Query 033897
Match_columns 109
No_of_seqs 104 out of 1147
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 12:30:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r0j_A Ubiquitin carrier prote 100.0 2.7E-40 9.4E-45 223.7 7.2 102 3-109 26-127 (149)
2 2awf_A Ubiquitin-conjugating e 100.0 1.8E-39 6.3E-44 224.2 11.1 104 3-109 43-157 (172)
3 2ayv_A Ubiquitin-conjugating e 100.0 4.6E-40 1.6E-44 226.2 7.8 102 3-109 46-147 (166)
4 2e2c_A Ubiquitin conjugating e 100.0 6.1E-40 2.1E-44 223.4 8.2 102 3-109 34-135 (156)
5 2c2v_B Ubiquitin-conjugating e 100.0 2.7E-40 9.2E-45 224.8 6.3 102 3-109 30-131 (154)
6 1jat_B Ubiquitin-conjugating e 100.0 6.2E-40 2.1E-44 219.5 7.9 99 6-109 38-138 (138)
7 4gpr_A Ubiquitin-conjugating e 100.0 5.4E-40 1.8E-44 222.6 7.4 102 3-109 29-130 (151)
8 2ucz_A UBC7, ubiquitin conjuga 100.0 4.4E-40 1.5E-44 225.8 7.1 104 3-109 30-144 (165)
9 1fxt_A Ubiquitin-conjugating e 100.0 3E-40 1E-44 223.4 6.0 103 3-109 27-129 (149)
10 2q0v_A Ubiquitin-conjugating e 100.0 2.8E-39 9.7E-44 220.3 10.5 98 6-109 53-153 (156)
11 1jat_A Ubiquitin-conjugating e 100.0 8.4E-40 2.9E-44 222.5 7.8 102 3-109 30-131 (155)
12 3h8k_A Ubiquitin-conjugating e 100.0 1.3E-39 4.4E-44 223.3 8.2 104 3-109 29-143 (164)
13 2bep_A Ubiquitin-conjugating e 100.0 1.1E-39 3.8E-44 222.7 7.6 103 3-109 36-138 (159)
14 2c4o_A Ubiquitin-conjugating e 100.0 1E-39 3.4E-44 224.3 7.4 101 3-108 44-144 (165)
15 1ayz_A UBC2, ubiquitin-conjuga 100.0 6.5E-40 2.2E-44 226.0 6.4 102 3-109 29-130 (169)
16 1z2u_A Ubiquitin-conjugating e 100.0 7.1E-40 2.4E-44 221.8 6.2 101 3-108 29-129 (150)
17 2gjd_A Ubiquitin-conjugating e 100.0 1.3E-39 4.5E-44 222.0 7.1 102 5-109 36-137 (157)
18 3rcz_B SUMO-conjugating enzyme 100.0 1.3E-39 4.3E-44 223.4 7.0 101 6-109 43-143 (163)
19 1i7k_A Ubiquitin-conjugating e 100.0 1E-39 3.5E-44 226.8 6.6 102 3-109 55-156 (179)
20 2aak_A UBC1, ubiquitin conjuga 100.0 1E-39 3.4E-44 221.5 6.3 102 3-109 29-130 (152)
21 3rz3_A Ubiquitin-conjugating e 100.0 2.4E-39 8.2E-44 225.5 8.0 105 2-109 32-147 (183)
22 1zdn_A Ubiquitin-conjugating e 100.0 8.6E-40 2.9E-44 223.1 5.6 102 3-109 38-139 (158)
23 1y8x_A Ubiquitin-conjugating e 100.0 2.2E-39 7.6E-44 221.5 7.4 102 2-109 29-130 (160)
24 1yh2_A HSPC150 protein similar 100.0 3.1E-39 1.1E-43 222.5 7.6 104 3-109 29-134 (169)
25 2a4d_A Ubiquitin-conjugating e 100.0 1.6E-38 5.6E-43 217.3 10.5 103 3-107 52-157 (160)
26 3k9o_A Ubiquitin-conjugating e 100.0 4.1E-39 1.4E-43 227.1 7.6 103 3-109 33-135 (201)
27 2f4z_A Tgtwinscan_2721 - E2 do 100.0 2.7E-39 9.3E-44 226.9 6.3 103 3-109 70-172 (193)
28 1yrv_A Ubiquitin-conjugating l 100.0 1.4E-39 4.7E-44 224.4 4.7 105 3-109 48-152 (169)
29 2grr_A Ubiquitin-conjugating e 100.0 4.3E-39 1.5E-43 220.3 6.9 103 4-109 38-140 (161)
30 2nvu_C NEDD8-conjugating enzym 100.0 4.9E-39 1.7E-43 223.5 6.6 102 2-109 49-150 (180)
31 2y9m_A Ubiquitin-conjugating e 100.0 9.7E-39 3.3E-43 220.6 7.9 104 3-109 43-147 (172)
32 2pwq_A Ubiquitin conjugating e 100.0 1.9E-39 6.5E-44 231.1 4.4 103 3-109 48-150 (216)
33 3bzh_A Ubiquitin-conjugating e 100.0 1.1E-38 3.6E-43 224.1 7.5 102 3-109 73-174 (194)
34 2onu_A Ubiquitin-conjugating e 100.0 2.4E-39 8.2E-44 219.8 2.7 103 3-109 24-127 (152)
35 1tte_A Ubiquitin-conjugating e 100.0 4.3E-39 1.5E-43 229.1 3.3 103 3-109 28-130 (215)
36 2hlw_A Ubiquitin-conjugating e 100.0 4.4E-38 1.5E-42 217.0 8.0 103 3-107 62-167 (170)
37 1wzv_A Ubiquitin-conjugating e 100.0 1.8E-38 6E-43 215.9 5.6 102 3-109 30-131 (155)
38 3e46_A Ubiquitin-conjugating e 100.0 5.1E-38 1.7E-42 228.1 7.6 103 3-109 85-187 (253)
39 1c4z_D UBCH7, ubiquitin conjug 100.0 6.7E-38 2.3E-42 212.9 7.7 101 3-108 28-128 (154)
40 1yf9_A Ubiquitin carrier prote 100.0 1.1E-38 3.8E-43 220.2 3.2 103 3-109 33-136 (171)
41 2fo3_A Ubiquitin-conjugating e 100.0 5.7E-37 1.9E-41 202.1 10.6 93 3-100 31-124 (125)
42 3fn1_B NEDD8-conjugating enzym 100.0 7.2E-38 2.5E-42 215.2 6.2 104 2-109 39-147 (167)
43 3o2u_A NEDD8-conjugating enzym 100.0 1.8E-37 6.2E-42 217.2 7.2 104 2-109 55-159 (190)
44 2z5d_A Ubiquitin-conjugating e 100.0 2.1E-38 7.3E-43 220.1 1.9 101 5-109 48-149 (179)
45 2h2y_A Ubiquitin-conjugating e 100.0 4.7E-36 1.6E-40 200.3 10.9 91 3-98 45-136 (136)
46 2a7l_A Hypothetical ubiquitin- 100.0 4.1E-35 1.4E-39 195.8 10.4 87 2-93 48-136 (136)
47 4ddg_A Ubiquitin-conjugating e 100.0 3.9E-36 1.3E-40 229.9 6.1 102 3-109 28-129 (399)
48 4ds2_A Ubiquitin-conjugating e 100.0 9.4E-36 3.2E-40 204.7 4.1 102 3-109 45-151 (167)
49 3ceg_A Baculoviral IAP repeat- 100.0 5E-33 1.7E-37 207.3 8.4 100 3-105 105-217 (323)
50 2f4w_A Ubiquitin-conjugating e 100.0 8.4E-32 2.9E-36 188.0 8.9 91 3-98 39-130 (187)
51 1zuo_A Hypothetical protein LO 100.0 3.4E-32 1.2E-36 189.9 4.4 95 3-101 55-162 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 4.5E-24 1.5E-28 145.5 3.5 78 4-85 52-143 (172)
53 3r3q_A Suppressor protein STP2 99.8 9.6E-20 3.3E-24 124.4 6.1 85 11-99 62-161 (162)
54 3kpa_A Probable ubiquitin fold 99.6 5E-16 1.7E-20 104.2 4.5 63 11-79 59-132 (168)
55 3obq_A Tumor susceptibility ge 99.5 7.6E-15 2.6E-19 98.6 5.5 79 5-94 51-138 (146)
56 2ebm_A RWD domain-containing p 94.8 0.035 1.2E-06 35.2 4.1 40 11-50 39-78 (128)
57 2yz0_A Serine/threonine-protei 93.6 0.14 4.9E-06 32.7 5.2 39 11-50 47-85 (138)
58 2ebk_A RWD domain-containing p 93.2 0.28 9.4E-06 31.0 6.0 39 11-50 41-79 (128)
59 2day_A Ring finger protein 25; 92.9 0.24 8.1E-06 31.2 5.3 64 27-96 59-126 (128)
60 1ukx_A GCN2, GCN2 EIF2alpha ki 91.1 0.12 4.2E-06 32.9 2.3 62 27-94 63-128 (137)
61 3zqs_A E3 ubiquitin-protein li 91.1 0.95 3.3E-05 31.0 6.9 61 11-93 27-87 (186)
62 2dax_A Protein C21ORF6; RWD do 89.8 0.22 7.4E-06 32.6 2.7 25 27-51 73-97 (152)
63 2daw_A RWD domain containing p 87.8 0.37 1.3E-05 31.7 2.8 24 27-50 75-98 (154)
64 3qrl_A Transcription initiatio 45.1 47 0.0016 21.5 4.9 44 6-51 29-75 (140)
65 2bum_A Protocatechuate 3,4-dio 34.9 29 0.00098 23.9 2.8 26 25-50 109-139 (209)
66 3rls_A YAF9, protein AF-9 homo 34.7 73 0.0025 21.4 4.7 38 9-48 32-69 (175)
67 2jrw_A Cyclic extended PEP.1; 33.3 21 0.00073 16.0 1.3 17 40-56 4-20 (26)
68 1lvm_A Catalytic domain of the 23.9 79 0.0027 22.1 3.5 22 31-52 91-112 (229)
69 3mmg_A Nuclear inclusion prote 23.3 76 0.0026 22.4 3.3 22 31-52 83-104 (241)
70 2cu9_A Spcia1, histone chapero 20.5 1.9E+02 0.0066 19.0 5.3 35 11-45 39-86 (161)
No 1
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=2.7e-40 Score=223.65 Aligned_cols=102 Identities=23% Similarity=0.442 Sum_probs=97.2
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. ++|+|+++|+
T Consensus 26 ~~~~l~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~--~~W~p~~~i~ 100 (149)
T 2r0j_A 26 VPENYR--HFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK-LGRICLDILK--DKWSPALQIR 100 (149)
T ss_dssp ETTEEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-TCBBCCGGGT--TTCCTTSCHH
T ss_pred CCCccc--EEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCC-CCEEechhcC--CCCCCCCcHH
Confidence 457888 9999999999999999999999999999999999999999999999998 8999999997 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|++||.+|++++|+|++||.+|
T Consensus 101 ~vl~~i~~ll~~p~~~~p~n~~aa~~~ 127 (149)
T 2r0j_A 101 TVLLSIQALLSSPEPDDPLDSKVAEHF 127 (149)
T ss_dssp HHHHHHHHHHHSCCTTSCSSCHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence 999999999999999999999998643
No 2
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=1.8e-39 Score=224.25 Aligned_cols=104 Identities=28% Similarity=0.489 Sum_probs=85.7
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCC-----------
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL----------- 71 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~----------- 71 (109)
+++|++ +|+++|.||++||||||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|..
