9E-42 6.4E-47 230.9 11.9 107 3-109 2-112 (169)
18 3h8k_A Ubiquitin-conjugating e 100.0 2.8E-42 9.6E-47 229.0 12.5 107 3-109 1-121 (164)
19 1i7k_A Ubiquitin-conjugating e 100.0 1.2E-42 4.2E-47 233.4 10.4 108 2-109 27-134 (179)
20 2awf_A Ubiquitin-conjugating e 100.0 1.1E-41 3.9E-46 227.6 13.1 108 2-109 14-135 (172)
21 3rcz_B SUMO-conjugating enzyme 100.0 4.4E-42 1.5E-46 227.9 10.5 107 3-109 8-121 (163)
22 1fxt_A Ubiquitin-conjugating e 100.0 3.2E-42 1.1E-46 225.7 9.6 104 6-109 2-107 (149)
23 2bep_A Ubiquitin-conjugating e 100.0 1.1E-41 3.7E-46 225.3 11.4 108 2-109 5-116 (159)
24 1yrv_A Ubiquitin-conjugating l 100.0 3.3E-42 1.1E-46 229.6 8.8 106 4-109 22-130 (169)
25 2f4z_A Tgtwinscan_2721 - E2 do 100.0 1.3E-41 4.3E-46 230.8 11.1 107 3-109 30-150 (193)
26 3bzh_A Ubiquitin-conjugating e 100.0 2.8E-41 9.7E-46 229.3 12.6 105 5-109 48-152 (194)
27 2gjd_A Ubiquitin-conjugating e 100.0 1.6E-41 5.6E-46 224.0 10.0 108 1-109 1-115 (157)
28 2pwq_A Ubiquitin conjugating e 100.0 1.4E-41 4.7E-46 234.0 9.9 107 3-109 21-128 (216)
29 3k9o_A Ubiquitin-conjugating e 100.0 6.3E-41 2.1E-45 228.8 12.2 107 3-109 3-113 (201)
30 2grr_A Ubiquitin-conjugating e 100.0 2.8E-41 9.4E-46 223.7 9.5 107 3-109 5-118 (161)
31 1wzv_A Ubiquitin-conjugating e 100.0 7.3E-41 2.5E-45 220.5 10.6 105 4-109 3-109 (155)
32 1jat_B Ubiquitin-conjugating e 100.0 1.8E-40 6.1E-45 215.0 10.8 108 1-109 2-116 (138)
33 2a4d_A Ubiquitin-conjugating e 100.0 2.4E-40 8.4E-45 218.7 11.1 105 5-109 25-136 (160)
34 1y8x_A Ubiquitin-conjugating e 100.0 5.1E-40 1.8E-44 217.4 10.8 103 4-109 5-108 (160)
35 3e46_A Ubiquitin-conjugating e 100.0 7.2E-40 2.5E-44 229.8 11.3 106 4-109 56-165 (253)
36 1tte_A Ubiquitin-conjugating e 100.0 9.5E-41 3.3E-45 229.6 6.7 105 5-109 2-108 (215)
37 4ds2_A Ubiquitin-conjugating e 100.0 2.4E-40 8.3E-45 220.3 8.1 106 3-108 6-125 (167)
38 2q0v_A Ubiquitin-conjugating e 100.0 1.2E-39 4E-44 214.8 11.2 107 2-109 18-131 (156)
39 2nvu_C NEDD8-conjugating enzym 100.0 7E-40 2.4E-44 220.3 10.0 104 3-109 24-128 (180)
40 3fn1_B NEDD8-conjugating enzym 100.0 1.3E-39 4.5E-44 216.7 11.1 105 4-109 13-124 (167)
41 2y9m_A Ubiquitin-conjugating e 100.0 1.4E-39 4.7E-44 217.6 10.7 108 2-109 3-125 (172)
42 2hlw_A Ubiquitin-conjugating e 100.0 9.2E-40 3.2E-44 217.9 9.6 106 4-109 34-146 (170)
43 2onu_A Ubiquitin-conjugating e 100.0 3E-40 1E-44 216.9 5.6 102 5-109 2-104 (152)
44 1c4z_D UBCH7, ubiquitin conjug 100.0 1.3E-39 4.5E-44 214.3 8.3 103 6-109 3-107 (154)
45 2z5d_A Ubiquitin-conjugating e 100.0 1E-39 3.5E-44 219.1 7.4 105 1-109 20-126 (179)
46 1yf9_A Ubiquitin carrier prote 100.0 3.4E-39 1.2E-43 215.4 8.5 101 5-109 12-113 (171)
47 2f4w_A Ubiquitin-conjugating e 100.0 1.2E-38 4.1E-43 215.4 10.8 105 3-109 12-119 (187)
48 4ddg_A Ubiquitin-conjugating e 100.0 2.5E-38 8.4E-43 234.3 11.3 105 5-109 3-107 (399)
49 1zuo_A Hypothetical protein LO 100.0 4.3E-39 1.5E-43 217.3 5.6 108 2-109 24-148 (186)
50 3o2u_A NEDD8-conjugating enzym 100.0 3.5E-38 1.2E-42 213.6 10.0 103 4-109 28-137 (190)
51 3ceg_A Baculoviral IAP repeat- 100.0 3.4E-37 1.2E-41 221.9 10.8 108 2-109 73-197 (323)
52 2z6o_A UFM1-conjugating enzyme 100.0 2E-32 7E-37 179.7 1.2 96 6-107 33-143 (172)
53 3kpa_A Probable ubiquitin fold 99.8 6.3E-23 2.2E-27 132.2 0.3 89 5-102 34-133 (168)
54 3r3q_A Suppressor protein STP2 99.8 1.1E-18 3.9E-23 114.9 7.3 100 8-108 31-148 (162)
55 3obq_A Tumor susceptibility ge 99.5 1.2E-14 4E-19 94.3 5.6 72 31-108 50-130 (146)
56 2day_A Ring finger protein 25; 97.1 0.0078 2.7E-07 37.2 9.1 71 6-76 9-83 (128)
57 2ebm_A RWD domain-containing p 97.0 0.0081 2.8E-07 37.1 8.8 68 6-75 11-78 (128)
58 2yz0_A Serine/threonine-protei 96.7 0.038 1.3E-06 34.5 10.0 66 9-76 14-86 (138)
59 1ukx_A GCN2, GCN2 EIF2alpha ki 95.1 0.25 8.4E-06 30.6 8.5 68 7-75 12-86 (137)
60 3zqs_A E3 ubiquitin-protein li 94.3 0.41 1.4E-05 31.8 8.4 75 8-107 4-79 (186)
61 2ebk_A RWD domain-containing p 94.3 0.073 2.5E-06 32.8 4.6 67 8-75 10-79 (128)
62 2daw_A RWD domain containing p 93.4 0.095 3.3E-06 33.5 3.9 24 53-76 76-99 (154)
63 2dax_A Protein C21ORF6; RWD do 93.1 0.063 2.2E-06 34.1 2.8 25 52-76 73-97 (152)
64 3u3c_B Paxillin LD2 peptide; 4 83.6 0.86 2.9E-05 19.8 1.9 21 5-25 5-25 (26)
65 2bum_A Protocatechuate 3,4-dio 41.7 29 0.00099 23.1 3.6 25 50-74 109-138 (209)
66 3g9r_A Fusion complex of HIV-1 38.2 23 0.00079 17.2 1.9 15 5-19 28-42 (42)
67 3rls_A YAF9, protein AF-9 homo 33.8 97 0.0033 20.1 6.1 43 32-76 30-72 (175)
68 2rf4_B DNA-directed RNA polyme 31.8 22 0.00075 20.5 1.5 12 6-17 63-74 (87)
69 2cu9_A Spcia1, histone chapero 29.8 88 0.003 20.1 4.2 38 33-70 36-86 (161)
70 2c5k_P Vacuolar protein sortin 29.6 25 0.00087 15.5 1.2 12 8-19 13-24 (26)
71 3pft_A Flavin reductase; desul 29.5 36 0.0012 21.2 2.4 29 67-95 43-74 (157)
72 1m46_B IQ4, IQ4 motif from MYO 27.0 46 0.0016 14.2 1.7 12 6-17 9-20 (26)
73 3qrl_A Transcription initiatio 26.9 1.2E+02 0.0041 18.9 5.5 43 34-78 32-77 (140)
74 2bum_B Protocatechuate 3,4-dio 25.1 46 0.0016 22.7 2.4 25 50-74 134-165 (241)
75 3kxt_A Chromatin protein CREN7 24.7 48 0.0016 17.3 1.9 11 56-66 46-56 (56)
76 3s7v_A Major capsid protein VP 24.6 1.8E+02 0.0061 20.2 5.8 45 43-90 193-239 (277)
77 2ccv_A Helix pomatia agglutini 24.4 1E+02 0.0036 17.8 3.7 24 52-76 29-52 (101)
78 2ys2_A Cytoplasmic tyrosine-pr 24.1 15 0.0005 19.0 -0.2 16 76-91 13-29 (50)
79 1sid_A Polyomavirus coat prote 24.0 2E+02 0.007 20.8 5.6 62 24-90 211-274 (383)
80 3iys_A Major capsid protein VP 23.7 1.6E+02 0.0056 21.0 5.0 50 38-90 195-246 (343)
81 3t63_M 3,4-PCD, protocatechuat 23.6 52 0.0018 22.4 2.4 24 51-74 134-164 (238)
82 3d34_A Spondin-2; cell adhesio 23.3 56 0.0019 22.0 2.5 26 50-75 13-45 (223)
83 3t63_A 3,4-PCD, protocatechuat 22.8 61 0.0021 21.4 2.6 23 52-74 102-129 (200)
84 2xsu_A Catechol 1,2 dioxygenas 22.7 53 0.0018 23.3 2.4 25 50-74 187-229 (312)
85 1u9d_A Hypothetical protein VC 22.6 1.4E+02 0.0047 18.1 4.3 28 6-33 32-59 (122)
86 3rco_A Tudor domain-containing 21.9 71 0.0024 18.3 2.5 19 5-23 29-47 (89)
87 2e6i_A Tyrosine-protein kinase 21.8 22 0.00075 19.3 0.2 15 77-91 14-29 (64)
88 2k6w_A Putative uncharacterize 21.7 1E+02 0.0035 18.5 3.3 27 36-62 81-107 (120)
89 3n9t_A PNPC; phospholipid bind 21.4 58 0.002 22.9 2.4 24 51-74 181-222 (290)
90 2azq_A Catechol 1,2-dioxygenas 21.4 58 0.002 23.1 2.4 24 51-74 184-225 (311)
91 1tmx_A Hydroxyquinol 1,2-dioxy 21.4 59 0.002 22.9 2.4 26 49-74 182-225 (293)
92 3nxg_A Major capsid protein VP 21.0 1.9E+02 0.0064 20.1 4.7 63 23-90 166-230 (272)
93 2ecu_A Flavin reductase (HPAC) 20.4 30 0.001 21.3 0.7 31 66-96 40-73 (149)
94 1sva_1 Simian virus 40; virus 20.3 1.8E+02 0.0061 21.0 4.7 44 44-90 210-255 (361)
No 1
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=8.4e-44 Score=227.24 Aligned_cols=106 Identities=34% Similarity=0.634 Sum_probs=99.3
Q ss_pred CChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCC-ccccc
Q 033896 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI-YHPNI 82 (109)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i-~Hpnv 82 (109)
..+.+||++|++++++++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ +||||
T Consensus 5 ~~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv 84 (125)
T 2fo3_A 5 GNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHV 84 (125)
T ss_dssp ----CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcC
Confidence 35779999999999999999999999999999999999999999999999999999999999999999999997 99999
Q ss_pred cCCCceeccCCCCCCccccchhhhhcC
Q 033896 83 DKLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
+.+|.||+++|.++|+|++++++||++
T Consensus 85 ~~~G~iCl~iL~~~W~P~~~i~~vl~s 111 (125)
T 2fo3_A 85 YSNGDICLSLLGDDYNPSLSISGLVLS 111 (125)
T ss_dssp CTTSBBCCGGGTTTCCTTCCHHHHHHH
T ss_pred CCCCEEEchhcCCCCCCCCcHHHHHHH
Confidence 999999999999999999999999864
No 2
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=3.7e-43 Score=227.06 Aligned_cols=106 Identities=32% Similarity=0.620 Sum_probs=102.1
Q ss_pred CChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCC-ccccc
Q 033896 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI-YHPNI 82 (109)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i-~Hpnv 82 (109)
..+.+||++|+++++++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ +||||
T Consensus 19 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv 98 (136)
T 2h2y_A 19 GNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHV 98 (136)
T ss_dssp TSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999997 99999
Q ss_pred cCCCceeccCCCCCCccccchhhhhcC
Q 033896 83 DKLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
+.+|.||+++|.++|+|++++++||++
T Consensus 99 ~~~G~ICl~iL~~~WsP~~ti~~vL~s 125 (136)
T 2h2y_A 99 YSNGDICLSVLGDDYNPSLSISGLILS 125 (136)
T ss_dssp CTTCCBCCGGGTTTCCTTCCHHHHHHH
T ss_pred CCCCEEECccccCCCCCCCcHHHHHHH
Confidence 999999999999999999999999864
No 3
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2e-43 Score=232.53 Aligned_cols=108 Identities=79% Similarity=1.351 Sum_probs=104.0
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCcccc
Q 033896 2 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (109)
Q Consensus 2 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpn 81 (109)
+|.++.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 2 ~s~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 81 (154)
T 2c2v_B 2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPN 81 (154)
T ss_dssp CSCSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCc
Confidence 46688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCCCccccchhhhhcC
Q 033896 82 IDKLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 82 v~~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
|+.+|.||+++|.++|+|+++|++||++
T Consensus 82 v~~~G~iCl~iL~~~W~p~~~i~~vl~~ 109 (154)
T 2c2v_B 82 VDKLGRICLDILKDKWSPALQIRTVLLS 109 (154)
T ss_dssp BCTTCBBCCHHHHTSCCTTCCHHHHHHH
T ss_pred CccCCeEEchhccCCCCCCCcHHHHHHH
Confidence 9999999999999999999999999863
No 4
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2e-43 Score=228.20 Aligned_cols=103 Identities=33% Similarity=0.670 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHhcCCCCCeEEE--eCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCc--cccc
Q 033896 7 PRRIVKETQRLLSEPAPGISAS--PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIY--HPNI 82 (109)
Q Consensus 7 ~~Rl~~E~~~l~~~~~~~~~~~--~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~--Hpnv 82 (109)
.+||++|++++++++++|+++. ++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++ ||||
T Consensus 24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV 103 (136)
T 2a7l_A 24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHV 103 (136)
T ss_dssp CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTB
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccC
Confidence 4999999999999999999965 78999999999999999999999999999999999999999999999998 9999
Q ss_pred cCCCceeccCCCCCCccccchhhhhcC
Q 033896 83 DKLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
+.+|.||+++|.++|+|+++|++||++
T Consensus 104 ~~~G~ICL~iL~~~WsP~~ti~~vL~s 130 (136)
T 2a7l_A 104 YSNGHICLSILTEDWSPALSVQSVCLS 130 (136)
T ss_dssp CTTCBBCCGGGTTTCCTTSCHHHHHHH
T ss_pred CCCCeEEchhcCCCCCCCCcHHHHHHH
Confidence 999999999999999999999999864
No 5
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=4e-43 Score=236.67 Aligned_cols=109 Identities=40% Similarity=0.803 Sum_probs=102.8
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCeEEE-eCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCcc
Q 033896 1 MASGNLPRRIVKETQRLLSEPAPGISAS-PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (109)
Q Consensus 1 m~s~~~~~Rl~~E~~~l~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~H 79 (109)
|++..+.|||++|++++++++++|+++. ++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 3 m~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 82 (183)
T 3rz3_A 3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWH 82 (183)
T ss_dssp --CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCC
T ss_pred CcchHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCcc
Confidence 8889999999999999999999999999 688899999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeccCCC-------------CCCccccchhhhhcC
Q 033896 80 PNIDKLGRICLDILK-------------DKWSPALQIRTVLLR 109 (109)
Q Consensus 80 pnv~~~G~icl~~l~-------------~~W~p~~~i~~il~~ 109 (109)
|||+.+|.||+++|. ++|+|+++|++||++
T Consensus 83 PnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~s 125 (183)
T 3rz3_A 83 PNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 125 (183)
T ss_dssp TTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHH
T ss_pred CCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHH
Confidence 999999999999996 789999999999864
No 6
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=5.4e-43 Score=230.89 Aligned_cols=107 Identities=40% Similarity=0.769 Sum_probs=103.1
Q ss_pred CCChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccc
Q 033896 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (109)
Q Consensus 3 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv 82 (109)
+..+.+||++|++++++++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 7 ~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 86 (156)
T 2e2c_A 7 RHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNV 86 (156)
T ss_dssp CCCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCccccchhhhhcC
Q 033896 83 DKLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
+.+|.||+++|.++|+|+++|++||++
T Consensus 87 ~~~G~iCl~iL~~~W~p~~~i~~vL~s 113 (156)
T 2e2c_A 87 DQSGNICLDILKENWTASYDVRTILLS 113 (156)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHH
T ss_pred ccCceEECccccccCCCCCcHHHHHHH
Confidence 999999999999999999999999863
No 7
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=5e-43 Score=229.94 Aligned_cols=107 Identities=50% Similarity=0.913 Sum_probs=103.2
Q ss_pred CCChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccc
Q 033896 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (109)
Q Consensus 3 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv 82 (109)
+..+.|||++|+++++++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 81 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNI 81 (151)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCccccchhhhhcC
Q 033896 83 DKLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
+.+|.||+++|.++|+|+++|++||++
