Query 033898
Match_columns 109
No_of_seqs 102 out of 131
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 12:31:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033898.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033898hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rutx4 g.39.1.3 (X:114-146) L 13.0 8.5 0.00062 20.6 -1.5 12 20-31 15-27 (33)
2 d2dloa2 g.39.1.3 (A:43-75) Thy 10.4 30 0.0022 18.3 0.2 9 23-31 9-17 (33)
3 d3cx5i1 f.23.14.1 (I:4-58) Sub 9.7 16 0.0011 21.4 -1.3 15 39-53 35-49 (55)
4 d1ppjw_ f.23.14.1 (W:) Subunit 9.3 17 0.0012 21.7 -1.3 14 39-52 41-54 (62)
5 d1xkpc1 d.198.1.1 (C:2-127) Ch 9.1 43 0.0031 22.4 0.6 12 25-36 13-25 (126)
6 d1wgva_ b.15.1.4 (A:) NudC dom 9.0 78 0.0057 19.2 1.9 19 27-46 11-29 (124)
7 d1n1qa_ a.25.1.1 (A:) Dodecame 8.6 34 0.0025 21.4 -0.1 12 17-28 27-39 (149)
8 d1ewsa_ g.9.1.1 (A:) Alpha-def 8.4 42 0.0031 17.4 0.3 10 39-48 10-19 (32)
9 d1ppjj_ f.23.14.1 (J:) Subunit 7.3 23 0.0017 18.8 -1.2 12 40-51 13-24 (33)
10 d2ptda_ c.1.18.2 (A:) Phosphat 6.9 3.3 0.00024 28.6 -6.3 43 3-50 23-65 (296)
No 1
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.04 E-value=8.5 Score=20.59 Aligned_cols=12 Identities=42% Similarity=0.935 Sum_probs=9.4
Q ss_pred hhhhcCCCC-CCC
Q 033898 20 FHWKKGTPF-ADD 31 (109)
Q Consensus 20 fHwvKGtPF-~~~ 31 (109)
||++.|+-| |.|
T Consensus 15 FHyvNG~lfCE~D 27 (33)
T d1rutx4 15 FHYINGSLFCEHD 27 (33)
T ss_dssp EEEETTEEEEGGG
T ss_pred eEEecCEEEEecC
Confidence 799999988 433
No 2
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.39 E-value=30 Score=18.33 Aligned_cols=9 Identities=44% Similarity=0.792 Sum_probs=6.5
Q ss_pred hcCCCCCCC
Q 033898 23 KKGTPFADD 31 (109)
Q Consensus 23 vKGtPF~~~ 31 (109)
..|.||+-|
T Consensus 9 LDGvPFtvD 17 (33)
T d2dloa2 9 LDGIPFTVD 17 (33)
T ss_dssp CTTSCEECC
T ss_pred cCCCcEEEc
Confidence 479999544
No 3
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.68 E-value=16 Score=21.35 Aligned_cols=15 Identities=27% Similarity=0.667 Sum_probs=11.8
Q ss_pred cceeeecCCCCCccc
Q 033898 39 TWWEQIDNGKQLTRN 53 (109)
Q Consensus 39 T~WEQID~g~q~Tpt 53 (109)
..||+++.|.|+.--
T Consensus 35 ~~we~~NkGKlWkDI 49 (55)
T d3cx5i1 35 SWYENHNKGKLWKDV 49 (55)
T ss_dssp HHHHHHTTTTSHHHH
T ss_pred HHHHhccCcccHHHH
Confidence 479999999987543
No 4
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.31 E-value=17 Score=21.72 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=11.4
Q ss_pred cceeeecCCCCCcc
Q 033898 39 TWWEQIDNGKQLTR 52 (109)
Q Consensus 39 T~WEQID~g~q~Tp 52 (109)
..||+++.|.|+.-
T Consensus 41 ~iwe~~NkGKlWKD 54 (62)
T d1ppjw_ 41 AIYEHINEGKLWKH 54 (62)
T ss_dssp HHHHHHTTTTSHHH
T ss_pred HHHHhcccccchHH
Confidence 47999999998853
No 5
>d1xkpc1 d.198.1.1 (C:2-127) Chaperone protein YscB {Yersinia pestis [TaxId: 632]}
Probab=9.08 E-value=43 Score=22.40 Aligned_cols=12 Identities=58% Similarity=1.160 Sum_probs=9.8
