Query 033900
Match_columns 109
No_of_seqs 144 out of 740
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 12:34:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n91_A ORF, hypothetical prote 99.9 2.1E-25 7.2E-30 156.9 7.9 77 29-106 5-87 (108)
2 1jrm_A MTH0637, conserved hypo 99.9 7.3E-23 2.5E-27 142.8 5.5 75 29-107 4-86 (104)
3 3kan_A D-dopachrome tautomeras 89.5 1.5 5E-05 29.4 6.8 63 41-104 36-104 (117)
4 3fwu_A Macrophage migration in 83.1 4.5 0.00015 27.7 6.7 61 41-102 58-123 (133)
5 3djh_A Macrophage migration in 82.4 3.8 0.00013 26.9 5.9 61 41-102 36-101 (114)
6 3fwt_A Macrophage migration in 81.5 6.2 0.00021 27.0 6.8 61 41-102 58-123 (133)
7 4dh4_A MIF; trimer, isomerase; 80.7 7 0.00024 25.4 6.7 61 41-102 37-102 (114)
8 1t6a_A Rbstp2229 gene product; 77.7 1.9 6.6E-05 30.6 3.2 32 57-89 74-110 (126)
9 3b64_A Macrophage migration in 74.8 14 0.00048 23.7 7.3 60 42-102 38-102 (112)
10 2x4k_A 4-oxalocrotonate tautom 74.2 4.7 0.00016 22.7 3.8 26 77-102 23-48 (63)
11 3abf_A 4-oxalocrotonate tautom 72.0 5.4 0.00018 22.9 3.8 25 78-102 22-46 (64)
12 3t5s_A Gilaa.00834.A, macropha 71.9 13 0.00045 25.4 6.4 48 55-102 71-123 (135)
13 2opa_A Probable tautomerase YW 70.6 5.2 0.00018 22.7 3.5 25 78-102 21-45 (61)
14 1otf_A 4-oxalocrotonate tautom 69.1 5.7 0.0002 22.5 3.4 26 77-102 20-45 (62)
15 3mb2_A 4-oxalocrotonate tautom 68.8 7.5 0.00026 23.3 4.1 25 77-101 21-45 (72)
16 2wkb_A Macrophage migration in 65.1 20 0.00069 23.6 6.0 59 43-102 39-102 (125)
17 1hfo_A Migration inhibitory fa 61.5 6.9 0.00024 25.2 3.0 44 59-102 53-101 (113)
18 1uiz_A MIF, macrophage migrati 61.5 6.9 0.00023 25.4 3.0 45 58-102 53-102 (115)
19 2xcz_A Possible ATLS1-like lig 60.7 7.2 0.00025 25.2 3.0 58 44-102 40-102 (115)
20 2os5_A Acemif; macrophage migr 59.4 8.1 0.00028 25.3 3.1 59 43-102 39-102 (119)
21 3ry0_A Putative tautomerase; o 56.3 13 0.00045 21.6 3.5 26 77-102 20-45 (65)
22 3m20_A 4-oxalocrotonate tautom 55.8 12 0.00041 21.8 3.2 24 78-101 20-43 (62)
23 4hti_A Receptor-type tyrosine- 55.6 26 0.00089 23.7 5.2 36 61-96 10-45 (99)
24 3m21_A Probable tautomerase HP 55.0 11 0.00036 22.3 2.9 24 78-101 24-47 (67)
25 1gyx_A YDCE, B1461, hypothetic 54.3 11 0.00036 22.9 2.8 25 77-101 21-45 (76)
26 1mww_A Hypothetical protein HI 52.2 16 0.00055 24.0 3.7 44 59-102 56-104 (128)
27 3ej9_A Alpha-subunit of trans- 51.2 17 0.00058 22.2 3.5 26 77-102 21-46 (76)
28 1z2z_A Probable tRNA pseudouri 46.0 20 0.00069 29.1 4.0 45 59-106 46-99 (446)
29 3qor_A Nuclear migration prote 44.2 67 0.0023 21.2 6.3 44 26-69 14-60 (121)
30 3djh_A Macrophage migration in 44.2 32 0.0011 22.2 4.2 32 75-106 17-51 (114)
31 3fwu_A Macrophage migration in 43.5 21 0.00073 24.2 3.3 40 61-100 22-64 (133)
32 2lr8_A CAsp8-associated protei 48.9 5.1 0.00018 25.8 0.0 29 74-102 32-60 (70)
33 2aal_A Malonate semialdehyde d 42.6 20 0.0007 23.6 3.0 44 59-102 63-110 (131)
34 1u2c_A Dystroglycan; IG-like d 42.2 1.2E+02 0.004 23.5 8.0 24 74-97 145-168 (246)
35 1szw_A TRNA pseudouridine synt 40.5 31 0.0011 27.9 4.3 43 59-104 62-113 (379)
36 2jvf_A De novo protein M7; tet 36.5 17 0.00059 24.0 1.8 61 39-99 18-85 (96)
37 1wh0_A Ubiquitin carboxyl-term 33.4 81 0.0028 21.6 5.0 43 28-70 19-62 (134)
38 3hrd_B Nicotinate dehydrogenas 33.0 74 0.0025 24.8 5.3 41 59-99 32-72 (330)
39 3n4h_A Putative tautomerase; C 32.1 49 0.0017 22.2 3.7 42 61-102 61-107 (148)
40 2kxo_A Cell division topologic 29.8 63 0.0021 21.3 3.8 27 75-101 42-68 (95)
41 2l25_A Uncharacterized protein 28.4 1.4E+02 0.0049 20.4 5.9 60 38-97 40-108 (141)
42 1wfi_A Nuclear distribution ge 28.3 1.1E+02 0.0036 20.3 4.8 43 27-69 6-51 (131)
43 1wgv_A KIAA1068 protein; CS do 27.9 1.1E+02 0.0039 20.0 4.9 43 27-69 18-62 (124)
44 3m1y_A Phosphoserine phosphata 27.5 1E+02 0.0035 20.2 4.6 36 61-96 127-162 (217)
45 1x5m_A Calcyclin-binding prote 27.3 1.4E+02 0.0046 19.7 5.6 44 27-70 19-65 (127)
46 1oey_A P67-PHOX, neutrophil cy 26.8 38 0.0013 22.0 2.2 37 63-101 14-50 (83)
47 3tuf_A Stage III sporulation p 26.5 54 0.0019 24.6 3.3 48 52-100 147-194 (197)
48 3mlc_A FG41 malonate semialdeh 24.8 74 0.0025 21.5 3.5 42 60-102 63-109 (136)
49 3hrd_A Nicotinate dehydrogenas 24.4 59 0.002 26.1 3.4 45 55-106 192-237 (425)
50 1uew_A Membrane associated gua 24.3 1.4E+02 0.0047 18.7 5.1 54 43-100 47-100 (114)
51 2pmp_A 2-C-methyl-D-erythritol 23.9 95 0.0032 22.5 4.1 35 67-101 102-136 (160)
52 1iv3_A 2-C-methyl-D-erythritol 23.7 97 0.0033 22.3 4.1 35 67-101 99-133 (152)
53 2l9f_A CALE8, meacp; transfera 23.4 56 0.0019 22.0 2.6 28 69-96 8-35 (102)
54 2daf_A FLJ35834 protein; hypot 22.8 1.9E+02 0.0065 19.8 5.6 23 78-100 40-62 (118)
55 1t0a_A 2C-methyl-D-erythritol 22.8 1.1E+02 0.0037 22.2 4.2 34 68-101 102-135 (159)
56 4e34_A Golgi-associated PDZ an 22.6 1.3E+02 0.0043 17.7 4.7 55 43-101 32-86 (87)
57 4fei_A Heat shock protein-rela 22.4 1.4E+02 0.0047 18.8 4.4 37 32-70 11-48 (102)
58 1qav_A Alpha-1 syntrophin (res 22.3 1.3E+02 0.0045 17.8 4.4 57 42-102 33-89 (90)
59 1rl1_A Suppressor of G2 allele 22.2 1.3E+02 0.0044 19.1 4.2 37 32-70 14-51 (114)
60 1v6b_A Harmonin isoform A1; st 21.1 1.1E+02 0.0037 19.6 3.7 58 43-100 47-104 (118)
61 3b6n_A 2-C-methyl-D-erythritol 20.8 73 0.0025 23.8 3.0 35 67-101 127-161 (187)
62 1gx1_A 2-C-methyl-D-erythritol 20.6 1.3E+02 0.0043 21.9 4.2 34 68-101 101-134 (160)
63 3gla_A Low molecular weight he 20.6 1.6E+02 0.0055 18.1 4.7 38 33-72 10-48 (100)
64 3mb2_B 4-oxalocrotonate tautom 20.5 90 0.0031 20.0 3.0 24 77-100 22-45 (72)
65 3i9v_2 NADH-quinone oxidoreduc 20.4 27 0.00093 25.3 0.6 20 77-96 42-61 (181)
No 1
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A
Probab=99.92 E-value=2.1e-25 Score=156.90 Aligned_cols=77 Identities=21% Similarity=0.339 Sum_probs=73.4
Q ss_pred CcceEeeCCCeEEEEEEEecCCCccccccccCCeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceE------EEEeEE
Q 033900 29 PSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFV------ESVQVF 102 (109)
Q Consensus 29 p~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~------~~~~~~ 102 (109)