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vl~~ 108 (151)
T 4gpr_A 82 NKNGVICLDILKDQWSPALTLSRVLLS 108 (151)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHH
T ss_pred CCCCEEEcccccCCCCCCCcHHHHHHH
Confidence 999999999999999999999999863
No 8
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=3.8e-43 Score=234.20 Aligned_cols=108 Identities=41% Similarity=0.895 Sum_probs=102.9
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccc
Q 033896 1 MASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHP 80 (109)
Q Consensus 1 m~s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hp 80 (109)
|+ ..+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 1 Ms-~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HP 79 (169)
T 1ayz_A 1 MS-TPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHP 79 (169)
T ss_dssp -C-CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred CC-hHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccC
Confidence 54 46789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeccCCCCCCccccchhhhhcC
Q 033896 81 NIDKLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 81 nv~~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
||+.+|.||+++|.++|+|+++|++||++
T Consensus 80 NI~~~G~ICl~iL~~~WsP~~~i~~vL~s 108 (169)
T 1ayz_A 80 NVYANGEICLDILQNRWTPTYDVASILTS 108 (169)
T ss_dssp TBCTTSBBCCGGGTTTCCTTCCHHHHHHH
T ss_pred CCCCCCeEeehhhccCCCCcCcHHHHHHH
Confidence 99999999999999999999999999863
No 9
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1e-42 Score=231.51 Aligned_cols=107 Identities=52% Similarity=0.916 Sum_probs=103.1
Q ss_pred CCChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccc
Q 033896 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (109)
Q Consensus 3 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv 82 (109)
+..+.+||++|++++++++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 19 ~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI 98 (166)
T 2ayv_A 19 FQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNI 98 (166)
T ss_dssp CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTB
T ss_pred CcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCccccchhhhhcC
Q 033896 83 DKLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
+.+|.||+++|.++|+|+++|++||++
T Consensus 99 ~~~G~ICL~iL~~~WsP~~ti~~vL~s 125 (166)
T 2ayv_A 99 NSQGAICLDILKDQWSPALTISKVLLS 125 (166)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHH
T ss_pred CCCCeEEcccccccCCCCCcHHHHHHH
Confidence 999999999999999999999999863
No 10
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=6.6e-43 Score=229.14 Aligned_cols=107 Identities=50% Similarity=0.896 Sum_probs=103.5
Q ss_pred CCChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccc
Q 033896 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (109)
Q Consensus 3 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv 82 (109)
|..+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (150)
T 1z2u_A 2 SHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 81 (150)
T ss_dssp CCHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCccccchhhhhcC
Q 033896 83 DKLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
+.+|.||+++|.++|+|+++|++||++
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vl~~ 108 (150)
T 1z2u_A 82 NSNGSICLDILRSQWSPALTISKVLLS 108 (150)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHH
T ss_pred CCCCeEeeccccCCCCCCCCHHHHHHH
Confidence 999999999999999999999999863
No 11
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=8e-43 Score=231.87 Aligned_cols=108 Identities=40% Similarity=0.864 Sum_probs=101.6
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCeEEEeCC-CCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCcc
Q 033896 1 MASGNLPRRIVKETQRLLSEPAPGISASPAE-DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (109)
Q Consensus 1 m~s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~-~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~H 79 (109)
|++ .+.+||++|++++++++++|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 1 M~~-~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 79 (165)
T 2ucz_A 1 MSK-TAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILH 79 (165)
T ss_dssp -CH-HHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSC
T ss_pred CCh-HHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCcc
Confidence 554 788999999999999999999999865 799999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceeccCC-------------CCCCccccchhhhhcC
Q 033896 80 PNIDKLGRICLDIL-------------KDKWSPALQIRTVLLR 109 (109)
Q Consensus 80 pnv~~~G~icl~~l-------------~~~W~p~~~i~~il~~ 109 (109)
|||+.+|.||+++| .++|+|+++|++||++
T Consensus 80 PNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~s 122 (165)
T 2ucz_A 80 PNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLS 122 (165)
T ss_dssp TTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHH
T ss_pred CCCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHH
Confidence 99999999999999 6789999999999864
No 12
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.8e-43 Score=231.54 Aligned_cols=107 Identities=42% Similarity=0.833 Sum_probs=103.0
Q ss_pred CCChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccc
Q 033896 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (109)
Q Consensus 3 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv 82 (109)
+..+.+||++|++++++++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 11 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 90 (158)
T 1zdn_A 11 PPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNV 90 (158)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred CHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCccccchhhhhcC
Q 033896 83 DKLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
+.+|.||+++|.++|+|+++|++||++
T Consensus 91 ~~~G~iCl~iL~~~W~p~~~i~~vL~~ 117 (158)
T 1zdn_A 91 GANGEICVNVLKRDWTAELGIRHVLLT 117 (158)
T ss_dssp CTTSBBCHHHHTTTCCTTCCHHHHHHH
T ss_pred CCCCEEehhhcCCCCCCCCcHHHHHHH
Confidence 999999999999999999999999863
No 13
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=9.7e-43 Score=228.80 Aligned_cols=107 Identities=41% Similarity=0.907 Sum_probs=102.8
Q ss_pred CCChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccc
Q 033896 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (109)
Q Consensus 3 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv 82 (109)
|..+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 s~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (152)
T 2aak_A 2 STPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI 81 (152)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCccccchhhhhcC
Q 033896 83 DKLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
+.+|.||+++|.++|+|+++|++||++
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vl~~ 108 (152)
T 2aak_A 82 YADGSICLDILQNQWSPIYDVAAILTS 108 (152)
T ss_dssp CTTSBBCCGGGTTSCCTTCCHHHHHHH
T ss_pred CCCCEEechhhcCCCCCCCcHHHHHHH
Confidence 999999999999999999999999863
No 14
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=8.7e-43 Score=228.38 Aligned_cols=104 Identities=76% Similarity=1.295 Sum_probs=100.8
Q ss_pred hhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccccCC
Q 033896 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKL 85 (109)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~~~ 85 (109)
+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 2 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 81 (149)
T 2r0j_A 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 81 (149)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCCCCCCccccchhhhhcC
Q 033896 86 GRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 86 G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
|.||+++|.++|+|+++|++||++
T Consensus 82 G~iCl~iL~~~W~p~~~i~~vl~~ 105 (149)
T 2r0j_A 82 GRICLDILKDKWSPALQIRTVLLS 105 (149)
T ss_dssp CBBCCGGGTTTCCTTSCHHHHHHH
T ss_pred CEEechhcCCCCCCCCcHHHHHHH
Confidence 999999999999999999999863
No 15
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=1.1e-42 Score=229.15 Aligned_cols=107 Identities=72% Similarity=1.321 Sum_probs=102.9
Q ss_pred CCChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccc
Q 033896 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (109)
Q Consensus 3 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv 82 (109)
+..+.+||++|++++++++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 3 ~~~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 82 (155)
T 1jat_A 3 AASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI 82 (155)
T ss_dssp CCSCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred hHHHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCccccchhhhhcC
Q 033896 83 DKLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
+.+|.||+++|.++|+|+++|++||++
T Consensus 83 ~~~G~iCl~iL~~~W~p~~~i~~vl~~ 109 (155)
T 1jat_A 83 DRLGRICLDVLKTNWSPALQIRTVLLS 109 (155)
T ss_dssp CTTCCBCCGGGTTTCCTTCCHHHHHHH
T ss_pred CCCCEEEchhhccCCCCCCCHHHHHHH
Confidence 999999999999999999999999863
No 16
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=1.8e-42 Score=230.14 Aligned_cols=106 Identities=50% Similarity=0.909 Sum_probs=102.3
Q ss_pred CChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCcccccc
Q 033896 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 83 (109)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~ 83 (109)
..+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 18 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~ 97 (165)
T 2c4o_A 18 SMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 97 (165)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCCCccccchhhhhcC
Q 033896 84 KLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 84 ~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
.+|.||+++|.++|+|+++|++||++
T Consensus 98 ~~G~ICl~iL~~~W~P~~ti~~vL~s 123 (165)
T 2c4o_A 98 SNGSICLDILRSQWSPALTISKVLLS 123 (165)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHH
T ss_pred CCCeEeehhhcCCCCCcCcHHHHHHH
Confidence 99999999999999999999999863
No 17
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.9e-42 Score=230.88 Aligned_cols=107 Identities=50% Similarity=0.922 Sum_probs=103.2
Q ss_pred CCChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccc
Q 033896 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (109)
Q Consensus 3 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv 82 (109)
|.++.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv 81 (169)
T 1yh2_A 2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI 81 (169)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCC----CCCccccchhhhhcC
Q 033896 83 DKLGRICLDILK----DKWSPALQIRTVLLR 109 (109)
Q Consensus 83 ~~~G~icl~~l~----~~W~p~~~i~~il~~ 109 (109)
+.+|.||+++|. ++|+|+++|++||++
T Consensus 82 ~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~s 112 (169)
T 1yh2_A 82 DSAGRICLDVLKLPPKGAWRPSLNIATVLTS 112 (169)
T ss_dssp CTTCBBCCGGGSCTTTSCCCTTSCHHHHHHH
T ss_pred CcCCeEecccccCCcccCCCCCCcHHHHHHH
Confidence 999999999998 899999999999863
No 18
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=2.8e-42 Score=229.02 Aligned_cols=107 Identities=38% Similarity=0.794 Sum_probs=101.6
Q ss_pred CCChhHHHHHHHHHHhcCCCCCeEEEeCCC-CCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCcccc
Q 033896 3 SGNLPRRIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (109)
Q Consensus 3 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpn 81 (109)
+..+.|||++|++++++++++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 1 a~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN 80 (164)
T 3h8k_A 1 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPN 80 (164)
T ss_dssp CCHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred CcHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCC
Confidence 356889999999999999999999998765 9999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCC-------------CCCccccchhhhhcC
Q 033896 82 IDKLGRICLDILK-------------DKWSPALQIRTVLLR 109 (109)
Q Consensus 82 v~~~G~icl~~l~-------------~~W~p~~~i~~il~~ 109 (109)
|+.+|.||+++|. ++|+|+++|++||++
T Consensus 81 V~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~ 121 (164)
T 3h8k_A 81 IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLS 121 (164)
T ss_dssp BCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHH
T ss_pred CCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHH
Confidence 9999999999996 789999999999863
No 19
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-42 Score=233.42 Aligned_cols=108 Identities=44% Similarity=0.718 Sum_probs=102.1
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCcccc
Q 033896 2 ASGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (109)
Q Consensus 2 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpn 81 (109)
++..+.+||++|++++++++++|+++.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 106 (179)
T 1i7k_A 27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPN 106 (179)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTT
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCCCccccchhhhhcC
Q 033896 82 IDKLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 82 v~~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
|+.+|.||+++|.++|+|+++|++||++
T Consensus 107 V~~~G~ICL~iL~~~WsP~~ti~~vL~s 134 (179)
T 1i7k_A 107 VDTQGNISLDILKEKWSALYDVRTILLS 134 (179)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHH
T ss_pred cccCCeEEcccCcCcCCCCCCHHHHHHH
Confidence 9999999999999999999999999863
No 20
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=1.1e-41 Score=227.62 Aligned_cols=108 Identities=35% Similarity=0.784 Sum_probs=102.0
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCeEEEeCC-CCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccc
Q 033896 2 ASGNLPRRIVKETQRLLSEPAPGISASPAE-DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHP 80 (109)
Q Consensus 2 ~s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~-~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hp 80 (109)
++..+.|||++|+++|++++++|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 14 ~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HP 93 (172)
T 2awf_A 14 LVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHP 93 (172)
T ss_dssp CCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCT
T ss_pred ChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccC
