Query 033898
Match_columns 109
No_of_seqs 102 out of 131
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 07:32:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3319 Predicted membrane pro 100.0 3.9E-60 8.5E-65 355.9 5.0 102 7-108 52-153 (153)
2 PF04061 ORMDL: ORMDL family ; 100.0 2.4E-58 5.1E-63 341.2 5.8 95 7-101 41-136 (136)
3 COG5081 Predicted membrane pro 100.0 2.6E-49 5.7E-54 301.7 2.3 100 8-107 73-172 (180)
4 PF12897 Aminotran_MocR: Alani 39.0 20 0.00043 31.6 1.8 37 5-61 94-132 (425)
5 KOG4463 Uncharacterized conser 37.2 13 0.00027 31.7 0.3 50 58-108 102-152 (323)
6 cd08622 PI-PLCXDc_CG14945_like 26.7 9 0.00019 30.8 -2.2 48 2-50 8-55 (276)
7 cd08621 PI-PLCXDc_like_2 Catal 24.1 16 0.00034 29.8 -1.3 49 3-51 9-57 (300)
8 PRK13693 (3R)-hydroxyacyl-ACP 19.9 1.3E+02 0.0027 21.6 2.9 33 37-69 2-34 (142)
9 PF05630 NPP1: Necrosis induci 17.6 26 0.00056 27.3 -1.2 13 35-47 165-177 (206)
10 TIGR01634 tail_P2_I phage tail 17.3 41 0.00088 25.0 -0.1 37 15-51 66-108 (139)
No 1
>KOG3319 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=3.9e-60 Score=355.93 Aligned_cols=102 Identities=58% Similarity=0.991 Sum_probs=100.3
Q ss_pred hHHHHHHHHHhhhhhhhcCCCCCCCCcccCCCcceeeecCCCCCcccceeehhhHHHHHHHhhcccCCCCcchhhhHHHh
Q 033898 7 SLLVFLFQVTYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQNPMLFFNTLAV 86 (109)
Q Consensus 7 ~~~i~h~~~ty~~fHwvKGtPF~~~qG~y~~LT~WEQID~g~q~TptrKFL~~vPIvLFllathyt~yd~~~f~iN~~~l 86 (109)
-+|++||++||+||||+|||||++|||+||+||||||||+|.||||+||||+++||+||++||||||||..+|++|++|+
T Consensus 52 ltnl~h~~~tyi~fH~vkGtPF~~d~g~y~~lT~WEQid~g~q~T~~RKFLtivPIvLfl~~s~yt~y~~~~F~~N~~sl 131 (153)
T KOG3319|consen 52 LTNLIHNIGTYIFFHWVKGTPFEDDQGAYRLLTHWEQIDDGVQYTPSRKFLTIVPIVLFLLASHYTKYDHPLFLLNTLSL 131 (153)
T ss_pred HHHHHHHHhHheeEEEecCCCCcCCCcHhhhccHHHHhccccccccchhhhhHHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCccceeeeeccccC
Q 033898 87 FVLVVAKFPNMHKVRIFGINAD 108 (109)
Q Consensus 87 ~~vviPKLP~~HrvRifGin~~ 108 (109)
++|++||||+||||||||||||
T Consensus 132 ~~v~iPKlp~~H~vRIfgIn~~ 153 (153)
T KOG3319|consen 132 FVVVIPKLPQMHGVRIFGINKY 153 (153)
T ss_pred HhhhhccccccceEEEecccCC
Confidence 9999999999999999999997
No 2
>PF04061 ORMDL: ORMDL family ; InterPro: IPR007203 ORMDL1 belongs to a novel gene family comprising three genes in humans (ORMDL1, ORMDL2 and ORMDL3), and homologs in yeast, microsporidia, plants, Drosophila, urochordates and vertebrates. ORMDLs are involved in protein folding in the endoplasmic reticulum. ; GO: 0016021 integral to membrane
Probab=100.00 E-value=2.4e-58 Score=341.19 Aligned_cols=95 Identities=54% Similarity=0.934 Sum_probs=93.5
