Query 033897
Match_columns 109
No_of_seqs 104 out of 1147
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 07:32:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 7.6E-44 1.7E-48 238.4 7.2 103 2-109 25-127 (148)
2 COG5078 Ubiquitin-protein liga 100.0 3.4E-43 7.4E-48 238.9 7.8 101 4-109 32-132 (153)
3 KOG0419 Ubiquitin-protein liga 100.0 3.9E-40 8.4E-45 216.2 6.7 103 2-109 28-130 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 2.1E-39 4.5E-44 221.2 7.6 102 3-109 27-128 (152)
5 PLN00172 ubiquitin conjugating 100.0 3.2E-39 7E-44 219.1 7.5 102 3-109 26-127 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 6E-39 1.3E-43 215.8 7.6 106 1-109 29-145 (171)
7 KOG0424 Ubiquitin-protein liga 100.0 1.5E-38 3.3E-43 211.2 7.4 102 5-109 36-137 (158)
8 KOG0421 Ubiquitin-protein liga 100.0 5.9E-37 1.3E-41 204.0 4.7 103 1-108 52-154 (175)
9 KOG0418 Ubiquitin-protein liga 100.0 3.4E-36 7.5E-41 207.6 5.0 99 5-107 33-131 (200)
10 PF00179 UQ_con: Ubiquitin-con 100.0 1.7E-35 3.7E-40 198.7 5.3 100 5-108 25-124 (140)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 2.4E-34 5.1E-39 193.5 7.3 103 3-109 24-126 (141)
12 smart00212 UBCc Ubiquitin-conj 100.0 1.6E-33 3.4E-38 190.2 7.6 101 5-109 26-126 (145)
13 KOG0426 Ubiquitin-protein liga 100.0 4.7E-32 1E-36 178.4 7.0 102 3-107 30-142 (165)
14 KOG0416 Ubiquitin-protein liga 100.0 4.5E-32 9.7E-37 184.8 5.4 101 5-109 27-128 (189)
15 KOG0422 Ubiquitin-protein liga 100.0 1.9E-30 4.1E-35 171.8 7.4 102 3-109 28-129 (153)
16 KOG0420 Ubiquitin-protein liga 100.0 3.8E-30 8.3E-35 175.5 4.7 101 4-108 54-154 (184)
17 KOG0423 Ubiquitin-protein liga 99.9 1.2E-27 2.7E-32 163.8 -0.4 102 2-108 34-135 (223)
18 KOG0427 Ubiquitin conjugating 99.9 1.8E-25 3.9E-30 147.1 8.5 87 4-95 40-127 (161)
19 KOG0894 Ubiquitin-protein liga 99.9 1.2E-22 2.5E-27 143.3 9.8 89 2-96 29-119 (244)
20 KOG0896 Ubiquitin-conjugating 99.9 6.5E-22 1.4E-26 130.4 7.8 109 1-109 30-138 (138)
21 KOG0428 Non-canonical ubiquiti 99.8 1.1E-19 2.3E-24 130.7 7.7 86 3-94 35-122 (314)
22 KOG0895 Ubiquitin-conjugating 99.6 1.3E-16 2.9E-21 132.0 4.2 81 12-93 883-970 (1101)
23 KOG0429 Ubiquitin-conjugating 99.6 1.3E-15 2.9E-20 108.1 5.4 102 3-109 44-150 (258)
24 KOG0895 Ubiquitin-conjugating 99.4 6.4E-13 1.4E-17 110.5 9.3 90 3-95 307-405 (1101)
25 KOG0897 Predicted ubiquitin-co 98.8 3.4E-09 7.3E-14 68.6 3.0 68 29-97 13-80 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.5 2E-07 4.3E-12 62.2 4.8 67 25-94 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.2 1.5E-06 3.2E-11 57.3 3.1 68 23-94 42-117 (121)
28 KOG2391 Vacuolar sorting prote 97.2 0.0013 2.7E-08 50.2 5.9 76 18-97 57-140 (365)
29 PF14462 Prok-E2_E: Prokaryoti 96.0 0.09 2E-06 34.7 8.0 75 16-93 29-120 (122)
30 PF14457 Prok-E2_A: Prokaryoti 95.5 0.032 6.9E-07 38.5 4.6 62 31-94 57-126 (162)
31 PF08694 UFC1: Ubiquitin-fold 95.0 0.036 7.8E-07 37.6 3.7 66 17-84 55-134 (161)
32 PF05773 RWD: RWD domain; Int 94.7 0.074 1.6E-06 33.3 4.3 41 11-51 31-73 (113)
33 smart00591 RWD domain in RING 93.8 0.23 5.1E-06 30.7 5.3 27 25-51 39-65 (107)
34 PF06113 BRE: Brain and reprod 80.6 13 0.00029 28.6 7.5 60 23-91 61-123 (333)
35 KOG3357 Uncharacterized conser 75.3 6.3 0.00014 26.5 4.0 57 11-68 52-119 (167)
36 KOG4018 Uncharacterized conser 63.4 7.1 0.00015 28.2 2.4 22 28-49 50-71 (215)
37 KOG0177 20S proteasome, regula 62.3 2.7 5.8E-05 29.9 0.1 42 61-104 135-176 (200)
38 KOG0309 Conserved WD40 repeat- 62.1 17 0.00038 31.3 4.8 38 13-51 452-491 (1081)
39 PF03366 YEATS: YEATS family; 61.2 31 0.00067 21.1 4.7 40 10-51 2-41 (84)
40 cd00421 intradiol_dioxygenase 56.1 13 0.00029 24.8 2.7 25 26-50 65-90 (146)
41 PF14460 Prok-E2_D: Prokaryoti 55.4 36 0.00078 23.5 4.8 22 48-70 88-112 (175)
42 cd03457 intradiol_dioxygenase_ 55.1 14 0.0003 26.1 2.7 26 25-50 85-110 (188)
43 cd03459 3,4-PCD Protocatechuat 48.3 21 0.00045 24.4 2.7 25 26-50 72-101 (158)
44 PF09765 WD-3: WD-repeat regio 47.6 6.4 0.00014 29.6 0.1 50 27-93 137-187 (291)
45 TIGR03737 PRTRC_B PRTRC system 42.3 68 0.0015 23.4 4.7 38 49-93 130-171 (228)
46 KOG1047 Bifunctional leukotrie 40.7 25 0.00053 29.2 2.4 30 22-52 248-280 (613)
47 PF06113 BRE: Brain and reprod 40.2 29 0.00063 26.8 2.6 24 27-50 306-329 (333)
48 PF04881 Adeno_GP19K: Adenovir 39.5 37 0.0008 22.8 2.7 29 5-35 45-74 (139)
49 KOG4445 Uncharacterized conser 34.6 39 0.00085 26.0 2.5 25 27-51 45-69 (368)
50 TIGR02423 protocat_alph protoc 33.0 47 0.001 23.5 2.6 25 26-50 96-125 (193)
51 PF00845 Gemini_BL1: Geminivir 32.1 88 0.0019 23.3 3.9 43 11-53 104-154 (276)
52 cd03463 3,4-PCD_alpha Protocat 31.9 51 0.0011 23.1 2.6 25 26-50 92-121 (185)
53 PF13950 Epimerase_Csub: UDP-g 30.5 39 0.00083 19.3 1.5 18 73-90 36-53 (62)
54 KOG0662 Cyclin-dependent kinas 28.2 52 0.0011 23.9 2.1 57 41-99 167-226 (292)
55 PF14455 Metal_CEHH: Predicted 27.9 1.2E+02 0.0025 21.1 3.7 22 29-51 55-76 (177)
56 KOG3203 Mitochondrial/chloropl 26.1 38 0.00082 23.4 1.1 15 50-66 49-63 (165)
57 COG3866 PelB Pectate lyase [Ca 25.4 1.1E+02 0.0023 23.7 3.5 39 11-50 198-240 (345)
58 TIGR02439 catechol_proteo cate 24.6 79 0.0017 23.8 2.7 25 26-50 180-222 (285)
59 PF09943 DUF2175: Uncharacteri 23.9 82 0.0018 20.1 2.3 21 10-32 1-21 (101)
60 cd03461 1,2-HQD Hydroxyquinol 22.0 95 0.0021 23.3 2.7 25 26-50 172-214 (277)
61 PHA00458 single-stranded DNA-b 21.3 41 0.0009 24.6 0.6 30 23-52 33-62 (233)
62 cd03460 1,2-CTD Catechol 1,2 d 20.2 1.1E+02 0.0024 23.1 2.7 25 26-50 176-218 (282)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-44 Score=238.37 Aligned_cols=103 Identities=25% Similarity=0.563 Sum_probs=98.8
Q ss_pred CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCH
Q 033897 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM 81 (109)
Q Consensus 2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l 81 (109)
++++|++ +|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||+. .|+||+++|. +.|+|+++|
T Consensus 25 ~~~dnl~--~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~-~G~IclDILk--~~WsPAl~i 99 (148)
T KOG0417|consen 25 PVGDNLF--HWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS-NGRICLDILK--DQWSPALTI 99 (148)
T ss_pred CCCCcee--eEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc-cccchHHhhh--ccCChhhHH
Confidence 3689999 9999999999999999999999999999999999999999999999996 9999999998 889999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 82 EDILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 82 ~~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+.||++|++||.+||+++|+++++|..|
T Consensus 100 ~~VllsI~sLL~~PnpddPL~~~ia~~~ 127 (148)
T KOG0417|consen 100 SKVLLSICSLLSDPNPDDPLVPDIAELY 127 (148)
T ss_pred HHHHHHHHHHhcCCCCCccccHHHHHHH
Confidence 9999999999999999999999998654
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-43 Score=238.86 Aligned_cols=101 Identities=34% Similarity=0.614 Sum_probs=97.0
Q ss_pred CCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHH
Q 033897 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED 83 (109)
Q Consensus 4 ~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~ 83 (109)
++|++ .|+++|.||.+||||||+|++.|.||++||++||+|+|.++|||||||. +|+||+++|. ++|+|+++|++
T Consensus 32 d~~l~--~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~-~G~vCLdIL~--~~WsP~~~l~s 106 (153)
T COG5078 32 DDNLF--HWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP-SGNVCLDILK--DRWSPVYTLET 106 (153)