Confidence 356889999999999999999999999865 7999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceeccCCC-------------CCCccccchhhhhcC
Q 033896 81 NIDKLGRICLDILK-------------DKWSPALQIRTVLLR 109 (109)
Q Consensus 81 nv~~~G~icl~~l~-------------~~W~p~~~i~~il~~ 109 (109)
||+.+|.||+++|. ++|+|+++|++||++
T Consensus 94 NV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~s 135 (172)
T 2awf_A 94 NVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMIS 135 (172)
T ss_dssp TBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHH
T ss_pred CCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHH
Confidence 99999999999996 689999999999863
No 21
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=4.4e-42 Score=227.90 Aligned_cols=107 Identities=34% Similarity=0.720 Sum_probs=101.1
Q ss_pred CCChhHHHHHHHHHHhcCCCCCeEEEeCCC-----CCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCC
Q 033896 3 SGNLPRRIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI 77 (109)
Q Consensus 3 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~-----~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i 77 (109)
|.++.+||++|++++++++++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus 8 ~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i 87 (163)
T 3rcz_B 8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPL 87 (163)
T ss_dssp -CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred cHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCC
Confidence 568999999999999999999999998765 999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCceeccCCCC--CCccccchhhhhcC
Q 033896 78 YHPNIDKLGRICLDILKD--KWSPALQIRTVLLR 109 (109)
Q Consensus 78 ~Hpnv~~~G~icl~~l~~--~W~p~~~i~~il~~ 109 (109)
|||||+.+|.||+++|.. +|+|+++|++||++
T Consensus 88 ~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~ 121 (163)
T 3rcz_B 88 FHPNVYPSGTVCLSILNEEEGWKPAITIKQILLG 121 (163)
T ss_dssp CSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHH
T ss_pred ccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHH
Confidence 999999999999999965 59999999999863
No 22
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=3.2e-42 Score=225.69 Aligned_cols=104 Identities=40% Similarity=0.838 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHHhcCCCCCeEEEeCCC-CCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccccC
Q 033896 6 LPRRIVKETQRLLSEPAPGISASPAED-NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (109)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~~ 84 (109)
+.+||++|++++++++++|+++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~ 81 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 81 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence 579999999999999999999999877 9999999999999999999999999999999999999999999999999998
Q ss_pred -CCceeccCCCCCCccccchhhhhcC
Q 033896 85 -LGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 85 -~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
+|.||+++|.++|+|++++++||++
T Consensus 82 ~~G~iCl~iL~~~W~p~~~i~~vl~~ 107 (149)
T 1fxt_A 82 VTGAICLDILKNAWSPVITLKSALIS 107 (149)
T ss_dssp SSCCBCCHHHHTSCCTTCCHHHHHHH
T ss_pred CCCeEeCCcCCCCCCCCCcHHHHHHH
Confidence 9999999999999999999999863
No 23
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=1.1e-41 Score=225.25 Aligned_cols=108 Identities=44% Similarity=0.832 Sum_probs=101.4
Q ss_pred CCCChhHHHHHHHHHHhcC---CCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCc
Q 033896 2 ASGNLPRRIVKETQRLLSE---PAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIY 78 (109)
Q Consensus 2 ~s~~~~~Rl~~E~~~l~~~---~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~ 78 (109)
++..+.+||++|+++++++ +++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus 5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 84 (159)
T 2bep_A 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 84 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCC
Confidence 3446889999999999985 5789999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC-CCceeccCCCCCCccccchhhhhcC
Q 033896 79 HPNIDK-LGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 79 Hpnv~~-~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
||||+. +|.||+++|.++|+|+++|++||++
T Consensus 85 HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~ 116 (159)
T 2bep_A 85 HPNISSVTGAICLDILKDQWAAAMTLRTVLLS 116 (159)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHH
T ss_pred ccCCCCCCCEEeChhhhccCCCCCcHHHHHHH
Confidence 999995 9999999999999999999999863
No 24
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.3e-42 Score=229.62 Aligned_cols=106 Identities=29% Similarity=0.590 Sum_probs=101.8
Q ss_pred CChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccc-
Q 033896 4 GNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI- 82 (109)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv- 82 (109)
..+.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 22 ~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~ 101 (169)
T 1yrv_A 22 GRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVD 101 (169)
T ss_dssp CHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCccc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCC--CCCccccchhhhhcC
Q 033896 83 DKLGRICLDILK--DKWSPALQIRTVLLR 109 (109)
Q Consensus 83 ~~~G~icl~~l~--~~W~p~~~i~~il~~ 109 (109)
+.+|.||+++|. ++|+|+++|++||++
T Consensus 102 ~~~G~ICL~iL~~~~~WsP~~ti~~vL~s 130 (169)
T 1yrv_A 102 PHTGQPCIDFLDNPEKWNTNYTLSSILLA 130 (169)
T ss_dssp TTTCCBCCHHHHCGGGCCTTCCHHHHHHH
T ss_pred CCCCeEeehhhcCCcCCCCcCCHHHHHHH
Confidence 789999999997 899999999999863
No 25
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-41 Score=230.79 Aligned_cols=107 Identities=45% Similarity=0.841 Sum_probs=98.3
Q ss_pred CCChhHHHHHHHHHHhcCCC-------------CCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCC
Q 033896 3 SGNLPRRIVKETQRLLSEPA-------------PGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAP 69 (109)
Q Consensus 3 s~~~~~Rl~~E~~~l~~~~~-------------~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP 69 (109)
+..+.|||++|+++++++++ .|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 30 ~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP 109 (193)
T 2f4z_A 30 TPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPP 109 (193)
T ss_dssp --CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCC
Confidence 35678999999999999886 79999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCcccccc-CCCceeccCCCCCCccccchhhhhcC
Q 033896 70 KVRFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 70 ~v~f~~~i~Hpnv~-~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
+|+|.|+||||||+ .+|.||+++|.++|+|+++|++||++
T Consensus 110 ~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~s 150 (193)
T 2f4z_A 110 KMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLS 150 (193)
T ss_dssp EEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHH
T ss_pred eEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHH
Confidence 99999999999999 58999999999999999999999863
No 26
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=2.8e-41 Score=229.26 Aligned_cols=105 Identities=50% Similarity=0.862 Sum_probs=101.7
Q ss_pred ChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccccC
Q 033896 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (109)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~~ 84 (109)
.+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 48 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~ 127 (194)
T 3bzh_A 48 TSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINS 127 (194)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceECC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCCCCCCccccchhhhhcC
Q 033896 85 LGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 85 ~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
+|.||+++|.++|+|+++|.+||++
T Consensus 128 ~G~ICL~iL~~~WsP~~ti~~vL~s 152 (194)
T 3bzh_A 128 QGVICLDILKDNWSPALTISKVLLS 152 (194)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHH
T ss_pred CCceechhhhccCCCcCcHHHHHHH
Confidence 9999999999999999999999863
No 27
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=1.6e-41 Score=223.99 Aligned_cols=108 Identities=30% Similarity=0.656 Sum_probs=100.2
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCeEEEeCC-----CCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEec
Q 033896 1 MASGNLPRRIVKETQRLLSEPAPGISASPAE-----DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLT 75 (109)
Q Consensus 1 m~s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~-----~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~ 75 (109)
|+ ..+.+||++|++++++++++|+++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus 1 Ms-~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 79 (157)
T 2gjd_A 1 MS-SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPA 79 (157)
T ss_dssp ---CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCT
T ss_pred CC-hHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccC
Confidence 44 4688999999999999999999998864 48999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCceeccCCCC--CCccccchhhhhcC
Q 033896 76 KIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLR 109 (109)
Q Consensus 76 ~i~Hpnv~~~G~icl~~l~~--~W~p~~~i~~il~~ 109 (109)
++|||||+.+|.||+++|.. +|+|+++|++||++
T Consensus 80 ~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~ 115 (157)
T 2gjd_A 80 GFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLG 115 (157)
T ss_dssp TCCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHH
T ss_pred CCccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHH
Confidence 99999999999999999976 79999999999863
No 28
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=1.4e-41 Score=233.96 Aligned_cols=107 Identities=45% Similarity=0.815 Sum_probs=102.3
Q ss_pred CCChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccc
Q 033896 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (109)
Q Consensus 3 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv 82 (109)
+..+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 21 ~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI 100 (216)
T 2pwq_A 21 GSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNI 100 (216)
T ss_dssp SCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred cCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCCceeccCCCCCCccccchhhhhcC
Q 033896 83 D-KLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 83 ~-~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
+ .+|.||+++|.++|+|+++|++||++
T Consensus 101 ~~~~G~ICL~iL~~~WsP~~ti~~VL~s 128 (216)
T 2pwq_A 101 SSQTGAICLDVLKNEWSPALTIRTALLS 128 (216)
T ss_dssp CTTTCBBCCHHHHHHCCTTCCHHHHHHH
T ss_pred cCCCCEEEchhhcccCCCCCcHHHHHHH
Confidence 9 58999999999999999999999864
No 29
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=6.3e-41 Score=228.83 Aligned_cols=107 Identities=45% Similarity=0.842 Sum_probs=100.8
Q ss_pred CCChhHHHHHHHHHHhcC---CCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCcc
Q 033896 3 SGNLPRRIVKETQRLLSE---PAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (109)
Q Consensus 3 s~~~~~Rl~~E~~~l~~~---~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~H 79 (109)
|..+.+||++|+++++++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus 3 s~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 82 (201)
T 3k9o_A 3 ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWH 82 (201)
T ss_dssp -CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCB
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCccc
Confidence 456789999999999987 36899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC-CCceeccCCCCCCccccchhhhhcC
Q 033896 80 PNIDK-LGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 80 pnv~~-~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
|||+. +|.||+++|.++|+|+++|++||++
T Consensus 83 Pnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~ 113 (201)
T 3k9o_A 83 PNISSVTGAICLDILKDQWAAAMTLRTVLLS 113 (201)
T ss_dssp TTBCTTTCBBCCGGGTTTCCTTCCHHHHHHH
T ss_pred CCCcCCCCeeeCcccccCCCCCCCHHHHHHH
Confidence 99995 9999999999999999999999864
No 30
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=2.8e-41 Score=223.71 Aligned_cols=107 Identities=36% Similarity=0.740 Sum_probs=100.3
Q ss_pred CCChhHHHHHHHHHHhcCCCCCeEEEeCC-----CCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCC
Q 033896 3 SGNLPRRIVKETQRLLSEPAPGISASPAE-----DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI 77 (109)
Q Consensus 3 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~-----~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i 77 (109)
+..+.+||++|++++++++++|+.+.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus 5 ~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 84 (161)
T 2grr_A 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPL 84 (161)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred cHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCc
Confidence 44678999999999999999999998753 6899999999999999999999999999999999999999999999
Q ss_pred ccccccCCCceeccCCCC--CCccccchhhhhcC
Q 033896 78 YHPNIDKLGRICLDILKD--KWSPALQIRTVLLR 109 (109)
Q Consensus 78 ~Hpnv~~~G~icl~~l~~--~W~p~~~i~~il~~ 109 (109)
|||||+.+|.||+++|.. +|+|+++|++||++
T Consensus 85 ~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~ 118 (161)
T 2grr_A 85 FHPNVYPSGTVCLSILEEDKDWRPAITIKQILLG 118 (161)
T ss_dssp CSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHH
T ss_pred ccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHH
Confidence 999999999999999975 89999999999863
No 31
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=7.3e-41 Score=220.47 Aligned_cols=105 Identities=36% Similarity=0.741 Sum_probs=99.7
Q ss_pred CChhHHHHHHHHHHhcCCCCCeEE-EeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccc
Q 033896 4 GNLPRRIVKETQRLLSEPAPGISA-SPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (109)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~~~~-~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv 82 (109)
..+.+||++|++++++++++|+++ .++++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 3 m~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV 81 (155)
T 1wzv_A 3 HMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNV 81 (155)
T ss_dssp --CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcC
Confidence 357899999999999999999999 789999999999999 999999999999999999999999999999999999999
Q ss_pred cCCCceeccCC-CCCCccccchhhhhcC