Q ss_pred hHHHHHHHHHhhhhhhhcCCCCCC-CCcccCCCcceeeecCCCCCcccceeehhhHHHHHHHhhcccCCCCcchhhhHHH
Q 033898 7 SLLVFLFQVTYHFFHWKKGTPFAD-DQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQNPMLFFNTLA 85 (109)
Q Consensus 7 ~~~i~h~~~ty~~fHwvKGtPF~~-~qG~y~~LT~WEQID~g~q~TptrKFL~~vPIvLFllathyt~yd~~~f~iN~~~ 85 (109)
.+|++|+++||+||||+||+||++ |||+||+||+|||||+|+||||+||||++|||+||++|+|||+||+.+|.+|+++
T Consensus 41 ltn~~h~~~ty~~fHwvKGtPf~~~~qG~y~~LT~WEQID~g~q~TptrKFL~~vPivLfllas~yt~y~~~~f~iN~~~ 120 (136)
T PF04061_consen 41 LTNLIHNIITYIFFHWVKGTPFEFMDQGAYDNLTMWEQIDDGAQYTPTRKFLTIVPIVLFLLASHYTHYDPQHFFINFIA 120 (136)
T ss_pred HHHHHHHHHHHhheeeecCCCCCCCCCcccccCcHHHhcccCCcCCcceeeeehhHHHHHHHHHHhhcCChhHHHHHHHH
Confidence 479999999999999999999977 9999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhcCCCccceee
Q 033898 86 VFVLVVAKFPNMHKVR 101 (109)
Q Consensus 86 l~~vviPKLP~~HrvR 101 (109)
+++|++||||+|||||
T Consensus 121 l~~vvipKLP~~H~vR 136 (136)
T PF04061_consen 121 LLVVVIPKLPFMHRVR 136 (136)
T ss_pred HHHHhhcCCchhccCC
Confidence 9999999999999999
No 3
>COG5081 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.6e-49 Score=301.69 Aligned_cols=100 Identities=34% Similarity=0.604 Sum_probs=97.7
Q ss_pred HHHHHHHHHhhhhhhhcCCCCCCCCcccCCCcceeeecCCCCCcccceeehhhHHHHHHHhhcccCCCCcchhhhHHHhH
Q 033898 8 LLVFLFQVTYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQNPMLFFNTLAVF 87 (109)
Q Consensus 8 ~~i~h~~~ty~~fHwvKGtPF~~~qG~y~~LT~WEQID~g~q~TptrKFL~~vPIvLFllathyt~yd~~~f~iN~~~l~ 87 (109)
.|+.|++++|+||||+||+||++|+||||+||||||+|+|.||||+||||+++||+||++++||+|||..+|++|+.+++
T Consensus 73 tnmtY~igsfImFH~i~GtPFdfnggaYd~lTmWEQl~e~~~yTP~rkfll~~PiilFl~sn~y~~~n~~lF~~ni~~lf 152 (180)
T COG5081 73 TNMTYNIGSFIMFHLIKGTPFDFNGGAYDNLTMWEQLDEETLYTPDRKFLLLVPIILFLASNHYVHYNIFLFLINITSLF 152 (180)
T ss_pred HHHHHHhhhheeEEeecCCCcccCCchhhhhhHHHHhccccccCcchhHHHHHHHHHHHHHhhheeehhhhHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCccceeeeecccc
Q 033898 88 VLVVAKFPNMHKVRIFGINA 107 (109)
Q Consensus 88 ~vviPKLP~~HrvRifGin~ 107 (109)
.|++||||++||.||+||.+
T Consensus 153 ~v~iPKlg~~Hr~RI~~i~~ 172 (180)
T COG5081 153 LVVIPKLGFTHRLRISIIPG 172 (180)
T ss_pred hhhccccchhhhhhhhcccc
Confidence 99999999999999998764
No 4
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=38.98 E-value=20 Score=31.64 Aligned_cols=37 Identities=32% Similarity=0.470 Sum_probs=25.1
Q ss_pred chhHHHHHHHHHhhhhhhhcC--CCCCCCCcccCCCcceeeecCCCCCcccceeehhhH
Q 033898 5 SLSLLVFLFQVTYHFFHWKKG--TPFADDQGIYNGLTWWEQIDNGKQLTRNRKFLTVVP 61 (109)
Q Consensus 5 ~~~~~i~h~~~ty~~fHwvKG--tPF~~~qG~y~~LT~WEQID~g~q~TptrKFL~~vP 61 (109)