T ss_pred CCcce--eEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC-CCCChhHHHh--CCCCccccHHH
Confidence 34888 9999999999999999999999999999999999999999999999996 9999999998 99999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 84 ILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 84 il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
||++|++||.+||.++|+|.+||+.|
T Consensus 107 ILlsl~slL~~PN~~~Pln~daa~~~ 132 (153)
T COG5078 107 ILLSLQSLLLSPNPDSPLNTEAATLY 132 (153)
T ss_pred HHHHHHHHHcCCCCCCCCChHHHHHH
Confidence 99999999999999999999998754
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-40 Score=216.19 Aligned_cols=103 Identities=27% Similarity=0.549 Sum_probs=99.2
Q ss_pred CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCH
Q 033897 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM 81 (109)
Q Consensus 2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l 81 (109)
+-++|++ .|.++|+||.+|||+||+|++.|.|+++||.+||.|+|+++.||||||. +|.+|+++|. ..|+|.|++
T Consensus 28 P~~~niM--~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya-~G~iClDiLq--NrWsp~Ydv 102 (152)
T KOG0419|consen 28 PVENNIM--EWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYA-DGSICLDILQ--NRWSPTYDV 102 (152)
T ss_pred CCcccee--eeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCC-CCcchHHHHh--cCCCCchhH
Confidence 3468999 9999999999999999999999999999999999999999999999998 8999999997 899999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 82 EDILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 82 ~~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
..||++||+||.+|++.+|+|.+||+.|
T Consensus 103 a~ILtsiQslL~dPn~~sPaN~eAA~Lf 130 (152)
T KOG0419|consen 103 ASILTSIQSLLNDPNPNSPANSEAARLF 130 (152)
T ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHH
Confidence 9999999999999999999999999765
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=2.1e-39 Score=221.16 Aligned_cols=102 Identities=24% Similarity=0.459 Sum_probs=97.8
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. ++|+|++|++
T Consensus 27 ~~~d~~--~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~-~G~iCl~iL~--~~W~p~~ti~ 101 (152)
T PTZ00390 27 DPGNYR--HFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK-LGRICLDILK--DKWSPALQIR 101 (152)
T ss_pred CCCCcc--EEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECC-CCeEECccCc--ccCCCCCcHH
Confidence 467888 9999999999999999999999999999999999999999999999997 8999999997 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|+++|.+|++++|+|.+||++|
T Consensus 102 ~iL~~i~~ll~~P~~~~pln~~aa~~~ 128 (152)
T PTZ00390 102 TVLLSIQALLSAPEPDDPLDTSVADHF 128 (152)
T ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 999999999999999999999998764
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=3.2e-39 Score=219.13 Aligned_cols=102 Identities=25% Similarity=0.569 Sum_probs=97.8
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+. +|.||+++|. ++|+|++|++
T Consensus 26 ~~~nl~--~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~-~G~iCl~il~--~~W~p~~ti~ 100 (147)
T PLN00172 26 SDENLF--RWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS-NGSICLDILR--DQWSPALTVS 100 (147)
T ss_pred CCCChh--eEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC-CCEEEcccCc--CCCCCcCcHH
Confidence 467888 9999999999999999999999999999999999999999999999997 9999999997 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|+++|.+|++++|+|++||+.|
T Consensus 101 ~il~~i~~ll~~P~~~~p~n~~aa~~~ 127 (147)
T PLN00172 101 KVLLSISSLLTDPNPDDPLVPEIARVF 127 (147)
T ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 999999999999999999999998754
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-39 Score=215.79 Aligned_cols=106 Identities=26% Similarity=0.469 Sum_probs=100.5
Q ss_pred CCCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCC---------
Q 033897 1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL--------- 71 (109)
Q Consensus 1 ~~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~--------- 71 (109)
|.|+.|++ +|.+.|.||++|.||||.|+..+.||.+||.+||+++|.+++||||||+ +|.+|+++|..
T Consensus 29 lvd~~dif--~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~-~G~vCISILH~pgdD~~gyE 105 (171)
T KOG0425|consen 29 LVDDSDIF--EWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE-DGDVCISILHPPGDDPSGYE 105 (171)
T ss_pred cccCCcee--EEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC-CCCEEEEeecCCCCCcccCC
Confidence 46889999 9999999999999999999999999999999999999999999999998 99999999972
Q ss_pred --CCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 72 --LVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 72 --~~~W~p~~~l~~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
.+.|+|..|+++||++|.+||.+||.++|+|.+||.+|
T Consensus 106 ~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~ 145 (171)
T KOG0425|consen 106 LPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEW 145 (171)
T ss_pred ChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHH
Confidence 26899999999999999999999999999999998764
No 7
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-38 Score=211.24 Aligned_cols=102 Identities=24% Similarity=0.425 Sum_probs=96.4
Q ss_pred CCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHHH
Q 033897 5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDI 84 (109)
Q Consensus 5 ~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~i 84 (109)
.|++ +|+|.|.|++||+||||.|.+++.||++||.+||+++|.+++||||||+ +|.||+++|+...+|+|+.||.+|
T Consensus 36 ~nl~--~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVyp-sgtVcLsiL~e~~~W~paitikqi 112 (158)
T KOG0424|consen 36 LNLM--NWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYP-SGTVCLSILNEEKDWRPAITIKQI 112 (158)
T ss_pred ceeE--EEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCC-CCcEehhhhccccCCCchhhHHHH
Confidence 4566 9999999999999999999999999999999999999999999999999 999999999954569999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 85 LTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 85 l~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
|.+||+||.+||..+|+|.||+..|
T Consensus 113 L~gIqdLL~~Pn~~~pAq~eA~~~~ 137 (158)
T KOG0424|consen 113 LLGIQDLLDTPNITSPAQTEAYTIY 137 (158)
T ss_pred HHHHHHHhcCCCCCCchhhHHHHHH
Confidence 9999999999999999999998654
No 8
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-37 Score=203.96 Aligned_cols=103 Identities=28% Similarity=0.573 Sum_probs=99.2
Q ss_pred CCCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCC
Q 033897 1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYT 80 (109)
Q Consensus 1 ~~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~ 80 (109)
++++||++ .|..+|.||++|+|+|-.|++.+.||.+||+.||.|+|.|+.||||||. .|.||+++|. +.|+..++
T Consensus 52 FP~~dnlf--~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~-~GnIcLDILk--dKWSa~Yd 126 (175)
T KOG0421|consen 52 FPESDNLF--KWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDL-SGNICLDILK--DKWSAVYD 126 (175)
T ss_pred CcCcCcee--EEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccc-cccchHHHHH--HHHHHHHh
Confidence 57889999 9999999999999999999999999999999999999999999999998 9999999997 99999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897 81 MEDILTQLKKEMAAPHNRKLVQPPEGTY 108 (109)
Q Consensus 81 l~~il~~i~~ll~~p~~~~~~~~~a~~~ 108 (109)
++.||++||+||-+||.++|+|.-||+.