Q 033896 83 DKLGRICLDIL-KDKWSPALQIRTVLLR 109 (109)
Q Consensus 83 ~~~G~icl~~l-~~~W~p~~~i~~il~~ 109 (109)
+.+|.||+++| .++|+|+++|++||++
T Consensus 82 ~~~G~iCl~iL~~~~W~p~~~i~~vl~~ 109 (155)
T 1wzv_A 82 DENGQICLPIISSENWKPCTKTCQVLEA 109 (155)
T ss_dssp CTTCBCCCGGGCTTTCCTTCCHHHHHHH
T ss_pred CCCCeEeecCCCccCCCCCCcHHHHHHH
Confidence 99999999999 8999999999999863
No 32
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=1.8e-40 Score=214.96 Aligned_cols=108 Identities=30% Similarity=0.467 Sum_probs=96.7
Q ss_pred CCCCChhHHHHHHHHHHhcC-CCCCeEEEeCC-C--CCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecC
Q 033896 1 MASGNLPRRIVKETQRLLSE-PAPGISASPAE-D--NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (109)
Q Consensus 1 m~s~~~~~Rl~~E~~~l~~~-~~~~~~~~~~~-~--~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~ 76 (109)
|++..+.+||++|+++++++ +++|+++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 2 m~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 81 (138)
T 1jat_B 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK 81 (138)
T ss_dssp -CCCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc
Confidence 78888999999999999998 78999998843 3 59999999999999999999999999999999999999999999
Q ss_pred CccccccCC-Cce--eccCCCCCCccccchhhhhcC
Q 033896 77 IYHPNIDKL-GRI--CLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 77 i~Hpnv~~~-G~i--cl~~l~~~W~p~~~i~~il~~ 109 (109)
+|||||+.+ |.| |++++. +|+|++++++||++
T Consensus 82 i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~ 116 (138)
T 1jat_B 82 INLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLD 116 (138)
T ss_dssp CCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHH
T ss_pred cccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHH
Confidence 999999986 999 898875 89999999999863
No 33
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=2.4e-40 Score=218.68 Aligned_cols=105 Identities=25% Similarity=0.445 Sum_probs=97.4
Q ss_pred ChhHHHHHHHHHHhcCCCCC-eEEEe-CCCC--CceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccc
Q 033896 5 NLPRRIVKETQRLLSEPAPG-ISASP-AEDN--MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHP 80 (109)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~-~~~~~-~~~~--~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hp 80 (109)
.+.|||++|++++++++++| +.+.+ +++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus 25 p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HP 104 (160)
T 2a4d_A 25 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMN 104 (160)
T ss_dssp HHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCT
T ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeC
Confidence 47789999999999999888 77776 4554 89999999999999999999999999999999999999999999999
Q ss_pred ccc-CCCceeccCCC--CCCccccchhhhhcC
Q 033896 81 NID-KLGRICLDILK--DKWSPALQIRTVLLR 109 (109)
Q Consensus 81 nv~-~~G~icl~~l~--~~W~p~~~i~~il~~ 109 (109)
||+ .+|.||+++|. ++|+|+++|++||++
T Consensus 105 NV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~s 136 (160)
T 2a4d_A 105 GVNSSNGVVDPRAISVLAKWQNSYSIKVVLQE 136 (160)
T ss_dssp TBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHH
T ss_pred CEECCCCEEehhhcCCccCCCccCcHHHHHHH
Confidence 999 69999999997 899999999999864
No 34
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.1e-40 Score=217.41 Aligned_cols=103 Identities=32% Similarity=0.646 Sum_probs=97.5
Q ss_pred CChhHHHHHHHHHHhcCCCCCeEEE-eCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccc
Q 033896 4 GNLPRRIVKETQRLLSEPAPGISAS-PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (109)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv 82 (109)
..+.+||++|++++ ++++|+++. ++++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv 81 (160)
T 1y8x_A 5 SAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI 81 (160)
T ss_dssp CHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred cHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcC
Confidence 45789999999999 578899998 7899999999998 9999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCccccchhhhhcC
Q 033896 83 DKLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 83 ~~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
+.+|.||+++|.++|+|+++|++||++
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vL~~ 108 (160)
T 1y8x_A 82 DLEGNVCLNILREDWKPVLTINSIIYG 108 (160)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHH
T ss_pred CCCCeEEcccchhhccCCCCHHHHHHH
Confidence 999999999999999999999999863
No 35
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=7.2e-40 Score=229.76 Aligned_cols=106 Identities=45% Similarity=0.847 Sum_probs=100.7
Q ss_pred CChhHHHHHHHHHHhcC---CCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccc
Q 033896 4 GNLPRRIVKETQRLLSE---PAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHP 80 (109)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~---~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hp 80 (109)
..+.+||++|+++++++ ++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus 56 ~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP 135 (253)
T 3e46_A 56 NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHP 135 (253)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccC
Confidence 45789999999999987 478999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC-CCceeccCCCCCCccccchhhhhcC
Q 033896 81 NIDK-LGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 81 nv~~-~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
||+. +|.||+++|.++|+|+++|++||++
T Consensus 136 NV~~~~G~ICL~iL~~~WsP~~ti~~vL~s 165 (253)
T 3e46_A 136 NISSVTGAICLDILKDQWAAAMTLRTVLLS 165 (253)
T ss_dssp TBCTTTCBBCCGGGTTCCCTTCCHHHHHHH
T ss_pred CccCCCCeeecccccCCCCCCCCHHHHHHH
Confidence 9995 9999999999999999999999863
No 36
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=9.5e-41 Score=229.64 Aligned_cols=105 Identities=39% Similarity=0.828 Sum_probs=99.7
Q ss_pred ChhHHHHHHHHHHhcCCCCCeEEEeCCCC-CceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCcccccc
Q 033896 5 NLPRRIVKETQRLLSEPAPGISASPAEDN-MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNID 83 (109)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~-~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~ 83 (109)
.+.+||++|++++++++++|+++.+.++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~ 81 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 81 (215)
T ss_dssp TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence 46799999999999999999999997764 56999999999999999999999999999999999999999999999999
Q ss_pred C-CCceeccCCCCCCccccchhhhhcC
Q 033896 84 K-LGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 84 ~-~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
. +|.||+++|.++|+|+++|++||++
T Consensus 82 ~~~G~ICL~iL~~~WsP~~ti~~VL~s 108 (215)
T 1tte_A 82 SVTGAICLDILRNAWSPVITLKSALIS 108 (215)
T ss_dssp SSSSCCCSSTTTCCSCTTCCHHHHHHH
T ss_pred CCCCEEECccCCCCCCCcCcHHHHHHH
Confidence 9 9999999999999999999999864
No 37
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=2.4e-40 Score=220.30 Aligned_cols=106 Identities=28% Similarity=0.557 Sum_probs=100.4
Q ss_pred CCChhHHHHHHHHHHhcCC------------CCCeEEEeCCCCCceeEEEEECCCCCCCC--CcEEEEEEecCCCCCCCC
Q 033896 3 SGNLPRRIVKETQRLLSEP------------APGISASPAEDNMRYFNVMILGPSQSPYE--GGVFKLELFLPEDYPMSA 68 (109)
Q Consensus 3 s~~~~~Rl~~E~~~l~~~~------------~~~~~~~~~~~~~~~w~~~i~gp~~tpy~--g~~~~~~i~f~~~YP~~p 68 (109)
|..+.|||++|++++++++ ..|+.+.++++|+++|+++|.||++|||+ ||.|+++|.||++||++|
T Consensus 6 s~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~p 85 (167)
T 4ds2_A 6 KNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEP 85 (167)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSC
T ss_pred cHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCC
Confidence 3467899999999999977 78999999999999999999999999999 999999999999999999
Q ss_pred CeEEEecCCccccccCCCceeccCCCCCCccccchhhhhc
Q 033896 69 PKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLL 108 (109)
Q Consensus 69 P~v~f~~~i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~ 108 (109)
|+|+|.|++|||||+.+|.||+++|.++|+|+++++++|+
T Consensus 86 P~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll 125 (167)
T 4ds2_A 86 PTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIK 125 (167)
T ss_dssp CEEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHH
T ss_pred CEEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHH
Confidence 9999999999999999999999999999999999988653
No 38
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=1.2e-39 Score=214.82 Aligned_cols=107 Identities=29% Similarity=0.515 Sum_probs=98.2
Q ss_pred CCCChhHHHHHHHHHHhcC-CCCCeEEEeCC-C--CCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCC
Q 033896 2 ASGNLPRRIVKETQRLLSE-PAPGISASPAE-D--NMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKI 77 (109)
Q Consensus 2 ~s~~~~~Rl~~E~~~l~~~-~~~~~~~~~~~-~--~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i 77 (109)
++..+.+||++|+++++++ +++|+++.+.+ + |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus 18 ~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i 97 (156)
T 2q0v_A 18 GIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKI 97 (156)
T ss_dssp SCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred ccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEccc
Confidence 3467889999999999998 78899998843 3 599999999999999999999999999999999999999999999
Q ss_pred ccccccCCCce---eccCCCCCCccccchhhhhcC
Q 033896 78 YHPNIDKLGRI---CLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 78 ~Hpnv~~~G~i---cl~~l~~~W~p~~~i~~il~~ 109 (109)
|||||+.+|.| |+++|. +|+|+++|++||++
T Consensus 98 ~HPNV~~~G~icisCL~iL~-~WsP~~ti~~vL~s 131 (156)
T 2q0v_A 98 EMSCVDNCGRVIKNNLHILK-NWNRNYTIETILIS 131 (156)
T ss_dssp CCTTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHH
T ss_pred ccCCCccCCeEehhhccccc-CCCCcCcHHHHHHH
Confidence 99999999999 888886 59999999999864
No 39
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=7e-40 Score=220.26 Aligned_cols=104 Identities=31% Similarity=0.608 Sum_probs=98.1
Q ss_pred CCChhHHHHHHHHHHhcCCCCCeEEE-eCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCcccc
Q 033896 3 SGNLPRRIVKETQRLLSEPAPGISAS-PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPN 81 (109)
Q Consensus 3 s~~~~~Rl~~E~~~l~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpn 81 (109)
+..+.+||++|++++ ++++|+++. ++++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus 24 ~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPN 100 (180)
T 2nvu_C 24 ASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN 100 (180)
T ss_dssp CCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred ccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCC
Confidence 345789999999999 578899998 7899999999998 999999999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCCCccccchhhhhcC
Q 033896 82 IDKLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 82 v~~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
|+.+|.||+++|.++|+|+++|++||++
T Consensus 101 V~~~G~iCl~iL~~~W~p~~~i~~vL~s 128 (180)
T 2nvu_C 101 IDLEGNVALNILREDWKPVLTINSIIYG 128 (180)
T ss_dssp BCTTSBBCCGGGTTSCCTTCCHHHHHHH
T ss_pred CCCCCcEEcccccccCCCCCCHHHHHHH
Confidence 9999999999999999999999999863
No 40
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=1.3e-39 Score=216.72 Aligned_cols=105 Identities=31% Similarity=0.635 Sum_probs=98.5
Q ss_pred CChhHHHHHHHHHHhcCCCCCeEEEe-CCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccc
Q 033896 4 GNLPRRIVKETQRLLSEPAPGISASP-AEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (109)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv 82 (109)
..+.|||++|++++++++++|+++.+ +++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 13 s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 91 (167)
T 3fn1_B 13 SVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNI 91 (167)
T ss_dssp CHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCC
Confidence 45789999999999999999999985 568899999998 8999999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCC------CCccccchhhhhcC
Q 033896 83 DKLGRICLDILKD------KWSPALQIRTVLLR 109 (109)
Q Consensus 83 ~~~G~icl~~l~~------~W~p~~~i~~il~~ 109 (109)
+.+|.||+++|.. +|+|+++|++||++
T Consensus 92 ~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~ 124 (167)
T 3fn1_B 92 TETGEICLSLLREHSIDGTGWAPTRTLKDVVWG 124 (167)
T ss_dssp CTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHH
T ss_pred CCCCEEechhhccCCCCCCCCCCcCcHHHHHHH
Confidence 9999999999965 79999999999863
No 41
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=1.4e-39 Score=217.57 Aligned_cols=108 Identities=33% Similarity=0.652 Sum_probs=97.6
Q ss_pred CCCChhHHHHHHHHHHhc-C-C------CC---CeEEEe-CCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCC
Q 033896 2 ASGNLPRRIVKETQRLLS-E-P------AP---GISASP-AEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAP 69 (109)
Q Consensus 2 ~s~~~~~Rl~~E~~~l~~-~-~------~~---~~~~~~-~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP 69 (109)
++..+.+||++|++++++ + + +. ++.+.+ +++|+++|+++|.||++|||+||.|+++|.||++||++||
T Consensus 3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP 82 (172)
T 2y9m_A 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP 82 (172)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC
Confidence 345688999999999998 4 3 33 467777 8899999999999999999999999999999999999999
Q ss_pred eEEEec-CCcccccc-CCCceeccCCC-CCCccccchhhhhcC
Q 033896 70 KVRFLT-KIYHPNID-KLGRICLDILK-DKWSPALQIRTVLLR 109 (109)
Q Consensus 70 ~v~f~~-~i~Hpnv~-~~G~icl~~l~-~~W~p~~~i~~il~~ 109 (109)
+|+|.| ++|||||+ .+|.||+++|. ++|+|+++|++||++
T Consensus 83 ~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~s 125 (172)
T 2y9m_A 83 KISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHA 125 (172)
T ss_dssp EEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHH
T ss_pred EEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHH
Confidence 999999 99999995 79999999998 899999999999863
No 42
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=9.2e-40 Score=217.87 Aligned_cols=106 Identities=25% Similarity=0.431 Sum_probs=97.9
Q ss_pred CChhHHHHHHHHHHhcCCCCC-eEEEe-CCCC--CceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCcc
Q 033896 4 GNLPRRIVKETQRLLSEPAPG-ISASP-AEDN--MRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (109)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~-~~~~~-~~~~--~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~H 79 (109)
