BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033897
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 115 bits (289), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
Query: 1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
+ D DDI M W GTI+GP ++ HE RIY L + C +YP+ PP V F S+IN+ CVN
Sbjct: 30 LADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPT 89
Query: 61 TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
TG V+ F L +W+R YTME +L L+KEMA P N+KL QP EG F
Sbjct: 90 TGEVQ-TDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 137
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 115 bits (289), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
Query: 1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
+ D DDI M W GTI+GP ++ HE RIY L + C +YP+ PP V F S+IN+ CVN
Sbjct: 31 LADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPT 90
Query: 61 TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
TG V+ F L +W+R YTME +L L+KEMA P N+KL QP EG F
Sbjct: 91 TGEVQ-TDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 71/109 (65%)
Query: 1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
++D +D+ + WTG IIGP T++E RIY LK+ C YPE PP VRF ++INM VN
Sbjct: 50 LEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS 109
Query: 61 TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
GVV+P+ +L WQ Y+++ +L +L++ M + N KL QPPEG +
Sbjct: 110 NGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCY 158
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 112 bits (280), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 71/109 (65%)
Query: 1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
++D +D+ + WTG IIGP T++E RIY LK+ C YPE PP VRF ++INM VN
Sbjct: 60 LEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS 119
Query: 61 TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
GVV+P+ +L WQ Y+++ +L +L++ M + N KL QPPEG +
Sbjct: 120 NGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCY 168
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 111 bits (278), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 71/109 (65%)
Query: 1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
++D +D+ + WTG I+GP T++E RIY LK+ C YPE PP VRF ++INM VN
Sbjct: 32 LEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSS 91
Query: 61 TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
GVV+P+ +L WQ Y+++ +L +L++ M + N KL QPPEG +
Sbjct: 92 NGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCY 140
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 108 bits (271), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 72/109 (66%)
Query: 1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
++D +D+ + WTG IIGP T +E RIY LK+ C YPE PPSVRF ++INM +N+
Sbjct: 35 LEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNS 94
Query: 61 TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
+G+V+ + +L WQ Y+++ +L +L++ M + N KL QPPEG +
Sbjct: 95 SGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTY 143
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 108 bits (271), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 72/109 (66%)
Query: 1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
++D +D+ + WTG IIGP T +E RIY LK+ C YPE PPSVRF ++INM +N+
Sbjct: 40 LEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNS 99
Query: 61 TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
+G+V+ + +L WQ Y+++ +L +L++ M + N KL QPPEG +
Sbjct: 100 SGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTY 148
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 108 bits (270), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 72/109 (66%)
Query: 1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
++D +D+ + WTG IIGP T +E RIY LK+ C YPE PPSVRF ++INM +N+
Sbjct: 29 LEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNS 88
Query: 61 TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
+G+V+ + +L WQ Y+++ +L +L++ M + N KL QPPEG +
Sbjct: 89 SGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTY 137
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 108 bits (270), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 72/109 (66%)
Query: 1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
++D +D+ + WTG IIGP T +E RIY LK+ C YPE PPSVRF ++INM +N+
Sbjct: 30 LEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNS 89
Query: 61 TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
+G+V+ + +L WQ Y+++ +L +L++ M + N KL QPPEG +
Sbjct: 90 SGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTY 138
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 105 bits (263), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Query: 1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
++ DDI + +W+ TI G TV E RIY L +FCD +YP+ PP+V+F ++I M+CV++
Sbjct: 50 LESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDN- 108
Query: 61 TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
G V +L NW R YT+E IL L++EM + N++L QP EG +
Sbjct: 109 CGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVY 157
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 105 bits (263), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Query: 1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
++ DDI + +W+ TI G TV E RIY L +FCD +YP+ PP+V+F ++I M+CV++
Sbjct: 46 LESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDN- 104
Query: 61 TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
G V +L NW R YT+E IL L++EM + N++L QP EG +
Sbjct: 105 CGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVY 153
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GD+IY W TI+GP +V+EG ++ L + DYP KPP V F +RI +N + GV