T Consensus 127 VrTILLSiQSLLGEPNn~SPLNaqAAel 154 (175)
T KOG0421|consen 127 VRTILLSIQSLLGEPNNSSPLNAQAAEL 154 (175)
T ss_pred HHHHHHHHHHHhCCCCCCCcchhHHHHH
Confidence 9999999999999999999999888753
No 9
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-36 Score=207.62 Aligned_cols=99 Identities=25% Similarity=0.487 Sum_probs=92.4
Q ss_pred CCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHHH
Q 033897 5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDI 84 (109)
Q Consensus 5 ~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~i 84 (109)
+|+. +.++.|.||+|||||||.|.++|++|++|||+||+|+|.|+||||||.+.+|.||+++|. +.|++++||+.+
T Consensus 33 ~~~~--~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDilk--d~Wa~slTlrtv 108 (200)
T KOG0418|consen 33 ENLK--EIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGAICLDILK--DQWAASLTLRTV 108 (200)
T ss_pred CChh--hceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCcccccchhhhhh--cccchhhhHHHH
Confidence 4555 889999999999999999999999999999999999999999999999989999999998 999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCC
Q 033897 85 LTQLKKEMAAPHNRKLVQPPEGT 107 (109)
Q Consensus 85 l~~i~~ll~~p~~~~~~~~~a~~ 107 (109)
|++||++|.+|++++|+...-++
T Consensus 109 LislQalL~~pEp~dPqDavva~ 131 (200)
T KOG0418|consen 109 LISLQALLCAPEPKDPQDAVVAE 131 (200)
T ss_pred HHHHHHHHcCCCCCChHHHHHHH
Confidence 99999999999999997654443
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=1.7e-35 Score=198.72 Aligned_cols=100 Identities=27% Similarity=0.562 Sum_probs=89.6
Q ss_pred CCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHHH
Q 033897 5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDI 84 (109)
Q Consensus 5 ~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~i 84 (109)
+|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||+. +|.||+++|. .+.|+|++++.++
T Consensus 25 ~~~~--~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~-~G~icl~~l~-~~~W~p~~~i~~i 100 (140)
T PF00179_consen 25 DNLF--EWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDE-NGRICLDILN-PESWSPSYTIESI 100 (140)
T ss_dssp TETT--EEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-T-TSBBGHGGGT-TTTC-TTSHHHHH
T ss_pred CChh--eEEEEEeccCccceecccccccccccccccccccccccccccccccccc-cccchhhhhh-cccCCcccccccH
Confidence 4888 9999999999999999999999999999999999999999999999996 9999999997 3469999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCC
Q 033897 85 LTQLKKEMAAPHNRKLVQPPEGTY 108 (109)
Q Consensus 85 l~~i~~ll~~p~~~~~~~~~a~~~ 108 (109)
|.+|+++|.+|+.++++|.+|++.
T Consensus 101 l~~i~~ll~~p~~~~~~n~~a~~~ 124 (140)
T PF00179_consen 101 LLSIQSLLSEPNPEDPLNEEAAEL 124 (140)
T ss_dssp HHHHHHHHHSTCTTSTSSHHHHHH
T ss_pred HHHHHHHHhCCCCCCcchHHHHHH
Confidence 999999999999999999988754
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=2.4e-34 Score=193.46 Aligned_cols=103 Identities=28% Similarity=0.565 Sum_probs=96.3
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|+|+||.|+++|.||++||++||+|+|.++++||||+. +|.||+++|. ..+|+|+++++
T Consensus 24 ~~~~~~--~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~-~G~icl~~l~-~~~W~p~~~l~ 99 (141)
T cd00195 24 VEENLL--EWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDE-NGKICLSILK-THGWSPAYTLR 99 (141)
T ss_pred CCCChh--EEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCC-CCCCchhhcC-CCCcCCcCcHH
Confidence 456888 9999999999999999999999999999999999999999999999996 9999999997 23499999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||.+|+++|.+|+.++++|.+|+++|
T Consensus 100 ~il~~i~~~l~~p~~~~~~n~~aa~~~ 126 (141)
T cd00195 100 TVLLSLQSLLNEPNPSDPLNAEAAKLY 126 (141)
T ss_pred HHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence 999999999999999999999998754
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1.6e-33 Score=190.21 Aligned_cols=101 Identities=30% Similarity=0.590 Sum_probs=96.1
Q ss_pred CCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHHH
Q 033897 5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDI 84 (109)
Q Consensus 5 ~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~i 84 (109)
+|++ +|+++|.||++|+|+||.|+++|.||++||++||+|+|.++++||||++ +|.+|++.|. .++|+|+++++++
T Consensus 26 ~~~~--~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~-~G~icl~~l~-~~~W~p~~~l~~i 101 (145)
T smart00212 26 DNLL--EWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDS-SGEICLDILK-QEKWSPATTLETV 101 (145)
T ss_pred CChh--eEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECC-CCCEehhhcC-CCCCCCCCcHHHH
Confidence 4888 9999999999999999999999999999999999999999999999998 9999999985 3689999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 85 LTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 85 l~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
|.+|+++|.+|+.++++|++|+++|
T Consensus 102 l~~i~~~l~~p~~~~~~n~eaa~~~ 126 (145)
T smart00212 102 LLSIQSLLSEPNPDSPLNADAATLY 126 (145)
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHH
Confidence 9999999999999999999998764
No 13
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.7e-32 Score=178.38 Aligned_cols=102 Identities=24% Similarity=0.439 Sum_probs=96.8
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCC-----------
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL----------- 71 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~----------- 71 (109)
+++|.| .|.|.|.||++|+|+||.|..++.||.+||.+||+++|...++||||++ +|++|+++|-.
T Consensus 30 ~EdnfF--~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~-dG~VCISILHaPGDDP~~YEls 106 (165)
T KOG0426|consen 30 NEDNFF--EWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYELS 106 (165)
T ss_pred Ccccee--eeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcccC-CCeEEEEEeeCCCCCCccchhh
Confidence 578999 9999999999999999999999999999999999999999999999998 99999999862
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 033897 72 LVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGT 107 (109)
Q Consensus 72 ~~~W~p~~~l~~il~~i~~ll~~p~~~~~~~~~a~~ 107 (109)
.+.|+|..+++.||+++-++|++||.++.+|.+|..
T Consensus 107 ~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~ 142 (165)
T KOG0426|consen 107 AERWSPVQSVEKILLSVVSMLAEPNDESGANVDACK 142 (165)
T ss_pred hhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHH
Confidence 278999999999999999999999999999988764
No 14
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.5e-32 Score=184.76 Aligned_cols=101 Identities=19% Similarity=0.411 Sum_probs=94.7
Q ss_pred CCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHHH
Q 033897 5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDI 84 (109)
Q Consensus 5 ~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~i 84 (109)
+++. +++|.+.||++||||||+++++|.+|++||++.|+|.|.++||||||+..+|.||++.++ +.|+|.+.+..|
T Consensus 27 d~m~--ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViN--QtWSp~yDL~NI 102 (189)
T KOG0416|consen 27 DGMQ--EFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVIN--QTWSPLYDLVNI 102 (189)
T ss_pred Cccc--EEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHh--hhhhHHHHHHHH
Confidence 4466 999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred HHH-HHHHhcCCCCCCCCCCCCCCCC
Q 033897 85 LTQ-LKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 85 l~~-i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+.. |-.||..||+.+|+|-+||+.|
T Consensus 103 fetfLPQLL~YPNp~DPLN~eAAal~ 128 (189)
T KOG0416|consen 103 FETFLPQLLRYPNPSDPLNGEAAALY 128 (189)
T ss_pred HHHHhHHHhcCCCCCCCcccHHHHHH
Confidence 865 6788999999999999998753
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-30 Score=171.78 Aligned_cols=102 Identities=23% Similarity=0.445 Sum_probs=97.4
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
|+.|++ .|++.+. |.+-||..|.|+++|.||.+|||+||+|+|.|+|||||||+ .|.+|+.++. .++|+|++...