..+.+||++|++++++++++| +.+.+ +++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H 113 (170)
T 2hlw_A 34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM 113 (170)
T ss_dssp CCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccccc
Confidence 357899999999999999888 67776 5554 9999999999999999999999999999999999999999999999
Q ss_pred cccc-CCCceeccCCC--CCCccccchhhhhcC
Q 033896 80 PNID-KLGRICLDILK--DKWSPALQIRTVLLR 109 (109)
Q Consensus 80 pnv~-~~G~icl~~l~--~~W~p~~~i~~il~~ 109 (109)
|||+ .+|.||+++|. ++|+|+++|++||++
T Consensus 114 PNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~s 146 (170)
T 2hlw_A 114 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQE 146 (170)
T ss_dssp SSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHH
T ss_pred CCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHH
Confidence 9999 79999999997 899999999999863
No 43
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=3e-40 Score=216.92 Aligned_cols=102 Identities=31% Similarity=0.732 Sum_probs=95.8
Q ss_pred ChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccccC
Q 033896 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (109)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~~ 84 (109)
++.|||++|+++++++ |+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 sa~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~ 78 (152)
T 2onu_A 2 TSLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDE 78 (152)
T ss_dssp -CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred hHHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcC
Confidence 4679999999999874 7889998999999999999999999999999999999999999999999999999999995
Q ss_pred -CCceeccCCCCCCccccchhhhhcC
Q 033896 85 -LGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 85 -~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
+|.||+++|.++|+|++++++||++
T Consensus 79 ~~G~iCl~il~~~W~p~~~i~~vl~~ 104 (152)
T 2onu_A 79 ASGSVCLDVINQTWTPLYSLVNVFEV 104 (152)
T ss_dssp TTCBBCHHHHHHHCCTTCCHHHHHHT
T ss_pred cCCeEecccccccCCCCCCHHHHHHH
Confidence 9999999999999999999999864
No 44
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=1.3e-39 Score=214.27 Aligned_cols=103 Identities=34% Similarity=0.748 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHhcCCCCCeEEE-eCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccccC
Q 033896 6 LPRRIVKETQRLLSEPAPGISAS-PAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (109)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~~ 84 (109)
+.+||++|++++++++++|+++. ++++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 81 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE 81 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCC
Confidence 56899999999999999999855 47889999999998 99999999999999999999999999999999999999999
Q ss_pred CCceeccCCC-CCCccccchhhhhcC
Q 033896 85 LGRICLDILK-DKWSPALQIRTVLLR 109 (109)
Q Consensus 85 ~G~icl~~l~-~~W~p~~~i~~il~~ 109 (109)
+|.||+++|. ++|+|++++++||++
T Consensus 82 ~G~iCl~iL~~~~W~p~~~i~~vl~~ 107 (154)
T 1c4z_D 82 KGQVCLPVISAENWKPATKTDQVIQS 107 (154)
T ss_dssp TCBBCCTTTSSSSCCTTCCHHHHHHH
T ss_pred CCEEECCCCCCCCCCCCCcHHHHHHH
Confidence 9999999996 899999999999863
No 45
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=1e-39 Score=219.08 Aligned_cols=105 Identities=32% Similarity=0.728 Sum_probs=95.4
Q ss_pred CCCC-ChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCcc
Q 033896 1 MASG-NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYH 79 (109)
Q Consensus 1 m~s~-~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~H 79 (109)
|++. .+.|||++|++++++ +|+++.+. +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus 20 ms~~~~a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~H 95 (179)
T 2z5d_A 20 MSSPSPGKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFH 95 (179)
T ss_dssp ---CCHHHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCB
T ss_pred CCCchHHHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCcc
Confidence 4443 478999999999985 57888886 678999999999999999999999999999999999999999999999
Q ss_pred ccccC-CCceeccCCCCCCccccchhhhhcC
Q 033896 80 PNIDK-LGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 80 pnv~~-~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
|||+. +|.||+++|.++|+|+++|++||++
T Consensus 96 PNV~~~~G~ICL~iL~~~WsP~~ti~~iL~s 126 (179)
T 2z5d_A 96 PNIDEASGTVCLDVINQTWTALYDLTNIFES 126 (179)
T ss_dssp TTBCTTTCBBCHHHHHHHCCTTCCTTHHHHT
T ss_pred CcCCCCCCeEeccccccCCCCCCCHHHHHHH
Confidence 99998 9999999999999999999999874
No 46
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=3.4e-39 Score=215.41 Aligned_cols=101 Identities=33% Similarity=0.689 Sum_probs=93.5
Q ss_pred ChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccccC
Q 033896 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (109)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~~ 84 (109)
.+.+||++|++++++++. ++ ..++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 12 ~~~~RL~~El~~l~~~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~ 87 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDE 87 (171)
T ss_dssp -CCHHHHHHHHHHHSSSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred cHHHHHHHHHHHHHhCCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcc
Confidence 678999999999999874 44 35789999999999999999999999999999999999999999999999999995
Q ss_pred -CCceeccCCCCCCccccchhhhhcC
Q 033896 85 -LGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 85 -~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
+|.||+++|.++|+|+++|++||++
T Consensus 88 ~~G~iCl~iL~~~W~p~~~i~~vL~s 113 (171)
T 1yf9_A 88 RSGSVCLDVINQTWTPMYQLENIFDV 113 (171)
T ss_dssp TTCBBCHHHHHHHCCTTCCTHHHHHT
T ss_pred cCCeEeccccccCCCCCCcHHHHHHH
Confidence 9999999999999999999999864
No 47
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-38 Score=215.37 Aligned_cols=105 Identities=29% Similarity=0.644 Sum_probs=93.0
Q ss_pred CCChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccc
Q 033896 3 SGNLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNI 82 (109)
Q Consensus 3 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv 82 (109)
+..+.+||++|++++++++++|+.+.++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+ |||+
T Consensus 12 ~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~ 89 (187)
T 2f4w_A 12 PTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRF 89 (187)
T ss_dssp --CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSB
T ss_pred ccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Ccee
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred cCCCceeccCC---CCCCccccchhhhhcC
Q 033896 83 DKLGRICLDIL---KDKWSPALQIRTVLLR 109 (109)
Q Consensus 83 ~~~G~icl~~l---~~~W~p~~~i~~il~~ 109 (109)
+.+|.||+++| .++|+|+++|.+||++
T Consensus 90 ~~~G~ICL~iL~~~~~~W~P~~ti~~vL~s 119 (187)
T 2f4w_A 90 KCNTRLCLSITDFHPDTWNPAWSVSTILTG 119 (187)
T ss_dssp CTTSCBC----------CCTTCCHHHHHHH
T ss_pred ccCCeEeeeccccCccCCCCcCcHHHHHHH
Confidence 99999999999 6899999999999863
No 48
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=2.5e-38 Score=234.32 Aligned_cols=105 Identities=50% Similarity=0.880 Sum_probs=102.1
Q ss_pred ChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccccC
Q 033896 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDK 84 (109)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~~ 84 (109)
.+.|||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 3 ~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~ 82 (399)
T 4ddg_A 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 82 (399)
T ss_dssp HHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCCCCCCccccchhhhhcC
Q 033896 85 LGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 85 ~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
+|.||+++|.++|+|++++++||++
T Consensus 83 ~G~iCl~il~~~W~p~~~i~~vL~~ 107 (399)
T 4ddg_A 83 NGSISLDILRSQWSPALTISKVLLS 107 (399)
T ss_dssp TCBBCCGGGTTSCCTTCCHHHHHHH
T ss_pred CCeEeCcccccCCCccccHHHHHHH
Confidence 9999999999999999999999864
No 49
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=4.3e-39 Score=217.34 Aligned_cols=108 Identities=20% Similarity=0.399 Sum_probs=101.1
Q ss_pred CCCChhHHHHHHHHHHhcCC---CCCeEEEeCCCCCceeEEEEECC-CCCCCCC-----------cEEEEEEecCCCCCC
Q 033896 2 ASGNLPRRIVKETQRLLSEP---APGISASPAEDNMRYFNVMILGP-SQSPYEG-----------GVFKLELFLPEDYPM 66 (109)
Q Consensus 2 ~s~~~~~Rl~~E~~~l~~~~---~~~~~~~~~~~~~~~w~~~i~gp-~~tpy~g-----------~~~~~~i~f~~~YP~ 66 (109)
++..+.+||++|++++++++ +.|+++.+.++|+++|+++|.|| ++|||+| |.|+++|.||++||+
T Consensus 24 ~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~ 103 (186)
T 1zuo_A 24 GSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPF 103 (186)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTS
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCC
Confidence 34568899999999999988 68899999999999999999997 9999998 899999999999999
Q ss_pred CCCeEEEecCCccc-cccCCCceeccCCC-CCCccccchhhhhcC
Q 033896 67 SAPKVRFLTKIYHP-NIDKLGRICLDILK-DKWSPALQIRTVLLR 109 (109)
Q Consensus 67 ~pP~v~f~~~i~Hp-nv~~~G~icl~~l~-~~W~p~~~i~~il~~ 109 (109)
+||+|+|.+++||| ||+.+|.||+++|. ++|+|+++|++||++
T Consensus 104 ~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~s 148 (186)
T 1zuo_A 104 DPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQ 148 (186)
T ss_dssp SCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHH
T ss_pred CCCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHH
Confidence 99999999999999 69999999999996 789999999999864
No 50
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=3.5e-38 Score=213.57 Aligned_cols=103 Identities=32% Similarity=0.660 Sum_probs=97.5
Q ss_pred CChhHHHHHHHHHHhcCCCCCeEEE----eCCCCCc---eeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecC
Q 033896 4 GNLPRRIVKETQRLLSEPAPGISAS----PAEDNMR---YFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (109)
Q Consensus 4 ~~~~~Rl~~E~~~l~~~~~~~~~~~----~~~~~~~---~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~ 76 (109)
..+.+||++|+++++ +++|+++. ++++|++ +|+++|. |++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 28 s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 104 (190)
T 3o2u_A 28 SAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKK 104 (190)
T ss_dssp CHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSC
T ss_pred cHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecC
Confidence 567899999999997 77899998 8899999 9999997 888999999999999999999999999999999
Q ss_pred CccccccCCCceeccCCCCCCccccchhhhhcC
Q 033896 77 IYHPNIDKLGRICLDILKDKWSPALQIRTVLLR 109 (109)
Q Consensus 77 i~Hpnv~~~G~icl~~l~~~W~p~~~i~~il~~ 109 (109)
+|||||+.+|.||+++|.++|+|+++|++||++
T Consensus 105 i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~ 137 (190)
T 3o2u_A 105 IFHPNIDLKGNVCLNILREDWSPALDLQSIITG 137 (190)
T ss_dssp CCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHH
T ss_pred cccCCCCCCCeEechhccCCCCCCCCHHHHHHH
Confidence 999999999999999999999999999999863
No 51
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=3.4e-37 Score=221.85 Aligned_cols=108 Identities=31% Similarity=0.681 Sum_probs=99.7
Q ss_pred CCCChhHHHHHHHHHHhcCCCC----CeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecC-
Q 033896 2 ASGNLPRRIVKETQRLLSEPAP----GISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK- 76 (109)
Q Consensus 2 ~s~~~~~Rl~~E~~~l~~~~~~----~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~- 76 (109)
++..+.+||++|++++++++++ ++.+.++++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus 73 ~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~ 152 (323)
T 3ceg_A 73 NSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTG 152 (323)
T ss_dssp CCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCST
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccC
Confidence 3457889999999999998776 45677889999999999999999999999999999999999999999999998
Q ss_pred ----CccccccCCCceeccCCC-------CCCcccc-chhhhhcC
Q 033896 77 ----IYHPNIDKLGRICLDILK-------DKWSPAL-QIRTVLLR 109 (109)
Q Consensus 77 ----i~Hpnv~~~G~icl~~l~-------~~W~p~~-~i~~il~~ 109 (109)
+|||||+.+|.||+++|. ++|+|++ +|.+||++
T Consensus 153 g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLls 197 (323)
T 3ceg_A 153 GHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVS 197 (323)
T ss_dssp TTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHH
T ss_pred CCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHH
Confidence 999999999999999996 6899999 89999864
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.97 E-value=2e-32 Score=179.67 Aligned_cols=96 Identities=19% Similarity=0.303 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCc----------EEEEEEecCCCCCCCCCeEEEec
Q 033896 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGG----------VFKLELFLPEDYPMSAPKVRFLT 75 (109)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~----------~~~~~i~f~~~YP~~pP~v~f~~ 75 (109)
+.+||++|++.+++ ++.+.++|+..|.+++.||++|+|+|| .|++++.||++||.+||+|+|.+
T Consensus 33 w~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~ 106 (172)
T 2z6o_A 33 WVQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPE 106 (172)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGG
T ss_pred HHHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCC
Confidence 38999999999998 467778899999999999999999999 99999999999999999999999
Q ss_pred C-CccccccCCCceeccCC-CC---CCccccchhhhh
Q 033896 76 K-IYHPNIDKLGRICLDIL-KD---KWSPALQIRTVL 107 (109)
Q Consensus 76 ~-i~Hpnv~~~G~icl~~l-~~---~W~p~~~i~~il 107 (109)
. ++|||||.+|+|||++| .. .|+|+++|.++|
T Consensus 107 ~~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL 143 (172)
T 2z6o_A 107 LDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLM 143 (172)
T ss_dssp GTTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHH
T ss_pred CCCCCCCCCCCCcEechhhccccccccCCccCHHHHH
Confidence 8 99999999999999999 43 455999999987
No 53
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.85 E-value=6.3e-23 Score=132.21 Aligned_cols=89 Identities=16% Similarity=0.312 Sum_probs=78.4
Q ss_pred ChhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCc----------EEEEEEecCCCCCCCCCeEEEe
Q 033896 5 NLPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGG----------VFKLELFLPEDYPMSAPKVRFL 74 (109)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~----------~~~~~i~f~~~YP~~pP~v~f~ 74 (109)
.+..||.+|++.|-+ ++...+++-..|...+.||++|+|+|+ .|++++.||.+||.+||.|+|.