Sbjct: 29 GDNIY--EWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQ-GV 85
Query: 64 VEPKKFGLLVNWQREYTMEDILTQL 88
+ L NW T+ +L +
Sbjct: 86 ICLDI--LKDNWSPALTISKVLLSI 108
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETG 62
DGD+++ W T+ GP +TV+E Y+L L DYP KPP V+F + V+
Sbjct: 34 DGDNLF--KWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGN 91
Query: 63 VVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHN 97
+ L NW Y + IL L+ + P+N
Sbjct: 92 ICLDI---LKENWTASYDVRTILLSLQSLLGEPNN 123
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GD+IY W TI+GP +V+EG ++ L + +YP KPP V F +RI +N + GV
Sbjct: 74 GDNIY--EWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQ-GV 130
Query: 64 VEPKKFGLLV-NWQREYTMEDILTQL 88
+ +L NW T+ +L +
Sbjct: 131 I---CLDILKDNWSPALTISKVLLSI 153
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 12 WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL 71
W I GP +T +G ++L L +DYP KPP+VRF SR+ + + + +
Sbjct: 36 WNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSIC----LDI 91
Query: 72 LVN-WQREYTMEDILTQLKKEMAAPH 96
L N W Y + ILT ++ + P+
Sbjct: 92 LQNQWSPIYDVAAILTSIQSLLCDPN 117
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP+++ ++G ++ L + DYP KPP V F +RI +N +
Sbjct: 29 GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L W T+ +L + + P+
Sbjct: 87 CLD---ALRSQWSPALTISKVLLSICSLLCDPN 116
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP+++ ++G ++ L + DYP KPP V F +RI +N +
Sbjct: 27 GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNGSI 84
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L W T+ +L + + P+
Sbjct: 85 ---SLDILRSQWSPALTISKVLLSICSLLCDPN 114
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP+++ ++G ++ L + DYP KPP V F +RI +N +
Sbjct: 35 GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 92
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L W T+ +L + + P+
Sbjct: 93 CLDI---LRSQWSPALTISKVLLSICSLLCDPN 122
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP+++ ++G ++ L + DYP KPP V F +RI +N +
Sbjct: 37 GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 94
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L W T+ +L + + P+
Sbjct: 95 CLDI---LRSQWSPALTISKVLLSICSLLCDPN 124
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP+++ ++G ++ L + DYP KPP V F +RI +N +
Sbjct: 29 GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L W T+ +L + + P+
Sbjct: 87 CLDI---LRSQWSPALTISKVLLSICSLLCDPN 116
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP+++ ++G ++ L + DYP KPP V F +RI +N +
Sbjct: 29 GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L W T+ +L + + P+
Sbjct: 87 CLDI---LRSQWSPALTISKVLLSICSLLCDPN 116
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP+++ ++G ++ L + DYP KPP V F +RI +N +
Sbjct: 45 GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 102
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L W T+ +L + + P+
Sbjct: 103 CLDI---LRSQWSPALTISKVLLSICSLLCDPN 132
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP+++ ++G ++ L + DYP KPP V F +RI +N +
Sbjct: 26 GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 83
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L W T+ +L + + P+
Sbjct: 84 CLDI---LRSQWSPALTISKVLLSICSLLCDPN 113
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP+++ ++G ++ L + DYP KPP V F +RI +N +
Sbjct: 29 GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L W T+ +L + + P+
Sbjct: 87 CLDI---LRSQWSPALTISKVLLSICSLLCDPN 116
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP ++ + G ++ L + DYP KPP V F ++I +N + +
Sbjct: 47 GDDMF--HWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAI 104
Query: 64 VEPKKFGLLVN-WQREYTMEDILTQLKKEMAAPH 96
+L + W T+ +L + + P+
Sbjct: 105 C----LDILKDQWSPALTISKVLLSISSLLTDPN 134
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP+++ ++G ++ L + DYP KPP V F +RI +N +
Sbjct: 32 GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 89
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L W T+ +L + + P+
Sbjct: 90 CLDI---LRSQWSPALTISKVLLSICSLLCDPN 119
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP+++ ++G ++ L + DYP KPP V F +RI +N +
Sbjct: 27 GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 84
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L W T+ +L + + P+
Sbjct: 85 CLDI---LRSQWSPALTISKVLLSICSLLCDPN 114
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP+++ ++G ++ L + DYP KPP V F +RI +N +
Sbjct: 37 GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 94
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L W T+ +L + + P+
Sbjct: 95 CLDI---LRSQWSPALTISKVLLSICSLLCDPN 124
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP ++ + G ++ L + DYP KPP V F +RI +N +
Sbjct: 27 GDDLFH--WQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSI 84
Query: 64 VEPKKFGLLVN-WQREYTMEDILTQLKKEMAAPH 96
+L + W T+ +L + + P+
Sbjct: 85 C----LDILRDQWSPALTISKVLLSISSLLTDPN 114
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP+++ ++G ++ L + DYP KPP V F +RI +N +
Sbjct: 27 GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 84
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L W T+ +L + + P+
Sbjct: 85 ---SLDILRSQWSPALTISKVLLSICSLLCDPN 114
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP+++ ++G ++ L + DYP KPP V F +RI +N +
Sbjct: 45 GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 102
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L W T+ +L + + P+
Sbjct: 103 XLDI---LRSQWSPALTISKVLLSICSLLCDPN 132
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP+++ ++G ++ L + DYP KPP V F +RI +N +
Sbjct: 30 GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 87
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L W T+ +L + + P+