T Consensus 28 ~e~nll--~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe-~gqvClPiis-~EnWkP~T~te 102 (153)
T KOG0422|consen 28 DEANLL--KWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE-KGQVCLPIIS-AENWKPATRTE 102 (153)
T ss_pred ccccce--eEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC-CCceeeeeee-cccccCcccHH
Confidence 678888 9999999 79999999999999999999999999999999999999998 7999999997 69999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
++|+++..++.+|+++.|.+.++|.+|
T Consensus 103 qVlqaLi~liN~P~pe~plr~dlA~ey 129 (153)
T KOG0422|consen 103 QVLQALIALINDPEPEHPLRIDLAEEY 129 (153)
T ss_pred HHHHHHHHHhcCCCccccchhhHHHHH
Confidence 999999999999999999999998765
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.8e-30 Score=175.50 Aligned_cols=101 Identities=18% Similarity=0.344 Sum_probs=93.7
Q ss_pred CCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHH
Q 033897 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED 83 (109)
Q Consensus 4 ~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~ 83 (109)
.+|++..+.+++|. |.++.|+||.|.|.+.+|+.||++||+|+|+|+|||||||. .|.||+++|. ++|+|..+|.+
T Consensus 54 ~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~-~GnVCLnILR--edW~P~lnL~s 129 (184)
T KOG0420|consen 54 PDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDL-DGNVCLNILR--EDWRPVLNLNS 129 (184)
T ss_pred CcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCC-cchHHHHHHH--hcCccccchHH
Confidence 34555225888888 99999999999999999999999999999999999999998 9999999998 99999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897 84 ILTQLKKEMAAPHNRKLVQPPEGTY 108 (109)
Q Consensus 84 il~~i~~ll~~p~~~~~~~~~a~~~ 108 (109)
|+-+++.|+.+|++++|+|-+||+.
T Consensus 130 Ii~GL~~LF~epn~eDpLN~eAA~~ 154 (184)
T KOG0420|consen 130 IIYGLQFLFLEPNPEDPLNKEAAAV 154 (184)
T ss_pred HHHHHHHHhccCCCcccccHHHHHH
Confidence 9999999999999999999999864
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.2e-27 Score=163.78 Aligned_cols=102 Identities=21% Similarity=0.388 Sum_probs=95.9
Q ss_pred CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCH
Q 033897 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM 81 (109)
Q Consensus 2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l 81 (109)
.+++|+. ...+.|.||.||||++|+|++++.+..+||.+||+-.|+|+||||||-. +|.||.+.|. ..|+|++.|
T Consensus 34 ~NeeD~t--diqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaa-NGEICVNtLK--kDW~p~LGi 108 (223)
T KOG0423|consen 34 VNEEDFT--DIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAA-NGEICVNTLK--KDWNPSLGI 108 (223)
T ss_pred cChHHhH--HHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCccc-Cceehhhhhh--cccCcccch
Confidence 4566776 8889999999999999999999999999999999999999999999997 9999999997 999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897 82 EDILTQLKKEMAAPHNRKLVQPPEGTY 108 (109)
Q Consensus 82 ~~il~~i~~ll~~p~~~~~~~~~a~~~ 108 (109)
+-||+.|++||..|++++.+|-+|+.+
T Consensus 109 rHvLltikCLLI~PnPESALNEeAGkm 135 (223)
T KOG0423|consen 109 RHVLLTIKCLLIEPNPESALNEEAGKM 135 (223)
T ss_pred hhHhhhhheeeecCChHHHHhHHHHHH
Confidence 999999999999999999999888753
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.8e-25 Score=147.09 Aligned_cols=87 Identities=16% Similarity=0.330 Sum_probs=82.7
Q ss_pred CCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCcccccccc-ccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI-NMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 4 ~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
.+|+. +|.+.+.|.+||.|+|.+|++.++||+.||++.|.|.|..++ .||+||. +|.||+++|. +.|+|++++.
T Consensus 40 ~dnlq--qWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYS-NGHICL~iL~--d~WsPAmsv~ 114 (161)
T KOG0427|consen 40 TDNLQ--QWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYS-NGHICLDILY--DSWSPAMSVQ 114 (161)
T ss_pred ccchh--eeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceec-CCeEEEEeec--ccCCcchhhH
Confidence 36777 999999999999999999999999999999999999999887 8999997 9999999998 9999999999
Q ss_pred HHHHHHHHHhcCC
Q 033897 83 DILTQLKKEMAAP 95 (109)
Q Consensus 83 ~il~~i~~ll~~p 95 (109)
+|.++|.+||++-
T Consensus 115 SvClSIlSMLSSs 127 (161)
T KOG0427|consen 115 SVCLSILSMLSSS 127 (161)
T ss_pred HHHHHHHHHHccC
Confidence 9999999999863
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.2e-22 Score=143.30 Aligned_cols=89 Identities=22% Similarity=0.361 Sum_probs=78.9
Q ss_pred CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCC-CCCCCeeeccCCCC-CCCCCCCC
Q 033897 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV-NHETGVVEPKKFGL-LVNWQREY 79 (109)
Q Consensus 2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv-~~~~g~ic~~~l~~-~~~W~p~~ 79 (109)
+.++||. +||.+|.||++|||+||.|+.+|.||++||++||.|+.+| ||- ...+-++|+++-+- .+.|+|.|
T Consensus 29 P~p~nIL--EWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiT----PNGRFktntRLCLSiSDfHPdsWNP~W 102 (244)
T KOG0894|consen 29 PNPNNIL--EWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMIT----PNGRFKTNTRLCLSISDFHPDSWNPGW 102 (244)
T ss_pred CCcccee--eeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEEC----CCCceecCceEEEeccccCcCcCCCcc
Confidence 4578999 9999999999999999999999999999999999999999 553 22267899999873 38999999
Q ss_pred CHHHHHHHHHHHhcCCC
Q 033897 80 TMEDILTQLKKEMAAPH 96 (109)
Q Consensus 80 ~l~~il~~i~~ll~~p~ 96 (109)
++++||.++.++|.+..
T Consensus 103 sVStILtGLlSFM~e~~ 119 (244)
T KOG0894|consen 103 SVSTILTGLLSFMTEDS 119 (244)
T ss_pred cHHHHHHHHHHHHhcCC
Confidence 99999999999998643
No 20
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=6.5e-22 Score=130.39 Aligned_cols=109 Identities=52% Similarity=0.977 Sum_probs=101.5
Q ss_pred CCCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCC
Q 033897 1 MDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYT 80 (109)
Q Consensus 1 ~~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~ 80 (109)
++|++|+.|++|..+|.||+.|+||+.+|.++|...++||..||+|+|.+++.-..|+..+|.+.-..+....+|+.+++
T Consensus 30 l~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~~y~ 109 (138)
T KOG0896|consen 30 LEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVLARWQRSYS 109 (138)
T ss_pred ccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccchhhcccccch
Confidence 57899999999999999999999999999999999999999999999999999999998788887766655689999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 81 MEDILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 81 l~~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
++.+|.+++.+|++..+.+.++|++++.|
T Consensus 110 ~~~vl~~lr~~m~~~eN~kl~qp~eg~~~ 138 (138)
T KOG0896|consen 110 IKMVLGQLRKEMMSKENRKLPQPPEGQCF 138 (138)
T ss_pred hhHHHHhhhHHHHHHHhhcccCCCCCCcC
Confidence 99999999999999999999999999876
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.1e-19 Score=130.74 Aligned_cols=86 Identities=28% Similarity=0.437 Sum_probs=76.2
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCC-CCCCCeeeccCCCCC-CCCCCCCC
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV-NHETGVVEPKKFGLL-VNWQREYT 80 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv-~~~~g~ic~~~l~~~-~~W~p~~~ 80 (109)
=+||+| +|+.+|.||.+|-||||+|+.+|.||.+||++||.+..+| ||- ++.+..||+++-+.. +.|.|+|+
T Consensus 35 lEdNlF--EWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLT----pNGRFE~nkKiCLSISgyHPEtWqPSWS 108 (314)
T KOG0428|consen 35 LEDNLF--EWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLT----PNGRFEVNKKICLSISGYHPETWQPSWS 108 (314)
T ss_pred chhcee--eEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEc----CCCceeeCceEEEEecCCCccccCcchh
Confidence 478999 9999999999999999999999999999999999999999 553 222568999998743 89999999
Q ss_pred HHHHHHHHHHHhcC
Q 033897 81 MEDILTQLKKEMAA 94 (109)
Q Consensus 81 l~~il~~i~~ll~~ 94 (109)
|+..|++|..+|-+
T Consensus 109 iRTALlAlIgFmPt 122 (314)
T KOG0428|consen 109 IRTALLALIGFMPT 122 (314)
T ss_pred HHHHHHHHHccccC
Confidence 99999999999853
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.3e-16 Score=131.97 Aligned_cols=81 Identities=19% Similarity=0.325 Sum_probs=75.3
Q ss_pred EEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCcccccccc--ccCCCCCCCCeeeccCCCCC-----CCCCCCCCHHHH
Q 033897 12 WTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI--NMTCVNHETGVVEPKKFGLL-----VNWQREYTMEDI 84 (109)
Q Consensus 12 w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i--~Hpnv~~~~g~ic~~~l~~~-----~~W~p~~~l~~i 84 (109)
.+++|.||+||||++|.|.|.+.||++||.+||.|...+.- ++||+|. +|++|+++|+.+ +.|+|+.++.++
T Consensus 883 ~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~-~g~vc~s~l~tw~g~~~e~w~~~s~~lq~ 961 (1101)
T KOG0895|consen 883 LRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYE-DGKVCLSLLNTWHGRGNEVWNPSSSILQV 961 (1101)
T ss_pred HHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccccc-ccceehhhhccccCCCccccCcchhHHHH
Confidence 37889999999999999999999999999999999999854 7999998 999999999963 789999999999
Q ss_pred HHHHHHHhc
Q 033897 85 LTQLKKEMA 93 (109)
Q Consensus 85 l~~i~~ll~ 93 (109)
|.+||.|..