+-|+++.|.++++.|+|=+.| +||. ++ +..|||+=||
T Consensus 94 NSSL~lM~d~i~~a~~~G~~~~~~PW~------------------~~--~~vKfLCPvP 132 (425)
T PF12897_consen 94 NSSLNLMHDTISRAMLHGVPGSETPWC------------------KE--EKVKFLCPVP 132 (425)
T ss_dssp S-HHHHHHHHHHHHHHH--TT-SS-GG------------------GS--S--EEEEEES
T ss_pred cchHHHHHHHHHHHHhcCCCCCCCCch------------------hc--cCceEEecCC
Confidence 458899999999999998886 4772 11 5789999888
No 5
>KOG4463 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.24 E-value=13 Score=31.68 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=35.2
Q ss_pred hhhHHHHHHHhhcccCCCC-cchhhhHHHhHHhhhcCCCccceeeeeccccC
Q 033898 58 TVVPVVLYLIASHTTDYQN-PMLFFNTLAVFVLVVAKFPNMHKVRIFGINAD 108 (109)
Q Consensus 58 ~~vPIvLFllathyt~yd~-~~f~iN~~~l~~vviPKLP~~HrvRifGin~~ 108 (109)
...||.+++......+|+. +..-+|+++..- .-=-+|..|.+|+||+|-|
T Consensus 102 l~~~il~~l~~~~~~nl~~~qp~~liFa~~~~-~y~~ip~~~f~r~f~~~f~ 152 (323)
T KOG4463|consen 102 LLEVILLSLLKDTTANLLTSQPYGLIFASFIP-FYLDIPVSTFFRVFGVNFS 152 (323)
T ss_pred HHHHHHHHHHHHHHhhhhhcCCCceeeeeccc-eEEEecceeEEEeeccccc
Confidence 4579999999998888873 344466655421 1123688999999999854
No 6
>cd08622 PI-PLCXDc_CG14945_like Catalytic domain of Drosophila melanogaster CG14945-like proteins similar to phosphatidylinositol-specific phospholipase C, X domain containing. This subfamily corresponds to the catalytic domain present in uncharacterized metazoan Drosophila melanogaster CG14945-like proteins, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI
Probab=26.69 E-value=9 Score=30.79 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=31.1
Q ss_pred cccchhHHHHHHHHHhhhhhhhcCCCCCCCCcccCCCcceeeecCCCCC
Q 033898 2 CLSSLSLLVFLFQVTYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQL 50 (109)
Q Consensus 2 ~~~~~~~~i~h~~~ty~~fHwvKGtPF~~~qG~y~~LT~WEQID~g~q~ 50 (109)
.|+.|++--.|+-++|..-... +.|.-..-..-.+++.+||++.|..|
T Consensus 8 ~l~~l~iPGtHdS~~~~~~~~~-~~~~~~~~~~tQ~~~i~~QL~~GiRy 55 (276)
T cd08622 8 RIKDLFIPGTHNSAAYDTNSNA-NESLVDKYLLTQDLDIWTQLVHGIRY 55 (276)
T ss_pred eeeeeeccccchhhhcCCCCcc-cchhhhhhhcccCCcHHHHHhhCCeE
Confidence 4677888888999988532211 22331111345588999999999875
No 7
>cd08621 PI-PLCXDc_like_2 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=24.05 E-value=16 Score=29.82 Aligned_cols=49 Identities=12% Similarity=-0.008 Sum_probs=32.7
Q ss_pred ccchhHHHHHHHHHhhhhhhhcCCCCCCCCcccCCCcceeeecCCCCCc
Q 033898 3 LSSLSLLVFLFQVTYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQLT 51 (109)
Q Consensus 3 ~~~~~~~i~h~~~ty~~fHwvKGtPF~~~qG~y~~LT~WEQID~g~q~T 51 (109)
|+.|++--.|+.+||.+=+-..+.+.......-.+++.+||++.|..|=