|+||++.++ +++|+|+|+|+|++++|.+++++.|+|+|+|||+||+||+||++|||+.||||+|+|+ .|.|++
T Consensus 5 m~~~~~~~~-~v~l~v~V~P~A~r~~I~g~~~~~LkV~v~ApP~dGkAN~ali~~LAk~l~V~ks~V~Iv~G~tSR~K~v 83 (108)
T 1n91_A 5 MSAVTVNDD-GLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQI 83 (108)
T ss_dssp CCSEEECSS-EEEEEEEEECSSSSCEEEEECSSCEEEECCCCSSHHHHHHHHHHHHHHHTCCCTTTEEESSCTTSSEEEE
T ss_pred cceEEECCC-eEEEEEEEeeCCCcceeecccCCEEEEEEecCCCCChHHHHHHHHHHHHhCCccceEEEEecCCCCccEE
Confidence 468888875 8999999999999999999999999999999999999999999999999999999999 789999
Q ss_pred Eeec
Q 033900 103 FLNG 106 (109)
Q Consensus 103 ~~~g 106 (109)
.|.|
T Consensus 84 ~I~~ 87 (108)
T 1n91_A 84 KIIN 87 (108)
T ss_dssp EEES
T ss_pred EEeC
Confidence 9988
No 2
>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.206.1.1
Probab=99.87 E-value=7.3e-23 Score=142.78 Aligned_cols=75 Identities=20% Similarity=0.398 Sum_probs=70.2
Q ss_pred CcceEeeCCCeEEEEEEEecCCCcccccccc--CCeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceE------EEEe
Q 033900 29 PSCIRLVPPSSVSITIHAKPGSKSCSITDVS--DEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFV------ESVQ 100 (109)
Q Consensus 29 p~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~--~~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~------~~~~ 100 (109)
++||++.++ ++.|+|+|+|+|++++|.+++ ++.|+|+|+|||+||+||++|++|||+.|| |+|+ .|.|
T Consensus 4 m~~~~~~~~-~~~l~v~v~P~A~r~~i~g~~~~~~~lkv~v~ApP~dGkAN~ali~~LAk~l~---s~V~i~~G~tsR~K 79 (104)
T 1jrm_A 4 MDCLREVGD-DLLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSETFG---RDVEIVSGQKSRQK 79 (104)
T ss_dssp CCCEEEETT-EEEEEEESCCCSSSCCCCCCCTTTTCCCCCCCTTCCCCCHHHHHHHHHHHHHS---SEEEECSCGGGSEE
T ss_pred chhEEECCC-cEEEEEEEeeCCCcceEeeeeccCCEEEEEEecCCCCChHHHHHHHHHHHHhC---CCEEEEecCCCCce
Confidence 579999886 899999999999999999965 999999999999999999999999999999 9999 7899
Q ss_pred EEEeecc
Q 033900 101 VFFLNGF 107 (109)
Q Consensus 101 ~~~~~g~ 107 (109)
++.|.|.
T Consensus 80 ~v~I~~~ 86 (104)
T 1jrm_A 80 TIRIQGM 86 (104)
T ss_dssp EEEEESC
T ss_pred EEEEcCC
Confidence 9999873
No 3
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=89.55 E-value=1.5 Score=29.38 Aligned_cols=63 Identities=8% Similarity=0.203 Sum_probs=40.5
Q ss_pred EEEEEEecCCCccccccccCCeEEEEEeCCCCC------ChhHHHHHHHHHhhcCCCCCceEEEEeEEEe
Q 033900 41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPAKD------GEANAALLEYMSSLIHVSVGEFVESVQVFFL 104 (109)
Q Consensus 41 ~L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApPvd------GkAN~aLi~~LAk~L~Vpks~I~~~~~~~~~ 104 (109)
.|.|.+.|+..- .+.|-.+...-+.|+.-..- .+-.++|+++|.+.|||++++|-+.|.-+-=
T Consensus 36 ~vmV~v~~~~~m-~fgGs~~P~a~~~v~siG~~~~~~~n~~~s~~i~~~l~~~Lgi~~~RiyI~f~d~~~ 104 (117)
T 3kan_A 36 RVNVTVRPGLAM-ALSGSTEPCAQLSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLES 104 (117)
T ss_dssp GCEEEEECSCCC-CBTTBCSSCEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECG
T ss_pred HEEEEEeCCCeE-EECCCCCceEEEEEEEecCCCcHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEEcCH
Confidence 456777886544 23444444444444443322 3334678899999999999999998876643
No 4
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=83.11 E-value=4.5 Score=27.72 Aligned_cols=61 Identities=5% Similarity=-0.012 Sum_probs=41.0
Q ss_pred EEEEEEecCCCccccccccCCeEEEEEeCCC-CCChhH----HHHHHHHHhhcCCCCCceEEEEeEE
Q 033900 41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPA-KDGEAN----AALLEYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 41 ~L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApP-vdGkAN----~aLi~~LAk~L~Vpks~I~~~~~~~ 102 (109)
.+.|.+.|+..- -+.|-.+...-+.|+.-. .....| ++|+++|.+.|||++.+|-+.|..+
T Consensus 58 ~vmV~~~~~~~m-~fgGs~dP~a~v~i~sig~~~~e~n~~~s~~i~~~l~~~LgI~~~riyI~f~d~ 123 (133)
T 3fwu_A 58 LVMMTFHDSTPM-HFFGSTDPVACVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADRIFVLYFSP 123 (133)
T ss_dssp GCEEEEECSCCC-CBTTBCSSCEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEEEECC
T ss_pred EEEEEEECCceE-EECCcCCCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEH
Confidence 456777775433 244445667777777643 333444 5678888889999999999887655
No 5
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=82.43 E-value=3.8 Score=26.89 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=39.5
Q ss_pred EEEEEEecCCCccccccccCCeEEEEEeCCCCCC-h----hHHHHHHHHHhhcCCCCCceEEEEeEE
Q 033900 41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDG-E----ANAALLEYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 41 ~L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApPvdG-k----AN~aLi~~LAk~L~Vpks~I~~~~~~~ 102 (109)
.+.|.+.|+..- .+.|-.+...-+.|+.-..-+ . --++|.++|.+.|||++++|-+.|..+
T Consensus 36 ~vmV~~~~~~~m-~fgGs~~P~a~~~v~sig~~~~~~n~~~s~~i~~~l~~~Lgi~~~riyI~f~d~ 101 (114)
T 3djh_A 36 YIAVHVVPDQLM-AFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDM 101 (114)
T ss_dssp GCEEEEECSCEE-EETTBCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEC
T ss_pred HeEEEEeCCceE-EEcCcCCCEEEEEEEEccCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEC
Confidence 556677776532 233434555555555544322 2 336788899999999999999887655
No 6
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=81.48 E-value=6.2 Score=26.97 Aligned_cols=61 Identities=5% Similarity=-0.066 Sum_probs=39.1
Q ss_pred EEEEEEecCCCccccccccCCeEEEEEeCCC-CCChhH----HHHHHHHHhhcCCCCCceEEEEeEE
Q 033900 41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPA-KDGEAN----AALLEYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 41 ~L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApP-vdGkAN----~aLi~~LAk~L~Vpks~I~~~~~~~ 102 (109)
.+.|.+.|+..- -+.|-.+...-+.|+.-. .....| ++|+++|.+.|||++.+|-+.|..+
T Consensus 58 ~v~V~~~~~~~m-~fgGs~dP~a~v~v~sig~~~~e~n~~~s~~i~~~l~~~LgI~~~rvyI~f~d~ 123 (133)
T 3fwt_A 58 FVMTAFSDKTPI-SFQGSTAPAAYVRVESWGEYAPSKPKMMTPRIAAAITKECGIPAERIYVFYYST 123 (133)
T ss_dssp CCEEEEECSCCC-CBTTBCSSCEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEE
T ss_pred EEEEEEECCceE-EECCCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEh
Confidence 566677775443 234445556666666521 233333 5678888899999999999887655