T Consensus 962 l~s~q~l~l 970 (1101)
T KOG0895|consen 962 LVSIQGLVL 970 (1101)
T ss_pred HHHhhhhhc
Confidence 999999975
No 23
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.3e-15 Score=108.08 Aligned_cols=102 Identities=14% Similarity=0.333 Sum_probs=88.2
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCC--CCCCccccccccccCCCCCCCCeeeccCCCCCCCC-CCCC
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYP--EKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNW-QREY 79 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP--~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W-~p~~ 79 (109)
...|-+ .|.++|++. .+.|+||+|+|+|.+|++|| ...|+|.|.+.++||.|.+.++.+|+.-.= ..| +...
T Consensus 44 Syan~l--~WFGViFvr-~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~raf--~eWRk~eh 118 (258)
T KOG0429|consen 44 SYANKL--LWFGVIFVR-KGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRAF--PEWRKEEH 118 (258)
T ss_pred cccccc--eEEEEEEEe-cccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhhh--hhhhcccc
Confidence 345667 899999974 56799999999999999999 489999999999999999999999998643 669 5778
Q ss_pred CHHHHHHHHHHHhcCCCCCCC--CCCCCCCCC
Q 033897 80 TMEDILTQLKKEMAAPHNRKL--VQPPEGTYF 109 (109)
Q Consensus 80 ~l~~il~~i~~ll~~p~~~~~--~~~~a~~~~ 109 (109)
.|.++|.-+|..+.+|+.+.. .||||+..|
T Consensus 119 hiwqvL~ylqriF~dpd~si~kl~N~eAa~l~ 150 (258)
T KOG0429|consen 119 HIWQVLVYLQRIFYDPDVSIDKLINPEAAVLY 150 (258)
T ss_pred HHHHHHHHHHHHhcCcccchhhhcChHHHHHH
Confidence 999999999999999987765 599987643
No 24
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=6.4e-13 Score=110.52 Aligned_cols=90 Identities=18% Similarity=0.326 Sum_probs=80.4
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccc---cccCCCCCCCCeeeccCCCCC-----CC
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR---INMTCVNHETGVVEPKKFGLL-----VN 74 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~---i~Hpnv~~~~g~ic~~~l~~~-----~~ 74 (109)
++..+. ..+++|.||.||||++|+|.|+|.||..||..||.|.+++. .+.||.|. +|.||+++|..+ +.
T Consensus 307 ~e~RMd--~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn-~GKVcLslLgTwtg~~~e~ 383 (1101)
T KOG0895|consen 307 DEGRMD--LIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYN-DGKVCLSLLGTWTGSRREK 383 (1101)
T ss_pred cccccc--eeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCccc-CceEEeeeeeecccccccC
Confidence 445555 78999999999999999999999999999999999999987 37999997 999999999743 67
Q ss_pred CCCC-CCHHHHHHHHHHHhcCC
Q 033897 75 WQRE-YTMEDILTQLKKEMAAP 95 (109)
Q Consensus 75 W~p~-~~l~~il~~i~~ll~~p 95 (109)
|++. .++.++|.+||.++..-
T Consensus 384 wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 384 WTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred CCccccchhhhhhhhhhhhccc
Confidence 9888 89999999999999754
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.4e-09 Score=68.57 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=57.2
Q ss_pred EEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCC
Q 033897 29 YQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHN 97 (109)
Q Consensus 29 ~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~il~~i~~ll~~p~~ 97 (109)
.-+.+.|+++||+.||.+|-..|+..-..-..+|.||+.+|+ .++|+.+++++.++++|..++.+-..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt-~qgwssay~Ve~vi~qiaatlVkG~~ 80 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT-KQGWSSAYEVERVIMQIAATLVKGGA 80 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc-cccccchhhHHHHHHHHHHHhhccce
Confidence 456778999999999999999877554443448999999997 69999999999999999999987544
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.51 E-value=2e-07 Score=62.16 Aligned_cols=67 Identities=21% Similarity=0.324 Sum_probs=59.6
Q ss_pred CCCEEEEEEEccCCCCCCCCcccccccc---ccCCCCCCCCeeec---cCCCCCCCCCCCCCHHHHHHHHHHHhcC
Q 033897 25 EGRIYQLKLFCDKDYPEKPPSVRFHSRI---NMTCVNHETGVVEP---KKFGLLVNWQREYTMEDILTQLKKEMAA 94 (109)
Q Consensus 25 egg~~~~~i~fp~~yP~~pP~v~f~t~i---~Hpnv~~~~g~ic~---~~l~~~~~W~p~~~l~~il~~i~~ll~~ 94 (109)
.|+.+.++|.+|+.||..||.|....+- +=|||+. +|.+|+ ...- +.|.|.-.+.++|.+.+.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~-~G~LCl~~~~~~~--D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVES-DGKLCLLDEELVL--DPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcC-CCeEEEecCCccc--CccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999888654 6799998 999999 5543 8999999999999999999974
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.18 E-value=1.5e-06 Score=57.30 Aligned_cols=68 Identities=21% Similarity=0.414 Sum_probs=48.8
Q ss_pred CCCCCEEE--EEEEccCCCCCCCCcccccccc-----ccCCCCCCCCeeeccCCCCCCCCCC-CCCHHHHHHHHHHHhcC
Q 033897 23 VHEGRIYQ--LKLFCDKDYPEKPPSVRFHSRI-----NMTCVNHETGVVEPKKFGLLVNWQR-EYTMEDILTQLKKEMAA 94 (109)
Q Consensus 23 ~yegg~~~--~~i~fp~~yP~~pP~v~f~t~i-----~Hpnv~~~~g~ic~~~l~~~~~W~p-~~~l~~il~~i~~ll~~ 94 (109)
.|+|..|. +.|-+|.+||.+||.+...... -+.+||. +|+|.+..| +.|+. ..+|.+++..++..+.+
T Consensus 42 ~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~-~G~v~~pyL---~~W~~~~s~L~~lv~~l~~~F~~ 117 (121)
T PF05743_consen 42 TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDS-NGRVYLPYL---QNWNPPSSNLVDLVQELQAVFSE 117 (121)
T ss_dssp CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-T-TSBB-SHHH---HT--TTTS-HHHHHHHHHHCCCH
T ss_pred ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECC-CCCEeCchh---ccCCCCCCCHHHHHHHHHHHHhH
Confidence 58888886 5666999999999999775322 2449998 999999988 69976 88999999888887764
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.0013 Score=50.15 Aligned_cols=76 Identities=17% Similarity=0.290 Sum_probs=58.4
Q ss_pred CCCCCCCCCCEEEEE--EEccCCCCCCCCccccccc-----cccCCCCCCCCeeeccCCCCCCCCC-CCCCHHHHHHHHH
Q 033897 18 GPHNTVHEGRIYQLK--LFCDKDYPEKPPSVRFHSR-----INMTCVNHETGVVEPKKFGLLVNWQ-REYTMEDILTQLK 89 (109)
Q Consensus 18 Gp~~t~yegg~~~~~--i~fp~~yP~~pP~v~f~t~-----i~Hpnv~~~~g~ic~~~l~~~~~W~-p~~~l~~il~~i~ 89 (109)
|---.+|.|.+|.+- +-+.+.||..||.+..... -.|-+||. +|.|.+..| ..|. |+.+|..++..+.