Sbjct: 88 ---SLDILRSQWSPALTISKVLLSICSLLCDPN 117
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP+++ ++G ++ L + DYP KPP V F +RI +N +
Sbjct: 29 GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L W T+ +L + + P+
Sbjct: 87 CLDI---LRSQWGPALTISKVLLSICSLLCDPN 116
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP ++ ++G ++ L + DYP KPP + F ++I +N +
Sbjct: 33 GDDLF--HWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 90
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
K L W T+ +L + + P+
Sbjct: 91 ---KLDILRSQWSPALTVSKVLLSICSLLCDPN 120
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETG 62
D +DIY W +IGP +T++EG ++ L +DYP+KPP ++F S I ++ E
Sbjct: 29 DDNDIY--KWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGN 86
Query: 63 V 63
V
Sbjct: 87 V 87
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP + ++G ++ L + DYP KPP V F +RI +N +
Sbjct: 30 GDDLF--HWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 87
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L W T+ +L + + P+
Sbjct: 88 CLDI---LRSQWSPALTISKVLLSICSLLCDPN 117
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP+++ ++G ++ L + DYP KPP V F +RI +N +
Sbjct: 29 GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP ++ ++G ++ L + DYP KPP V F ++I +N +
Sbjct: 32 GDDLF--HWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSI 89
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L W T+ +L + + P+
Sbjct: 90 CLDI---LRSQWSPALTVSKVLLSICSLLCDPN 119
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP+++ ++G ++ L + DYP KPP V F +RI +N +
Sbjct: 26 GDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 83
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W T +GP+++ ++G ++ L + DYP KPP V F +RI +N +
Sbjct: 29 GDDMF--HWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 86
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L W T+ +L + + P+
Sbjct: 87 CLDI---LRSQWSPALTISKVLLSICSLLCDPN 116
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP ++ ++G ++ L + DYP KPP + F ++I +N +
Sbjct: 45 GDDLF--HWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 102
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L W T+ +L + + P+
Sbjct: 103 CLDI---LRSQWSPALTVSKVLLSICSLLCDPN 132
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP ++ ++G ++ L + DYP KPP + F ++I +N +
Sbjct: 29 GDDLF--HWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 86
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L W T+ +L + + P+
Sbjct: 87 CLDI---LRSQWSPALTVSKVLLSICSLLCDPN 116
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD++ W TI+GP ++ ++G ++ L + DYP KPP + F ++I +N +
Sbjct: 33 GDDLF--HWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSI 90
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L W T+ +L + + P+
Sbjct: 91 CLDI---LRSQWSPALTVSKVLLSICSLLCDPN 120
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 12 WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL 71
W I GP T E ++L + ++YP KPP+VRF S++ V + + +
Sbjct: 36 WNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSIC----LDI 91
Query: 72 LVN-WQREYTMEDILTQLKKEMAAPH 96
L N W Y + ILT ++ + P+
Sbjct: 92 LQNRWSPTYDVSSILTSIQSLLDEPN 117
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDD+Y W +I+GP ++ + G ++ L + DYP KPP + F ++I +N +
Sbjct: 28 GDDLY--HWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNI 85
Query: 64 VEPKKFGLLVN-WQREYTMEDILTQL 88
+L + W T+ +L +
Sbjct: 86 C----LDILKDQWSPALTLSKVLLSI 107
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
GDDI+ WT TI GP ++ ++G ++ L + DYP K P V F +++ +N + GV
Sbjct: 30 GDDIF--HWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNIN-KNGV 86
Query: 64 VEPKKFGLLVN-WQREYTMEDILTQLKKEMAAPHNRKLVQP 103
+ +L + W T+ +L + + P+ + P
Sbjct: 87 I---CLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDP 124
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 12 WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL 71
W IIGP +T +E ++L L D++YP KPP V+F S + V + +
Sbjct: 36 WNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEIC----LDI 91
Query: 72 LVN-WQREYTMEDILTQLKKEMAAPH 96
L N W Y + ILT ++ P+
Sbjct: 92 LQNRWTPTYDVASILTSIQSLFNDPN 117
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 11 SWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFG 70
+W I GP T E ++L L ++YP KPP+V+F S++ V + +
Sbjct: 35 TWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSIC----LD 90
Query: 71 LLVN-WQREYTMEDILTQLKKEMAAPH 96
+L N W Y + ILT ++ + P+
Sbjct: 91 ILQNRWSPTYDVAAILTSIQSLLDEPN 117
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 11 SWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFG 70
+W I GP T E ++L L ++YP KPP+V+F S++ V + +
Sbjct: 38 TWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSIC----LD 93
Query: 71 LLVN-WQREYTMEDILTQLKKEMAAPH 96
+L N W Y + ILT ++ + P+
Sbjct: 94 ILQNRWSPTYDVAAILTSIQSLLDEPN 120
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 12 WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL 71
W G I GP T +EG + L + DYP PP ++F ++I ++ +TG + +
Sbjct: 55 WVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAI---CLDV 111
Query: 72 LVN-WQREYTMEDILTQLKKEMAAPH 96
L N W T+ L ++ ++ P
Sbjct: 112 LKNEWSPALTIRTALLSIQALLSDPQ 137
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI--------NM 54
D +D+Y W IIGP +T++EG +++ L KDYP +PP ++F + I
Sbjct: 43 DDNDLY--RWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGD 100
Query: 55 TCVN--HETGVVEPKKFGLLV---NWQREYTMEDILTQLKKEMAAPH 96
C++ HE G K+G W +T+E I+ + +A P+
Sbjct: 101 VCISILHEPG---EDKYGYEKPEERWLPIHTVETIMISVISMLADPN 144
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV 63
G DI+ W G I GP T +EG + L + DYP PP ++F ++I ++ +TG