T Consensus 34 ~w~~RlkeEy~alI~------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp 107 (168)
T 3kpa_A 34 KWTARLKEEYASLIT------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALP 107 (168)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCG
T ss_pred HHHHHHHHHHHHHHH------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecc
Confidence 367899999999966 455556666789999999999999999 9999999999999999999999
Q ss_pred cC-CccccccCCCceeccCCCCCCccccc
Q 033896 75 TK-IYHPNIDKLGRICLDILKDKWSPALQ 102 (109)
Q Consensus 75 ~~-i~Hpnv~~~G~icl~~l~~~W~p~~~ 102 (109)
+. .+|||+|++|+|||+++ |+|+++
T Consensus 108 ~ldgkt~kmYr~GkICLdIh---wkPlW~ 133 (168)
T 3kpa_A 108 ELEGKTVKMYRGGKICMTTH---FFPLWA 133 (168)
T ss_dssp GGTTTCSSEETTTEECCCTT---HHHHHH
T ss_pred cccCcCccccCCCcEEeccc---cchhhH
Confidence 95 79999999999999987 776543
No 54
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.76 E-value=1.1e-18 Score=114.90 Aligned_cols=100 Identities=23% Similarity=0.420 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhcC-C--CCCeEEEeCCCCCceeEEEEECCCCCCCCCcE---EEEEEecCCCCCCCCCeEEEecC-----
Q 033896 8 RRIVKETQRLLSE-P--APGISASPAEDNMRYFNVMILGPSQSPYEGGV---FKLELFLPEDYPMSAPKVRFLTK----- 76 (109)
Q Consensus 8 ~Rl~~E~~~l~~~-~--~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~---~~~~i~f~~~YP~~pP~v~f~~~----- 76 (109)
+|..+|..++.+. + .+...+...++...++-+.+.|.-..+|+|+. |.+.|-||++||++||.|.|.++
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~ 110 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN 110 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence 5666777776543 2 23334455667777777777777779999998 88999999999999999988651
Q ss_pred -----Cc-cccccCCCceeccCCCCCCcc-ccchhhhhc
Q 033896 77 -----IY-HPNIDKLGRICLDILKDKWSP-ALQIRTVLL 108 (109)
Q Consensus 77 -----i~-Hpnv~~~G~icl~~l~~~W~p-~~~i~~il~ 108 (109)
|+ ||||+.+|+||+++|. +|+| +.++.++|.
T Consensus 111 ~~~~~I~~hpnVD~~G~I~lpyL~-~W~p~~s~L~~ll~ 148 (162)
T 3r3q_A 111 TISSSLPIQEYIDSNGWIALPILH-AWDPAAMNLIMVVQ 148 (162)
T ss_dssp TSCTTSTHHHHBCTTSBBCCGGGG-SCCGGGCCHHHHHH
T ss_pred ccccccCCCCCCCCCCcEeCcccc-cCCCCcCcHHHHHH
Confidence 77 9999999999999994 6999 678988874
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.53 E-value=1.2e-14 Score=94.27 Aligned_cols=72 Identities=22% Similarity=0.497 Sum_probs=61.8
Q ss_pred CCCCceeEEEEECCCCCCCCCcEEEE--EEecCCCCCCCCCeEEEecC------CccccccCCCceeccCCCCCCcc-cc
Q 033896 31 EDNMRYFNVMILGPSQSPYEGGVFKL--ELFLPEDYPMSAPKVRFLTK------IYHPNIDKLGRICLDILKDKWSP-AL 101 (109)
Q Consensus 31 ~~~~~~w~~~i~gp~~tpy~g~~~~~--~i~f~~~YP~~pP~v~f~~~------i~Hpnv~~~G~icl~~l~~~W~p-~~ 101 (109)
..+++.|.++|. .+|+|+.|.+ .|-||++||++||.| |.++ ..||||+.+|+||++.|.+ |++ ..
T Consensus 50 ~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~~-W~~~~s 123 (146)
T 3obq_A 50 SRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLHE-WKHPQS 123 (146)
T ss_dssp TCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHHT-CCTTTC
T ss_pred hheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEecccccc-cCCCCC
Confidence 468999999997 5899999984 899999999999999 6655 4899999999999999955 987 77
Q ss_pred chhhhhc
Q 033896 102 QIRTVLL 108 (109)
Q Consensus 102 ~i~~il~ 108 (109)
++.+++.
T Consensus 124 nL~~ll~ 130 (146)
T 3obq_A 124 DLLGLIQ 130 (146)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 8877763
No 56
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=97.06 E-value=0.0078 Score=37.21 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHhcCCCCCeEEEeCC--CCCceeEEEEECCCCCCC--CCcEEEEEEecCCCCCCCCCeEEEecC
Q 033896 6 LPRRIVKETQRLLSEPAPGISASPAE--DNMRYFNVMILGPSQSPY--EGGVFKLELFLPEDYPMSAPKVRFLTK 76 (109)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~--~~~~~w~~~i~gp~~tpy--~g~~~~~~i~f~~~YP~~pP~v~f~~~ 76 (109)
...+...|+..|+.--...+.+.-.. .+...+.+.+..+.+..- ..-.+.+.+.+|++||..+|.+...+.
T Consensus 9 ~~e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~ 83 (128)
T 2day_A 9 EDWVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP 83 (128)
T ss_dssp CCCHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred hHHHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence 33567889988875444445443222 123344445542211111 124788999999999999999998863
No 57
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.00 E-value=0.0081 Score=37.12 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHhcCCCCCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEec
Q 033896 6 LPRRIVKETQRLLSEPAPGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLT 75 (109)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~ 75 (109)
...+...|+..|+.--...+.+. .+....+.+.+....+..-+.-.+.+.+.+|++||.+||.+.+.+
T Consensus 11 ~~e~q~~EleaL~sIy~d~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 11 YGEEQRNELEALESIYPDSFTVL--SENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEC--CSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHccCceEEc--cCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 34567788888875433444432 222355555554211212233478899999999999999998876
No 58
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.038 Score=34.50 Aligned_cols=66 Identities=14% Similarity=0.192 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEeCC-------CCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecC
Q 033896 9 RIVKETQRLLSEPAPGISASPAE-------DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (109)
Q Consensus 9 Rl~~E~~~l~~~~~~~~~~~~~~-------~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~ 76 (109)
+-..|+..|+.--...+.+ ... .....+.+.+....+ .-..-.+.+.+.+|++||..+|.|.+.+.
T Consensus 14 ~q~~EleaL~SIY~d~~~~-~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~ 86 (138)
T 2yz0_A 14 IQCNELEAIRSIYMDDFTD-LTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV 86 (138)
T ss_dssp HHHHHHHHHHTTSSSSEEC-CSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred HHHHHHHHHHHHChhhhee-cccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence 4566777776533333322 121 124567777763222 11234788999999999999999998753
No 59
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=95.08 E-value=0.25 Score=30.57 Aligned_cols=68 Identities=16% Similarity=0.189 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhcCCCCCeEEEeCCC-----CCceeEEEEECCCC-C-CCCCcEEEEEEecCCCCCCCCCeEEEec
Q 033896 7 PRRIVKETQRLLSEPAPGISASPAED-----NMRYFNVMILGPSQ-S-PYEGGVFKLELFLPEDYPMSAPKVRFLT 75 (109)
Q Consensus 7 ~~Rl~~E~~~l~~~~~~~~~~~~~~~-----~~~~w~~~i~gp~~-t-py~g~~~~~~i~f~~~YP~~pP~v~f~~ 75 (109)
..+...|+..|+.--...+...-... ....+.+.+. +.+ . .-..-.+.+.+.||++||.++|.|.+.+
T Consensus 12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 86 (137)
T 1ukx_A 12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN 86 (137)
T ss_dssp HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred HHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence 44567788877653333343321111 1344555554 221 0 0012468999999999999999998853
No 60
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=94.32 E-value=0.41 Score=31.79 Aligned_cols=75 Identities=19% Similarity=0.309 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCCCCeE-EEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccccCCC
Q 033896 8 RRIVKETQRLLSEPAPGIS-ASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLG 86 (109)
Q Consensus 8 ~Rl~~E~~~l~~~~~~~~~-~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~~~G 86 (109)
.+|.+|+.++ |.. +.-.+.++....+.+.... |....+++.++.+||.++|.+...-|. |.
T Consensus 4 ~~li~Ei~~i------GW~~l~~id~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~----- 65 (186)
T 3zqs_A 4 SSLIEEIGTL------GWDKLVYADTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPV--PF----- 65 (186)
T ss_dssp CSHHHHHHHH------CGGGEEEECTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSS--CC-----
T ss_pred HHHHHHHHHh------CCceeeeecCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCC--Cc-----
Confidence 4688888887 331 2223567888888887443 568999999999999999987665543 11
Q ss_pred ceeccCCCCCCccccchhhhh
Q 033896 87 RICLDILKDKWSPALQIRTVL 107 (109)
Q Consensus 87 ~icl~~l~~~W~p~~~i~~il 107 (109)
.-.|+|..++.+++
T Consensus 66 -------~~~w~~~ssL~~v~ 79 (186)
T 3zqs_A 66 -------CASWTPQSSLISIY 79 (186)
T ss_dssp -------CCCCCTTCCHHHHH
T ss_pred -------ccccCCCccHHHHH
Confidence 12577777766654
No 61
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.31 E-value=0.073 Score=32.77 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCCC--CeEE-EeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEec
Q 033896 8 RRIVKETQRLLSEPAP--GISA-SPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLT 75 (109)
Q Consensus 8 ~Rl~~E~~~l~~~~~~--~~~~-~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~ 75 (109)
.+...|+..|+.--.. .+.+ .....+...+.+.+.. .+..-..-.+.+.+.+|++||..+|.+...+
T Consensus 10 e~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 10 EPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp HHHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred HHHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence 4566788777542111 2322 1111234567777763 2211112478999999999999999997664
No 62
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=93.37 E-value=0.095 Score=33.52 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=22.1
Q ss_pred EEEEEEecCCCCCCCCCeEEEecC
Q 033896 53 VFKLELFLPEDYPMSAPKVRFLTK 76 (109)
Q Consensus 53 ~~~~~i~f~~~YP~~pP~v~f~~~ 76 (109)
.+.+++.+|.+||..+|.|...+.
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~~ 99 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRSS 99 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEECS
T ss_pred eEEEEEEcCCCCCCCCCcEEEEeC
Confidence 799999999999999999998764
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=93.14 E-value=0.063 Score=34.14 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=22.1
Q ss_pred cEEEEEEecCCCCCCCCCeEEEecC
Q 033896 52 GVFKLELFLPEDYPMSAPKVRFLTK 76 (109)
Q Consensus 52 ~~~~~~i~f~~~YP~~pP~v~f~~~ 76 (109)
-.+.+.+.+|.+||..||.+.....
T Consensus 73 ~~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 73 AMFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEEECSSTTSSCCCCEEECT
T ss_pred ceEEEEEECCCCCCCCCCeEEEEcc
Confidence 3688999999999999999998864
No 64
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=83.61 E-value=0.86 Score=19.78 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=17.4
Q ss_pred ChhHHHHHHHHHHhcCCCCCe
Q 033896 5 NLPRRIVKETQRLLSEPAPGI 25 (109)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~~~ 25 (109)
+.+.||+-|+...+.+|+.|.
T Consensus 5 seldrlllelnavqhnppsg~ 25 (26)
T 3u3c_B 5 SELDRLLLELNAVQHNPPSGX 25 (26)
T ss_pred HHHHHHHHHHhhhccCCCCCC
Confidence 346799999999999998774
No 65
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=41.66 E-value=29 Score=23.13 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=22.0
Q ss_pred CCcEEEEEEecCCCCCC-----CCCeEEEe
Q 033896 50 EGGVFKLELFLPEDYPM-----SAPKVRFL 74 (109)
Q Consensus 50 ~g~~~~~~i~f~~~YP~-----~pP~v~f~ 74 (109)
+.|.|.|+-.+|--||. .||-|.|.