T Consensus 57 GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~-nG~V~LPYL---h~W~~pssdLv~Liq~l~ 132 (365)
T KOG2391|consen 57 GTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDP-NGKVYLPYL---HNWDPPSSDLVGLIQELI 132 (365)
T ss_pred CcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCC-CCeEechhh---ccCCCccchHHHHHHHHH
Confidence 333457888888754 4589999999999854311 14899998 999999998 5895 7788999998888
Q ss_pred HHhcCCCC
Q 033897 90 KEMAAPHN 97 (109)
Q Consensus 90 ~ll~~p~~ 97 (109)
+.+.++.+
T Consensus 133 a~f~~~pP 140 (365)
T KOG2391|consen 133 AAFSEDPP 140 (365)
T ss_pred HHhcCCCc
Confidence 88876433
No 29
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=95.96 E-value=0.09 Score=34.73 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=50.7
Q ss_pred EEC--CCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCee--eccCCC------------CCCCCCCCC
Q 033897 16 IIG--PHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV--EPKKFG------------LLVNWQREY 79 (109)
Q Consensus 16 i~G--p~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~i--c~~~l~------------~~~~W~p~~ 79 (109)
|.| -+.+.|.+..-.+-|.+|+.||..+|.+-+..|-..-. .+|.+ |.+... +...|+|..
T Consensus 29 i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~---~G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~P~~ 105 (122)
T PF14462_consen 29 IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA---DGGPIPNAAEVTQTFDGRTWQRWSRHNNPWRPGV 105 (122)
T ss_pred EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc---CCCcCCchhcchhhcCCeeeeeecCCCCCCCCCC
Confidence 555 35566999999999999999999999988776532111 12333 333222 125677654
Q ss_pred -CHHHHHHHHHHHhc
Q 033897 80 -TMEDILTQLKKEMA 93 (109)
Q Consensus 80 -~l~~il~~i~~ll~ 93 (109)
+|.+.|..|...|.
T Consensus 106 D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 106 DDLWTHLARVEHALA 120 (122)
T ss_pred CcHHHHHHHHHHHHh
Confidence 78888988888775
No 30
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.48 E-value=0.032 Score=38.55 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=49.8
Q ss_pred EEEEccCCCCCCCCccccccccc---cCCCCCCC-----CeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcC
Q 033897 31 LKLFCDKDYPEKPPSVRFHSRIN---MTCVNHET-----GVVEPKKFGLLVNWQREYTMEDILTQLKKEMAA 94 (109)
Q Consensus 31 ~~i~fp~~yP~~pP~v~f~t~i~---Hpnv~~~~-----g~ic~~~l~~~~~W~p~~~l~~il~~i~~ll~~ 94 (109)
+.|.|+.+||..+|.|.+..+-| +||++. . ..+|+..-. ...|.++++++.+|..|..-|..
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~-~~~~~p~~lCl~~~~-~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNP-GPEGEPVSLCLYEGP-WSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCC-CCCCCCccceEecCC-HHHhhhccCHHHHHHHHHHHHHH
Confidence 66889999999999877776543 477765 5 689987654 47889999999999999988853
No 31
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=95.05 E-value=0.036 Score=37.57 Aligned_cols=66 Identities=12% Similarity=0.181 Sum_probs=30.4
Q ss_pred ECCCCCCCCCC----------EEEEEEEccCCCCCCCCcccccccc-ccCCCCCCCCeeeccCCCCCCCC---CCCCCHH
Q 033897 17 IGPHNTVHEGR----------IYQLKLFCDKDYPEKPPSVRFHSRI-NMTCVNHETGVVEPKKFGLLVNW---QREYTME 82 (109)
Q Consensus 17 ~Gp~~t~yegg----------~~~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~~~g~ic~~~l~~~~~W---~p~~~l~ 82 (109)
.-+.||-|.|. .|.+++.+|..||..||.+..-.-- --.-.|. +|.||++.== ..-| .|.+.|.
T Consensus 55 sn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYR-GGkIClt~HF-kPLWakN~PkfGIa 132 (161)
T PF08694_consen 55 SNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPELDGKTAKMYR-GGKICLTDHF-KPLWAKNVPKFGIA 132 (161)
T ss_dssp E-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGGTTT-SSBCC-CCBB---TTH-HHHHHCTTTT--HH
T ss_pred cCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceeccccCCchhhhhc-CceEeeeccc-chhhhhcCCchhHH
Confidence 34677777664 3457777899999999999764311 1133565 8999997521 1234 3555555
Q ss_pred HH
Q 033897 83 DI 84 (109)
Q Consensus 83 ~i 84 (109)
-.
T Consensus 133 Ha 134 (161)
T PF08694_consen 133 HA 134 (161)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=94.66 E-value=0.074 Score=33.27 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=26.4
Q ss_pred EEEEEEEC--CCCCCCCCCEEEEEEEccCCCCCCCCccccccc
Q 033897 11 SWTGTIIG--PHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR 51 (109)
Q Consensus 11 ~w~~~i~G--p~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~ 51 (109)
.+.+.+.+ ...+.-....+.+.+.||++||..+|.+...+.
T Consensus 31 ~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 31 SLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp EEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred ceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 44555522 233444567899999999999999999987765
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=93.83 E-value=0.23 Score=30.73 Aligned_cols=27 Identities=15% Similarity=0.376 Sum_probs=22.6
Q ss_pred CCCEEEEEEEccCCCCCCCCccccccc
Q 033897 25 EGRIYQLKLFCDKDYPEKPPSVRFHSR 51 (109)
Q Consensus 25 egg~~~~~i~fp~~yP~~pP~v~f~t~ 51 (109)
....+.+.+.+|++||..+|.+.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345688999999999999999988763
No 34
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=80.58 E-value=13 Score=28.59 Aligned_cols=60 Identities=20% Similarity=0.384 Sum_probs=41.6
Q ss_pred CCCCCEEEEEEEccCCCCCCCCcccccc-ccccCCCCCCCCeeeccCCCCCCCCCCC--CCHHHHHHHHHHH
Q 033897 23 VHEGRIYQLKLFCDKDYPEKPPSVRFHS-RINMTCVNHETGVVEPKKFGLLVNWQRE--YTMEDILTQLKKE 91 (109)
Q Consensus 23 ~yegg~~~~~i~fp~~yP~~pP~v~f~t-~i~Hpnv~~~~g~ic~~~l~~~~~W~p~--~~l~~il~~i~~l 91 (109)
||.|...+-+|.|...+|..||.+.|.. .-|+|... . +..| .+|... ..+..++..+..+
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s----~--l~~L---~~Wd~~dp~~Ll~li~EL~~~ 123 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS----K--LPSL---VNWDPSDPNCLLNLISELRQL 123 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh----h--cchh---hcCCCCCchHHHHHHHHHHHH
Confidence 5899999999999999999999999963 23666321 1 2233 678544 3555666665544
No 35
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.29 E-value=6.3 Score=26.48 Aligned_cols=57 Identities=12% Similarity=0.197 Sum_probs=36.5
Q ss_pred EEEEEEECCCCCCCCCC----------EEEEEEEccCCCCCCCCcccccccc-ccCCCCCCCCeeeccC
Q 033897 11 SWTGTIIGPHNTVHEGR----------IYQLKLFCDKDYPEKPPSVRFHSRI-NMTCVNHETGVVEPKK 68 (109)
Q Consensus 11 ~w~~~i~Gp~~t~yegg----------~~~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~~~g~ic~~~ 68 (109)
.|.-.=.-+.||-|-|. .|.+++.+|-.||..+|.+..-.-- ----.+. +|.||+..