T Consensus 43 ~~~nl~--~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV~~-~G~IClsiL~~~~~d~~~~~~~ 119 (172)
T 2awf_A 43 DDNDLY--RWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK-NGDVCISILHEPGEDKYGYEKP 119 (172)
T ss_dssp STTCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCT-TCBBCCGGGSCC---------C
T ss_pred CCcccc--ccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCCCC-CCcEehhhcCCccccccccccc
Confidence 557999 9999999999999999999999999999999999999999999999998 89999999962
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 72 LVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 72 ~~~W~p~~~l~~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
.++|+|+++|++||++|++||.+|++++|+|++||++|
T Consensus 120 ~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~ 157 (172)
T 2awf_A 120 EERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEW 157 (172)
T ss_dssp TTSCCTTCCHHHHHHHHHHHHSCC--------------
T ss_pred CCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHH
Confidence 26899999999999999999999999999999999876
No 3
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=4.6e-40 Score=226.15 Aligned_cols=102 Identities=25% Similarity=0.581 Sum_probs=97.6
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. ++|+|+++|+
T Consensus 46 ~~~nl~--~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~-~G~ICL~iL~--~~WsP~~ti~ 120 (166)
T 2ayv_A 46 VGDDMF--HWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINS-QGAICLDILK--DQWSPALTIS 120 (166)
T ss_dssp CSSCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCT-TCBBCCGGGT--TTCCTTCCHH
T ss_pred cCCCcc--eeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCCC-CCeEEccccc--ccCCCCCcHH
Confidence 567899 9999999999999999999999999999999999999999999999997 8999999997 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|++||.+|++++|+|++||.+|
T Consensus 121 ~vL~sI~sll~~pn~~~Pln~~aa~l~ 147 (166)
T 2ayv_A 121 KVLLSISSLLTDPNPDDPLVPEIAHLY 147 (166)
T ss_dssp HHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHH
Confidence 999999999999999999999988643
No 4
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=6.1e-40 Score=223.39 Aligned_cols=102 Identities=30% Similarity=0.589 Sum_probs=98.0
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. ++|+|+++|+
T Consensus 34 ~~~~l~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~--~~W~p~~~i~ 108 (156)
T 2e2c_A 34 DGDNLF--KWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQ-SGNICLDILK--ENWTASYDVR 108 (156)
T ss_dssp SSSCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TCBBCCGGGT--TTCCTTCCHH
T ss_pred CCCCcc--EEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCcc-CceEECcccc--ccCCCCCcHH
Confidence 567899 9999999999999999999999999999999999999999999999998 9999999997 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|++||.+|++++|+|++||++|
T Consensus 109 ~vL~si~~ll~~pn~~~p~n~~aa~~~ 135 (156)
T 2e2c_A 109 TILLSLQSLLGEPNNASPLNAQAADMW 135 (156)
T ss_dssp HHHHHHHHHTTSCCCSSCSCHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHh
Confidence 999999999999999999999998754
No 5
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.7e-40 Score=224.82 Aligned_cols=102 Identities=22% Similarity=0.441 Sum_probs=95.6
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. ++|+|+++|+
T Consensus 30 ~~~~l~--~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~--~~W~p~~~i~ 104 (154)
T 2c2v_B 30 DESNAR--YFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK-LGRICLDILK--DKWSPALQIR 104 (154)
T ss_dssp CSSCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCT-TCBBCCHHHH--TSCCTTCCHH
T ss_pred CCCchh--eEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCcc-CCeEEchhcc--CCCCCCCcHH
Confidence 457898 9999999999999999999999999999999999999999999999997 8999999997 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|++||.+|++++|+|++||++|
T Consensus 105 ~vl~~i~~ll~~pn~~~p~n~~aa~~~ 131 (154)
T 2c2v_B 105 TVLLSIQALLSAPNPDDPLANDVAEQW 131 (154)
T ss_dssp HHHHHHHHHTTSCCCCCC--CHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 999999999999999999999998653
No 6
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=6.2e-40 Score=219.51 Aligned_cols=99 Identities=49% Similarity=0.953 Sum_probs=94.5
Q ss_pred CCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCee--eccCCCCCCCCCCCCCHHH
Q 033897 6 DIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV--EPKKFGLLVNWQREYTMED 83 (109)
Q Consensus 6 d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~i--c~~~l~~~~~W~p~~~l~~ 83 (109)
|++ +|+++|.||++||||||.|+++|.||++||++||+|+|.|++|||||+.++|.| |+++| ++|+|+++|++
T Consensus 38 nl~--~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~~G~i~~cL~~l---~~W~p~~~i~~ 112 (138)
T 1jat_B 38 TMT--KWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTL---RDWKRAYTMET 112 (138)
T ss_dssp TCC--EEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBCTTSHHH---HTCCTTCCHHH
T ss_pred cce--EEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccccCCEeCCCCEEeeecccC---CCCCCcCcHHH
Confidence 577 999999999999999999999999999999999999999999999999855999 89887 47999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 84 ILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 84 il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
||++|++||.+|++++++|++||++|
T Consensus 113 vl~~i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 113 LLLDLRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp HHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred HHHHHHHHHcCCCCCCCCCcchhhcC
Confidence 99999999999999999999999987
No 7
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=5.4e-40 Score=222.65 Aligned_cols=102 Identities=26% Similarity=0.558 Sum_probs=97.8
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. ++|+|+++|+
T Consensus 29 ~~~nl~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~-~G~iCl~iL~--~~W~p~~~i~ 103 (151)
T 4gpr_A 29 VGDDIF--HWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINK-NGVICLDILK--DQWSPALTLS 103 (151)
T ss_dssp SSSCTT--EEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TCBBCCGGGT--TTCCTTCCHH
T ss_pred cCCCce--EEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceECC-CCEEEccccc--CCCCCCCcHH
Confidence 457899 9999999999999999999999999999999999999999999999997 9999999997 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|+++|.+|++++|+|++||++|
T Consensus 104 ~vl~~i~~ll~~p~~~~p~n~~aa~~~ 130 (151)
T 4gpr_A 104 RVLLSISSLLTDPNPSDPLDPEVANVL 130 (151)
T ss_dssp HHHHHHHHHHHCCCTTSCSSHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHH
Confidence 999999999999999999999998653
No 8
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=4.4e-40 Score=225.81 Aligned_cols=104 Identities=22% Similarity=0.360 Sum_probs=97.6
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCC-----------
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL----------- 71 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~----------- 71 (109)
+++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|..
T Consensus 30 ~~~~l~--~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~-~G~iCl~iL~~~~~~~~~~~~~ 106 (165)
T 2ucz_A 30 SENNIF--IWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELA 106 (165)
T ss_dssp SSSCCS--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCT-TSBBCCGGGSCCCSCTTSTTTT
T ss_pred CCCCcc--EEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCCC-CCcEeehhhCCccccccccCCC
Confidence 457899 9999999999999999999999999999999999999999999999998 89999999931
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 72 LVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 72 ~~~W~p~~~l~~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
.++|+|+++|++||++|++||.+|++++|+|++||++|
T Consensus 107 ~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~ 144 (165)
T 2ucz_A 107 EERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILW 144 (165)
T ss_dssp TTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence 38999999999999999999999999999999998653
No 9
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=3e-40 Score=223.37 Aligned_cols=103 Identities=21% Similarity=0.407 Sum_probs=97.3
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+..+|.||+++|. ++|+|+++|+
T Consensus 27 ~~~~l~--~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~iL~--~~W~p~~~i~ 102 (149)
T 1fxt_A 27 SESDIH--HLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILK--NAWSPVITLK 102 (149)
T ss_dssp SSSCSS--EEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCSSSCCBCCHHHH--TSCCTTCCHH
T ss_pred CCCCce--EEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcCCCCeEeCCcCC--CCCCCCCcHH
Confidence 344888 999999999999999999999999999999999999999999999999668999999997 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|++||.+|++++|+|++||++|
T Consensus 103 ~vl~~i~~ll~~p~~~~p~n~~aa~~~ 129 (149)
T 1fxt_A 103 SALISLQALLQSPEPNDPQDAEVAQHY 129 (149)
T ss_dssp HHHHHHHHHHHSCCSSSCSSHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 999999999999999999999988653
No 10
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=2.8e-39 Score=220.31 Aligned_cols=98 Identities=44% Similarity=0.931 Sum_probs=94.0
Q ss_pred CCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCee---eccCCCCCCCCCCCCCHH
Q 033897 6 DIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV---EPKKFGLLVNWQREYTME 82 (109)
Q Consensus 6 d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~i---c~~~l~~~~~W~p~~~l~ 82 (109)
|++ +|+++|.||++||||||+|+++|.||++||++||+|+|.|++|||||+. +|.| |+++|+ +|+|+++|+
T Consensus 53 nl~--~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNV~~-~G~icisCL~iL~---~WsP~~ti~ 126 (156)
T 2q0v_A 53 TLS--NWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDN-CGRVIKNNLHILK---NWNRNYTIE 126 (156)
T ss_dssp TCC--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCT-TSBBCGGGSHHHH---TCCTTCCHH
T ss_pred cce--eeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccCCCcc-CCeEehhhccccc---CCCCcCcHH
Confidence 577 9999999999999999999999999999999999999999999999998 8999 788875 599999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|++||.+|++++++|++||++|
T Consensus 127 ~vL~sI~~ll~~Pn~~~p~n~~aa~~y 153 (156)
T 2q0v_A 127 TILISLRQEMLSSANKRLPQPNEGEVY 153 (156)
T ss_dssp HHHHHHHHHTTSTTTTTCCCCCTTCBC
T ss_pred HHHHHHHHHHhCCCCCCcCChHHHHHh
Confidence 999999999999999999999999987
No 11
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=8.4e-40 Score=222.53 Aligned_cols=102 Identities=23% Similarity=0.458 Sum_probs=97.3
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. ++|+|+++|+
T Consensus 30 ~~~~l~--~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~--~~W~p~~~i~ 104 (155)
T 1jat_A 30 HDDNLR--YFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR-LGRICLDVLK--TNWSPALQIR 104 (155)
T ss_dssp ETTEEE--EEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-TCCBCCGGGT--TTCCTTCCHH
T ss_pred CCCchh--EEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCC-CCEEEchhhc--cCCCCCCCHH
Confidence 457888 9999999999999999999999999999999999999999999999996 9999999997 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|++||.+|++++|+|.+||++|
T Consensus 105 ~vl~~i~~ll~~p~~~~p~n~~aa~~~ 131 (155)
T 1jat_A 105 TVLLSIQALLASPNPNDPLANDVAEDW 131 (155)
T ss_dssp HHHHHHHHHHHSCCTTSTTCCTTHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 999999999999999999999998653
No 12
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=1.3e-39 Score=223.27 Aligned_cols=104 Identities=21% Similarity=0.412 Sum_probs=97.6
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCC-----------
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL----------- 71 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~----------- 71 (109)
+++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|..
