Query 033898
Match_columns 109
No_of_seqs 102 out of 131
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 12:31:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9p_A Pheromone alpha factor 49.8 13 0.00046 24.4 2.9 27 62-91 37-63 (80)
2 3gnz_P 25 kDa protein elicitor 18.4 21 0.00071 27.3 -0.5 19 29-47 164-182 (213)
3 2lpd_A Uncharacterized protein 16.4 89 0.0031 21.4 2.4 22 25-51 17-38 (95)
4 1yfn_E Sigma-E factor negative 16.1 21 0.00071 20.2 -0.7 10 93-102 11-20 (32)
5 3st1_A Necrosis-and ethylene-i 15.7 24 0.00083 27.0 -0.7 19 29-47 163-181 (214)
6 3hzp_A NTF2-like protein of un 13.3 22 0.00076 25.8 -1.4 24 23-49 90-113 (131)
7 3oae_A Late major capsid prote 13.3 51 0.0018 28.0 0.6 44 11-58 374-424 (428)
8 2kdr_X NS4B, P27, non-structur 13.0 41 0.0014 18.5 -0.0 9 2-10 10-18 (28)
9 3iyj_F Major capsid protein L1 12.7 70 0.0024 27.6 1.3 28 30-58 433-467 (495)
10 2hx6_A Ribonuclease, GP61.9; a 12.6 57 0.002 24.1 0.6 14 42-55 91-104 (153)
No 1
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=49.83 E-value=13 Score=24.44 Aligned_cols=27 Identities=15% Similarity=0.683 Sum_probs=20.5
Q ss_pred HHHHHHhhcccCCCCcchhhhHHHhHHhhh
Q 033898 62 VVLYLIASHTTDYQNPMLFFNTLAVFVLVV 91 (109)
Q Consensus 62 IvLFllathyt~yd~~~f~iN~~~l~~vvi 91 (109)
++|++++. +.....|++|.+++++.++
T Consensus 37 iil~lltk---krrspiF~lN~~~L~l~ii 63 (80)
T 2k9p_A 37 IVVWITSR---SRKTPIFIINQVSLFLIIL 63 (80)
T ss_dssp HHHHHHTC---CSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhc---cccChhhHHHHHHHHHHHH
Confidence 56666665 6777789999999887654
No 2
>3gnz_P 25 kDa protein elicitor; toxin, necrosi, ethyleneinducing, immunityassociated responses, plants; 1.35A {Pythium aphanidermatum} PDB: 3gnu_P
Probab=18.35 E-value=21 Score=27.33 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=15.8
Q ss_pred CCCCcccCCCcceeeecCC
Q 033898 29 ADDQGIYNGLTWWEQIDNG 47 (109)
Q Consensus 29 ~~~qG~y~~LT~WEQID~g 47 (109)
+...|++..|-+|||+-++
T Consensus 164 t~~~G~~q~LI~Weql~~~ 182 (213)
T 3gnz_P 164 TTSAGKQQPLIQWEQMTQA 182 (213)
T ss_dssp CSSCCBCCCEEEGGGSCHH
T ss_pred cCCCCCccCeeecccCCHH
Confidence 5567999999999998753
No 3
>2lpd_A Uncharacterized protein; infectious disease, melioidosis, seattle structural genomics for infectious disease, ssgcid, drug target; NMR {Burkholderia pseudomallei}
Probab=16.36 E-value=89 Score=21.36 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=16.0
Q ss_pred CCCCCCCCcccCCCcceeeecCCCCCc
Q 033898 25 GTPFADDQGIYNGLTWWEQIDNGKQLT 51 (109)
Q Consensus 25 GtPF~~~qG~y~~LT~WEQID~g~q~T 51 (109)
-.||++++|.|. =-++++.||+
T Consensus 17 ~~PFDd~~~~f~-----VLvN~E~QYS 38 (95)
T 2lpd_A 17 QGPGSMDDELYF-----VVRNNEGQYS 38 (95)
T ss_dssp SCSCSSCCCCEE-----EEECSSCSCE
T ss_pred cCCCcCCCCcEE-----EEEcCCCccc
Confidence 369987777554 4578888887
No 4
>1yfn_E Sigma-E factor negative regulatory protein; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli}
Probab=16.08 E-value=21 Score=20.18 Aligned_cols=10 Identities=50% Similarity=0.607 Sum_probs=8.4
Q ss_pred CCCccceeee
Q 033898 93 KFPNMHKVRI 102 (109)
Q Consensus 93 KLP~~HrvRi 102 (109)
|+|+.|+||=
T Consensus 11 ~~pfw~kvrp 20 (32)
T 1yfn_E 11 KMPFWQKVRP 20 (32)
T ss_pred hChHHHHhhH
Confidence 6899999983
No 5
>3st1_A Necrosis-and ethylene-inducing protein; mpnep2, NLP family, unknown function, toxin; 1.80A {Moniliophthora perniciosa}
Probab=15.71 E-value=24 Score=26.96 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=15.9
Q ss_pred CCCCcccCCCcceeeecCC
Q 033898 29 ADDQGIYNGLTWWEQIDNG 47 (109)