T Consensus 52 dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgktakmyr-ggkiclt~ 119 (167)
T KOG3357|consen 52 DWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGKTAKMYR-GGKICLTD 119 (167)
T ss_pred cceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCchhhhhhc-CceEeecc
Confidence 34333345788888774 3556777899999999998653210 0112454 89999864
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=63.41 E-value=7.1 Score=28.22 Aligned_cols=22 Identities=18% Similarity=0.470 Sum_probs=19.3
Q ss_pred EEEEEEEccCCCCCCCCccccc
Q 033897 28 IYQLKLFCDKDYPEKPPSVRFH 49 (109)
Q Consensus 28 ~~~~~i~fp~~yP~~pP~v~f~ 49 (109)
.+.+.+.++.+||.++|-+.+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred cEEEEEEccCCCCCCCcceecc
Confidence 7889999999999999999443
No 37
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=62.27 E-value=2.7 Score=29.91 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=33.4
Q ss_pred CCeeeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Q 033897 61 TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPP 104 (109)
Q Consensus 61 ~g~ic~~~l~~~~~W~p~~~l~~il~~i~~ll~~p~~~~~~~~~ 104 (109)
.+..|.++++ ..|+|.+|.++.+.-++.++.+-...-+.|.+
T Consensus 135 ~~~f~~sIlD--r~Y~pdmt~eea~~lmkKCv~El~kRlvin~~ 176 (200)
T KOG0177|consen 135 GSYFCLSILD--RYYKPDMTIEEALDLMKKCVLELKKRLVINLP 176 (200)
T ss_pred hhhhhHHHHH--hhhCCCCCHHHHHHHHHHHHHHHHHhcccCCC
Confidence 5789999998 99999999999988888887665555555544
No 38
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=62.14 E-value=17 Score=31.26 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=25.2
Q ss_pred EEEEECCCCCCCCCC-EEEEEEEccCCCCC-CCCccccccc
Q 033897 13 TGTIIGPHNTVHEGR-IYQLKLFCDKDYPE-KPPSVRFHSR 51 (109)
Q Consensus 13 ~~~i~Gp~~t~yegg-~~~~~i~fp~~yP~-~pP~v~f~t~ 51 (109)
.+.+.||-.-- .|- ..++.|.||.+||. .+|+++|..+
T Consensus 452 tvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 452 TVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred EEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 34455543222 232 34688899999996 7899999764
No 39
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=61.22 E-value=31 Score=21.05 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=27.6
Q ss_pred eEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccc
Q 033897 10 RSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR 51 (109)
Q Consensus 10 ~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~ 51 (109)
++|.+.|.|+.+.-...-+=++...+.+.|+. |...+..+
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 68999999988876666677788888888875 55555544
No 40
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=56.10 E-value=13 Score=24.83 Aligned_cols=25 Identities=24% Similarity=0.636 Sum_probs=22.7
Q ss_pred CCEEEEEEEccCCCC-CCCCcccccc
Q 033897 26 GRIYQLKLFCDKDYP-EKPPSVRFHS 50 (109)
Q Consensus 26 gg~~~~~i~fp~~yP-~~pP~v~f~t 50 (109)
.|.|.|+-.+|-.|| .+||.|.|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 499999999999999 9999998875
No 41
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=55.38 E-value=36 Score=23.48 Aligned_cols=22 Identities=14% Similarity=-0.094 Sum_probs=16.6
Q ss_pred ccccccc---CCCCCCCCeeeccCCC
Q 033897 48 FHSRINM---TCVNHETGVVEPKKFG 70 (109)
Q Consensus 48 f~t~i~H---pnv~~~~g~ic~~~l~ 70 (109)
-.|++|| +||+. +|.||+-...
T Consensus 88 ~~T~Ly~aPf~NV~~-~g~vC~G~~~ 112 (175)
T PF14460_consen 88 PDTPLYHAPFFNVYS-NGSVCWGNNS 112 (175)
T ss_pred CCCeeEeCCccccCC-CCcEeeCCCc
Confidence 4566666 79997 8999997644
No 42
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=55.11 E-value=14 Score=26.06 Aligned_cols=26 Identities=12% Similarity=0.295 Sum_probs=23.3
Q ss_pred CCCEEEEEEEccCCCCCCCCcccccc
Q 033897 25 EGRIYQLKLFCDKDYPEKPPSVRFHS 50 (109)
Q Consensus 25 egg~~~~~i~fp~~yP~~pP~v~f~t 50 (109)
+.|.|.|+-.+|--||.++|.|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 35999999999999999999999875
No 43
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=48.30 E-value=21 Score=24.42 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=22.4
Q ss_pred CCEEEEEEEccCCCC-----CCCCcccccc
Q 033897 26 GRIYQLKLFCDKDYP-----EKPPSVRFHS 50 (109)
Q Consensus 26 gg~~~~~i~fp~~yP-----~~pP~v~f~t 50 (109)
.|.|.|+-.+|-.|| .+||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 389999999999999 8999998875
No 44
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=47.59 E-value=6.4 Score=29.63 Aligned_cols=50 Identities=24% Similarity=0.491 Sum_probs=33.9
Q ss_pred CEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCC-CCCHHHHHHHHHHHhc
Q 033897 27 RIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQR-EYTMEDILTQLKKEMA 93 (109)
Q Consensus 27 g~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p-~~~l~~il~~i~~ll~ 93 (109)
..-.++|.++.+||.++|.+..--++ .. ...|.+ ..++.+++.+.+..|.
T Consensus 137 R~H~l~l~l~~~yp~~~p~~~~~~P~--------------~~---~~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 137 RQHYLELKLPSNYPFEPPSCSLDLPI--------------PF---SLSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp EEEEEEEETTTTTTTSEEEECS-TTS---------------H---HHHHHCHT-SHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCCCCceeeCCCCc--------------ch---hhhhcccccCHHHHHHHHHHHHH
Confidence 45668999999999999975333221 11 146777 7789999888777763
No 45
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=42.33 E-value=68 Score=23.43 Aligned_cols=38 Identities=8% Similarity=0.073 Sum_probs=24.4
Q ss_pred cccccc---CCCCCCCCeeeccCCCCCCCCCC-CCCHHHHHHHHHHHhc
Q 033897 49 HSRINM---TCVNHETGVVEPKKFGLLVNWQR-EYTMEDILTQLKKEMA 93 (109)
Q Consensus 49 ~t~i~H---pnv~~~~g~ic~~~l~~~~~W~p-~~~l~~il~~i~~ll~ 93 (109)
.|++|| .||+. +|+||+-... .| ..++.+ +......+.
T Consensus 130 ~T~L~~aPffNV~~-~G~VC~G~~~-----~P~~~~~~~-i~~we~~FF 171 (228)
T TIGR03737 130 ETKLYQAPLFNVWS-NGEICAGNAR-----LPDRPTVAN-ISAWEDAFF 171 (228)
T ss_pred CCeeccCCcCccCC-CCeEeeCCCc-----CCCCcCHHH-HHHHHHHHh
Confidence 355555 69997 8999987643 22 235566 666666654
No 46
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=40.73 E-value=25 Score=29.17 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=25.1
Q ss_pred CCCCCCEEEEEEEccCCCCC---CCCcccccccc
Q 033897 22 TVHEGRIYQLKLFCDKDYPE---KPPSVRFHSRI 52 (109)
Q Consensus 22 t~yegg~~~~~i~fp~~yP~---~pP~v~f~t~i 52 (109)
+||.=|.|-+ +.+|+.||+ +-|.++|+|+-
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~TpT 280 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTPT 280 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecch
Confidence 5787788887 568999995 89999999974
No 47
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=40.18 E-value=29 Score=26.77 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=20.9
Q ss_pred CEEEEEEEccCCCCCCCCcccccc
Q 033897 27 RIYQLKLFCDKDYPEKPPSVRFHS 50 (109)
Q Consensus 27 g~~~~~i~fp~~yP~~pP~v~f~t 50 (109)
=.|-+.+.+|..||...|.++|.+
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEe
Confidence 346688889999999999999987
No 48
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=39.54 E-value=37 Score=22.76 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=20.0
Q ss_pred CCCceeEEEEEEECCCCCCCC-CCEEEEEEEc
Q 033897 5 DDIYMRSWTGTIIGPHNTVHE-GRIYQLKLFC 35 (109)
Q Consensus 5 ~d~~~~~w~~~i~Gp~~t~ye-gg~~~~~i~f 35 (109)
.|.. .|.+++.|+.||+.. +.+|-+++.|
T Consensus 45 Gd~~--~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 45 GDPE--WYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred CCCc--ceEEEEECCCCcceeccccchheeeH
Confidence 3444 678999999998873 5565555544
No 49
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=34.65 E-value=39 Score=25.99 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=21.4
Q ss_pred CEEEEEEEccCCCCCCCCccccccc
Q 033897 27 RIYQLKLFCDKDYPEKPPSVRFHSR 51 (109)
Q Consensus 27 g~~~~~i~fp~~yP~~pP~v~f~t~ 51 (109)
-.+.+.+..++.||.+.|.|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 3566888899999999999998875
No 50
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=32.98 E-value=47 Score=23.50 Aligned_cols=25 Identities=8% Similarity=0.263 Sum_probs=20.8
Q ss_pred CCEEEEEEEccCCCCC-----CCCcccccc
Q 033897 26 GRIYQLKLFCDKDYPE-----KPPSVRFHS 50 (109)
Q Consensus 26 gg~~~~~i~fp~~yP~-----~pP~v~f~t 50 (109)
.|.|.|+-.+|-.||. +||.|.|.-
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~V 125 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVSV 125 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 4889999999999998 777777653
No 51
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=32.13 E-value=88 Score=23.34 Aligned_cols=43 Identities=23% Similarity=0.357 Sum_probs=27.9
Q ss_pred EEEEEEECCCCCCCCC---CEEEEEEEcc-----CCCCCCCCccccccccc
Q 033897 11 SWTGTIIGPHNTVHEG---RIYQLKLFCD-----KDYPEKPPSVRFHSRIN 53 (109)
Q Consensus 11 ~w~~~i~Gp~~t~yeg---g~~~~~i~fp-----~~yP~~pP~v~f~t~i~ 53 (109)
=|++....-..-.-+| ..|+.++++. .+-||++|+|+.+++-|
T Consensus 104 PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 104 PWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 4766666432222333 3455666654 68899999999998764
No 52
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=31.92 E-value=51 Score=23.15 Aligned_cols=25 Identities=8% Similarity=0.197 Sum_probs=19.9
Q ss_pred CCEEEEEEEccCCCCC-----CCCcccccc
Q 033897 26 GRIYQLKLFCDKDYPE-----KPPSVRFHS 50 (109)
Q Consensus 26 gg~~~~~i~fp~~yP~-----~pP~v~f~t 50 (109)
.|.|.|+-.+|-.||. +||.|.|.-
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~V 121 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVWV 121 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 3889999999999995 777766653
No 53
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=30.53 E-value=39 Score=19.29 Aligned_cols=18 Identities=22% Similarity=0.754 Sum_probs=11.0
Q ss_pred CCCCCCCCHHHHHHHHHH
Q 033897 73 VNWQREYTMEDILTQLKK 90 (109)
Q Consensus 73 ~~W~p~~~l~~il~~i~~ 90 (109)
-+|.|.++|++++...-.