T Consensus 29 ~~~nl~--~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~~-~G~iCl~iL~~~~~~~~~~~~~ 105 (164)
T 3h8k_A 29 NEENFF--EWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESS 105 (164)
T ss_dssp STTCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCT-TSBBCCGGGSCSCSCCCSCCTT
T ss_pred CCCCcc--EEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCCC-CCcEeeecccCccccccccccc
Confidence 456899 9999999999999999999999999999999999999999999999997 99999999952
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 72 LVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 72 ~~~W~p~~~l~~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
.++|+|++||++||++|+++|.+|++++|+|++||.+|
T Consensus 106 ~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~ 143 (164)
T 3h8k_A 106 AERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMW 143 (164)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHH
T ss_pred ccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHH
Confidence 27899999999999999999999999999999998654
No 13
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=1.1e-39 Score=222.72 Aligned_cols=103 Identities=25% Similarity=0.410 Sum_probs=97.5
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+..+|.||+++|. ++|+|+++|+
T Consensus 36 ~~~~l~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G~iCl~iL~--~~W~p~~~i~ 111 (159)
T 2bep_A 36 VDENFT--ELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK--DQWAAAMTLR 111 (159)
T ss_dssp CSSSSS--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGT--TTCCTTCCHH
T ss_pred CCCchh--eEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccCCCCCCCEEeChhhh--ccCCCCCcHH
Confidence 456888 999999999999999999999999999999999999999999999999558999999997 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|++||.+|++++|+|++||++|
T Consensus 112 ~vl~~i~~ll~~p~~~~p~n~~aa~~~ 138 (159)
T 2bep_A 112 TVLLSLQALLAAAEPDDPQDAVVANQY 138 (159)
T ss_dssp HHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 999999999999999999999988653
No 14
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=1e-39 Score=224.26 Aligned_cols=101 Identities=27% Similarity=0.571 Sum_probs=97.1
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. ++|+|+++|+
T Consensus 44 ~~~nl~--~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~~-~G~ICl~iL~--~~W~P~~ti~ 118 (165)
T 2c4o_A 44 VGDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILR--SQWSPALTIS 118 (165)
T ss_dssp SSSCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCT-TCBBCCGGGT--TTCCTTCCHH
T ss_pred cCCCcc--eeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCCC-CCeEeehhhc--CCCCCcCcHH
Confidence 457899 9999999999999999999999999999999999999999999999997 9999999997 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTY 108 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~ 108 (109)
+||++|+++|.+|++++|+|++||++
T Consensus 119 ~vL~si~~ll~~pn~~~P~n~~aa~~ 144 (165)
T 2c4o_A 119 KVLLSICSLLCDPNPDDPLVPEIARI 144 (165)
T ss_dssp HHHHHHHHHHHSCCTTSCSSHHHHHH
T ss_pred HHHHHHHHHHhCCCCCccccHHHHHH
Confidence 99999999999999999999998764
No 15
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=6.5e-40 Score=225.99 Aligned_cols=102 Identities=28% Similarity=0.507 Sum_probs=97.1
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. +.|+|+++|+
T Consensus 29 ~~~nl~--~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~~-~G~ICl~iL~--~~WsP~~~i~ 103 (169)
T 1ayz_A 29 LPDNVM--VWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYA-NGEICLDILQ--NRWTPTYDVA 103 (169)
T ss_dssp ETTEEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-TSBBCCGGGT--TTCCTTCCHH
T ss_pred cCCccc--cceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCCC-CCeEeehhhc--cCCCCcCcHH
Confidence 356788 9999999999999999999999999999999999999999999999998 9999999997 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|++||.+|++++|+|++||++|
T Consensus 104 ~vL~si~~ll~~Pn~~~P~n~~aa~~~ 130 (169)
T 1ayz_A 104 SILTSIQSLFNDPNPASPANVEAATLF 130 (169)
T ss_dssp HHHHHHHHHHTCCCCSSCSSHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHH
Confidence 999999999999999999999988653
No 16
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=7.1e-40 Score=221.79 Aligned_cols=101 Identities=27% Similarity=0.560 Sum_probs=96.6
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. ++|+|+++|+
T Consensus 29 ~~~~l~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~--~~W~p~~~i~ 103 (150)
T 1z2u_A 29 VGDDLF--HWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSICLDILR--SQWSPALTIS 103 (150)
T ss_dssp ETTEEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TCBBCCGGGT--TTCCTTCCHH
T ss_pred CCCcce--EEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCC-CCeEeecccc--CCCCCCCCHH
Confidence 457888 9999999999999999999999999999999999999999999999997 9999999997 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTY 108 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~ 108 (109)
+||++|++||.+|++++|+|++||.+
T Consensus 104 ~vl~~i~~ll~~pn~~~p~n~~aa~~ 129 (150)
T 1z2u_A 104 KVLLSICSLLCDPNPDDPLVPEIARI 129 (150)
T ss_dssp HHHHHHHHHHHSCCTTSCSCHHHHHH
T ss_pred HHHHHHHHHhhCCCCCCccCHHHHHH
Confidence 99999999999999999999998764
No 17
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=1.3e-39 Score=222.01 Aligned_cols=102 Identities=23% Similarity=0.438 Sum_probs=95.8
Q ss_pred CCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHHH
Q 033897 5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDI 84 (109)
Q Consensus 5 ~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~i 84 (109)
+|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|...++|+|+++|++|
T Consensus 36 ~nl~--~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~~~~~W~p~~~i~~v 112 (157)
T 2gjd_A 36 MDLQ--KWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYP-SGTICLSILNEDQDWRPAITLKQI 112 (157)
T ss_dssp EEEE--EEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCCCTTBCT-TSBBCCGGGCTTTTCCTTCCHHHH
T ss_pred Cccc--EEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCccCCCCC-CCcEeeecccCCCCCCCCCcHHHH
Confidence 4777 9999999999999999999999999999999999999999999999997 999999999832389999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 85 LTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 85 l~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
|++|+++|.+|++++|+|++||++|
T Consensus 113 l~~i~~ll~~p~~~~p~n~~aa~~~ 137 (157)
T 2gjd_A 113 VLGVQDLLDSPNPNSPAQEPAWRSF 137 (157)
T ss_dssp HHHHHHHHTSCCTTCCCCHHHHHHH
T ss_pred HHHHHHHHhCCCCCCccCHHHHHHH
Confidence 9999999999999999999998653
No 18
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-39 Score=223.40 Aligned_cols=101 Identities=26% Similarity=0.455 Sum_probs=95.7
Q ss_pred CCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHHHH
Q 033897 6 DIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDIL 85 (109)
Q Consensus 6 d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~il 85 (109)
|++ +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|...++|+|+++|++||
T Consensus 43 nl~--~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~HPnV~~-~G~iCl~iL~~~~~W~p~~ti~~vL 119 (163)
T 3rcz_B 43 DLM--NWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYP-SGTVCLSILNEEEGWKPAITIKQIL 119 (163)
T ss_dssp EEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCT-TSBBCCGGGCTTTTCCTTCCHHHHH
T ss_pred Ccc--EEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCccCCCCC-CCcEeccccCCCCCcCCcCcHHHHH
Confidence 677 9999999999999999999999999999999999999999999999997 9999999998445799999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 86 TQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 86 ~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
++|+++|.+|++++|+|++||++|
T Consensus 120 ~~i~~ll~~P~~~~p~n~~aa~~~ 143 (163)
T 3rcz_B 120 LGIQDLLDDPNIASPAQTEAYTMF 143 (163)
T ss_dssp HHHHHHHTSCCTTSCSCHHHHHHH
T ss_pred HHHHHHHhCCCCCCccCHHHHHHH
Confidence 999999999999999999998653
No 19
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1e-39 Score=226.82 Aligned_cols=102 Identities=24% Similarity=0.472 Sum_probs=97.7
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. +.|+|+++|+
T Consensus 55 ~~~nl~--~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~-~G~ICL~iL~--~~WsP~~ti~ 129 (179)
T 1i7k_A 55 ESDNLF--KWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDT-QGNISLDILK--EKWSALYDVR 129 (179)
T ss_dssp ETTEEE--EEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCT-TCBBCCGGGT--TTCCTTCCHH
T ss_pred cCCccc--ccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCcccc-CCeEEcccCc--CcCCCCCCHH
Confidence 456888 9999999999999999999999999999999999999999999999998 8999999997 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|++||.+|++++|+|++||.+|
T Consensus 130 ~vL~sI~sll~~Pn~~~Pln~~aa~l~ 156 (179)
T 1i7k_A 130 TILLSIQSLLGEPNIDSPLNTHAAELW 156 (179)
T ss_dssp HHHHHHHHHHHSCCTTSCSCHHHHHHT
T ss_pred HHHHHHHHHHhCCCCcchhhHHHHHHh
Confidence 999999999999999999999998765
No 20
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=1e-39 Score=221.45 Aligned_cols=102 Identities=26% Similarity=0.560 Sum_probs=97.2
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. ++|+|+++|+
T Consensus 29 ~~~~l~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~--~~W~p~~~i~ 103 (152)
T 2aak_A 29 QDNNIM--LWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQ--NQWSPIYDVA 103 (152)
T ss_dssp ETTEEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-TSBBCCGGGT--TSCCTTCCHH
T ss_pred CCCCcc--EEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCCC-CCEEechhhc--CCCCCCCcHH
Confidence 467888 9999999999999999999999999999999999999999999999998 9999999997 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||.+|+++|.+|++++|+|++|+.+|
T Consensus 104 ~vl~~i~~ll~~p~~~~p~n~~aa~~~ 130 (152)
T 2aak_A 104 AILTSIQSLLCDPNPNSPANSEAARMY 130 (152)
T ss_dssp HHHHHHHHHHTSCCTTSCSSHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCccccHHHHHHH
Confidence 999999999999999999999988643
No 21
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=2.4e-39 Score=225.54 Aligned_cols=105 Identities=25% Similarity=0.428 Sum_probs=97.8
Q ss_pred CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCC----------
Q 033897 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL---------- 71 (109)
Q Consensus 2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~---------- 71 (109)
.+++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|..