Q Consensus 29 ~~~qG~y~~LT~WEQID~g 47 (109)
+...|++..|-+|||+-++
T Consensus 163 t~~~G~~q~LI~Weql~~~ 181 (214)
T 3st1_A 163 TDKGGDLPTLASWEGMGAD 181 (214)
T ss_dssp CSSCCBCCCEEETTTSCHH
T ss_pred ccCCCCccCeeecccCCHH
Confidence 5567999999999998754
No 6
>3hzp_A NTF2-like protein of unknown function; YP_291699.1, structural genomics, joint center structural genomics, JCSG; HET: MSE 1PE; 1.40A {Prochlorococcus marinus}
Probab=13.34 E-value=22 Score=25.76 Aligned_cols=24 Identities=21% Similarity=0.208 Sum_probs=19.6
Q ss_pred hcCCCCCCCCcccCCCcceeeecCCCC
Q 033898 23 KKGTPFADDQGIYNGLTWWEQIDNGKQ 49 (109)
Q Consensus 23 vKGtPF~~~qG~y~~LT~WEQID~g~q 49 (109)
.||.|++ +-++-+--|.|+|++=+
T Consensus 90 YkG~pne---d~~~YtrVwKK~d~~WK 113 (131)
T 3hzp_A 90 YKGTQND---DLPTVTSIFKKIDEKWK 113 (131)
T ss_dssp ETTEEEE---EBCEEEEEEEEETTEEE
T ss_pred EcCccCC---cceeeehhhhhcCCcEE
Confidence 4899987 67888899999998744
No 7
>3oae_A Late major capsid protein L1; jelly roll, receptor HSPG, virus capsid, VIR protein; HET: JHM IDS; 2.80A {Human papillomavirus} PDB: 2r5h_A 2r5j_A 2r5k_A
Probab=13.29 E-value=51 Score=27.98 Aligned_cols=44 Identities=23% Similarity=0.433 Sum_probs=24.3
Q ss_pred HHHHHHhhhhhhhcCCCCCCCCcccCCCcceeeecCCC-------CCcccceeeh
Q 033898 11 FLFQVTYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGK-------QLTRNRKFLT 58 (109)
Q Consensus 11 ~h~~~ty~~fHwvKGtPF~~~qG~y~~LT~WEQID~g~-------q~TptrKFL~ 58 (109)
+|..-.=++=.|-=|- ....-|..+++|| +|=.+ ||.=.||||.
T Consensus 374 ih~Mnp~ILE~Wnlg~---ek~DPy~~~~FW~-VdL~ekfS~dLdQ~pLGRkFL~ 424 (428)
T 3oae_A 374 IHSMNSTILEDWNGGS---GGEDPLKKYTFWE-VNLKEKFSADLDQFPLGRKFLL 424 (428)
T ss_dssp HHHHHTHHHHHCC--------CCTTTTSCCEE-EECTTTCBSCGGGSHHHHHHHH
T ss_pred HHhcCchhhhhcccCC---CCCCccccceeee-eecchhhhhcccCccchhhhhh
Confidence 3444444555566565 2235688999998 44433 5556788874
No 8
>2kdr_X NS4B, P27, non-structural protein 4B; HCV, 227-254 segment, membranous WEB, replication complex, membrane, transmembrane, RNA-binding; NMR {Hepatitis c virus}
Probab=12.96 E-value=41 Score=18.51 Aligned_cols=9 Identities=44% Similarity=0.438 Sum_probs=6.7
Q ss_pred cccchhHHH
Q 033898 2 CLSSLSLLV 10 (109)
Q Consensus 2 ~~~~~~~~i 10 (109)
|||||+++-
T Consensus 10 iLssLTvTs 18 (28)
T 2kdr_X 10 ILSSLTVTQ 18 (28)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 688888763
No 9
>3iyj_F Major capsid protein L1; bovine papillomavirus BPV1, single cryo-EM, high resolution, late protein, VIR virus; 4.20A {Bovine papillomavirus type 1}
Probab=12.67 E-value=70 Score=27.63 Aligned_cols=28 Identities=32% Similarity=0.731 Sum_probs=19.4
Q ss_pred CCCcccCCCcceeeecCC-------CCCcccceeeh
Q 033898 30 DDQGIYNGLTWWEQIDNG-------KQLTRNRKFLT 58 (109)
Q Consensus 30 ~~qG~y~~LT~WEQID~g-------~q~TptrKFL~ 58 (109)
....-|..+++|| +|=. +||.=.||||.
T Consensus 433 ek~DPy~~~~FW~-VDL~ek~S~dLdQ~pLGRkFL~ 467 (495)
T 3iyj_F 433 AKEDPYAGFKFWN-IDLKEKLSLDLDQFPLGRRFLA 467 (495)
T ss_dssp SCCCGGGSSCCEE-EECSSSCBSCTTTSHHHHHHHH
T ss_pred CCCCccccceeee-eecchhhhhhccccchhhhHHh
Confidence 3446799999997 4433 35556788874
No 10
>2hx6_A Ribonuclease, GP61.9; alpha/beta fold, hydrolase; NMR {Enterobacteria phage T4}
Probab=12.61 E-value=57 Score=24.13 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=12.5
Q ss_pred eeecCCCCCcccce
Q 033898 42 EQIDNGKQLTRNRK 55 (109)
Q Consensus 42 EQID~g~q~TptrK 55 (109)
|++|+|.+|-|.|-
T Consensus 91 ~~~~~~veyRP~RL 104 (153)
T 2hx6_A 91 EDFIDGVEYRPGRL 104 (153)
T ss_dssp SSCCSSCSSCCSEE
T ss_pred hhhCccccccccee
Confidence 78999999999884
Done!