No 7
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=80.70 E-value=7 Score=25.45 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=37.5
Q ss_pred EEEEEEecCCCccccccccCCeEEEEEeCCC-CCChhH----HHHHHHHHhhcCCCCCceEEEEeEE
Q 033900 41 SITIHAKPGSKSCSITDVSDEAVGVQIDAPA-KDGEAN----AALLEYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 41 ~L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApP-vdGkAN----~aLi~~LAk~L~Vpks~I~~~~~~~ 102 (109)
.+.|.+.|+..- .+.|-.+...-+.|+.-. ...+.| ++|.++|.+.|||++++|.+.+..+
T Consensus 37 ~v~V~~~~~~~m-~fgGs~~p~a~v~i~~ig~~~~e~~~~l~~~i~~~l~~~Lgi~~~riyI~f~d~ 102 (114)
T 4dh4_A 37 YVMVGYSQTGQM-RFGGSSDPCAFIRVASIGGITSSTNCKIAAALSAACERHLGVPKNRIYTTFTNK 102 (114)
T ss_dssp GCEEEEEECSCC-CBTTBCSCCEEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEE
T ss_pred HEEEEEeCCceE-EECCcCCCeEEEEEEEEcCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEeC
Confidence 456677776521 233334444444444332 222334 5677888889999999999988766
No 8
>1t6a_A Rbstp2229 gene product; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: MSE; 2.05A {Geobacillus stearothermophilus} SCOP: d.129.8.1
Probab=77.66 E-value=1.9 Score=30.62 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=25.2
Q ss_pred cccCCeEEEEEeCCCC-----CChhHHHHHHHHHhhcC
Q 033900 57 DVSDEAVGVQIDAPAK-----DGEANAALLEYMSSLIH 89 (109)
Q Consensus 57 g~~~~~L~I~V~ApPv-----dGkAN~aLi~~LAk~L~ 89 (109)
+.+.+.--|.|.=|+. .||||+ +|+|||+.|.
T Consensus 74 ~~e~~~~fIQi~LP~~AThGDKgKANE-fckfLAK~l~ 110 (126)
T 1t6a_A 74 RTAGEETFIDIALPPGATHGDKGKANE-FSKWLAKTLG 110 (126)
T ss_dssp EEETTEEEEEEECCTTCCHHHHHHHHH-HHHHHHHHHC
T ss_pred cccCCcceEEEECCCCCCcCcchhHHH-HHHHHHHHhh
Confidence 3456677788888875 689995 8999999885
No 9
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=74.78 E-value=14 Score=23.73 Aligned_cols=60 Identities=5% Similarity=-0.004 Sum_probs=38.7
Q ss_pred EEEEEecCCCccccccccCCeEEEEEeCCC-CCChhHHH----HHHHHHhhcCCCCCceEEEEeEE
Q 033900 42 ITIHAKPGSKSCSITDVSDEAVGVQIDAPA-KDGEANAA----LLEYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 42 L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApP-vdGkAN~a----Li~~LAk~L~Vpks~I~~~~~~~ 102 (109)
+.|.+.|...- -+.|..+...-|.|+.-+ ..-+.|++ |.++|.+.||+++.+|.+.+.-+
T Consensus 38 ~~v~~~~~~~~-~~~G~~~~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~ 102 (112)
T 3b64_A 38 VMMTFHDSTPM-HFFGSTDPVACVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADRIFVLYFSP 102 (112)
T ss_dssp CEEEEECSCCC-CBTTBCSSCEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEEEECC
T ss_pred EEEEEeCCceE-EECCCCCCEEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEh
Confidence 34455554332 233455677788887665 44555554 55677888999999999776543
No 10
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=74.17 E-value=4.7 Score=22.72 Aligned_cols=26 Identities=0% Similarity=-0.034 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhcCCCCCceEEEEeEE
Q 033900 77 NAALLEYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 77 N~aLi~~LAk~L~Vpks~I~~~~~~~ 102 (109)
-++|.+.|++.||+|..++...+..+
T Consensus 23 ~~~l~~~l~~~lg~p~~~v~v~i~e~ 48 (63)
T 2x4k_A 23 VSEVTDAVEKTTGANRQAIHVVIEEM 48 (63)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEEEEE
T ss_pred HHHHHHHHHHHhCcCcccEEEEEEEc
Confidence 46677888999999999999777654
No 11
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=71.96 E-value=5.4 Score=22.87 Aligned_cols=25 Identities=20% Similarity=0.062 Sum_probs=20.1
Q ss_pred HHHHHHHHhhcCCCCCceEEEEeEE
Q 033900 78 AALLEYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 78 ~aLi~~LAk~L~Vpks~I~~~~~~~ 102 (109)
++|.+.|++.||+|..+|...+.-+
T Consensus 22 ~~lt~~l~~~lg~~~~~v~V~i~e~ 46 (64)
T 3abf_A 22 RRLTEMASRLLGEPYEEVRVILYEV 46 (64)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEEEEE
T ss_pred HHHHHHHHHHhCCCcccEEEEEEEc
Confidence 4566788889999999999777654
No 12
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=71.88 E-value=13 Score=25.37 Aligned_cols=48 Identities=15% Similarity=0.059 Sum_probs=33.2
Q ss_pred cccccCCeEEEEEeCCC-----CCChhHHHHHHHHHhhcCCCCCceEEEEeEE
Q 033900 55 ITDVSDEAVGVQIDAPA-----KDGEANAALLEYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 55 I~g~~~~~L~I~V~ApP-----vdGkAN~aLi~~LAk~L~Vpks~I~~~~~~~ 102 (109)
+.|-.+...-+.|+.-. .+-+=-++|+++|.+.||||+.+|-+.|..+
T Consensus 71 fgGs~dp~a~v~i~sig~~t~e~n~~~s~~i~~~l~~~Lgi~~~riyI~f~d~ 123 (135)
T 3t5s_A 71 FGTSTDLCCFVDFYCIGVISQAKNPSISAAITGCLTQHFKVKPERVYISFNEA 123 (135)
T ss_dssp BTTBCCSCEEEEEECCC-----CCHHHHHHHHHHHHHHHCCCGGGEEEEEEC-
T ss_pred cCcccceEEEEEEEEEEEEeccCCchHHHHHHHHHHHhcccCccEEEEEeccc
Confidence 33445566666666543 2234447788999999999999999887655
No 13
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=70.58 E-value=5.2 Score=22.73 Aligned_cols=25 Identities=12% Similarity=0.070 Sum_probs=20.1
Q ss_pred HHHHHHHHhhcCCCCCceEEEEeEE
Q 033900 78 AALLEYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 78 ~aLi~~LAk~L~Vpks~I~~~~~~~ 102 (109)
++|.+.|++.||+|..+|...+..+
T Consensus 21 ~~i~~~l~~~lg~~~~~v~V~i~e~ 45 (61)
T 2opa_A 21 EKVTEAVKETTGASEEKIVVFIEEM 45 (61)
T ss_dssp HHHHHHHHHHHCCCGGGCEEEEEEE
T ss_pred HHHHHHHHHHhCcCcCeEEEEEEEc
Confidence 4566788888999999999777654
No 14
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=69.06 E-value=5.7 Score=22.53 Aligned_cols=26 Identities=8% Similarity=0.050 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhcCCCCCceEEEEeEE
Q 033900 77 NAALLEYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 77 N~aLi~~LAk~L~Vpks~I~~~~~~~ 102 (109)
-++|.+.|.+.||+|..++...+..+
T Consensus 20 ~~~i~~~l~~~lg~p~~~v~v~i~e~ 45 (62)
T 1otf_A 20 IRQVSEAMANSLDAPLERVRVLITEM 45 (62)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEEEEE
T ss_pred HHHHHHHHHHHhCcCcccEEEEEEEe
Confidence 35667788899999999999776644
No 15
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=68.76 E-value=7.5 Score=23.34 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhcCCCCCceEEEEeE
Q 033900 77 NAALLEYMSSLIHVSVGEFVESVQV 101 (109)
Q Consensus 77 N~aLi~~LAk~L~Vpks~I~~~~~~ 101 (109)
-++|.+.|++.||+|..+|...+..