T Consensus 32 ~~~~nl~--~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~-~G~iClsiL~~~~~~~~~~~~ 108 (183)
T 3rz3_A 32 VDEGDLY--NWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGEL 108 (183)
T ss_dssp CTTCCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBCT-TSBBCCTTC------------
T ss_pred cCccchh--heeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCCC-CCcEehhhcCccccccccccc
Confidence 5778999 9999999999999999999999999999999999999999999999998 99999999952
Q ss_pred -CCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 72 -LVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 72 -~~~W~p~~~l~~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
.++|+|++||++||++|++||.+||+++|+|.+|+.+|
T Consensus 109 ~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~ 147 (183)
T 3rz3_A 109 PSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 147 (183)
T ss_dssp --CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHH
T ss_pred ccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 27899999999999999999999999999999997643
No 22
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=8.6e-40 Score=223.13 Aligned_cols=102 Identities=24% Similarity=0.451 Sum_probs=97.8
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. ++|+|+++|+
T Consensus 38 ~~~~l~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~--~~W~p~~~i~ 112 (158)
T 1zdn_A 38 NEEDLT--DLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGA-NGEICVNVLK--RDWTAELGIR 112 (158)
T ss_dssp CSSCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-TSBBCHHHHT--TTCCTTCCHH
T ss_pred CCCChh--heeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCCC-CCEEehhhcC--CCCCCCCcHH
Confidence 568899 9999999999999999999999999999999999999999999999998 8999999997 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|+++|.+|++++|+|++||++|
T Consensus 113 ~vL~~i~~ll~~pn~~~p~n~~aa~~~ 139 (158)
T 1zdn_A 113 HVLLTIKCLLIHPNPESALNEEAGRLL 139 (158)
T ss_dssp HHHHHHHHHHHSCCGGGCSSHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 999999999999999999999998653
No 23
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.2e-39 Score=221.55 Aligned_cols=102 Identities=17% Similarity=0.339 Sum_probs=97.5
Q ss_pred CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCH
Q 033897 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM 81 (109)
Q Consensus 2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l 81 (109)
++++|++ +|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. ++|+|+++|
T Consensus 29 ~~~~~l~--~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~--~~W~p~~~i 102 (160)
T 1y8x_A 29 SDPDDLL--NFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL-EGNVCLNILR--EDWKPVLTI 102 (160)
T ss_dssp SSTTCTT--EEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-TCBBCCGGGT--TTCCTTCCH
T ss_pred ccCCccc--eEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCCC-CCeEEcccch--hhccCCCCH
Confidence 5788999 999988 999999999999999999999999999999999999999998 8999999997 899999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 82 EDILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 82 ~~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
++||++|++||.+|++++|+|++||++|
T Consensus 103 ~~vL~~i~~ll~~Pn~~~p~n~~aa~~~ 130 (160)
T 1y8x_A 103 NSIIYGLQYLFLEPNPEDPLNKEAAEVL 130 (160)
T ss_dssp HHHHHHHHHHHHSCCCSSCSCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence 9999999999999999999999998653
No 24
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.1e-39 Score=222.48 Aligned_cols=104 Identities=22% Similarity=0.418 Sum_probs=97.7
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCC--CCCCCCCC
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLL--VNWQREYT 80 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~--~~W~p~~~ 80 (109)
+++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|... ++|+|+++
T Consensus 29 ~~~~l~--~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~-~G~iCl~iL~~~~~~~W~p~~~ 105 (169)
T 1yh2_A 29 DKDQMD--DLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS-AGRICLDVLKLPPKGAWRPSLN 105 (169)
T ss_dssp SSSCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TCBBCCGGGSCTTTSCCCTTSC
T ss_pred CCCchh--eEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCCc-CCeEecccccCCcccCCCCCCc
Confidence 567899 9999999999999999999999999999999999999999999999996 899999998622 78999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 81 MEDILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 81 l~~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
|++||++|++||.+|++++|+|.+||++|
T Consensus 106 i~~vL~si~~ll~~p~~~~p~n~~aa~~~ 134 (169)
T 1yh2_A 106 IATVLTSIQLLMSEPNPDDPLMADISSEF 134 (169)
T ss_dssp HHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchHhHHHHHHH
Confidence 99999999999999999999999988643
No 25
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=1.6e-38 Score=217.28 Aligned_cols=103 Identities=41% Similarity=0.794 Sum_probs=95.1
Q ss_pred CCCC--CceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCC
Q 033897 3 DGDD--IYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYT 80 (109)
Q Consensus 3 d~~d--~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~ 80 (109)
+++| ++ +|+++|.||++||||||.|+++|.||++||++||+|+|.|++|||||+..+|.||+++|...++|+|+++
T Consensus 52 ~~~d~~l~--~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~t 129 (160)
T 2a4d_A 52 DDEDMTLT--RWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYS 129 (160)
T ss_dssp STTCTTCC--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCBBCGGGSHHHHTCCTTCC
T ss_pred CCccccce--eeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCCEECCCCEEehhhcCCccCCCccCc
Confidence 4555 66 9999999999999999999999999999999999999999999999994489999999853378999999
Q ss_pred HHHHHHHHHHHhc-CCCCCCCCCCCCCC
Q 033897 81 MEDILTQLKKEMA-APHNRKLVQPPEGT 107 (109)
Q Consensus 81 l~~il~~i~~ll~-~p~~~~~~~~~a~~ 107 (109)
|++||++|++||. +||+++|+|+|||.
T Consensus 130 i~~vL~sI~~ll~~~pn~~~P~n~eaa~ 157 (160)
T 2a4d_A 130 IKVVLQELRRLMMSKENMKLPQPPEGQC 157 (160)
T ss_dssp HHHHHHHHHHHHTSTTTTTCCCCCTTCB
T ss_pred HHHHHHHHHHHHccCCCCCCCCChhhcc
Confidence 9999999999995 69999999999985
No 26
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=4.1e-39 Score=227.14 Aligned_cols=103 Identities=25% Similarity=0.410 Sum_probs=97.8
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
.++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+..+|.||+++|. ++|+|+++|+
T Consensus 33 ~~~nl~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~~G~iCl~iL~--~~W~p~~~i~ 108 (201)
T 3k9o_A 33 VDENFT--ELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK--DQWAAAMTLR 108 (201)
T ss_dssp CSTTSS--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGT--TTCCTTCCHH
T ss_pred CCCCcc--EEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCCCcCCCCeeeCcccc--cCCCCCCCHH
Confidence 457888 999999999999999999999999999999999999999999999999558999999997 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|+++|.+|++++|+|++||++|
T Consensus 109 ~vL~~i~~ll~~p~p~~p~n~~aa~~~ 135 (201)
T 3k9o_A 109 TVLLSLQALLAAAEPDDPQDAVVANQY 135 (201)
T ss_dssp HHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHH
Confidence 999999999999999999999998653
No 27
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=2.7e-39 Score=226.93 Aligned_cols=103 Identities=25% Similarity=0.470 Sum_probs=97.2
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+..+|.||+++|. ++|+|+++|+
T Consensus 70 ~~~nl~--~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~--~~WsP~~ti~ 145 (193)
T 2f4z_A 70 VGGDIH--RWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILK--HEWSPALTIR 145 (193)
T ss_dssp ETTEEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCCGGGT--TTCCTTSCHH
T ss_pred cCCCcc--eEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEEEecCCccCCCcCCCCEEECcccc--ccCCCCCCHH
Confidence 356787 999999999999999999999999999999999999999999999999558999999997 8899999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|++||.+|++++|+|++||++|
T Consensus 146 ~vL~sI~sll~~pnp~~P~n~~aa~l~ 172 (193)
T 2f4z_A 146 TALLSIQAMLADPVPTDPQDAEVAKMM 172 (193)
T ss_dssp HHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 999999999999999999999998654
No 28
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.4e-39 Score=224.37 Aligned_cols=105 Identities=24% Similarity=0.387 Sum_probs=97.3
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++||||||+|+++|.||++||++||+|+|.|++|||||+..+|.||+++|...++|+|+++|+
T Consensus 48 ~~~nl~--~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~~~WsP~~ti~ 125 (169)
T 1yrv_A 48 VSEDMM--EWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLS 125 (169)
T ss_dssp CSTTSC--EEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTTTCCBCCHHHHCGGGCCTTCCHH
T ss_pred cCCccc--cceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCcccCCCCeEeehhhcCCcCCCCcCCHH
Confidence 467898 999999999999999999999999999999999999999999999993349999999986336899999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|++||.+|++++|+|++||++|
T Consensus 126 ~vL~sI~sll~~Pn~~~Pln~eaa~l~ 152 (169)
T 1yrv_A 126 SILLALQVMLSNPVLENPVNLEAARIL 152 (169)
T ss_dssp HHHHHHHHHHTSCCTTSCSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence 999999999999999999999998653
No 29
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=4.3e-39 Score=220.25 Aligned_cols=103 Identities=22% Similarity=0.447 Sum_probs=96.5
Q ss_pred CCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHH
Q 033897 4 GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMED 83 (109)
Q Consensus 4 ~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~ 83 (109)
++|++ +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|...++|+|+++|++
T Consensus 38 ~~nl~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~~~~~W~p~~~i~~ 114 (161)
T 2grr_A 38 TMNLM--NWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSILEEDKDWRPAITIKQ 114 (161)
T ss_dssp CEEEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCSTTBCT-TSBBCCGGGCTTTTCCTTCCHHH
T ss_pred CCCcc--EEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCcccCCCCC-CCeEeehhcCCCCCcCCCCcHHH
Confidence 46777 9999999999999999999999999999999999999999999999997 99999999973348999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 84 ILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 84 il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
||++|++||.+|++++|+|++|+.+|
T Consensus 115 vl~~i~~ll~~p~~~~p~n~~aa~~~ 140 (161)
T 2grr_A 115 ILLGIQELLNEPNIQSPAQAEAYTIY 140 (161)
T ss_dssp HHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCccCHHHHHHH
Confidence 99999999999999999999988643
No 30
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.9e-39 Score=223.53 Aligned_cols=102 Identities=17% Similarity=0.349 Sum_probs=97.6
Q ss_pred CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCH
Q 033897 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTM 81 (109)
Q Consensus 2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l 81 (109)
++++|++ +|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. ++|+|+++|
T Consensus 49 p~~~nl~--~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~~-~G~iCl~iL~--~~W~p~~~i 122 (180)
T 2nvu_C 49 SDPDDLL--NFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL-EGNVALNILR--EDWKPVLTI 122 (180)
T ss_dssp SSTTCTT--EEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-TSBBCCGGGT--TSCCTTCCH
T ss_pred ccccccc--ceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCCC-CCcEEccccc--ccCCCCCCH
Confidence 5788999 999988 999999999999999999999999999999999999999998 8999999997 899999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 82 EDILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 82 ~~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
++||++|+++|.+|++++|+|++||.+|
T Consensus 123 ~~vL~si~~ll~~Pn~~~p~n~~aa~~~ 150 (180)
T 2nvu_C 123 NSIIYGLQYLFLEPNPEDPLNKEAAEVL 150 (180)
T ss_dssp HHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence 9999999999999999999999998653
No 31
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=9.7e-39 Score=220.61 Aligned_cols=104 Identities=19% Similarity=0.364 Sum_probs=97.7