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~ 138 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLI 138 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEE
Confidence 46899999999999998 78888886
No 66
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=38.18 E-value=23 Score=17.23 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=11.6
Q ss_pred ChhHHHHHHHHHHhc
Q 033896 5 NLPRRIVKETQRLLS 19 (109)
Q Consensus 5 ~~~~Rl~~E~~~l~~ 19 (109)
+.++|+..|++.+.+
T Consensus 28 ~~~~~~~~~~~~~~~ 42 (42)
T 3g9r_A 28 SKIKRIENEIKRIKK 42 (42)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 357899999998753
No 67
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=33.75 E-value=97 Score=20.09 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=31.5
Q ss_pred CCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecC
Q 033896 32 DNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTK 76 (109)
Q Consensus 32 ~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~ 76 (109)
+...+|.+-+.|+.+.-...-+=++...+.+.||. |...+..+
T Consensus 30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~P 72 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAP 72 (175)
T ss_dssp TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSS
T ss_pred CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCC
Confidence 45678999999987654444577788999999974 66666554
No 68
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=31.76 E-value=22 Score=20.47 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHH
Q 033896 6 LPRRIVKETQRL 17 (109)
Q Consensus 6 ~~~Rl~~E~~~l 17 (109)
-+||+++||+=|
T Consensus 63 QLKRvQRdlrGL 74 (87)
T 2rf4_B 63 QLKRIQRDFKGL 74 (87)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHhhcCC
Confidence 467888887754
No 69
>2cu9_A Spcia1, histone chaperone CIA1; immunoglobulin fold, structural genomics, NPPSFA; 1.80A {Schizosaccharomyces pombe} SCOP: b.1.22.1 PDB: 2dze_A* 2z34_A 2z3f_A
Probab=29.85 E-value=88 Score=20.06 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=26.6
Q ss_pred CCceeEEEEECCCC-------------CCCCCcEEEEEEecCCCCCCCCCe
Q 033896 33 NMRYFNVMILGPSQ-------------SPYEGGVFKLELFLPEDYPMSAPK 70 (109)
Q Consensus 33 ~~~~w~~~i~gp~~-------------tpy~g~~~~~~i~f~~~YP~~pP~ 70 (109)
+-++|+++..|..+ +|-.-|.++|.+.-++=.+.+-|.
T Consensus 36 ~dlewkliYVgSa~s~~~DQ~Ld~v~VGPi~~G~~kFv~~adpPd~~~IP~ 86 (161)
T 2cu9_A 36 SDLEWKLTYVGSATSQSYDQILDTLLVGPIPIGINKFVFEADPPNIDLLPQ 86 (161)
T ss_dssp SCEEEEEEEESSTTSCCCEEEEEEEEECSCCSEEEEEEEEECCCCGGGSSC
T ss_pred CCeEEEEEEEcCCCCccCCeEeeEEEECCccceEEEEEEEcCCCChhHCCC
Confidence 44599999998554 466668888888876555555444
No 70
>2c5k_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae}
Probab=29.61 E-value=25 Score=15.46 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhc
Q 033896 8 RRIVKETQRLLS 19 (109)
Q Consensus 8 ~Rl~~E~~~l~~ 19 (109)
|++++|+-+++.
T Consensus 13 R~lLkeyY~L~~ 24 (26)
T 2c5k_P 13 RLLLREFYNLEN 24 (26)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHhhhc
Confidence 457788888754
No 71
>3pft_A Flavin reductase; desulfurization, oxidoreductase; HET: FMN; 1.60A {Mycobacterium goodii} SCOP: b.45.1.0
Probab=29.48 E-value=36 Score=21.17 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=22.8
Q ss_pred CCCeEEEec---CCccccccCCCceeccCCCC
Q 033896 67 SAPKVRFLT---KIYHPNIDKLGRICLDILKD 95 (109)
Q Consensus 67 ~pP~v~f~~---~i~Hpnv~~~G~icl~~l~~ 95 (109)
+||.|.+.- .--|+++.++|..|+++|.+
T Consensus 43 ~PP~v~v~i~~~~~t~~~i~~~~~F~Vnvl~~ 74 (157)
T 3pft_A 43 EPPLVAFAVQNSSTTWPKLKDLPSLGISVLGE 74 (157)
T ss_dssp TTTEEEEEEETTCSSHHHHTTSSCEEEEECBT
T ss_pred CCcEEEEEECCCCchHHHHHhCCEEEEEECCH
Confidence 588887752 34688999999999999954
No 72
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=27.02 E-value=46 Score=14.19 Aligned_cols=12 Identities=33% Similarity=0.487 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHH
Q 033896 6 LPRRIVKETQRL 17 (109)
Q Consensus 6 ~~~Rl~~E~~~l 17 (109)
.+|.+.+|+++-
T Consensus 9 lqkkirkelkqr 20 (26)
T 1m46_B 9 LQKKIRKELKQR 20 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 457788888764
No 73
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=26.87 E-value=1.2e+02 Score=18.93 Aligned_cols=43 Identities=14% Similarity=0.243 Sum_probs=32.0
Q ss_pred CceeE--EEEECCCCCCCC-CcEEEEEEecCCCCCCCCCeEEEecCCc
Q 033896 34 MRYFN--VMILGPSQSPYE-GGVFKLELFLPEDYPMSAPKVRFLTKIY 78 (109)
Q Consensus 34 ~~~w~--~~i~gp~~tpy~-g~~~~~~i~f~~~YP~~pP~v~f~~~i~ 78 (109)
+.+|. +-+.|+++.... .-.=++...+.+.|+ .|...+..+-|
T Consensus 32 ~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~--np~r~v~~pPF 77 (140)
T 3qrl_A 32 VRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFA--NPNRTFTDPPF 77 (140)
T ss_dssp CEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSS--SCEEEECSTTC
T ss_pred ccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCC--CCeEEEcCCCc
Confidence 46998 888998887553 456678888999988 47777776643
No 74
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Probab=25.11 E-value=46 Score=22.68 Aligned_cols=25 Identities=20% Similarity=0.562 Sum_probs=21.6
Q ss_pred CCcEEEEEEecCCCCC-------CCCCeEEEe
Q 033896 50 EGGVFKLELFLPEDYP-------MSAPKVRFL 74 (109)
Q Consensus 50 ~g~~~~~~i~f~~~YP-------~~pP~v~f~ 74 (109)
+.|.|.|+-.+|--|| ..||-|.|.
T Consensus 134 ~~G~y~F~TI~Pg~Yp~~~~~~~~RpaHIH~~ 165 (241)
T 2bum_B 134 DNGYYVFRTIKPGPYPWRNRINEWRPAHIHFS 165 (241)
T ss_dssp TTSEEEEEEECCCCEEESSSTTEEECSEEEEE
T ss_pred CCceEEEEEecCCccccCCCCCCCcCceEEEE
Confidence 4599999999999998 478999886
No 75
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=24.65 E-value=48 Score=17.33 Aligned_cols=11 Identities=45% Similarity=1.032 Sum_probs=8.6
Q ss_pred EEEecCCCCCC
Q 033896 56 LELFLPEDYPM 66 (109)
Q Consensus 56 ~~i~f~~~YP~ 66 (109)
|+-.+|++||.
T Consensus 46 fR~k~pddy~~ 56 (56)
T 3kxt_A 46 FRHKLPDDYPI 56 (56)
T ss_dssp EEEECCTTCCC
T ss_pred eeeeCcCcCCC
Confidence 46678999984
No 76
>3s7v_A Major capsid protein VP1; jelly-roll, antiparallel beta sandwich, major capsid protein protein; 2.55A {Ki polyomavirus} PDB: 3s7x_A
Probab=24.57 E-value=1.8e+02 Score=20.17 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=34.9
Q ss_pred CCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccccCCCc--eec
Q 033896 43 GPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGR--ICL 90 (109)
Q Consensus 43 gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~~~G~--icl 90 (109)
.|+-+--|+..|..++.=... .||.+.|....--+.+|++|. +|.
T Consensus 193 ~pDPskNENtRYFG~~tGG~~---TPPVl~ftNt~TTvLLDENGVGpLCk 239 (277)
T 3s7v_A 193 APDPSRNDNCRYFGRVVGGAA---TPPVVSYGNNSTIPLLDENGIGILCL 239 (277)
T ss_dssp EECTTSCCSEEEEEEEECCSS---CCCEEEEESSCCEECCCTTSCCEECT
T ss_pred CCCCCcCcCceeeEEecCCCC---CCCeEEecCceeEEEEcCCCcccccc
Confidence 466666777888888776554 689999999888888998865 775
No 77
>2ccv_A Helix pomatia agglutinin; lectin, snail; HET: A2G NAG; 1.30A {Helix pomatia} SCOP: b.154.1.1 PDB: 2cgy_A* 2cgz_A* 2ce6_A
Probab=24.40 E-value=1e+02 Score=17.78 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=19.5
Q ss_pred cEEEEEEecCCCCCCCCCeEEEecC
Q 033896 52 GVFKLELFLPEDYPMSAPKVRFLTK 76 (109)
Q Consensus 52 ~~~~~~i~f~~~YP~~pP~v~f~~~ 76 (109)
..+...+.|+..|+. +|+|.+.-.
T Consensus 29 R~~~~~V~F~~~F~~-~P~V~v~l~ 52 (101)
T 2ccv_A 29 RELAKNITFASPYCR-PPVVLLSIT 52 (101)
T ss_dssp EEEEEEEECSSCCSS-CCEEEEEEE
T ss_pred eEEEEEeEeCcccCC-CCEEEEEeE
Confidence 468889999999994 999987643
No 78
>2ys2_A Cytoplasmic tyrosine-protein kinase BMX; bone marrow tyrosine kinase gene in chromosome X protein, epithelial and endothelial tyrosine kinase, ETK; NMR {Homo sapiens}
Probab=24.11 E-value=15 Score=18.95 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=11.8
Q ss_pred CCccccccCCCc-eecc
Q 033896 76 KIYHPNIDKLGR-ICLD 91 (109)
Q Consensus 76 ~i~Hpnv~~~G~-icl~ 91 (109)
.-|||.++.+|+ .|..
T Consensus 13 ~~YHPg~~~~g~W~CC~ 29 (50)
T 2ys2_A 13 VKYHSGFFVDGKFLCCQ 29 (50)
T ss_dssp CCCCSSCEETTEESSSC
T ss_pred hhcCCCcccCCeECCCC
Confidence 359999998877 5554
No 79
>1sid_A Polyomavirus coat protein VP1; icosahedral virus; HET: SIA GAL BGC; 3.65A {Mouse polyomavirus} SCOP: b.121.6.1 PDB: 1sie_A*
Probab=23.99 E-value=2e+02 Score=20.83 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=39.3
Q ss_pred CeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccccCCCc--eec
Q 033896 24 GISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGR--ICL 90 (109)
Q Consensus 24 ~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~~~G~--icl 90 (109)
...+..+.+..+-. ....|+-+--|+..|..++.=... .||.+.|....--+.++++|. +|.
T Consensus 211 ~~Kakldkdg~yPV--E~W~PDPskNENtRYFG~~tGG~~---TPPVlqftNt~TTvLLDENGVGpLCk 274 (383)
T 1sid_A 211 ISKAKLDKDGMYPV--EIWHPDPAKNENTRYFGNYTGGTT---TPPVLQFTNTLTTVLLDENGVGPLCK 274 (383)
T ss_dssp SCEEECCSTTTSBT--TTEEECCCSSCSEEEEEEEECCSS---CCCEEEEESSCEEECCCTTSCCCBCS
T ss_pred hhhheeccCCCcce--EEECCCCCcCcCceeeEEecCCCC---CCCeEEeccceeEEEEcCCCcccccc
Confidence 34455555433221 122355556667777777765544 689999999888888898755 774
No 80
>3iys_A Major capsid protein VP1; avian, polyomavirus, APV, icosahedral virus, virus; 11.30A {Budgerigar fledgling disease polyomavi}
Probab=23.71 E-value=1.6e+02 Score=21.00 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=35.5
Q ss_pred EEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccccCCCc--eec
Q 033896 38 NVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGR--ICL 90 (109)
Q Consensus 38 ~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~~~G~--icl 90 (109)
-+..+.|+-+--|+..|..++.=... .||.+.|....--+.++++|. +|.
T Consensus 195 PVE~W~PDPskNENtRYFG~~tGG~~---TPPVlqftNt~TTvLLDENGVGpLCk 246 (343)
T 3iys_A 195 PIECWCPDPAKNENTRYYGNLTGGPE---TPPVLAFTNTTTTILLDENGVGPLCK 246 (343)
T ss_pred ceEEECCCCCcCcCceeeEEecCCCC---CCCeEEeccceeEEEEcCCCcccccc
Confidence 34455666666677777776665443 689999998888888888755 774
No 81
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Probab=23.63 E-value=52 Score=22.44 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCCCC-------CCCeEEEe
Q 033896 51 GGVFKLELFLPEDYPM-------SAPKVRFL 74 (109)
Q Consensus 51 g~~~~~~i~f~~~YP~-------~pP~v~f~ 74 (109)
.|.|.|+-.+|--||. .||-|.|.