T Consensus 21 ~~~it~~l~~~lg~p~~~v~V~i~e 45 (72)
T 3mb2_A 21 ARALSAAAAAAFDVPLAEVRLIIQE 45 (72)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHhCCCcccEEEEEEE
Confidence 3567788889999999999977765
No 16
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=65.08 E-value=20 Score=23.62 Aligned_cols=59 Identities=7% Similarity=0.011 Sum_probs=33.7
Q ss_pred EEEEecCCCccccccccCCeEEEEEeCCC-CCChhH----HHHHHHHHhhcCCCCCceEEEEeEE
Q 033900 43 TIHAKPGSKSCSITDVSDEAVGVQIDAPA-KDGEAN----AALLEYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 43 ~V~VkP~Ak~~~I~g~~~~~L~I~V~ApP-vdGkAN----~aLi~~LAk~L~Vpks~I~~~~~~~ 102 (109)
.|.+.|...- -+.+-.+...-|.|+.-. ..-+.| ++|.++|.+.||+++.+|.+.+.-+
T Consensus 39 ~V~~~~~~~~-~~gg~~dp~~~v~I~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~ 102 (125)
T 2wkb_A 39 MSNYDYQKNL-RFSGSNEGYCFVRLTSIGGINRSNNSLLADKITKILSNHLSVKPRRVYIEFRDC 102 (125)
T ss_dssp EEEEEECTTC-EETTBCSSCEEEEEECC-----CTHHHHHHHHHHHHHHHHCCCGGGEEEEEEC-
T ss_pred EEEEEcCCce-EeCCCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEC
Confidence 3444454322 122334566667776544 233334 4566788888999999999776543
No 17
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=61.49 E-value=6.9 Score=25.20 Aligned_cols=44 Identities=7% Similarity=0.056 Sum_probs=30.5
Q ss_pred cCCeEEEEEeCCC-CCChhHHH----HHHHHHhhcCCCCCceEEEEeEE
Q 033900 59 SDEAVGVQIDAPA-KDGEANAA----LLEYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 59 ~~~~L~I~V~ApP-vdGkAN~a----Li~~LAk~L~Vpks~I~~~~~~~ 102 (109)
.+...-|.|+.-. ..-+.|++ |.++|.+.||+++.+|.+.+.-+
T Consensus 53 ~~~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~ 101 (113)
T 1hfo_A 53 TNPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYIHFVNL 101 (113)
T ss_dssp CSSCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEC
T ss_pred CCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEEC
Confidence 4566777777554 34445554 55677888999999999877543
No 18
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=61.46 E-value=6.9 Score=25.35 Aligned_cols=45 Identities=9% Similarity=0.121 Sum_probs=30.9
Q ss_pred ccCCeEEEEEeCCC-CCChhHH----HHHHHHHhhcCCCCCceEEEEeEE
Q 033900 58 VSDEAVGVQIDAPA-KDGEANA----ALLEYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 58 ~~~~~L~I~V~ApP-vdGkAN~----aLi~~LAk~L~Vpks~I~~~~~~~ 102 (109)
-.+...-|.|+.-+ ..-+.|+ +|.++|.+.||+++.+|.+.+.-+
T Consensus 53 ~~~~~~~v~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~ 102 (115)
T 1uiz_A 53 STDPCAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYINYYDL 102 (115)
T ss_dssp BCSSCEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEC
T ss_pred CCCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEC
Confidence 34566777777554 3444554 455677888999999999877643
No 19
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=60.69 E-value=7.2 Score=25.24 Aligned_cols=58 Identities=7% Similarity=0.107 Sum_probs=35.7
Q ss_pred EEEecCCCccccccccCCeEEEEEeCCC-CCChhHHH----HHHHHHhhcCCCCCceEEEEeEE
Q 033900 44 IHAKPGSKSCSITDVSDEAVGVQIDAPA-KDGEANAA----LLEYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 44 V~VkP~Ak~~~I~g~~~~~L~I~V~ApP-vdGkAN~a----Li~~LAk~L~Vpks~I~~~~~~~ 102 (109)
|.+.|...- .+.+-.+...-|.|+.-+ ..-+.|++ |.++|.+.||+++.+|.+.+.-+
T Consensus 40 v~~~~~~~~-~~~g~~~~~~~v~i~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~ 102 (115)
T 2xcz_A 40 TSLQCGVPM-TFSGNTEPTCYVEVKSIGALDGSRTQEVSELVCGHIEQNLGIPADRIYIGFEDV 102 (115)
T ss_dssp EEEECSCCC-CBTTBCSSCEEEEEEESSCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEC
T ss_pred EEEECCCce-EECCCCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEC
Confidence 444554332 233445566666666543 44455554 55677888999999999877644
No 20
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=59.37 E-value=8.1 Score=25.27 Aligned_cols=59 Identities=5% Similarity=0.165 Sum_probs=36.0
Q ss_pred EEEEecCCCccccccccCCeEEEEEeCCC-CCChhHHH----HHHHHHhhcCCCCCceEEEEeEE
Q 033900 43 TIHAKPGSKSCSITDVSDEAVGVQIDAPA-KDGEANAA----LLEYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 43 ~V~VkP~Ak~~~I~g~~~~~L~I~V~ApP-vdGkAN~a----Li~~LAk~L~Vpks~I~~~~~~~ 102 (109)
.|.+.|...- -+.+-.+...-|.|+.-+ ..-+.|++ |.++|.+.||+++.+|.+.+.-+
T Consensus 39 ~v~~~~~~~~-~~~g~~~~~~~i~I~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~ 102 (119)
T 2os5_A 39 AIEVLAGQRI-THGASRNPVAVIKVESIGALSADDNIRHTQKITQFCQDTLKLPKDKVIITYFDL 102 (119)
T ss_dssp EEEEECSCCC-CBTTBCSSCEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEC
T ss_pred EEEEECCccE-EEcCCCCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEC
Confidence 3444554322 122334566667776544 44455544 55677888999999999877654
No 21
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=56.34 E-value=13 Score=21.62 Aligned_cols=26 Identities=15% Similarity=0.017 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhcCCCCCceEEEEeEE
Q 033900 77 NAALLEYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 77 N~aLi~~LAk~L~Vpks~I~~~~~~~ 102 (109)
-++|.+.|.+.||+|..++...+..+
T Consensus 20 ~~~it~~~~~~lg~p~~~v~V~i~e~ 45 (65)
T 3ry0_A 20 GEALTAAAHETLGTPVEAVRVIVEET 45 (65)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEEEEE
T ss_pred HHHHHHHHHHHhCcCcccEEEEEEEc
Confidence 45677888899999999999776554
No 22
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=55.82 E-value=12 Score=21.80 Aligned_cols=24 Identities=4% Similarity=0.025 Sum_probs=18.8
Q ss_pred HHHHHHHHhhcCCCCCceEEEEeE
Q 033900 78 AALLEYMSSLIHVSVGEFVESVQV 101 (109)
Q Consensus 78 ~aLi~~LAk~L~Vpks~I~~~~~~ 101 (109)
++|.+.+++.||+|..+|...+.-
T Consensus 20 ~~it~~~~~~lg~~~~~v~V~i~E 43 (62)
T 3m20_A 20 ERLTSVAAEIYGMDRSAITILIHE 43 (62)
T ss_dssp HHHHHHHHHHHTCCTTSCEEEEEC
T ss_pred HHHHHHHHHHhCcCcceEEEEEEE
Confidence 456677888899999999876653
No 23
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=55.59 E-value=26 Score=23.67 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=30.2
Q ss_pred CeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceE
Q 033900 61 EAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFV 96 (109)
Q Consensus 61 ~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~ 96 (109)
+.--|-+..+|.+=..-..|++.||+.|+++.+...