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCcccccc-ccccCCCCCCCCeeeccCCCCCCCCCCCCCH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS-RINMTCVNHETGVVEPKKFGLLVNWQREYTM 81 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t-~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l 81 (109)
+++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.| ++|||||+..+|.||+++|. .++|+|+++|
T Consensus 43 ~~~nl~--~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~~i~HPni~~~~G~iCl~iL~-~~~W~p~~~i 119 (172)
T 2y9m_A 43 DETDLS--KWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK-PEEWTPVWDL 119 (172)
T ss_dssp STTCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECTTSCCCTTEETTTTEECCGGGS-TTTCCTTCCH
T ss_pred CCCchh--EEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEEeeCCeecCCCcCCCCEEeccccC-CCCCCCcCcH
Confidence 678999 9999999999999999999999999999999999999999 99999996448999999995 3799999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 82 EDILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 82 ~~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
++||++|++||.+|++++|+|++||++|
T Consensus 120 ~~vL~si~~ll~~p~~~~p~n~~aa~~~ 147 (172)
T 2y9m_A 120 LHCVHAVWRLLREPVCDSPLDVDIGNII 147 (172)
T ss_dssp HHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence 9999999999999999999999998653
No 32
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=1.9e-39 Score=231.06 Aligned_cols=103 Identities=21% Similarity=0.486 Sum_probs=97.5
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+..+|.||+++|. ++|+|+++|+
T Consensus 48 ~~~nl~--~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~--~~WsP~~ti~ 123 (216)
T 2pwq_A 48 KDSNFF--EWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLK--NEWSPALTIR 123 (216)
T ss_dssp CSSCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCHHHH--HHCCTTCCHH
T ss_pred cCCccc--eeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCCCCEEEchhhc--ccCCCCCcHH
Confidence 457888 999999999999999999999999999999999999999999999999558999999997 8899999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|++||.+|++++|+|++||++|
T Consensus 124 ~VL~sI~sLL~~Pnp~dPln~eaa~~~ 150 (216)
T 2pwq_A 124 TALLSIQALLSDPQPDDPQDAEVAKMY 150 (216)
T ss_dssp HHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 999999999999999999999988653
No 33
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=1.1e-38 Score=224.08 Aligned_cols=102 Identities=29% Similarity=0.559 Sum_probs=97.6
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. ++|+|+++|+
T Consensus 73 ~~~nl~--~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~-~G~ICL~iL~--~~WsP~~ti~ 147 (194)
T 3bzh_A 73 KGDNIY--EWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINS-QGVICLDILK--DNWSPALTIS 147 (194)
T ss_dssp SSSCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT-TCBBCCGGGT--TTCCTTCCHH
T ss_pred ccCccc--cceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceECC-CCceechhhh--ccCCCcCcHH
Confidence 567899 9999999999999999999999999999999999999999999999997 8999999997 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|++||.+|++++|+|.+|+.+|
T Consensus 148 ~vL~sI~~ll~~pnp~~Pln~~aa~l~ 174 (194)
T 3bzh_A 148 KVLLSICSLLTDCNPADPLVGSIATQY 174 (194)
T ss_dssp HHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccchhHHHHHHH
Confidence 999999999999999999999987643
No 34
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=2.4e-39 Score=219.80 Aligned_cols=103 Identities=18% Similarity=0.395 Sum_probs=96.6
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+..+|.||+++|. ++|+|+++|+
T Consensus 24 ~~~~l~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G~iCl~il~--~~W~p~~~i~ 99 (152)
T 2onu_A 24 NNGSTQ--DFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVIN--QTWTPLYSLV 99 (152)
T ss_dssp ETTEEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTCBBCHHHHH--HHCCTTCCHH
T ss_pred ccCccc--eEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCCeEeccccc--ccCCCCCCHH
Confidence 357888 999999999999999999999999999999999999999999999999558999999997 8999999999
Q ss_pred HHHHH-HHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQ-LKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~-i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++ |++||.+|++++|+|++|+++|
T Consensus 100 ~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~ 127 (152)
T 2onu_A 100 NVFEVFLPQLLTYPNPSDPLNSDAASLL 127 (152)
T ss_dssp HHHHTHHHHHHHSCCCSSCSSHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 99999 6899999999999999988643
No 35
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=4.3e-39 Score=229.11 Aligned_cols=103 Identities=21% Similarity=0.407 Sum_probs=96.9
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
++++++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+..+|.||+++|. ++|+|++||+
T Consensus 28 ~~~~l~--~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~--~~WsP~~ti~ 103 (215)
T 1tte_A 28 SESDIH--HLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILR--NAWSPVITLK 103 (215)
T ss_dssp SSSSCC--EEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSCSSSSCCCSSTTT--CCSCTTCCHH
T ss_pred CCcccc--ccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCcCCCCEEECccCC--CCCCCcCcHH
Confidence 445677 999999999999999999999999999999999999999999999999768999999997 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|++||.+|++++|+|++|+++|
T Consensus 104 ~VL~sI~sLL~~Pnp~~Pln~eaa~~~ 130 (215)
T 1tte_A 104 SALISLQALLQSPEPNDPQDAEVAQHY 130 (215)
T ss_dssp HHHHHHHHHHTSCCCSSCSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence 999999999999999999999987643
No 36
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=4.4e-38 Score=217.05 Aligned_cols=103 Identities=41% Similarity=0.799 Sum_probs=94.9
Q ss_pred CCCC--CceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCC
Q 033897 3 DGDD--IYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYT 80 (109)
Q Consensus 3 d~~d--~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~ 80 (109)
+++| ++ +|+++|.||++||||||.|+++|.||++||++||+|+|.|++|||||+..+|.||+++|...++|+|++|
T Consensus 62 ~~~d~nl~--~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~t 139 (170)
T 2hlw_A 62 DDEDMTLT--RWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYS 139 (170)
T ss_dssp STTCSSCC--BEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSSBCSSSCBBCTTTCHHHHTCCSSCC
T ss_pred Ccccccce--eeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCCEeCCCCEEEhhhcCCCCCCCccCc
Confidence 4555 77 9999999999999999999999999999999999999999999999994489999999853378999999
Q ss_pred HHHHHHHHHHHhcC-CCCCCCCCCCCCC
Q 033897 81 MEDILTQLKKEMAA-PHNRKLVQPPEGT 107 (109)
Q Consensus 81 l~~il~~i~~ll~~-p~~~~~~~~~a~~ 107 (109)
|++||++|++||.+ ||+++|+|+||+.
T Consensus 140 i~~vL~sI~~ll~~~pn~~~P~n~eaa~ 167 (170)
T 2hlw_A 140 IKVVLQELRRLMMSKENMKLPQPPEGQC 167 (170)
T ss_dssp HHHHHHHHHHHHHSTTTSSSCCCSSCCB
T ss_pred HHHHHHHHHHHHccCCCCCCCCCccccc
Confidence 99999999999974 9999999999985
No 37
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=1.8e-38 Score=215.95 Aligned_cols=102 Identities=19% Similarity=0.395 Sum_probs=96.9
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. .++|+|+++|+
T Consensus 30 ~~~~l~--~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~-~G~iCl~iL~-~~~W~p~~~i~ 104 (155)
T 1wzv_A 30 DDANVL--VWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE-NGQICLPIIS-SENWKPCTKTC 104 (155)
T ss_dssp CSSCTT--EEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-TCBCCCGGGC-TTTCCTTCCHH
T ss_pred CCCchh--eEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCCC-CCeEeecCCC-ccCCCCCCcHH
Confidence 678999 9999999 99999999999999999999999999999999999999998 9999999993 38999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|+++|.+|++++|+|++||.+|
T Consensus 105 ~vl~~i~~ll~~p~~~~p~n~~aa~~~ 131 (155)
T 1wzv_A 105 QVLEALNVLVNRPNIREPLRMDLADLL 131 (155)
T ss_dssp HHHHHHHHHHHSCCSSSCSSHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 999999999999999999999988653
No 38
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=5.1e-38 Score=228.11 Aligned_cols=103 Identities=25% Similarity=0.410 Sum_probs=97.9
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+..+|.||+++|. ++|+|+++|+
T Consensus 85 ~~dnl~--~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~~G~ICL~iL~--~~WsP~~ti~ 160 (253)
T 3e46_A 85 VDENFT--ELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK--DQWAAAMTLR 160 (253)
T ss_dssp CSTTSS--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCBBCCGGGT--TCCCTTCCHH
T ss_pred CCCccc--EEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCCccCCCCeeeccccc--CCCCCCCCHH
Confidence 457888 999999999999999999999999999999999999999999999999558999999997 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|+++|.+|++++|+|++||++|
T Consensus 161 ~vL~sI~~ll~~pnp~~Pln~eaa~l~ 187 (253)
T 3e46_A 161 TVLLSLQALLAAAEPDDPQDAVVANQY 187 (253)
T ss_dssp HHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCChhhHHHHHHH
Confidence 999999999999999999999998654
No 39
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=6.7e-38 Score=212.87 Aligned_cols=101 Identities=19% Similarity=0.446 Sum_probs=95.9
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. .++|+|+++|+
T Consensus 28 ~~~~l~--~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~-~G~iCl~iL~-~~~W~p~~~i~ 102 (154)
T 1c4z_D 28 DEANLL--TWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE-KGQVCLPVIS-AENWKPATKTD 102 (154)
T ss_dssp SCSSSS--EEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-TCBBCCTTTS-SSSCCTTCCHH
T ss_pred CCCchh--eEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCC-CCEEECCCCC-CCCCCCCCcHH
Confidence 678899 9999998 99999999999999999999999999999999999999997 9999999995 37899999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTY 108 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~ 108 (109)
+||++|++||.+|++++|+|++||++
T Consensus 103 ~vl~~i~~ll~~p~~~~p~n~~aa~~ 128 (154)
T 1c4z_D 103 QVIQSLIALVNDPQPEHPLRADLAEE 128 (154)
T ss_dssp HHHHHHHHHHHSCCCSSCSCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCchhhHHHHHH
Confidence 99999999999999999999998764
No 40
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=1.1e-38 Score=220.20 Aligned_cols=103 Identities=22% Similarity=0.371 Sum_probs=97.0
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+..+|.||+++|. ++|+|+++|+
T Consensus 33 ~~~~l~--~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~iCl~iL~--~~W~p~~~i~ 108 (171)
T 1yf9_A 33 PSDTVA--EFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVIN--QTWTPMYQLE 108 (171)
T ss_dssp ECSSTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHH--HHCCTTCCTH
T ss_pred CCCCce--EEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCeEeccccc--cCCCCCCcHH
Confidence 467899 999999999999999999999999999999999999999999999999548999999997 8999999999
Q ss_pred HHHHHH-HHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQL-KKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i-~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++| ++||.+|++++|+|++|+++|
T Consensus 109 ~vL~sil~~ll~~Pn~~~p~n~~aa~~~ 136 (171)
T 1yf9_A 109 NIFDVFLPQLLRYPNPSDPLNVQAAHLL 136 (171)
T ss_dssp HHHHTHHHHHHHSCCSSCCSCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 999997 799999999999999988653
No 41
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=5.7e-37 Score=202.11 Aligned_cols=93 Identities=24% Similarity=0.468 Sum_probs=83.4
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCcccccccc-ccCCCCCCCCeeeccCCCCCCCCCCCCCH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI-NMTCVNHETGVVEPKKFGLLVNWQREYTM 81 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l 81 (109)
+++|++ +|+++|.||++||||||.|+++|.||++||++||+|+|.|++ +||||+. +|.||+++|. ++|+|++||
T Consensus 31 ~~~~l~--~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~-~G~iCl~iL~--~~W~P~~~i 105 (125)
T 2fo3_A 31 HPNNIR--IWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYS-NGDICLSLLG--DDYNPSLSI 105 (125)
T ss_dssp CTTCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCT-TSBBCCGGGT--TTCCTTCCH
T ss_pred Ccchhh--hhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCCC-CCEEEchhcC--CCCCCCCcH
Confidence 568899 999999999999999999999999999999999999999997 9999997 9999999997 899999999
Q ss_pred HHHHHHHHHHhcCCCCCCC
Q 033897 82 EDILTQLKKEMAAPHNRKL 100 (109)
Q Consensus 82 ~~il~~i~~ll~~p~~~~~ 100 (109)
++||++|++||.+|+.++.