Sbjct: 71 GGDIH--RWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGA 128
Query: 64 VEPKKFGLLVN-WQREYTMEDILTQLKKEMAAP 95
+ +L + W T+ L ++ +A P
Sbjct: 129 I---CLDILKHEWSPALTIRTALLSIQAMLADP 158
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 6 DIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVE 65
D +R + TI GP + +E I++L+L+ DYP + P VRF ++I ++ +
Sbjct: 29 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRLGRI-- 86
Query: 66 PKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L NW + +L ++ +A+P+
Sbjct: 87 -SLDVLKTNWSPALQIRTVLLSIQALLASPN 116
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 6 DIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVE 65
D +R + TI GP + +E I++L+L+ DYP + P VRF ++I ++ +
Sbjct: 29 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRI-- 86
Query: 66 PKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L NW + +L ++ +A+P+
Sbjct: 87 -SLDVLKTNWSPALQIRTVLLSIQALLASPN 116
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
+D+GD + +W I GP NT +EG ++ +L DYP PP+ RF +++ + +E
Sbjct: 29 VDEGD---LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI-YE 84
Query: 61 TGVV 64
TG V
Sbjct: 85 TGDV 88
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
+D+GD + +W I GP NT +EG ++ +L DYP PP+ RF +++ + +E
Sbjct: 32 VDEGD---LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNI-YE 87
Query: 61 TGVV 64
TG V
Sbjct: 88 TGDV 91
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 6 DIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVE 65
D +R + TI GP + +E I++L+L+ DYP + P VRF ++I ++ +
Sbjct: 31 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRIC- 89
Query: 66 PKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L NW + +L ++ +A+P+
Sbjct: 90 --LDVLKTNWSPALQIRTVLLSIQALLASPN 118
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 6 DIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVE 65
D +R + TI GP + +E I++L+L+ DYP + P VRF ++I ++ +
Sbjct: 29 DDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRIC- 87
Query: 66 PKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
L NW + +L ++ +A+P+
Sbjct: 88 --LDVLKTNWSPALQIRTVLLSIQALLASPN 116
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 14 GTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 64
G I GP +T +EG YQL++ + YP PP VRF ++I ++ TG +
Sbjct: 45 GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 95
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 3 DGDDIYMRSWTGTIIGPHNTVH--EGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE 60
D D IY +W + P ++V+ G YQL + DYP +PP+VRF + + V E
Sbjct: 45 DTDTIY--NWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGE 102
Query: 61 TGVVE 65
G+ +
Sbjct: 103 GGICD 107
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 10 RSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
R + I GP T +EG Y+L+LF + YP +PP VRF ++I
Sbjct: 31 RHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKI 73
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 14 GTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 64
G I GP +T +EG YQL++ + YP PP VRF ++I ++ TG +
Sbjct: 94 GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 144
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 10 RSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
R + I GP T +EG Y+L+LF + YP +PP VRF ++I
Sbjct: 31 RHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKI 73
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 14 GTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 64
G I GP +T +EG YQL++ + YP PP VRF ++I ++ TG +
Sbjct: 43 GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 93
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 14 GTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 64
G I GP +T +EG YQL++ + YP PP VRF ++I ++ TG +
Sbjct: 42 GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 92
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 14 GTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 64
G I GP +T +EG YQL++ + YP PP VRF ++I ++ TG +
Sbjct: 58 GEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAI 108
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 9 MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF 48
+R W +G NT++ +Y+LK+ DYP KPP V F
Sbjct: 35 IRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYF 74
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 14 GTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLV 73
GT +GP T +EG + + + +YP KPP ++F +++ ++ TG + +L
Sbjct: 36 GTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAI---CLDILK 92
Query: 74 N-WQREYTMEDILTQLKKEMAAP 95
N W T++ L L+ + +P
Sbjct: 93 NAWSPVITLKSALISLQALLQSP 115
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
D+ R + I GP ++ EG ++L+LF ++YP P VRF ++I
Sbjct: 30 DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI 77
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
D+ R + I GP ++ EG ++L+LF ++YP P VRF ++I
Sbjct: 28 DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI 75
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
D+ R + I GP ++ EG ++L+LF ++YP P VRF ++I
Sbjct: 33 DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI 80
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The
P1 Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
Length = 155
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
D+ R + I GP ++ EG ++L+LF ++YP P VRF ++I
Sbjct: 31 DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI 78
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
D+ R + I GP ++ EG ++L+LF ++YP P VRF ++I
Sbjct: 26 DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI 73
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 14 GTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLV 73