T Consensus 10 eygYIvt~~~~l~~~~G~~l~~~la~~l~l~~~~F~ 45 (99)
T 4hti_A 10 ARGYIVTDRDPLRPEEGRRLVEDVARLLQVPSSAFA 45 (99)
T ss_dssp CCEEEEESCSSCCHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHHHHhCCchhhee
Confidence 445566777888888889999999999999988876
No 24
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=54.97 E-value=11 Score=22.25 Aligned_cols=24 Identities=8% Similarity=0.184 Sum_probs=19.8
Q ss_pred HHHHHHHHhhcCCCCCceEEEEeE
Q 033900 78 AALLEYMSSLIHVSVGEFVESVQV 101 (109)
Q Consensus 78 ~aLi~~LAk~L~Vpks~I~~~~~~ 101 (109)
++|.+.|++.||+|..+|...+..
T Consensus 24 ~~lt~~l~~~lg~p~~~v~V~i~e 47 (67)
T 3m21_A 24 EGVSDLMVKVLNKNKASIVVIIDE 47 (67)
T ss_dssp HHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHCcCcccEEEEEEE
Confidence 567788889999999999977654
No 25
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=54.35 E-value=11 Score=22.95 Aligned_cols=25 Identities=8% Similarity=0.078 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhcCCCCCceEEEEeE
Q 033900 77 NAALLEYMSSLIHVSVGEFVESVQV 101 (109)
Q Consensus 77 N~aLi~~LAk~L~Vpks~I~~~~~~ 101 (109)
-++|.+.|.+.||+|..+|...+..
T Consensus 21 ~~~l~~~l~~~lgip~~~v~V~i~e 45 (76)
T 1gyx_A 21 AADITDVIIRHLNSKDSSISIALQQ 45 (76)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHhCcCCceEEEEEEE
Confidence 4567778889999999999876654
No 26
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=52.15 E-value=16 Score=24.01 Aligned_cols=44 Identities=9% Similarity=0.146 Sum_probs=29.9
Q ss_pred cCCeEEEEEe-CCCCCChhHHH----HHHHHHhhcCCCCCceEEEEeEE
Q 033900 59 SDEAVGVQID-APAKDGEANAA----LLEYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 59 ~~~~L~I~V~-ApPvdGkAN~a----Li~~LAk~L~Vpks~I~~~~~~~ 102 (109)
.+..+.|.|+ -+...-+.+++ |.+.|++.||+++.+|.+.+.-+
T Consensus 56 ~~~~~~i~i~~~~grt~eqK~~l~~~l~~~l~~~lg~~~~~v~V~i~e~ 104 (128)
T 1mww_A 56 SDDYTVIEINLMAGRMEGTKKRLIKMLFSELEYKLGIRAHDVEITIKEQ 104 (128)
T ss_dssp CTTCEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEE
T ss_pred CCCcEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEC
Confidence 3466777777 33344445544 55677788999999999777654
No 27
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=51.21 E-value=17 Score=22.21 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhcCCCCCceEEEEeEE
Q 033900 77 NAALLEYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 77 N~aLi~~LAk~L~Vpks~I~~~~~~~ 102 (109)
-++|.+.|++.||+|..+|...+..+
T Consensus 21 ~~~it~~l~~~lg~p~~~v~V~i~E~ 46 (76)
T 3ej9_A 21 SAGLLRVISEATGEPRENIFFVIREG 46 (76)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEEEEE
T ss_pred HHHHHHHHHHHHCcCcccEEEEEEEe
Confidence 35677888899999999999776543
No 28
>1z2z_A Probable tRNA pseudouridine synthase D; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Methanosarcina mazei}
Probab=46.03 E-value=20 Score=29.15 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=37.3
Q ss_pred cCCeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceE---------EEEeEEEeec
Q 033900 59 SDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFV---------ESVQVFFLNG 106 (109)
Q Consensus 59 ~~~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~---------~~~~~~~~~g 106 (109)
.++.+.+.|. -+|.-..+++..||+.|||+.++|. +++|.|-|-|
T Consensus 46 ~G~~l~f~l~---K~n~dT~~a~~~Lak~lgi~~~~i~yAG~KDk~AvT~Q~~sv~~ 99 (446)
T 1z2z_A 46 EGKYLIVELT---KRDWDTHHLTRTLSRILQVSQKRISVAGTKDKRALTTQKISIFD 99 (446)
T ss_dssp CSSEEEEEEE---EESCCHHHHHHHHHHHHTCCGGGEEESSCCCSSSEEEEEEEEET
T ss_pred CCCEEEEEEE---EcCCCHHHHHHHHHHHhCcChHhEeECccccCCeeEEEEEEEEC
Confidence 4567777776 4788899999999999999999998 7888887644
No 29
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A
Probab=44.23 E-value=67 Score=21.25 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=30.4
Q ss_pred CCCCcceEeeCCCeEEEEEEEecC--C-CccccccccCCeEEEEEeC
Q 033900 26 ENLPSCIRLVPPSSVSITIHAKPG--S-KSCSITDVSDEAVGVQIDA 69 (109)
Q Consensus 26 ~~~p~~i~~~~~g~v~L~V~VkP~--A-k~~~I~g~~~~~L~I~V~A 69 (109)
.++|.+........+.|.|.+.++ . .++-.+.+..+.|.|.++.
T Consensus 14 ~~~~~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~kg 60 (121)
T 3qor_A 14 ADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKG 60 (121)
T ss_dssp CBCSSCEEEECSSEEEEEEECCCSSCCCGGGEEEEEETTEEEEEETT
T ss_pred CcCCCEEEEEccceEEEEEECCCCCcccccceEEEEEcCEEEEEEcC
Confidence 456655555555689999998876 3 3444456788999998874
No 30
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=44.23 E-value=32 Score=22.24 Aligned_cols=32 Identities=9% Similarity=0.032 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHhhcCCCCCceEEEEe---EEEeec
Q 033900 75 EANAALLEYMSSLIHVSVGEFVESVQ---VFFLNG 106 (109)
Q Consensus 75 kAN~aLi~~LAk~L~Vpks~I~~~~~---~~~~~g 106 (109)
.--.+|-+.+|+.+|-|.+.|-..+. .|++.|
T Consensus 17 ~~~~~ls~~~a~~lgKpe~~vmV~~~~~~~m~fgG 51 (114)
T 3djh_A 17 GFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGG 51 (114)
T ss_dssp THHHHHHHHHHHHHCCCGGGCEEEEECSCEEEETT
T ss_pred HHHHHHHHHHHHHHCCCHHHeEEEEeCCceEEEcC
Confidence 45678899999999999999997765 677776
No 31
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=43.49 E-value=21 Score=24.23 Aligned_cols=40 Identities=3% Similarity=0.049 Sum_probs=30.3
Q ss_pred CeEEEEEeCCCCCChh---HHHHHHHHHhhcCCCCCceEEEEe
Q 033900 61 EAVGVQIDAPAKDGEA---NAALLEYMSSLIHVSVGEFVESVQ 100 (109)
Q Consensus 61 ~~L~I~V~ApPvdGkA---N~aLi~~LAk~L~Vpks~I~~~~~ 100 (109)
-.++|.+..+..+-.. =++|-+.||+.||.|.+.|-..+.