T Consensus 106 ~~vl~si~~ll~~p~~~~~ 124 (125)
T 2fo3_A 106 SGLVLSIISMLSSAKEKKL 124 (125)
T ss_dssp HHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhCcccccC
Confidence 9999999999999998763
No 42
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=7.2e-38 Score=215.15 Aligned_cols=104 Identities=15% Similarity=0.217 Sum_probs=96.3
Q ss_pred CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCC----CCCCCC
Q 033897 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL----LVNWQR 77 (109)
Q Consensus 2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~----~~~W~p 77 (109)
++++|++ .|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|.. .++|+|
T Consensus 39 ~~~~~l~--~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~-~G~iCl~iL~~~~~~~~~W~p 114 (167)
T 3fn1_B 39 PDPNKLH--CFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE-TGEICLSLLREHSIDGTGWAP 114 (167)
T ss_dssp SSSSCTT--EEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSBCT-TCCBCCGGGSBCSSSTTSBCT
T ss_pred CCCCcce--eEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCCCC-CCEEechhhccCCCCCCCCCC
Confidence 4678898 999988 999999999999999999999999999999999999999997 99999999972 138999
Q ss_pred CCCHHHHHHHHHHHhcC-CCCCCCCCCCCCCCC
Q 033897 78 EYTMEDILTQLKKEMAA-PHNRKLVQPPEGTYF 109 (109)
Q Consensus 78 ~~~l~~il~~i~~ll~~-p~~~~~~~~~a~~~~ 109 (109)
+++|++||++|++||.+ |++++|+|++|+.+|
T Consensus 115 ~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~ 147 (167)
T 3fn1_B 115 TRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHH 147 (167)
T ss_dssp TCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHH
Confidence 99999999999999999 699999999998653
No 43
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=1.8e-37 Score=217.20 Aligned_cols=104 Identities=16% Similarity=0.219 Sum_probs=98.2
Q ss_pred CCCCCCcee-EEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCC
Q 033897 2 DDGDDIYMR-SWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYT 80 (109)
Q Consensus 2 ~d~~d~~~~-~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~ 80 (109)
++++|++++ +|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. ++|+|+++
T Consensus 55 p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~-~G~iCl~iL~--~~W~p~~~ 130 (190)
T 3o2u_A 55 PDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDL-KGNVCLNILR--EDWSPALD 130 (190)
T ss_dssp TTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCCCTTBCT-TSBBCCGGGT--TTCCTTCC
T ss_pred CCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcccCCCCC-CCeEechhcc--CCCCCCCC
Confidence 677888876 9999997 88899999999999999999999999999999999999997 9999999997 99999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 81 MEDILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 81 l~~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
|++||++|+++|.+|++++|+|++||.+|
T Consensus 131 i~~vL~~i~~ll~~pn~~~pln~~aa~~~ 159 (190)
T 3o2u_A 131 LQSIITGLLFLFLEPNPNDPLNKDAAKLL 159 (190)
T ss_dssp HHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcchhHHHHHHH
Confidence 99999999999999999999999998653
No 44
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=220.11 Aligned_cols=101 Identities=20% Similarity=0.414 Sum_probs=96.0
Q ss_pred CCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHHH
Q 033897 5 DDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDI 84 (109)
Q Consensus 5 ~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~i 84 (109)
+|++ +|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+..+|.||+++|. ++|+|+++|++|
T Consensus 48 ddl~--~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~ICL~iL~--~~WsP~~ti~~i 123 (179)
T 2z5d_A 48 GGLN--EFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVIN--QTWTALYDLTNI 123 (179)
T ss_dssp EETT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCBBCHHHHH--HHCCTTCCTTHH
T ss_pred CCCc--eeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCeEeccccc--cCCCCCCCHHHH
Confidence 4677 999999999999999999999999999999999999999999999999768999999997 899999999999
Q ss_pred HHH-HHHHhcCCCCCCCCCCCCCCCC
Q 033897 85 LTQ-LKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 85 l~~-i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
|++ |++||.+|++++|+|++||++|
T Consensus 124 L~s~I~~Ll~~Pn~~~p~n~eaa~~~ 149 (179)
T 2z5d_A 124 FESFLPQLLAYPNPIDPLNGDAAAMY 149 (179)
T ss_dssp HHTHHHHHHHSCCCSSCSCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCccCHHHHHHH
Confidence 999 9999999999999999998653
No 45
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=4.7e-36 Score=200.30 Aligned_cols=91 Identities=20% Similarity=0.437 Sum_probs=86.6
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCcccccccc-ccCCCCCCCCeeeccCCCCCCCCCCCCCH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI-NMTCVNHETGVVEPKKFGLLVNWQREYTM 81 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l 81 (109)
+++|++ +|+++|.||++||||||.|+++|.||++||++||+|+|.|++ +||||+. +|.||+++|. ++|+|+++|
T Consensus 45 ~~~nl~--~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~-~G~ICl~iL~--~~WsP~~ti 119 (136)
T 2h2y_A 45 HPSNIR--IWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYS-NGDICLSVLG--DDYNPSLSI 119 (136)
T ss_dssp CTTCTT--EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTBCT-TCCBCCGGGT--TTCCTTCCH
T ss_pred cccccc--ccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcCCC-CCEEECcccc--CCCCCCCcH
Confidence 467899 999999999999999999999999999999999999999997 9999997 9999999997 899999999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 033897 82 EDILTQLKKEMAAPHNR 98 (109)
Q Consensus 82 ~~il~~i~~ll~~p~~~ 98 (109)
++||++|++||.+|+.+
T Consensus 120 ~~vL~si~sll~~p~~k 136 (136)
T 2h2y_A 120 SGLILSIISMLSSAKEK 136 (136)
T ss_dssp HHHHHHHHHHHSSSCC-
T ss_pred HHHHHHHHHHHhCcCcC
Confidence 99999999999998763
No 46
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.1e-35 Score=195.82 Aligned_cols=87 Identities=18% Similarity=0.322 Sum_probs=83.6
Q ss_pred CCCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccc--cCCCCCCCCeeeccCCCCCCCCCCCC
Q 033897 2 DDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRIN--MTCVNHETGVVEPKKFGLLVNWQREY 79 (109)
Q Consensus 2 ~d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~--Hpnv~~~~g~ic~~~l~~~~~W~p~~ 79 (109)
++++|++ +|+++|.||+|||||||.|+++|.||++||++||+|+|.|+++ ||||+. +|.||+++|. ++|+|++
T Consensus 48 ~~~~nl~--~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV~~-~G~ICL~iL~--~~WsP~~ 122 (136)
T 2a7l_A 48 SVQNSIT--QWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYS-NGHICLSILT--EDWSPAL 122 (136)
T ss_dssp CCCCSCE--EEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBCT-TCBBCCGGGT--TTCCTTS
T ss_pred eCccccc--eeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccCCC-CCeEEchhcC--CCCCCCC
Confidence 4678898 9999999999999999999999999999999999999999999 999997 9999999997 8999999
Q ss_pred CHHHHHHHHHHHhc
Q 033897 80 TMEDILTQLKKEMA 93 (109)
Q Consensus 80 ~l~~il~~i~~ll~ 93 (109)
+|++||++|++||.
T Consensus 123 ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 123 SVQSVCLSIISMLS 136 (136)
T ss_dssp CHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHhC
Confidence 99999999999984
No 47
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=3.9e-36 Score=229.90 Aligned_cols=102 Identities=26% Similarity=0.593 Sum_probs=97.5
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTME 82 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~ 82 (109)
+++|++ +|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. ++|+|++||+
T Consensus 28 ~~~nl~--~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~-~G~iCl~il~--~~W~p~~~i~ 102 (399)
T 4ddg_A 28 VGDDMF--HWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSISLDILR--SQWSPALTIS 102 (399)
T ss_dssp ETTEEE--EEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBCT-TCBBCCGGGT--TSCCTTCCHH
T ss_pred cCCcce--EEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccCC-CCeEeCcccc--cCCCccccHH
Confidence 467888 9999999999999999999999999999999999999999999999997 9999999997 8999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 033897 83 DILTQLKKEMAAPHNRKLVQPPEGTYF 109 (109)
Q Consensus 83 ~il~~i~~ll~~p~~~~~~~~~a~~~~ 109 (109)
+||++|++||.+|++++|+|++||++|
T Consensus 103 ~vL~~i~~ll~~pnp~~p~n~~aa~~~ 129 (399)
T 4ddg_A 103 KVLLSICSLLCDPNPDDPLVPEIARIY 129 (399)
T ss_dssp HHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCchhhHHHHHHH
Confidence 999999999999999999999998643
No 48
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=9.4e-36 Score=204.72 Aligned_cols=102 Identities=26% Similarity=0.547 Sum_probs=93.6
Q ss_pred CCCCCceeEEEEEEECCCCCCCC--CCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCC
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHE--GRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYT 80 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~ye--gg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~ 80 (109)
+++|++ +|+++|.||++|+|+ ||.|+++|.||++||++||+|+|.|++|||||+. +|.||+++|. ++|+|+++
T Consensus 45 ~~~nl~--~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~-~G~iCl~il~--~~W~p~~~ 119 (167)
T 4ds2_A 45 DTDTIY--NWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTG-EGGICDRMVN--DFWTPDQH 119 (167)
T ss_dssp EESSTT--EEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEEEESSCCCCSSCCT-TSCCCTHHHH--TTCCTTSC
T ss_pred CCCccc--EEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEEEEeCCcccccCCC-CCEEEcccCc--CCCCCCCC
Confidence 467899 999999999999999 9999999999999999999999999999999996 9999999997 89999999
Q ss_pred HHHHHH-HHHHHhcC--CCCCCCCCCCCCCCC
Q 033897 81 MEDILT-QLKKEMAA--PHNRKLVQPPEGTYF 109 (109)
Q Consensus 81 l~~il~-~i~~ll~~--p~~~~~~~~~a~~~~ 109 (109)
++++|+ .|++|+.. |++++|+|++|+++|
T Consensus 120 i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~ 151 (167)
T 4ds2_A 120 ASDVIKLVLDRVFSQYKSRRDDDVNPEARHYL 151 (167)
T ss_dssp HHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCCcchHhHHHHHHH
Confidence 999765 57777764 899999999998653
No 49
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=99.98 E-value=5e-33 Score=207.33 Aligned_cols=100 Identities=16% Similarity=0.274 Sum_probs=92.9
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccc-----cccCCCCCCCCeeeccCCCC-----C
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR-----INMTCVNHETGVVEPKKFGL-----L 72 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~-----i~Hpnv~~~~g~ic~~~l~~-----~ 72 (109)
+++|++ .|+++|.||++|||+||+|+++|.||++||++||+|+|.|+ +|||||+. +|.||+++|.. .