T Consensus 9 L~~l~iPGTHdS~~~~~~~~~~~~~~~~~~~~tQ~~~i~~QL~~GiRyf 57 (300)
T cd08621 9 LRHIVMPGTHDSGMSSLTGGLWPVDGNDSNTQTQGLSIYDQLRAGARYF 57 (300)
T ss_pred hhhccccccchhccccccCCCccccccccccccCCCCHHHHHhcCCcEE
Confidence 5677777889999887432211101234445667899999999998763
No 8
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=19.91 E-value=1.3e+02 Score=21.57 Aligned_cols=33 Identities=27% Similarity=0.237 Sum_probs=26.6
Q ss_pred CCcceeeecCCCCCcccceeehhhHHHHHHHhh
Q 033898 37 GLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIAS 69 (109)
Q Consensus 37 ~LT~WEQID~g~q~TptrKFL~~vPIvLFllat 69 (109)
.|..||++.-|+.+.+..+-++--=|.+|-.++
T Consensus 2 ~~~~~ed~~vG~~~~~~~~tvt~~di~~FA~~s 34 (142)
T PRK13693 2 ALREFSSVKVGDQLPEKTYPLTRQDLVNYAGVS 34 (142)
T ss_pred CcccHhHcCCCCCcCccceeeCHHHHHHHHHHh
Confidence 367799999999996555568888888888887
No 9
>PF05630 NPP1: Necrosis inducing protein (NPP1); InterPro: IPR008701 This family consists of several NPP1-like necrosis inducing proteins from oomycetes, fungi and bacteria. Infiltration of NPP1 into leaves of Arabidopsis thaliana plants result in transcript accumulation of pathogenesis-related (PR) genes, production of ROS and ethylene, callose apposition, and HR-like cell death [].; PDB: 3ST1_A 3GNZ_P 3GNU_P.
Probab=17.61 E-value=26 Score=27.35 Aligned_cols=13 Identities=31% Similarity=0.879 Sum_probs=8.0
Q ss_pred cCCCcceeeecCC
Q 033898 35 YNGLTWWEQIDNG 47 (109)
Q Consensus 35 y~~LT~WEQID~g 47 (109)
+..|=+|||+.+.
T Consensus 165 ~qdLI~Weqlt~~ 177 (206)
T PF05630_consen 165 FQDLIMWEQLTDA 177 (206)
T ss_dssp ---EEECCCS-HH
T ss_pred ccChhhhccCCHH
Confidence 8999999999874
No 10
>TIGR01634 tail_P2_I phage tail protein, P2 protein I family. This model represents the family of phage P2 protein I and related tail proteins from a number of temperate phage of Gram-negative bacteria. This alignment is built as a fragment model and identifies some phage tail proteins with strong but local similarity to members of the seed alignment.
Probab=17.34 E-value=41 Score=25.02 Aligned_cols=37 Identities=35% Similarity=0.399 Sum_probs=24.7
Q ss_pred HHhhhhhhhcCCCCC------CCCcccCCCcceeeecCCCCCc
Q 033898 15 VTYHFFHWKKGTPFA------DDQGIYNGLTWWEQIDNGKQLT 51 (109)
Q Consensus 15 ~ty~~fHwvKGtPF~------~~qG~y~~LT~WEQID~g~q~T 51 (109)
-.-+..|..||||+. .=+|+-+-.-+||+-..|..||
T Consensus 66 k~A~~~hr~kGT~~avr~~l~~lg~~~~i~EW~e~~p~g~P~t 108 (139)
T TIGR01634 66 RSAYFIHRHKGTIGAVRRVVEPFGGIVNITEWWQTGPPGPPGT 108 (139)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCCCeEEeehhccCCCCCCeE
Confidence 344678999999982 2235555555677766687776
Done!