T Consensus 22 P~i~i~tnv~~s~~~~~~l~~~ls~~la~~lgKPe~~vmV~~~ 64 (133)
T 3fwu_A 22 PVIQTFVSTPLDHHKRENLAQVYRAVTRDVLGKPEDLVMMTFH 64 (133)
T ss_dssp CEEEEEESSCCCHHHHHHHHHHHHHHHHHTSCSCGGGCEEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHCcCccEEEEEEE
Confidence 4577888776655433 447889999999999999886654
No 32
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=48.89 E-value=5.1 Score=25.81 Aligned_cols=29 Identities=10% Similarity=0.232 Sum_probs=25.1
Q ss_pred ChhHHHHHHHHHhhcCCCCCceEEEEeEE
Q 033900 74 GEANAALLEYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 74 GkAN~aLi~~LAk~L~Vpks~I~~~~~~~ 102 (109)
+=++..-...||+.|+-+..+|+.||+++
T Consensus 32 ~G~s~~tfa~iA~~Lnks~~QV~~RF~~L 60 (70)
T 2lr8_A 32 RGPSSKTFAYLAAKLDKNPNQVSERFQQL 60 (70)
Confidence 34566788999999999999999999886
No 33
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=42.56 E-value=20 Score=23.65 Aligned_cols=44 Identities=9% Similarity=0.077 Sum_probs=31.3
Q ss_pred cCCeEEEEEeCCCCCChhHHHHH----HHHHhhcCCCCCceEEEEeEE
Q 033900 59 SDEAVGVQIDAPAKDGEANAALL----EYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 59 ~~~~L~I~V~ApPvdGkAN~aLi----~~LAk~L~Vpks~I~~~~~~~ 102 (109)
.+..+.|.|+.....-+.+++|+ +.|++.||+++.+|.+.+.-+
T Consensus 63 ~~~~~~I~i~~~grt~eqK~~l~~~l~~~l~~~lg~~~~~v~I~i~e~ 110 (131)
T 2aal_A 63 SSAVVLLTVISRPRSEEQKVCFYKLLTGALERDCGISPDDVIVALVEN 110 (131)
T ss_dssp CTTCEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEC
T ss_pred CCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEc
Confidence 34677888885555556666555 566778899999999776544
No 34
>1u2c_A Dystroglycan; IG-like domain, S6 like fold, protein binding; 2.30A {Mus musculus} SCOP: b.1.6.2 d.272.1.1
Probab=42.16 E-value=1.2e+02 Score=23.48 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=19.0
Q ss_pred ChhHHHHHHHHHhhcCCCCCceEE
Q 033900 74 GEANAALLEYMSSLIHVSVGEFVE 97 (109)
Q Consensus 74 GkAN~aLi~~LAk~L~Vpks~I~~ 97 (109)
.+.=-+|++-++++++++.+.+++
T Consensus 145 p~~Rv~Ll~~~~~f~~v~~~~~~l 168 (246)
T 1u2c_A 145 PKQRIDLLNRMQSFSEVELHNMKL 168 (246)
T ss_dssp HHHHHHHHHHHHHHHCSCGGGCEE
T ss_pred HHHHHHHHHHHHHHhccchhheEe
Confidence 344456899999999999998873
No 35
>1szw_A TRNA pseudouridine synthase D; novel fold, RNA modification, TRUD, structural proteomics in europe, spine, structural genomics; 2.00A {Escherichia coli} SCOP: d.265.1.4 PDB: 1si7_A 1sb7_A
Probab=40.49 E-value=31 Score=27.85 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=35.0
Q ss_pred cCCeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceE---------EEEeEEEe
Q 033900 59 SDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFV---------ESVQVFFL 104 (109)
Q Consensus 59 ~~~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~---------~~~~~~~~ 104 (109)
.++.+.+.|. -+|.-..++++.||+.|+|+.++|. +++|.|-|
T Consensus 62 ~G~~l~~~l~---K~n~~T~~a~~~Lak~lgi~~~~i~yAGlKDk~AvT~Q~~sv 113 (379)
T 1szw_A 62 EGEHILVRIL---KNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCA 113 (379)
T ss_dssp CSSEEEEEEE---ESSSCHHHHHHHHHHHTTCCGGGEEESCCCCTTSEEEEEEEE
T ss_pred CcCEEEEEEE---EcCCCHHHHHHHHHHHhCcCHHhEeECccccCCEEEEEEEEE
Confidence 3467777776 4788899999999999999999998 67776653
No 36
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=36.50 E-value=17 Score=23.98 Aligned_cols=61 Identities=23% Similarity=0.358 Sum_probs=38.3
Q ss_pred eEEEEEEEecCCCccc-cccc-----cCCeEEEEEeCCCCCChhHHHHHHHHHhhc-CCCCCceEEEE
Q 033900 39 SVSITIHAKPGSKSCS-ITDV-----SDEAVGVQIDAPAKDGEANAALLEYMSSLI-HVSVGEFVESV 99 (109)
Q Consensus 39 ~v~L~V~VkP~Ak~~~-I~g~-----~~~~L~I~V~ApPvdGkAN~aLi~~LAk~L-~Vpks~I~~~~ 99 (109)
.+.|.|+|..+-.-.. +..+ ..+.-.+.|+--+++.+--++|++++|+.| .+.-.+|..|+
T Consensus 18 eieidirvstgkeleralqelekalaragarnvqitisaendeqakelleliarllqklgykdinvrv 85 (96)
T 2jvf_A 18 EIEIDIRVSTGKELERALQELEKALARAGARNVQITISAENDEQAKELLELIARLLQKLGYKDINVRV 85 (96)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHHHHHHHTCSEEEEEEECSSHHHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred EEEEEEEEcccHHHHHHHHHHHHHHHhccccceEEEEEecChHHHHHHHHHHHHHHHHhCCCceEEEE
Confidence 5777777766532221 1111 114555666666788888899999999987 45555666554
No 37
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=33.40 E-value=81 Score=21.56 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=28.2
Q ss_pred CCcceEeeC-CCeEEEEEEEecCCCccccccccCCeEEEEEeCC
Q 033900 28 LPSCIRLVP-PSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAP 70 (109)
Q Consensus 28 ~p~~i~~~~-~g~v~L~V~VkP~Ak~~~I~g~~~~~L~I~V~Ap 70 (109)
.+.+-+... +..|.|.|.++--.+.+-.+.+.++.|.|.+..+
T Consensus 19 ~~r~~W~Qt~~~~V~vtI~~k~v~~~~v~V~f~~~~l~v~~~~~ 62 (134)
T 1wh0_A 19 FVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTR 62 (134)
T ss_dssp CCCEEEEEETTTEEEEEEECCSBCTTSCEEEECSSEEEEEECBC
T ss_pred CCCeEEEcCCCCEEEEEEEeCCCCcccCEEEEECCEEEEEEEcC
Confidence 344444333 5589999998643344445567889999988654
No 38
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=33.01 E-value=74 Score=24.76 Aligned_cols=41 Identities=10% Similarity=0.099 Sum_probs=33.9
Q ss_pred cCCeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceEEEE
Q 033900 59 SDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVESV 99 (109)
Q Consensus 59 ~~~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~~~~ 99 (109)
.|+.+.|.+.....--=.+..+....|+.|||+.++|+...