GT +GP T +EG + + + +YP KPP ++F +++ ++ TG + +L
Sbjct: 37 GTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAI---CLDILR 93
Query: 74 N-WQREYTMEDILTQLKKEMAAP 95
N W T++ L L+ + +P
Sbjct: 94 NAWSPVITLKSALISLQALLQSP 116
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 9 MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETG------ 62
M W I G N+V +G ++QL + +Y PP V+F + V+ TG
Sbjct: 52 MMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDF 111
Query: 63 VVEPKKFGLLVNWQREYTMEDILTQLKKEMAAP 95
+ P+K W YT+ IL L+ ++ P
Sbjct: 112 LDNPEK------WNTNYTLSSILLALQVMLSNP 138
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 9 MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 68
+ +W I G T EG +++L++ DYP PP +F + V + +G V
Sbjct: 38 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVSLSI 96
Query: 69 FGLLVNWQREYTMEDILTQLKKEMAAPH 96
+W+ T++ IL +++ + P+
Sbjct: 97 LEEDKDWRPAITIKQILLGIQELLNEPN 124
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 15 TIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV--NHETGVVEPKKFGLL 72
TI GP T + G ++++KL KD+P PP F ++I V N E V K+
Sbjct: 48 TIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKR---- 103
Query: 73 VNWQREYTMEDILTQLKKEMAAPH 96
+W E + +L +K + P+
Sbjct: 104 -DWTAELGIRHVLLTIKCLLIHPN 126
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 9 MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 68
+ +W I G T EG +++L++ DYP PP +F + V + +G V
Sbjct: 38 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVXLSI 96
Query: 69 FGLLVNWQREYTMEDILTQLKKEMAAPH 96
+W+ T++ IL +++ + P+
Sbjct: 97 LEEDKDWRPAITIKQILLGIQELLNEPN 124
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
Length = 136
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 9 MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF 48
+R W +G NT++ +Y++K+ +YP KPP V F
Sbjct: 49 IRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYF 88
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 9 MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 68
+ +W I G T EG +++L++ DYP PP +F + V + +G V
Sbjct: 40 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSI 98
Query: 69 FGLLVNWQREYTMEDILTQLKKEMAAPH 96
+W+ T++ IL +++ + P+
Sbjct: 99 LEEDKDWRPAITIKQILLGIQELLNEPN 126
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 9 MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 68
+ +W I G T EG +++L++ DYP PP +F + V + +G V
Sbjct: 43 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSI 101
Query: 69 FGLLVNWQREYTMEDILTQLKKEMAAPH 96
+W+ T++ IL +++ + P+
Sbjct: 102 LEEDKDWRPAITIKQILLGIQELLNEPN 129
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 9 MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 68
+ +W I G T EG +++L++ DYP PP +F + V + +G V
Sbjct: 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSI 99
Query: 69 FGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQ 102
+W+ T++ IL +++ + P+ + Q
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQ 133
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 9 MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 68
+ +W I G T EG +++L++ DYP PP +F + V + +G V
Sbjct: 40 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSI 98
Query: 69 FGLLVNWQREYTMEDILTQLKKEMAAPH 96
+W+ T++ IL +++ + P+
Sbjct: 99 LEEDKDWRPAITIKQILLGIQELLNEPN 126
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 9 MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 68
+ +W I G T EG +++L++ DYP PP +F + V + +G V
Sbjct: 39 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSI 97
Query: 69 FGLLVNWQREYTMEDILTQLKKEMAAPH 96
+W+ T++ IL +++ + P+
Sbjct: 98 LEEDKDWRPAITIKQILLGIQELLNEPN 125
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 9 MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 68
+ +W I G T EG +++L++ DYP PP +F + V + +G V
Sbjct: 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSI 99
Query: 69 FGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQ 102
+W+ T++ IL +++ + P+ + Q
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEPNIQAPAQ 133
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 9 MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 68
+ +W I G T EG +++L++ DYP PP +F + V + +G V
Sbjct: 38 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSI 96
Query: 69 FGLLVNWQREYTMEDILTQLKKEMAAPH 96
+W+ T++ IL +++ + P+
Sbjct: 97 LEEDKDWRPAITIKQILLGIQELLNEPN 124
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 9 MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 68
+ +W I G T EG +++L++ DYP PP +F + V + +G V
Sbjct: 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-YPSGTVCLSI 99
Query: 69 FGLLVNWQREYTMEDILTQLKKEMAAPH 96
+W+ T++ IL +++ + P+
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEPN 127
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 9 MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 68
+ +W I G T EG +++L++ DYP PP +F + V + +G V
Sbjct: 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQV-YPSGTVCLSI 99
Query: 69 FGLLVNWQREYTMEDILTQLKKEMAAPH 96
+W+ T++ IL +++ + P+
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEPN 127
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 9 MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 68
+ +W I G T EG +++L++ DYP PP +F + V +G V
Sbjct: 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV-APSGTVCLSI 99
Query: 69 FGLLVNWQREYTMEDILTQLKKEMAAPH 96
+W+ T++ IL +++ + P+
Sbjct: 100 LEEDKDWRPAITIKQILLGIQELLNEPN 127
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGV- 63
D M I+G NT +E +++L++ + YP +PP +RF + I ++ +
Sbjct: 29 DKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRIC 88