Q ss_pred CCCC-CCCCcccC
Q 033898 25 GTPF-ADDQGIYN 36 (109)
Q Consensus 25 GtPF-~~~qG~y~ 36 (109)
--|| .+.||+|+
T Consensus 13 ~gpFVad~qG~Y~ 25 (126)
T d1xkpc1 13 RKPFVADKQGVYR 25 (126)
T ss_dssp CCCCCCCTTSCEE
T ss_pred CCCcccCCCCceE
Confidence 3589 88899996
No 6
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.01 E-value=78 Score=19.18 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=13.0
Q ss_pred CCCCCCcccCCCcceeeecC
Q 033898 27 PFADDQGIYNGLTWWEQIDN 46 (109)
Q Consensus 27 PF~~~qG~y~~LT~WEQID~ 46 (109)
|-+.|+|..++++ |+|=++
T Consensus 11 ~~~~nG~~~~~Y~-W~Qt~~ 29 (124)
T d1wgva_ 11 PDSYNGAVRENYT-WSQDYT 29 (124)
T ss_dssp SSSSSSBCCSSCE-EEEETT
T ss_pred CCCcCCcCCCCeE-EEeECC
Confidence 4456788888874 888443
No 7
>d1n1qa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus brevis, Dps [TaxId: 1393]}
Probab=8.57 E-value=34 Score=21.37 Aligned_cols=12 Identities=50% Similarity=1.165 Sum_probs=8.3
Q ss_pred hhhhhh-hcCCCC
Q 033898 17 YHFFHW-KKGTPF 28 (109)
Q Consensus 17 y~~fHw-vKGtPF 28 (109)
+--+|| ++|..|
T Consensus 27 ~~~~HWnv~G~~F 39 (149)
T d1n1qa_ 27 LHNFHWNVNGPNF 39 (149)
T ss_dssp HHHHHHHCCSTTH
T ss_pred HhhhhhceeCCCH
Confidence 445788 777776
No 8
>d1ewsa_ g.9.1.1 (A:) Alpha-defensin rk-1 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=8.36 E-value=42 Score=17.38 Aligned_cols=10 Identities=40% Similarity=0.601 Sum_probs=7.5
Q ss_pred cceeeecCCC
Q 033898 39 TWWEQIDNGK 48 (109)
Q Consensus 39 T~WEQID~g~ 48 (109)
.-||-||..-
T Consensus 10 dpwevidgsc 19 (32)
T d1ewsa_ 10 DPWEVIDGSC 19 (32)
T ss_dssp CTTEEEEECC
T ss_pred Chhheecccc
Confidence 3699999754
No 9
>d1ppjj_ f.23.14.1 (J:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.25 E-value=23 Score=18.83 Aligned_cols=12 Identities=33% Similarity=0.606 Sum_probs=9.7
Q ss_pred ceeeecCCCCCc
Q 033898 40 WWEQIDNGKQLT 51 (109)
Q Consensus 40 ~WEQID~g~q~T 51 (109)
.||+++.|.|+.
T Consensus 13 i~d~~NkGklWK 24 (33)
T d1ppjj_ 13 IYEHINEGKLWK 24 (33)
T ss_dssp HHHHHTTTTSHH
T ss_pred HHHHhcccchHH
Confidence 688899998864
No 10
>d2ptda_ c.1.18.2 (A:) Phosphatidylinositol-specific phospholipase C {Bacillus cereus [TaxId: 1396]}
Probab=6.87 E-value=3.3 Score=28.63 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=25.3
Q ss_pred ccchhHHHHHHHHHhhhhhhhcCCCCCCCCcccCCCcceeeecCCCCC
Q 033898 3 LSSLSLLVFLFQVTYHFFHWKKGTPFADDQGIYNGLTWWEQIDNGKQL 50 (109)
Q Consensus 3 ~~~~~~~i~h~~~ty~~fHwvKGtPF~~~qG~y~~LT~WEQID~g~q~ 50 (109)
|+.|++--.|+.+||-+ +.|+-...+.-.+++..||++.|..|
T Consensus 23 l~~l~ipGtHnS~t~~~-----~~~~~~~~s~~Q~~~i~~QL~~GvR~ 65 (296)
T d2ptda_ 23 LARISIPGTHDSGTFKL-----QNPIKQVWGMTQEYDFRYQMDHGARI 65 (296)
T ss_dssp TTTSCEEEETTGGGTTC-----CCHHHHHHHCCCSSCHHHHHTTTCCE
T ss_pred eeheEeccccccccccC-----CCCcccccccCccchHHHHHHhCCcE
Confidence 44555666778777632 11221111234468999999999865
Done!