T Consensus 32 ~DG~V~v~~g~~emGQG~~T~laQIaAe~Lgi~~e~V~v~~ 72 (330)
T 3hrd_B 32 GDGSANVMFGAADIGQGSGTAMAQIAAEELGLDYEKIHVTW 72 (330)
T ss_dssp TTSCEEEEECCCCSSSCHHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCeEEEEECCCCCCCCHHHHHHHHHHHHhCCCHHHEEEEe
Confidence 36788888887777656888899999999999999998653
No 39
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=32.11 E-value=49 Score=22.24 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=26.2
Q ss_pred CeEEEEEeCCC-CCChhHH----HHHHHHHhhcCCCCCceEEEEeEE
Q 033900 61 EAVGVQIDAPA-KDGEANA----ALLEYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 61 ~~L~I~V~ApP-vdGkAN~----aLi~~LAk~L~Vpks~I~~~~~~~ 102 (109)
+.+.|.|.... ..-+.++ +|.+.|++.||+|..+|...+..+
T Consensus 61 ~~~~I~i~~~~Grt~eqk~~l~~~l~~~l~~~lgi~~~~v~V~i~E~ 107 (148)
T 3n4h_A 61 NHIWVQATIRSGRTEKQKEELLLRLTQEIALILGIPNEEVWVYITEI 107 (148)
T ss_dssp TCEEEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEE
T ss_pred cEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHhCcCcCcEEEEEEEc
Confidence 44555444332 2334444 456677788899999999776654
No 40
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=29.75 E-value=63 Score=21.30 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHhhcCCCCCceEEEEeE
Q 033900 75 EANAALLEYMSSLIHVSVGEFVESVQV 101 (109)
Q Consensus 75 kAN~aLi~~LAk~L~Vpks~I~~~~~~ 101 (109)
+==++|++.+++++.|...+|+..+.+
T Consensus 42 ~lk~eIl~VIsKYv~Id~~~v~V~l~~ 68 (95)
T 2kxo_A 42 TLRKALMEVLSKYVNVSLDNIRISQEK 68 (95)
T ss_dssp HHHHHHHHHHHHHSCCCTTSEEEEEEE
T ss_pred HHHHHHHHHHHHheecchhheEEEEEe
Confidence 334789999999999999999976654
No 41
>2l25_A Uncharacterized protein; JCSG, structural genomics, PSI-biology, protein structure in joint center for structural genomics; NMR {Bordetella bronchiseptica}
Probab=28.41 E-value=1.4e+02 Score=20.36 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=45.9
Q ss_pred CeEEEEEEEecCCCccccccc----cCCeEEEEEeCCCCCCh-hHHHHHHHHHhhcC----CCCCceEE
Q 033900 38 SSVSITIHAKPGSKSCSITDV----SDEAVGVQIDAPAKDGE-ANAALLEYMSSLIH----VSVGEFVE 97 (109)
Q Consensus 38 g~v~L~V~VkP~Ak~~~I~g~----~~~~L~I~V~ApPvdGk-AN~aLi~~LAk~L~----Vpks~I~~ 97 (109)
++..|++.+.|+.....=.+. +-+.+.|.|-.|+-.|. +..++.+-|+++|. +..+.++.
T Consensus 40 ~~~ylr~~~~p~~t~~~~lg~~~~~~~Gv~qi~v~~p~g~G~~~~~~iAd~l~~~F~~~~~l~~~~~~v 108 (141)
T 2l25_A 40 AGVYLRAYVMPAATISRDAAGDHRQYRGVFQVNVVMPIGDGSRSAEQVAAELDALFPVNLVMQSGGLAV 108 (141)
T ss_dssp TTBEEEEEEECCCCCCCCSSSCCCCCCEEEEEEEEEECSSSCCTHHHHHHHHHHHCCTTCCEECSSSEE
T ss_pred CCeEEEEEEcCCCceecccCCCccEEEEEEEEEEEeeCCCCchHHHHHHHHHHHHhhccceeeeCCEEE
Confidence 578999999999877644442 23789999999999996 57788889999985 44555543
No 42
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4
Probab=28.28 E-value=1.1e+02 Score=20.33 Aligned_cols=43 Identities=7% Similarity=0.108 Sum_probs=28.4
Q ss_pred CCCcceEeeCCCeEEEEEEEecC--C-CccccccccCCeEEEEEeC
Q 033900 27 NLPSCIRLVPPSSVSITIHAKPG--S-KSCSITDVSDEAVGVQIDA 69 (109)
Q Consensus 27 ~~p~~i~~~~~g~v~L~V~VkP~--A-k~~~I~g~~~~~L~I~V~A 69 (109)
..|.+.+......+.|.|.+.++ . +++-.+.+....|.|.+..
T Consensus 6 ~~~~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~kg 51 (131)
T 1wfi_A 6 SGPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKG 51 (131)
T ss_dssp SCCSSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEETT
T ss_pred CCCcEEEEecCCEEEEEEECCCCCcccccceEEEEeCCEEEEEECC
Confidence 34445444444578888888776 3 3444456788999999863
No 43
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Probab=27.87 E-value=1.1e+02 Score=20.01 Aligned_cols=43 Identities=7% Similarity=-0.007 Sum_probs=29.6
Q ss_pred CCCcceEeeCCCeEEEEEEEecCC-C-ccccccccCCeEEEEEeC
Q 033900 27 NLPSCIRLVPPSSVSITIHAKPGS-K-SCSITDVSDEAVGVQIDA 69 (109)
Q Consensus 27 ~~p~~i~~~~~g~v~L~V~VkP~A-k-~~~I~g~~~~~L~I~V~A 69 (109)
..|.+.+......+.|.|.|.++. + ++-.+.+....|.|.+..
T Consensus 18 ~~~~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~~~~l~v~~~~ 62 (124)
T 1wgv_A 18 VRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLE 62 (124)
T ss_dssp CCSSCEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEEC
T ss_pred cCCcEEEEEcccEEEEEEEcCCCCCchhheEEEEEcCEEEEEEEc
Confidence 445555544445899999998775 3 443456788999999865
No 44
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=27.47 E-value=1e+02 Score=20.20 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=27.6
Q ss_pred CeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceE
Q 033900 61 EAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFV 96 (109)
Q Consensus 61 ~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~ 96 (109)
+.+...+..+...|+-..+.++.+++.+|++..++-
T Consensus 127 ~~~~~~~~~~~~~~k~k~~~~~~~~~~~g~~~~~~i 162 (217)
T 3m1y_A 127 DALNGLVTGHMMFSHSKGEMLLVLQRLLNISKTNTL 162 (217)
T ss_dssp TEEEEEEEESCCSTTHHHHHHHHHHHHHTCCSTTEE
T ss_pred CEEEeeeccCCCCCCChHHHHHHHHHHcCCCHhHEE
Confidence 334444556666788899999999999999988753
No 45
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.34 E-value=1.4e+02 Score=19.71 Aligned_cols=44 Identities=7% Similarity=-0.022 Sum_probs=28.7
Q ss_pred CCCcceEeeCCCeEEEEEEEecC---CCccccccccCCeEEEEEeCC
Q 033900 27 NLPSCIRLVPPSSVSITIHAKPG---SKSCSITDVSDEAVGVQIDAP 70 (109)
Q Consensus 27 ~~p~~i~~~~~g~v~L~V~VkP~---Ak~~~I~g~~~~~L~I~V~Ap 70 (109)
.++.+-+......|.|.|.++-- ...+-.+.+.+..|.|.+..+
T Consensus 19 ~~~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~~~~l~v~~~~~ 65 (127)
T 1x5m_A 19 KISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNL 65 (127)
T ss_dssp ECCSCEEEEETTEEEEEEECTTTTTSCTTSEEEEECSSEEEEEECSC
T ss_pred CccEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEEcCEEEEEEEcC
Confidence 34444444444589999998843 334445567889999998654
No 46
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=26.77 E-value=38 Score=21.97 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=28.5
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceEEEEeE
Q 033900 63 VGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVESVQV 101 (109)
Q Consensus 63 L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~~~~~~ 101 (109)
..|.|+.|+ |-.=..|.+.|++.|+++...+.++|+-
T Consensus 14 ~tvairvp~--~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 14 YTVVMKTQP--GLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp SEEEEEECT--TCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEECCC--CCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 345555555 4455789999999999999999999874