T Consensus 36 LgW~p~~~L~~~i~~~w~ 53 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRDAWN 53 (62)
T ss_dssp C----SSSHHHHHHHHHH
T ss_pred hCCCcCCCHHHHHHHHHH
Confidence 479999999999976544
No 54
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=28.23 E-value=52 Score=23.90 Aligned_cols=57 Identities=16% Similarity=0.327 Sum_probs=43.8
Q ss_pred CCCCccccccccccCCCCC-CCCeeeccCCCCCCCC--CCCCCHHHHHHHHHHHhcCCCCCC
Q 033897 41 EKPPSVRFHSRINMTCVNH-ETGVVEPKKFGLLVNW--QREYTMEDILTQLKKEMAAPHNRK 99 (109)
Q Consensus 41 ~~pP~v~f~t~i~Hpnv~~-~~g~ic~~~l~~~~~W--~p~~~l~~il~~i~~ll~~p~~~~ 99 (109)
.+||.|-|-.+.|..-||- +.|.|-..+-+ .+| -|..++.+-|..|..+|-.|+.++
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelan--agrplfpg~dvddqlkrif~~lg~p~ed~ 226 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELAN--AGRPLFPGNDVDDQLKRIFRLLGTPTEDQ 226 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhh--cCCCCCCCCcHHHHHHHHHHHhCCCcccc
Confidence 4799999999998888763 14555555554 566 688899999999999998887654
No 55
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=27.90 E-value=1.2e+02 Score=21.11 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=17.7
Q ss_pred EEEEEEccCCCCCCCCccccccc
Q 033897 29 YQLKLFCDKDYPEKPPSVRFHSR 51 (109)
Q Consensus 29 ~~~~i~fp~~yP~~pP~v~f~t~ 51 (109)
..+++.| .+|-..||+|.|+.+
T Consensus 55 ~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 55 LRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred eEEEEec-cccCcCCCceEEecc
Confidence 4566666 689999999999877
No 56
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=26.11 E-value=38 Score=23.40 Aligned_cols=15 Identities=13% Similarity=0.011 Sum_probs=11.2
Q ss_pred cccccCCCCCCCCeeec
Q 033897 50 SRINMTCVNHETGVVEP 66 (109)
Q Consensus 50 t~i~Hpnv~~~~g~ic~ 66 (109)
.++|||+.| .|.+|.
T Consensus 49 KPiYhP~~D--cGD~VV 63 (165)
T KOG3203|consen 49 KPIYHPSTD--CGDHVV 63 (165)
T ss_pred CCccCCccC--CCCEEE
Confidence 478999998 466554
No 57
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=25.45 E-value=1.1e+02 Score=23.73 Aligned_cols=39 Identities=15% Similarity=0.415 Sum_probs=28.9
Q ss_pred EEEEEEECCCCC-CCCCCEEEEEEE---ccCCCCCCCCcccccc
Q 033897 11 SWTGTIIGPHNT-VHEGRIYQLKLF---CDKDYPEKPPSVRFHS 50 (109)
Q Consensus 11 ~w~~~i~Gp~~t-~yegg~~~~~i~---fp~~yP~~pP~v~f~t 50 (109)
.|+..+.|-.++ -|++|.+++++. |-.-+ .+.|+|||-.
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~-qR~PriRfG~ 240 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY-QRGPRIRFGM 240 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEecccccccc-ccCCceEeeE
Confidence 578899997666 789999999886 33333 3566999954
No 58
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=24.64 E-value=79 Score=23.85 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=20.8
Q ss_pred CCEEEEEEEccCCCC------------------CCCCcccccc
Q 033897 26 GRIYQLKLFCDKDYP------------------EKPPSVRFHS 50 (109)
Q Consensus 26 gg~~~~~i~fp~~yP------------------~~pP~v~f~t 50 (109)
.|.|.|+-.+|..|| .+||.|.|.-
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 222 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFFV 222 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEEE
Confidence 489999999999997 5778887764
No 59
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=23.87 E-value=82 Score=20.11 Aligned_cols=21 Identities=24% Similarity=0.733 Sum_probs=17.1
Q ss_pred eEEEEEEECCCCCCCCCCEEEEE
Q 033897 10 RSWTGTIIGPHNTVHEGRIYQLK 32 (109)
Q Consensus 10 ~~w~~~i~Gp~~t~yegg~~~~~ 32 (109)
++|+|.|=| +..|+|-.|.|.
T Consensus 1 ~kWkC~iCg--~~I~~gqlFTF~ 21 (101)
T PF09943_consen 1 KKWKCYICG--KPIYEGQLFTFT 21 (101)
T ss_pred CceEEEecC--CeeeecceEEEe
Confidence 379999986 558999999884
No 60
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=22.05 E-value=95 Score=23.33 Aligned_cols=25 Identities=20% Similarity=0.513 Sum_probs=21.0
Q ss_pred CCEEEEEEEccCCCC------------------CCCCcccccc
Q 033897 26 GRIYQLKLFCDKDYP------------------EKPPSVRFHS 50 (109)
Q Consensus 26 gg~~~~~i~fp~~yP------------------~~pP~v~f~t 50 (109)
.|.|.|+-..|..|| .+||.|.|.-
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~V 214 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFMV 214 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEEE
Confidence 599999999999998 4788887764
No 61
>PHA00458 single-stranded DNA-binding protein
Probab=21.25 E-value=41 Score=24.57 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=22.7
Q ss_pred CCCCCEEEEEEEccCCCCCCCCcccccccc
Q 033897 23 VHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 52 (109)
Q Consensus 23 ~yegg~~~~~i~fp~~yP~~pP~v~f~t~i 52 (109)
-.+.|.|++.|.|+.+.|...+.|.-+++.
T Consensus 33 ~n~rG~Ykv~lt~~~d~P~~qkmid~I~~~ 62 (233)
T PHA00458 33 FNPRGVYKVSLTVSNDDPRCQKMIDEIVKA 62 (233)
T ss_pred cCCCceeEEEEEecCCChHHHHHHHHHHHH
Confidence 357899999999999998775555544443
No 62
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=20.24 E-value=1.1e+02 Score=23.07 Aligned_cols=25 Identities=16% Similarity=0.471 Sum_probs=20.3
Q ss_pred CCEEEEEEEccCCCC------------------CCCCcccccc
Q 033897 26 GRIYQLKLFCDKDYP------------------EKPPSVRFHS 50 (109)
Q Consensus 26 gg~~~~~i~fp~~yP------------------~~pP~v~f~t 50 (109)
.|.|.|+-..|..|| .+||.|.|.-
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 218 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFFV 218 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEEE
Confidence 499999999999996 5677777754
Done!