Query: 64 VEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
++ K W+ + +LT ++ M+ P+
Sbjct: 89 LDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPN 121
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 15/99 (15%)
Query: 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF-----HSRINMTCV 57
+ D+++ W GTI G TV+E Y+L L YP P+V+F H ++ T
Sbjct: 55 ESDNLF--KWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVD-TQG 111
Query: 58 NHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
N +++ K W Y + IL ++ + P+
Sbjct: 112 NISLDILKEK-------WSALYDVRTILLSIQSLLGEPN 143
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 9 MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 68
++ W I G T G +Y + + +YP KPP V+F + V + +G +
Sbjct: 38 LQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNV-YPSGTICLSI 96
Query: 69 FGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
+W+ T++ I+ ++ + +P+ Q P F
Sbjct: 97 LNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSF 137
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 9 MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKK 68
++ W I G T G +Y + + +YP KPP V+F + V + +G +
Sbjct: 40 LQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNV-YPSGTICLSI 98
Query: 69 FGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109
+W+ T++ I+ ++ + +P+ Q P F
Sbjct: 99 LNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSF 139
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 18 GPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 64
GP+ T +EG I+++ + DYP PS+ F +++ V+ +G V
Sbjct: 37 GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSV 83
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 18 GPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 64
GP T +EG ++++++ YP K PS+ F ++I ++ +G V
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTV 105
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 12 WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF 48
W I+GP +T E ++ L DYP PP +RF
Sbjct: 42 WEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRF 78
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHET 61
D G D+ +W I G T EG +Y+L + ++YP +PP RF + V + +
Sbjct: 39 DGGLDLM--NWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNV-YPS 95
Query: 62 GVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPH 96
G V W+ T++ IL ++ + P+
Sbjct: 96 GTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPN 130
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br
Domain Of Gp78 At 1.8-A Resolution
Length = 164
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 12 WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF 48
W I+GP +T E ++ L DYP PP +RF
Sbjct: 36 WEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRF 72
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 12 WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF 48
W I+GP +T E ++ L DYP PP +RF
Sbjct: 39 WEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRF 75
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase
Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase
Gp78
Length = 168
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 12 WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF 48
W I+GP +T E ++ L DYP PP +RF
Sbjct: 40 WEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRF 76
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin
Ligase, Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin
Ligase, Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 64
D+ + +W G I+ P N ++ +++++ +YP KPP + F ++I ++ + V
Sbjct: 30 DEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVC 88
Query: 65 EP 66
P
Sbjct: 89 LP 90
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function
In Ubiquitin-Protein Ligases
Length = 154
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 64
D+ + +W G I+ P N ++ +++++ +YP KPP + F ++I ++ + V
Sbjct: 28 DEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVC 86
Query: 65 EP 66
P
Sbjct: 87 LP 88
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 12 WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
W I GP +T + ++ KL KDYP PP + F I
Sbjct: 37 WDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSI 77
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 12 WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSV 46
W + GP T +EG Y KL +++P KPPS+
Sbjct: 46 WHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSI 80
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC-VNHETG 62
D+ + W I GP +T +E +++ + YP PP + F + C V TG
Sbjct: 43 DETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATG 101
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC-VNHETG 62
D+ + W I GP +T +E +++ + YP PP + F + C V TG
Sbjct: 43 DETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATG 101
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 18 GPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQR 77
GP T +E + L + DYP K PS+ F +RI V+ +G V W
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVIN--QTWTP 103
Query: 78 EYTMEDIL 85
Y +E+I
Sbjct: 104 MYQLENIF 111
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF 48
D+ + W I GP +T +E +++ + YP PP + F
Sbjct: 43 DETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISF 86
>pdb|1NDR|A Chain A, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|B Chain B, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|C Chain C, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|A Chain A, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|B Chain B, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|C Chain C, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 330