T Consensus 134 ~G~y~F~TI~Pg~Yp~p~~~~~~Rp~HIHf~ 164 (238)
T 3t63_M 134 DGYYSFRTIKPGPAPWRNGPNDWRPAHIYFG 164 (238)
T ss_dssp TSEEEEEEECCCCEEESSSTTEEECSEEEEE
T ss_pred CceEEEEEECCcCccCCCCCCCCcCCeEEEE
Confidence 5899999999999986 78999887
No 82
>3d34_A Spondin-2; cell adhesion, extracellular matrix, immune response, polymorphism, secreted, immune system; 1.80A {Homo sapiens}
Probab=23.27 E-value=56 Score=22.02 Aligned_cols=26 Identities=15% Similarity=0.552 Sum_probs=17.9
Q ss_pred CCcEEEEEEe-------cCCCCCCCCCeEEEec
Q 033896 50 EGGVFKLELF-------LPEDYPMSAPKVRFLT 75 (109)
Q Consensus 50 ~g~~~~~~i~-------f~~~YP~~pP~v~f~~ 75 (109)
.-..|++++. +|++||...|-..|..
T Consensus 13 ~~a~Y~vtf~~~ws~~~hpk~yP~~~~~~~~Sp 45 (223)
T 3d34_A 13 APAKYSITFTGKWSQTAFPKQYPLFRPPAQWSS 45 (223)
T ss_dssp SCEEEEEEEEECCCTTTCCTTCCCSSSCSEEEE
T ss_pred CceEEEEEEEEeecCccCCccCccccCCCCccc
Confidence 3456666665 8999999766666654
No 83
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ...
Probab=22.81 E-value=61 Score=21.40 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.5
Q ss_pred cEEEEEEecCCCCCCC-----CCeEEEe
Q 033896 52 GVFKLELFLPEDYPMS-----APKVRFL 74 (109)
Q Consensus 52 ~~~~~~i~f~~~YP~~-----pP~v~f~ 74 (109)
|.|.|+-.+|--||.. ||-|.|.
T Consensus 102 G~~~F~TI~Pg~Y~~~~g~~rp~HIH~~ 129 (200)
T 3t63_A 102 GEWTLHTVKPGVVNNAAGVPMAPHINIS 129 (200)
T ss_dssp CSEEEEEECCCCEECTTSCEECSCEEEE
T ss_pred CEEEEEEECCcCcCCCCCCccCCEEEEE
Confidence 8999999999999986 7888776
No 84
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*
Probab=22.66 E-value=53 Score=23.33 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=20.7
Q ss_pred CCcEEEEEEecCCCCC------------------CCCCeEEEe
Q 033896 50 EGGVFKLELFLPEDYP------------------MSAPKVRFL 74 (109)
Q Consensus 50 ~g~~~~~~i~f~~~YP------------------~~pP~v~f~ 74 (109)
+.|.|.|+-.+|--|| ..||-|.|.
T Consensus 187 ~~G~y~F~TI~Pg~Y~ip~dGp~G~lL~~~grh~~RpaHIH~~ 229 (312)
T 2xsu_A 187 VNGKYVALTTMPVGYGCPPEGTTQALLNKLGRHGNRPSHVHYF 229 (312)
T ss_dssp TTSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CCceEEEEEECcCcccCCCCCcHHHHHHHhhccCCCCceEEEE
Confidence 3588999999999998 458888876
No 85
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=22.61 E-value=1.4e+02 Score=18.10 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHhcCCCCCeEEEeCCCC
Q 033896 6 LPRRIVKETQRLLSEPAPGISASPAEDN 33 (109)
Q Consensus 6 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~ 33 (109)
..+.|..||.++.+-+...+++...+..
T Consensus 32 lS~~Lid~La~i~~~~~e~fTle~i~s~ 59 (122)
T 1u9d_A 32 LVPTLLNELSSLLSTARNAFTFELINTQ 59 (122)
T ss_dssp HHHHHHHHHHHHHTCCGGGCEEEECCCC
T ss_pred HhHHHHHHHHHHHCCCcccEEEEEeeeE
Confidence 4567889999999999999988765543
No 86
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} PDB: 2lh9_A
Probab=21.87 E-value=71 Score=18.32 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=15.5
Q ss_pred ChhHHHHHHHHHHhcCCCC
Q 033896 5 NLPRRIVKETQRLLSEPAP 23 (109)
Q Consensus 5 ~~~~Rl~~E~~~l~~~~~~ 23 (109)
..+++|++|++.+..++.|
T Consensus 29 vtl~~L~~DYr~l~G~~iP 47 (89)
T 3rco_A 29 VALPRLQGEYRSLTGDWIP 47 (89)
T ss_dssp EEHHHHHHHHHHHHSSCCC
T ss_pred CCHHHHHHHHHHHhCCcCC
Confidence 4578999999999887654
No 87
>2e6i_A Tyrosine-protein kinase ITK/TSK; BTK, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.81 E-value=22 Score=19.26 Aligned_cols=15 Identities=40% Similarity=0.687 Sum_probs=11.5
Q ss_pred CccccccCCCc-eecc
Q 033896 77 IYHPNIDKLGR-ICLD 91 (109)
Q Consensus 77 i~Hpnv~~~G~-icl~ 91 (109)
-|||.++.+|. .|..
T Consensus 14 ~yHPg~~~~GkW~CC~ 29 (64)
T 2e6i_A 14 KYHPNFWMDGKWRCCS 29 (64)
T ss_dssp EECSSCBCSSSBSSSC
T ss_pred hcCCCceeCCeECCCC
Confidence 48999998877 5554
No 88
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer protein, metal transport; NMR {Thermus thermophilus} PDB: 2k6y_A 2k6z_A 2k70_A
Probab=21.72 E-value=1e+02 Score=18.46 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=23.3
Q ss_pred eeEEEEECCCCCCCCCcEEEEEEecCC
Q 033896 36 YFNVMILGPSQSPYEGGVFKLELFLPE 62 (109)
Q Consensus 36 ~w~~~i~gp~~tpy~g~~~~~~i~f~~ 62 (109)
-.|+.+.|.+..+-+|..+.+++.|-+
T Consensus 81 G~HvML~gl~~~l~~G~~v~ltL~Fe~ 107 (120)
T 2k6w_A 81 GYHFMLLGLKRPLKAGEEVELDLLFAG 107 (120)
T ss_dssp TEEEEEEEESSCBCTTCEEEEEEEETT
T ss_pred ceEEEEeCCCCCCCCCCEEEEEEEECC
Confidence 368999998888889999999999964
No 89
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida}
Probab=21.44 E-value=58 Score=22.86 Aligned_cols=24 Identities=25% Similarity=0.690 Sum_probs=20.8
Q ss_pred CcEEEEEEecCCCCCC------------------CCCeEEEe
Q 033896 51 GGVFKLELFLPEDYPM------------------SAPKVRFL 74 (109)
Q Consensus 51 g~~~~~~i~f~~~YP~------------------~pP~v~f~ 74 (109)
.|.|.|+-.+|--||. .||-|.|.
T Consensus 181 ~G~y~F~TI~Pg~Yp~p~dGp~G~ll~~~grh~~RpaHIHf~ 222 (290)
T 3n9t_A 181 DGCFAIQTTVPVCYPIPTDGPVGEMLDAANRHAWRPAHLHFM 222 (290)
T ss_dssp TSEEEEEEECCCCEECCCSSHHHHHHHHHTCCCEECCEEEEE
T ss_pred CceEEEEEeCCCCcCCCCCCcHHHHHHhccCCCCcCceEEEE
Confidence 4899999999999994 58888886
No 90
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida}
Probab=21.43 E-value=58 Score=23.11 Aligned_cols=24 Identities=21% Similarity=0.537 Sum_probs=20.7
Q ss_pred CcEEEEEEecCCCCC------------------CCCCeEEEe
Q 033896 51 GGVFKLELFLPEDYP------------------MSAPKVRFL 74 (109)
Q Consensus 51 g~~~~~~i~f~~~YP------------------~~pP~v~f~ 74 (109)
.|.|.|+-.+|--|| ..||-|.|.
T Consensus 184 ~G~y~F~TI~Pg~Y~~p~dGp~g~lL~~~grh~~RpaHIHf~ 225 (311)
T 2azq_A 184 EGRYRARSIVPSGYGCDPQGPTQECLDLLGRHGQRPAHVHFF 225 (311)
T ss_dssp TCEEEEEEECCCCEECCTTSHHHHHHHHHTCCCEECCEEEEE
T ss_pred CceEEEEEEcCCCcCCCCCCcHHHHHHhhhccCCCCceEEEE
Confidence 489999999999998 458899886
No 91
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex}
Probab=21.37 E-value=59 Score=22.88 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=21.5
Q ss_pred CCCcEEEEEEecCCCCCC------------------CCCeEEEe
Q 033896 49 YEGGVFKLELFLPEDYPM------------------SAPKVRFL 74 (109)
Q Consensus 49 y~g~~~~~~i~f~~~YP~------------------~pP~v~f~ 74 (109)
-+.|.|.|+-.+|--||. .||-|.|.
T Consensus 182 D~~G~y~F~TI~Pg~Yp~p~dGp~G~ll~~~grh~~RpaHIHf~ 225 (293)
T 1tmx_A 182 GPDGGYAFWAITPTPYPIPHDGPVGRMLAATGRSPMRASHLHFM 225 (293)
T ss_dssp CTTSEEEEEEECCCCEECCCSSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CCCceEEEEEECCCcccCCCCCchHHHHHhcccCCCCCceEEEE
Confidence 346899999999999983 58888886
No 92
>3nxg_A Major capsid protein VP1; beta-sandwich jelly roll, viral protein; 1.95A {Jc polyomavirus} PDB: 3nxd_C 3bwr_A* 3bwq_A*
Probab=20.98 E-value=1.9e+02 Score=20.05 Aligned_cols=63 Identities=14% Similarity=0.114 Sum_probs=43.0
Q ss_pred CCeEEEeCCCCCceeEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccccCCCc--eec
Q 033896 23 PGISASPAEDNMRYFNVMILGPSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGR--ICL 90 (109)
Q Consensus 23 ~~~~~~~~~~~~~~w~~~i~gp~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~~~G~--icl 90 (109)
+...+..+.+..+-. ....|+-+--|+..|..++.=... .||.+.|....--+.++++|. +|.
T Consensus 166 p~~Kakldkdg~yPv--E~W~pDPskNENtRYfG~~tGG~~---TPPVlqftNt~TTvLLDENGVGpLCk 230 (272)
T 3nxg_A 166 TEHKAYLDKNKAYPV--ECWVPDPTRNENTRYFGTLTGGEN---VPPVLHITNTATTVLLDEFGVGPLCK 230 (272)
T ss_dssp TTCEEEECSTTTSBG--GGEEECTTSCTTEEEEEEEECSTT---CCCEEEEESSCCEECCCTTSCCCBCG
T ss_pred chhhheeccCCCcce--EEECCCCCcCcCceeEEEecCCCC---CCCeEEecCceeEEEEcCCCcccccc
Confidence 445556555543322 223466667788888888776554 689999999888888998865 774
No 93
>2ecu_A Flavin reductase (HPAC) of 4-hydroxyphenylacetate monooxygnease; flavin diffusible, two-component monooxyge oxidoreductase; HET: 1PG 12P; 1.30A {Thermus thermophilus} PDB: 2ecr_A* 2ed4_A*
Probab=20.36 E-value=30 Score=21.29 Aligned_cols=31 Identities=16% Similarity=0.394 Sum_probs=23.8
Q ss_pred CCCCeEEEec---CCccccccCCCceeccCCCCC
Q 033896 66 MSAPKVRFLT---KIYHPNIDKLGRICLDILKDK 96 (109)
Q Consensus 66 ~~pP~v~f~~---~i~Hpnv~~~G~icl~~l~~~ 96 (109)
.+||.|.+.- .--|+++.++|..|++++.++
T Consensus 40 ~~Pp~v~v~i~~~~~t~~~i~~~~~F~Vnvl~~~ 73 (149)
T 2ecu_A 40 LEPPLVALAVSERAKLLPVLEGAGAFTVSLLREG 73 (149)
T ss_dssp TTTTEEEEEEETTCTHHHHHHHHTEEEEEECBTT
T ss_pred CCCCEEEEEECCCChhHHHHHhCCEEEEEECcHH
Confidence 3688888762 346889999999999999644
No 94
>1sva_1 Simian virus 40; virus coat protein, icosahedral virus; 3.10A {Simian virus 40} SCOP: b.121.6.1
Probab=20.34 E-value=1.8e+02 Score=21.00 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=33.5
Q ss_pred CCCCCCCCcEEEEEEecCCCCCCCCCeEEEecCCccccccCCCc--eec
Q 033896 44 PSQSPYEGGVFKLELFLPEDYPMSAPKVRFLTKIYHPNIDKLGR--ICL 90 (109)
Q Consensus 44 p~~tpy~g~~~~~~i~f~~~YP~~pP~v~f~~~i~Hpnv~~~G~--icl 90 (109)
|+-+--|+..|..++.=... .||.+.|....--+.+|++|. +|.
T Consensus 210 pDPskNENtRYFG~~tGG~~---TPPVlqftNt~TTvLLDENGVGpLCk 255 (361)
T 1sva_1 210 PDPSKNENTRYFGTYTGGEN---VPPVLHITNTATTVLLDEQGVGPLCK 255 (361)
T ss_dssp ECTTTCTTEEEEEEEECCSS---CCCEEEEETTCCEECCCTTSCCCBCS
T ss_pred CCCCcCcCceeeEEecCCCC---CCCeEEecCceeEEEEcCCCcccccc
Confidence 56566677778777776554 689999998888888898755 774
Done!