T Consensus 105 ~ednl~--~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ifHPNV~~-~G~ICLsiL~~~~g~~~ 181 (323)
T 3ceg_A 105 DEERLD--IMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN-DGKVCLSILNTWHGRPE 181 (323)
T ss_dssp ESSCTT--EEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTCCCBTTBCT-TCBBCCGGGTSSCCCGG
T ss_pred cCCCcc--ccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcccccCCCCc-CCeEechhhccccCCCc
Confidence 568899 99999999999999999999999999999999999999998 99999997 99999999962 1
Q ss_pred CCCCCCC-CHHHHHHHHHHHhc--CCCCCCCCCCCC
Q 033897 73 VNWQREY-TMEDILTQLKKEMA--APHNRKLVQPPE 105 (109)
Q Consensus 73 ~~W~p~~-~l~~il~~i~~ll~--~p~~~~~~~~~a 105 (109)
++|+|++ +|++||++|++||. +|++++|++.++
T Consensus 182 e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a 217 (323)
T 3ceg_A 182 EKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERS 217 (323)
T ss_dssp GSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGG
T ss_pred CCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHH
Confidence 5899999 89999999999996 778899999876
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.97 E-value=8.4e-32 Score=188.04 Aligned_cols=91 Identities=23% Similarity=0.332 Sum_probs=78.6
Q ss_pred CCCCCceeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCC-CCCCCCCCCH
Q 033897 3 DGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGL-LVNWQREYTM 81 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~-~~~W~p~~~l 81 (109)
+++|++ +|+++|.||++|||+||+|+++|.||++||++||+|+|.|+ |||++. +|.||+++|+. .+.|+|+++|
T Consensus 39 ~~~nl~--~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~~-~G~ICL~iL~~~~~~W~P~~ti 113 (187)
T 2f4w_A 39 LPSNIL--EWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKC-NTRLCLSITDFHPDTWNPAWSV 113 (187)
T ss_dssp ETTEEE--EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBCT-TSCBC----------CCTTCCH
T ss_pred cCCccc--eeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cceecc-CCeEeeeccccCccCCCCcCcH
Confidence 467888 99999999999999999999999999999999999999999 999997 89999999942 2899999999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 033897 82 EDILTQLKKEMAAPHNR 98 (109)
Q Consensus 82 ~~il~~i~~ll~~p~~~ 98 (109)
.+||++|++||.+|+++
T Consensus 114 ~~vL~si~sll~~p~p~ 130 (187)
T 2f4w_A 114 STILTGLLSFMVEKGPT 130 (187)
T ss_dssp HHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 99999999999999875
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.97 E-value=3.4e-32 Score=189.91 Aligned_cols=95 Identities=17% Similarity=0.313 Sum_probs=87.3
Q ss_pred CCCCCceeEEEEEEECC-CCCCCCC-----------CEEEEEEEccCCCCCCCCccccccccccC-CCCCCCCeeeccCC
Q 033897 3 DGDDIYMRSWTGTIIGP-HNTVHEG-----------RIYQLKLFCDKDYPEKPPSVRFHSRINMT-CVNHETGVVEPKKF 69 (109)
Q Consensus 3 d~~d~~~~~w~~~i~Gp-~~t~yeg-----------g~~~~~i~fp~~yP~~pP~v~f~t~i~Hp-nv~~~~g~ic~~~l 69 (109)
+++|++ +|+++|.|| ++|||+| |.|+++|.||++||++||+|+|.|+++|| ||+. +|.||+++|
T Consensus 55 ~~dnl~--~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP~V~f~tpi~hPnnV~~-~G~ICL~iL 131 (186)
T 1zuo_A 55 INDSLY--DWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLG-GGALCMELL 131 (186)
T ss_dssp ETTEEE--EEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCEEEEEESCEESTTBCG-GGBBCCGGG
T ss_pred cCCccc--eeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCCeEEEeCCccCCCccCC-CCcEEeccC
Confidence 457888 999999998 9999998 89999999999999999999999999999 6997 999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCC
Q 033897 70 GLLVNWQREYTMEDILTQLKKEMAAPHNRKLV 101 (109)
Q Consensus 70 ~~~~~W~p~~~l~~il~~i~~ll~~p~~~~~~ 101 (109)
. .++|+|+++|++||++|++||.+|+.+...
T Consensus 132 ~-~~~WsP~~ti~~VL~sI~slL~~p~a~~~~ 162 (186)
T 1zuo_A 132 T-KQGWSSAYSIESVIMQINATLVKGKARVQF 162 (186)
T ss_dssp S-TTTCCTTSCHHHHHHHHHHHHHHTTCEECT
T ss_pred C-CCCCCCcCcHHHHHHHHHHHHcCCChhHhh
Confidence 5 378999999999999999999998776543
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.89 E-value=4.5e-24 Score=145.52 Aligned_cols=78 Identities=9% Similarity=0.115 Sum_probs=71.0
Q ss_pred CCCCceeEEEEEEECCCCCCCCCC----------EEEEEEEccCCCCCCCCccccccc-cccCCCCCCCCeeeccCCCCC
Q 033897 4 GDDIYMRSWTGTIIGPHNTVHEGR----------IYQLKLFCDKDYPEKPPSVRFHSR-INMTCVNHETGVVEPKKFGLL 72 (109)
Q Consensus 4 ~~d~~~~~w~~~i~Gp~~t~yegg----------~~~~~i~fp~~yP~~pP~v~f~t~-i~Hpnv~~~~g~ic~~~l~~~ 72 (109)
++|++ .|.+.+.||.||+|+|| .|++++.||.+||++||+|+|.++ ++|||||. +|+||+++|. .
T Consensus 52 k~n~~--~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~hpnmY~-~G~ICLdIL~-k 127 (172)
T 2z6o_A 52 KNADN--DWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYR-GGKICLTDHF-K 127 (172)
T ss_dssp HHTTC--CCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSBCT-TSBBCCCTTH-H
T ss_pred ccccc--eeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCCCCCCCC-CCcEechhhc-c
Confidence 35777 99999999999999999 999999999999999999999998 99999998 9999999983 1
Q ss_pred C---CCCCCCCHHHHH
Q 033897 73 V---NWQREYTMEDIL 85 (109)
Q Consensus 73 ~---~W~p~~~l~~il 85 (109)
. .|+|.++|..+|
T Consensus 128 p~Ws~~~P~~~IahiL 143 (172)
T 2z6o_A 128 PLWARNVPKFGLAHLM 143 (172)
T ss_dssp HHHHHHTTSCCHHHHH
T ss_pred ccccccCCccCHHHHH
Confidence 3 455999999997
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.79 E-value=9.6e-20 Score=124.35 Aligned_cols=85 Identities=15% Similarity=0.309 Sum_probs=74.7
Q ss_pred EEEEEEECCCCCCCCCCE---EEEEEEccCCCCCCCCcccccc-------c---cc-cCCCCCCCCeeeccCCCCCCCCC
Q 033897 11 SWTGTIIGPHNTVHEGRI---YQLKLFCDKDYPEKPPSVRFHS-------R---IN-MTCVNHETGVVEPKKFGLLVNWQ 76 (109)
Q Consensus 11 ~w~~~i~Gp~~t~yegg~---~~~~i~fp~~yP~~pP~v~f~t-------~---i~-Hpnv~~~~g~ic~~~l~~~~~W~ 76 (109)
++-+++.|...++|+|+. |.+.|-||.+||++||.|.|.+ + ++ |||||. +|+||+++| ++|+
T Consensus 62 ~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~-~G~I~lpyL---~~W~ 137 (162)
T 3r3q_A 62 QLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDS-NGWIALPIL---HAWD 137 (162)
T ss_dssp EEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCT-TSBBCCGGG---GSCC
T ss_pred heEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCC-CCcEeCccc---ccCC
Confidence 556667777679999999 8899999999999999997754 1 77 999998 999999999 4699
Q ss_pred C-CCCHHHHHHHHHHHhcCCCCCC
Q 033897 77 R-EYTMEDILTQLKKEMAAPHNRK 99 (109)
Q Consensus 77 p-~~~l~~il~~i~~ll~~p~~~~ 99 (109)
+ +.++.++|.+|+++|.+|+++.
T Consensus 138 p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 138 PAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp GGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred CCcCcHHHHHHHHHHHhcCCCCCC
Confidence 8 6899999999999999999975
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.60 E-value=5e-16 Score=104.16 Aligned_cols=63 Identities=14% Similarity=0.264 Sum_probs=58.1
Q ss_pred EEEEEEECCCCCCCCCC----------EEEEEEEccCCCCCCCCccccccc-cccCCCCCCCCeeeccCCCCCCCCCCCC
Q 033897 11 SWTGTIIGPHNTVHEGR----------IYQLKLFCDKDYPEKPPSVRFHSR-INMTCVNHETGVVEPKKFGLLVNWQREY 79 (109)
Q Consensus 11 ~w~~~i~Gp~~t~yegg----------~~~~~i~fp~~yP~~pP~v~f~t~-i~Hpnv~~~~g~ic~~~l~~~~~W~p~~ 79 (109)
.|...+.||.||+|+|+ .|+++++||.+||.+||+|+|.+. .+|+|+|. +|+||+++. |+|.+
T Consensus 59 dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgkt~kmYr-~GkICLdIh-----wkPlW 132 (168)
T 3kpa_A 59 HWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGKTVKMYR-GGKICMTTH-----FFPLW 132 (168)
T ss_dssp CCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSEET-TTEECCCTT-----HHHHH
T ss_pred CeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCcCccccC-CCcEEeccc-----cchhh
Confidence 79999999999999999 999999999999999999999995 89999997 999999874 66654
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.53 E-value=7.6e-15 Score=98.58 Aligned_cols=79 Identities=19% Similarity=0.352 Sum_probs=69.5
Q ss_pred CCCceeEEEEEEECCCCCCCCCCEEEE--EEEccCCCCCCCCccccccc------cccCCCCCCCCeeeccCCCCCCCCC
Q 033897 5 DDIYMRSWTGTIIGPHNTVHEGRIYQL--KLFCDKDYPEKPPSVRFHSR------INMTCVNHETGVVEPKKFGLLVNWQ 76 (109)
Q Consensus 5 ~d~~~~~w~~~i~Gp~~t~yegg~~~~--~i~fp~~yP~~pP~v~f~t~------i~Hpnv~~~~g~ic~~~l~~~~~W~ 76 (109)
.+++ +|.++|. .+|+|+.|.+ .|-||.+||++||.| |.++ ..|+|||. +|+||++.|. .|+
T Consensus 51 ~~LL--~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~-~G~i~lpyL~---~W~ 119 (146)
T 3obq_A 51 RELM--NLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDA-NGKIYLPYLH---EWK 119 (146)
T ss_dssp CEEE--EEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCT-TCBBCCHHHH---TCC
T ss_pred heEE--EEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCC-CCCEeccccc---ccC
Confidence 3555 9999998 6899999995 889999999999999 7766 48999998 9999999984 598
Q ss_pred C-CCCHHHHHHHHHHHhcC
Q 033897 77 R-EYTMEDILTQLKKEMAA 94 (109)
Q Consensus 77 p-~~~l~~il~~i~~ll~~ 94 (109)
+ ..+|.+++..+++.|.+
T Consensus 120 ~~~snL~~ll~~l~~~F~~ 138 (146)
T 3obq_A 120 HPQSDLLGLIQVMIVVFGD 138 (146)
T ss_dssp TTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 6 89999999999999974
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.81 E-value=0.035 Score=35.22 Aligned_cols=40 Identities=25% Similarity=0.329 Sum_probs=27.7
Q ss_pred EEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCcccccc
Q 033897 11 SWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50 (109)
Q Consensus 11 ~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t 50 (109)
.+.+.|..-.+..-+.-.+.+.+.+|++||.++|.+...+
T Consensus 39 ~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 39 SFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp EEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred EEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 4555555322222234478899999999999999998765
No 57
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=93.64 E-value=0.14 Score=32.72 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=28.5
Q ss_pred EEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCcccccc
Q 033897 11 SWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50 (109)
Q Consensus 11 ~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t 50 (109)
.+.+.+.+..+ .=..-.+.+.+.+|++||..+|.+...+
T Consensus 47 ~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 47 IFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp CEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred EEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence 56777764322 1123478899999999999999998765
No 58
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.22 E-value=0.28 Score=30.99 Aligned_cols=39 Identities=13% Similarity=0.133 Sum_probs=27.7
Q ss_pred EEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCcccccc
Q 033897 11 SWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS 50 (109)
Q Consensus 11 ~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t 50 (109)
.+.+.+...... =..-.+.+.+.+|.+||..+|.+...+
T Consensus 41 ~f~i~l~~~~~~-~~~~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 41 VFRIHTKAEGFM-DADIPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp EEEEEEECCTTT-TCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred eEEEEecCCCCC-CCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence 667777632211 012478999999999999999997664
No 59
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=92.94 E-value=0.24 Score=31.23 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=38.3
Q ss_pred CEEEEEEEccCCCCCCCCccccccccccCCCCCC-CCeeeccCCCCCCCC---CCCCCHHHHHHHHHHHhcCCC
Q 033897 27 RIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE-TGVVEPKKFGLLVNW---QREYTMEDILTQLKKEMAAPH 96 (109)
Q Consensus 27 g~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~-~g~ic~~~l~~~~~W---~p~~~l~~il~~i~~ll~~p~ 96 (109)
-.+.+.|.+|++||..+|.+...+.. ++... -..+|-.+ . +.| ...-=|.+++..+|..|.+-|
T Consensus 59 ~~~~L~~~~p~~YP~~~P~i~~~~~~---~L~~~~~~~L~~~L-~--~~~~e~~G~~mif~lv~~lqe~l~~~n 126 (128)
T 2day_A 59 VCFTLVLQVPAEYPHEVPQISIRNPR---GLSDEQIHTILQVL-G--HVAKAGLGTAMLYELIEKGKEILSGPS 126 (128)
T ss_dssp CEEEEEEEECSSTTSSCCEEEEEEEE---SSCHHHHHHHHHHH-H--HHHHHTTTSCCHHHHHHHHHHHHCCCC
T ss_pred eeEEEEEEcCCCCCCCCCCeEEEcCC---CCCHHHHHHHHHHH-H--HHHHHhCCCEEhHHHHHHHHHHHHhcc
Confidence 47889999999999999999877632 23210 01122111 1 222 122247778888888776543
No 60
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=91.10 E-value=0.12 Score=32.94 Aligned_cols=62 Identities=11% Similarity=0.281 Sum_probs=37.6
Q ss_pred CEEEEEEEccCCCCCCCCccccccccccCCCCCCC-CeeeccCCCCCCCC---CCCCCHHHHHHHHHHHhcC
Q 033897 27 RIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHET-GVVEPKKFGLLVNW---QREYTMEDILTQLKKEMAA 94 (109)
Q Consensus 27 g~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~-g~ic~~~l~~~~~W---~p~~~l~~il~~i~~ll~~ 94 (109)
-.+.+.|.||++||.++|.|..... .++.... ..+|-. |. +.| ...-=|.+++..+|..|.+
T Consensus 63 ~~~~L~v~~p~~YP~~~P~i~l~~~---~~L~~~~~~~L~~~-L~--~~~~e~~G~~mif~lv~~lqe~l~~ 128 (137)
T 1ukx_A 63 VQVELRVKCPPTYPDVVPEIDLKNA---KGLSNESVNLLKSH-LE--ELAKKQCGEVMIFELAHHVQSFLSE 128 (137)
T ss_dssp CEEEEEECCCTTTTSSCCCCEEEEE---ESSSSSHHHHHHHH-HH--HHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCCCCCCcEEEecC---CCCCHHHHHHHHHH-HH--HHHHHhCCCEEhHHHHHHHHHHHHh
Confidence 4688999999999999999987543 2332210 111111 11 222 1233477888888888764
No 61
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=91.07 E-value=0.95 Score=30.99 Aligned_cols=61 Identities=15% Similarity=0.248 Sum_probs=45.8
Q ss_pred EEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCccccccccccCCCCCCCCeeeccCCCCCCCCCCCCCHHHHHHHHHH
Q 033897 11 SWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKK 90 (109)
Q Consensus 11 ~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~~g~ic~~~l~~~~~W~p~~~l~~il~~i~~ 90 (109)
..++++..- .|..-.++|.++.+||.++|.+...-|+ |. .-.|++..++.+++.+.+.