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFH 49
DDG ++ G++ GP VHEG +L L + P +V FH
Sbjct: 44 DDGTTAQAMTFNGSVPGPTLVVHEGDYIELTL-VNPATNSMPHNVDFH 90
>pdb|2XX0|A Chain A, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
pdb|2XX0|B Chain B, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P SV FH
Sbjct: 48 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHSVDFHG 95
>pdb|2XXG|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
pdb|2XXG|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
Length = 336
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P SV FH
Sbjct: 48 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHSVDFHG 95
>pdb|2XX1|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|B Chain B, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|D Chain D, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|E Chain E, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|F Chain F, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P SV FH
Sbjct: 48 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHSVDFHG 95
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin
Complex
Length = 152
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
DD + W ++ P + + + L++ +YP KPP ++F ++I
Sbjct: 26 SDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKI 73
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52
DD + W ++ P + + + L++ +YP KPP ++F ++I
Sbjct: 28 SSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKI 76
>pdb|3IG8|A Chain A, Saccharomyces Cerevisiae Glutamate Cysteine Ligase In
Complex With Mg2+, L-Glutamate And Adp
pdb|3LVV|A Chain A, Bso-Inhibited Scgcl
pdb|3LVW|A Chain A, Glutathione-Inhibited Scgcl
Length = 692
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 20 HNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMT--CVNHETGVVEPKKFGLLVNWQR 77
H++ HE Y LKL D+ E P + +F + H++ + + + LL R
Sbjct: 585 HSSKHERLYYYLKLISDRASGELPTTAKFFRNFVLQHPDYKHDSKISKSINYDLLSTCDR 644
Query: 78 EYTMEDILTQLKKEMAA 94
++D +L + A
Sbjct: 645 LTHLDDSKGELTSFLGA 661
>pdb|3IG5|A Chain A, Saccharomyces Cerevisiae Glutamate Cysteine Ligase In
Complex With Mg2+ And L-Glutamate
Length = 692
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 20 HNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMT--CVNHETGVVEPKKFGLLVNWQR 77
H++ HE Y LKL D+ E P + +F + H++ + + + LL R
Sbjct: 585 HSSKHERLYYYLKLISDRASGELPTTAKFFRNFVLQHPDYKHDSKISKSINYDLLSTCDR 644
Query: 78 EYTMEDILTQLKKEMAA 94
++D +L + A
Sbjct: 645 LTHLDDSKGELTSFLGA 661
>pdb|1OE2|A Chain A, Atomic Resolution Structure Of D92e Mutant Of
Alcaligenes Xylosoxidans Nitrite Reductase
Length = 336
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P +V FH
Sbjct: 48 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHNVEFHG 95
>pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P +V FH
Sbjct: 48 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHNVNFHG 95
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 16 IIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
I GP +T + ++ ++ +DYP PP V +
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLET 150
>pdb|2VMJ|A Chain A, Type 1 Copper-Binding Loop Of Nitrite Reductase Mutant:
130- Capegmvpwhvvsgm-144 To 130-Ctphpfm-136
Length = 329
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P +V FH
Sbjct: 49 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHNVDFHG 96
>pdb|1WA0|X Chain X, Crystal Structure Of W138h Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P +V FH
Sbjct: 48 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHNVDFHG 95
>pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P +V FH
Sbjct: 48 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHNVDFHG 95
>pdb|2BO0|A Chain A, Crystal Structure Of The C130a Mutant Of Nitrite
Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P +V FH
Sbjct: 48 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHNVDFHG 95
>pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFH 49
D G + ++ G++ GP VHEG QL L + P +V FH
Sbjct: 48 DSGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHNVDFH 94
>pdb|2XXF|A Chain A, Cu Metallated H254f Mutant Of Nitrite Reductase
pdb|2XXF|B Chain B, Cu Metallated H254f Mutant Of Nitrite Reductase
Length = 336
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P +V FH
Sbjct: 48 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHNVDFHG 95
>pdb|1WA1|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
pdb|1WA2|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase With Nitrite Bound
Length = 336
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P +V FH
Sbjct: 48 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHNVDFHG 95
>pdb|1WAE|A Chain A, Crystal Structure Of H129v Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P +V FH
Sbjct: 48 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHNVDFHG 95
>pdb|1OE1|A Chain A, Atomic Resolution Structure Of The Wildtype Native
Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1OE3|A Chain A, Atomic Resolution Structure Of 'half Apo' Nir
Length = 336
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P +V FH
Sbjct: 48 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHNVDFHG 95
>pdb|2BP8|A Chain A, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P +V FH
Sbjct: 48 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHNVDFHG 95
>pdb|2BP8|B Chain B, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P +V FH
Sbjct: 48 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHNVDFHG 95
>pdb|2XWZ|A Chain A, Structure Of The Recombinant Native Nitrite Reductase
From Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|B Chain B, Structure Of The Recombinant Native Nitrite Reductase
From Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|C Chain C, Structure Of The Recombinant Native Nitrite Reductase
From Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|D Chain D, Structure Of The Recombinant Native Nitrite Reductase
From Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|E Chain E, Structure Of The Recombinant Native Nitrite Reductase
From Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|F Chain F, Structure Of The Recombinant Native Nitrite Reductase
From Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P +V FH
Sbjct: 48 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHNVDFHG 95
>pdb|2JFC|A Chain A, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|B Chain B, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|C Chain C, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|D Chain D, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|E Chain E, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|F Chain F, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
Length = 335
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P +V FH
Sbjct: 47 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHNVDFHG 94
>pdb|2BP0|A Chain A, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P +V FH
Sbjct: 48 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHNVDFHG 95
>pdb|2BP0|B Chain B, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P +V FH
Sbjct: 48 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHNVDFHG 95
>pdb|2VN3|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 337
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P +V FH
Sbjct: 49 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHNVDFHG 96
>pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P +V FH
Sbjct: 48 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHNVDFHG 95
>pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At
High Ph And In Copper Free Form At 1.9 A Resolution
pdb|1HAW|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At
High Ph And In Copper Free Form At 1.9a Resolution
pdb|2VM3|A Chain A, Structure Of Alcaligenes Xylosoxidans In Space Group R3
- 1 Of 2
pdb|2VM4|A Chain A, Structure Of Alcaligenes Xylosoxidans Nitrite Reductase
In Space Group R3 - 2 Of 2
pdb|2VW4|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW4|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW6|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW6|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW7|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2VW7|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2ZON|A Chain A, Crystal Structure Of Electron Transfer Complex Of
Nitrite Reductase With Cytochrome C
pdb|2ZON|B Chain B, Crystal Structure Of Electron Transfer Complex Of
Nitrite Reductase With Cytochrome C
pdb|2ZON|C Chain C, Crystal Structure Of Electron Transfer Complex Of
Nitrite Reductase With Cytochrome C
Length = 336
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P +V FH
Sbjct: 48 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHNVDFHG 95
>pdb|1BQ5|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans Gifu 1051
Length = 342
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50
D G + ++ G++ GP VHEG QL L + P +V FH
Sbjct: 54 DKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTL-VNPATNAMPHNVDFHG 101
>pdb|1N70|A Chain A, The Crystal Structure Of Nitrite Reductase Mutant
His287ala From Rhodobacter Sphaeroides
Length = 334
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 5 DDIYMRSWT--GTIIGPHNTVHEGRIYQLKLFCDKDYPEK--PPSVRFH 49
+D Y+++ T G+I GP VHEG +L L + PE P ++ FH
Sbjct: 46 EDAYLQAMTFDGSIPGPLMIVHEGDYVELTLI---NPPENTMPHNIDFH 91
>pdb|1MZY|A Chain A, Crystal Structure Of Nitrite Reductase
Length = 333
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 5 DDIYMRSWT--GTIIGPHNTVHEGRIYQLKLFCDKDYPEK--PPSVRFH 49
+D Y+++ T G+I GP VHEG +L L + PE P ++ FH
Sbjct: 48 EDAYLQAMTFDGSIPGPLMIVHEGDYVELTLI---NPPENTMPHNIDFH 93
>pdb|1MZZ|A Chain A, Crystal Structure Of Mutant (M182t)of Nitrite Reductase
pdb|1MZZ|B Chain B, Crystal Structure Of Mutant (M182t)of Nitrite Reductase
pdb|1MZZ|C Chain C, Crystal Structure Of Mutant (M182t)of Nitrite Reductase
Length = 334
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 5 DDIYMRSWT--GTIIGPHNTVHEGRIYQLKLFCDKDYPEK--PPSVRFH 49
+D Y+++ T G+I GP VHEG +L L + PE P ++ FH
Sbjct: 48 EDAYLQAMTFDGSIPGPLMIVHEGDYVELTLI---NPPENTMPHNIDFH 93
>pdb|1ZV2|A Chain A, Cu-Containing Nitrite Reductase
pdb|2A3T|A Chain A, Cu-containing Nitrite Reductase
pdb|2DWS|A Chain A, Cu-containing Nitrite Reductase At Ph 8.4 With Bound
Nitrite
Length = 328
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 5 DDIYMRSWT--GTIIGPHNTVHEGRIYQLKLFCDKDYPEK--PPSVRFH 49
+D Y+++ T G+I GP VHEG +L L + PE P ++ FH
Sbjct: 43 EDAYLQAMTFDGSIPGPLMIVHEGDYVELTLI---NPPENTMPHNIDFH 88
>pdb|2DWT|A Chain A, Cu-Containing Nitrite Reductase At Ph 6.0 With Bound
Nitrite
pdb|2DY2|A Chain A, Nitrite Reductase Ph 6.0
Length = 329
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 5 DDIYMRSWT--GTIIGPHNTVHEGRIYQLKLFCDKDYPEK--PPSVRFH 49
+D Y+++ T G+I GP VHEG +L L + PE P ++ FH
Sbjct: 43 EDAYLQAMTFDGSIPGPLMIVHEGDYVELTLI---NPPENTMPHNIDFH 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,847,148
Number of Sequences: 62578
Number of extensions: 148348
Number of successful extensions: 476
Number of sequences better than 100.0: 146
Number of HSP's better than 100.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 146
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)