T Consensus 27 ~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~---------------~~~w~~~ssL~~v~~qF~~ 84 (186)
T 3zqs_A 27 TIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPV--PF---------------CASWTPQSSLISIYSQFLA 84 (186)
T ss_dssp EEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSS--CC---------------CCCCCTTCCHHHHHHHHHH
T ss_pred EEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCC--Cc---------------ccccCCCccHHHHHHHHHH
Confidence 666666643 3578889999999999999988665543 11 0469988999999988887
Q ss_pred Hhc
Q 033897 91 EMA 93 (109)
Q Consensus 91 ll~ 93 (109)
.|.
T Consensus 85 ~Le 87 (186)
T 3zqs_A 85 AIE 87 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 62
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=89.81 E-value=0.22 Score=32.56 Aligned_cols=25 Identities=20% Similarity=0.378 Sum_probs=21.6
Q ss_pred CEEEEEEEccCCCCCCCCccccccc
Q 033897 27 RIYQLKLFCDKDYPEKPPSVRFHSR 51 (109)
Q Consensus 27 g~~~~~i~fp~~yP~~pP~v~f~t~ 51 (109)
-.+.+.|.+|.+||..+|.+.....
T Consensus 73 ~~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 73 AMFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEEECSSTTSSCCCCEEECT
T ss_pred ceEEEEEECCCCCCCCCCeEEEEcc
Confidence 3688999999999999999987763
No 63
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=87.77 E-value=0.37 Score=31.65 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=21.4
Q ss_pred CEEEEEEEccCCCCCCCCcccccc
Q 033897 27 RIYQLKLFCDKDYPEKPPSVRFHS 50 (109)
Q Consensus 27 g~~~~~i~fp~~yP~~pP~v~f~t 50 (109)
..+.++|.+|.+||..+|.+...+
T Consensus 75 ~~i~L~v~lP~~YP~~~P~i~l~~ 98 (154)
T 2daw_A 75 VKIDLQVTMPHSYPYLALQLFGRS 98 (154)
T ss_dssp EEEEEEEEECSSTTSSCCEEEEEC
T ss_pred ceEEEEEEcCCCCCCCCCcEEEEe
Confidence 379999999999999999998665
No 64
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=45.11 E-value=47 Score=21.51 Aligned_cols=44 Identities=9% Similarity=0.245 Sum_probs=31.5
Q ss_pred CCceeEEE--EEEECCCCCCCC-CCEEEEEEEccCCCCCCCCccccccc
Q 033897 6 DIYMRSWT--GTIIGPHNTVHE-GRIYQLKLFCDKDYPEKPPSVRFHSR 51 (109)
Q Consensus 6 d~~~~~w~--~~i~Gp~~t~ye-gg~~~~~i~fp~~yP~~pP~v~f~t~ 51 (109)
+.-+++|. +.+.|+.|.... .-+=++.+.+.+.|+. |...+..+
T Consensus 29 g~~~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~n--p~r~v~~p 75 (140)
T 3qrl_A 29 NFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFAN--PNRTFTDP 75 (140)
T ss_dssp TBCCEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSS--CEEEECST
T ss_pred CCcccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCC--CeEEEcCC
Confidence 34457998 899999988764 4566688888888864 66555544
No 65
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=34.87 E-value=29 Score=23.86 Aligned_cols=26 Identities=8% Similarity=0.204 Sum_probs=22.2
Q ss_pred CCCEEEEEEEccCCCCC-----CCCcccccc
Q 033897 25 EGRIYQLKLFCDKDYPE-----KPPSVRFHS 50 (109)
Q Consensus 25 egg~~~~~i~fp~~yP~-----~pP~v~f~t 50 (109)
+.|.|.|+-.+|-.||. +||.|.|.-
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~V 139 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLII 139 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEEE
Confidence 46999999999999998 788888764
No 66
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=34.67 E-value=73 Score=21.36 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=28.0
Q ss_pred eeEEEEEEECCCCCCCCCCEEEEEEEccCCCCCCCCcccc
Q 033897 9 MRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRF 48 (109)
Q Consensus 9 ~~~w~~~i~Gp~~t~yegg~~~~~i~fp~~yP~~pP~v~f 48 (109)
-++|.+.+.|+.+.-...-+=++.+.+.+.|+. |.-.+
T Consensus 32 TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv 69 (175)
T 3rls_A 32 THLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSI 69 (175)
T ss_dssp CEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEE
T ss_pred cEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEE
Confidence 359999999987765555667788889899874 44444
No 67
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=33.28 E-value=21 Score=15.96 Aligned_cols=17 Identities=24% Similarity=0.209 Sum_probs=11.1
Q ss_pred CCCCCccccccccccCC
Q 033897 40 PEKPPSVRFHSRINMTC 56 (109)
Q Consensus 40 P~~pP~v~f~t~i~Hpn 56 (109)
|+..|.-.|..+-|||-
T Consensus 4 pmtlpenyfserpyhpp 20 (26)
T 2jrw_A 4 PMTLPENYFSERPYHPP 20 (26)
T ss_dssp CCCCSSSSCCSSSCCSC
T ss_pred ccccchhhcccCCCCCC
Confidence 55566666777777763
No 68
>1lvm_A Catalytic domain of the nuclear inclusion protein A (NIA); beta barrel, chymotrypsin-type cystein protease, enzyme- peptide complex; 1.80A {Tobacco etch virus} SCOP: b.47.1.3 PDB: 1lvb_A 1q31_A
Probab=23.88 E-value=79 Score=22.11 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=19.1
Q ss_pred EEEEccCCCCCCCCcccccccc
Q 033897 31 LKLFCDKDYPEKPPSVRFHSRI 52 (109)
Q Consensus 31 ~~i~fp~~yP~~pP~v~f~t~i 52 (109)
+-|.+|.++|--|-+.+|..|.
T Consensus 91 iiIrmPkDfpPf~~~l~FR~P~ 112 (229)
T 1lvm_A 91 IIIRMPKDFPPFPQKLKFREPQ 112 (229)
T ss_dssp EEEECCTTSCCCCSCCCBCCCC
T ss_pred EEEeCCCcCCCcccccccCCCC
Confidence 6788999999889999999864
No 69
>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral protein, hydrolase; 1.70A {Tobacco vein mottling virus} SCOP: b.47.1.0
Probab=23.32 E-value=76 Score=22.38 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=18.9
Q ss_pred EEEEccCCCCCCCCcccccccc
Q 033897 31 LKLFCDKDYPEKPPSVRFHSRI 52 (109)
Q Consensus 31 ~~i~fp~~yP~~pP~v~f~t~i 52 (109)
+-|.+|.+||--|-+.+|..|.
T Consensus 83 iiIrmPkDfpPf~~kl~FR~P~ 104 (241)
T 3mmg_A 83 IVIKMAKDFPPFPQKLKFRQPT 104 (241)
T ss_dssp EEEECCTTSCCCCSCCCBCCCC
T ss_pred EEEeCCCCCCCcchhcccCCCC
Confidence 5678999999889999999864
No 70
>2cu9_A Spcia1, histone chaperone CIA1; immunoglobulin fold, structural genomics, NPPSFA; 1.80A {Schizosaccharomyces pombe} SCOP: b.1.22.1 PDB: 2dze_A* 2z34_A 2z3f_A
Probab=20.53 E-value=1.9e+02 Score=19.04 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=27.8
Q ss_pred EEEEEEECCCCC-------------CCCCCEEEEEEEccCCCCCCCCc
Q 033897 11 SWTGTIIGPHNT-------------VHEGRIYQLKLFCDKDYPEKPPS 45 (109)
Q Consensus 11 ~w~~~i~Gp~~t-------------~yegg~~~~~i~fp~~yP~~pP~ 45 (109)
+|+++..|..++ |..-|.++|.+.-++--+.+-|.
T Consensus 39 ewkliYVgSa~s~~~DQ~Ld~v~VGPi~~G~~kFv~~adpPd~~~IP~ 86 (161)
T 2cu9_A 39 EWKLTYVGSATSQSYDQILDTLLVGPIPIGINKFVFEADPPNIDLLPQ 86 (161)
T ss_dssp EEEEEEESSTTSCCCEEEEEEEEECSCCSEEEEEEEEECCCCGGGSSC
T ss_pred EEEEEEEcCCCCccCCeEeeEEEECCccceEEEEEEEcCCCChhHCCC
Confidence 899999997664 66679999999887666666666
Done!