No 47
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=26.46 E-value=54 Score=24.56 Aligned_cols=48 Identities=4% Similarity=0.210 Sum_probs=37.5
Q ss_pred ccccccccCCeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceEEEEe
Q 033900 52 SCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVESVQ 100 (109)
Q Consensus 52 ~~~I~g~~~~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~~~~~ 100 (109)
.++|+.++++.+.|-|.+.-..-+-=..|++++.+.+||.+. |++.|+
T Consensus 147 ~DAVV~i~dd~V~VVVka~~Ls~~eaaqI~DIV~r~tgv~~d-V~Vqf~ 194 (197)
T 3tuf_A 147 EDALVNAEGDKINITVKSDKHSKSKATAIIDLVAKEIKTMKD-VAVTFE 194 (197)
T ss_dssp SCEEEECSSSEEEEEEECSCCCHHHHHHHHHTSCHHHHTTSE-EEEEEE
T ss_pred CceEEEecCCEEEEEEeCCCCCHHHHHHHHHHHHHhhCCCCc-eEEEee
Confidence 456777788888888887766666667788999999998776 777765
No 48
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=24.81 E-value=74 Score=21.46 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=28.1
Q ss_pred CCeEEEEEeC-CCCCChhHH----HHHHHHHhhcCCCCCceEEEEeEE
Q 033900 60 DEAVGVQIDA-PAKDGEANA----ALLEYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 60 ~~~L~I~V~A-pPvdGkAN~----aLi~~LAk~L~Vpks~I~~~~~~~ 102 (109)
++.+.|.|+. ++..-+.=+ +|.+.| +.||+++.+|.+.+..+
T Consensus 63 ~~~v~I~I~~~~gRt~EqK~~L~~~it~~l-~~lg~~~~~v~V~i~E~ 109 (136)
T 3mlc_A 63 PSVVIIHVFTQAGRTIETKQRVFAAITESL-APIGVAGSDVFIAITEN 109 (136)
T ss_dssp SCCEEEEEEEETTCCHHHHHHHHHHHHHHH-TTTTCCGGGEEEEEEEE
T ss_pred CCeEEEEEEECCCCCHHHHHHHHHHHHHHH-HHcCCCcccEEEEEEEc
Confidence 4667777775 344434433 455666 77899999999777654
No 49
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=24.45 E-value=59 Score=26.15 Aligned_cols=45 Identities=4% Similarity=0.014 Sum_probs=31.4
Q ss_pred ccccc-CCeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceEEEEeEEEeec
Q 033900 55 ITDVS-DEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVESVQVFFLNG 106 (109)
Q Consensus 55 I~g~~-~~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~~~~~~~~~~g 106 (109)
+.-++ ++.|.|....+-.. .+...||+.||+|.++|++... ++-|
T Consensus 192 ~A~~~~~g~l~v~~stQ~p~-----~~r~~vA~~Lglp~~~VrV~~~--~vGG 237 (425)
T 3hrd_A 192 VSYYDNEGMLTVVVSTQNPH-----YDRGEVAGMLALPNSKVRIIQA--TTGG 237 (425)
T ss_dssp EEEECTTCCEEEEECCSCHH-----HHHHHHHHHTTCCGGGEEEEEC--BCCC
T ss_pred EEEECCCCeEEEEECCCCHH-----HHHHHHHHHhCCChhhEEEEeC--CCCC
Confidence 33344 46888888766443 5678899999999999976543 4444
No 50
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=24.29 E-value=1.4e+02 Score=18.73 Aligned_cols=54 Identities=6% Similarity=-0.032 Sum_probs=38.4
Q ss_pred EEEEecCCCccccccccCCeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceEEEEe
Q 033900 43 TIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVESVQ 100 (109)
Q Consensus 43 ~V~VkP~Ak~~~I~g~~~~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~~~~~ 100 (109)
-..|.|++....-.++..+-..+.|.--++.+.-.+++.++|.+ +...|++.+.
T Consensus 47 V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~~----~g~~v~l~v~ 100 (114)
T 1uew_A 47 IGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD----AGLSVTLRII 100 (114)
T ss_dssp EEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHH----TTTEEEEEEC
T ss_pred EEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHc----CCCeEEEEEE
Confidence 34677887665424566677778999999988767788888875 4566666554
No 51
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=23.88 E-value=95 Score=22.53 Aligned_cols=35 Identities=11% Similarity=0.032 Sum_probs=28.7
Q ss_pred EeCCCCCChhHHHHHHHHHhhcCCCCCceEEEEeE
Q 033900 67 IDAPAKDGEANAALLEYMSSLIHVSVGEFVESVQV 101 (109)
Q Consensus 67 V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~~~~~~ 101 (109)
|.+.|-=+-=-+++.+.||+.|+++.++|.+..++
T Consensus 102 i~q~PKi~p~~~~m~~~ia~~L~~~~~~V~vKAtT 136 (160)
T 2pmp_A 102 ILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKT 136 (160)
T ss_dssp ECSSSCCGGGHHHHHHHHHHHHTCCGGGEEEEEEC
T ss_pred EecCCcCHHHHHHHHHHHHHHHCCCcceEEEEEec
Confidence 34567777778899999999999999999876554
No 52
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=23.73 E-value=97 Score=22.30 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=28.5
Q ss_pred EeCCCCCChhHHHHHHHHHhhcCCCCCceEEEEeE
Q 033900 67 IDAPAKDGEANAALLEYMSSLIHVSVGEFVESVQV 101 (109)
Q Consensus 67 V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~~~~~~ 101 (109)
|.+.|.=+-=-+++.+.||+.|+++.++|.+..++
T Consensus 99 i~q~PKi~p~~~~m~~~ia~~L~~~~~~V~vKAtT 133 (152)
T 1iv3_A 99 TLDRPKLGPHRKALVDSLSRLMRLPQDRIGLTFKT 133 (152)
T ss_dssp ECSSSCCGGGHHHHHHHHHHHHTCCGGGEEEEEEC
T ss_pred EecCCcCHHHHHHHHHHHHHHhCCCCceEEEEEec
Confidence 44557777778999999999999999999866543
No 53
>2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora}
Probab=23.40 E-value=56 Score=21.96 Aligned_cols=28 Identities=11% Similarity=-0.007 Sum_probs=22.9
Q ss_pred CCCCCChhHHHHHHHHHhhcCCCCCceE
Q 033900 69 APAKDGEANAALLEYMSSLIHVSVGEFV 96 (109)
Q Consensus 69 ApPvdGkAN~aLi~~LAk~L~Vpks~I~ 96 (109)
+-|.--.--+.|.++|++.|+++.+.|+
T Consensus 8 ~~~~~~~I~~~V~~ilaE~lev~~e~Vt 35 (102)
T 2l9f_A 8 ALPAATGALELVRHLVAERAELPVEVLR 35 (102)
T ss_dssp SCSSSCCHHHHHHHHHHHHTTSCSSSCC
T ss_pred ccchHHHHHHHHHHHHHHHHCCCHHHcC
Confidence 4455556678899999999999999887
No 54
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.80 E-value=1.9e+02 Score=19.82 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=20.2
Q ss_pred HHHHHHHHhhcCCCCCceEEEEe
Q 033900 78 AALLEYMSSLIHVSVGEFVESVQ 100 (109)
Q Consensus 78 ~aLi~~LAk~L~Vpks~I~~~~~ 100 (109)
.+|-+.||+.+++|.+++.+.|.
T Consensus 40 ~dLKe~ls~~~~iP~e~qrLIy~ 62 (118)
T 2daf_A 40 KYLKDHFSHLLGIPHSVLQIRYS 62 (118)
T ss_dssp HHHHHHHHHHHTCCTTTEEEEET
T ss_pred HHHHHHHHhhhCCChHHEEEEEC
Confidence 68899999999999999987663
No 55
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=22.76 E-value=1.1e+02 Score=22.21 Aligned_cols=34 Identities=6% Similarity=0.070 Sum_probs=27.6
Q ss_pred eCCCCCChhHHHHHHHHHhhcCCCCCceEEEEeE
Q 033900 68 DAPAKDGEANAALLEYMSSLIHVSVGEFVESVQV 101 (109)
Q Consensus 68 ~ApPvdGkAN~aLi~~LAk~L~Vpks~I~~~~~~ 101 (109)
.+.|-=+-=-+++.+.||+.|+++.++|.+..++
T Consensus 102 ~q~PKi~p~~~~m~~~ia~~L~~~~~~V~vKAtT 135 (159)
T 1t0a_A 102 AQAPKMAPHIEDMRQVLAADLNADVADINVKATT 135 (159)
T ss_dssp CSSSCCGGGHHHHHHHHHHHTTCCGGGEEEEEEC
T ss_pred cCCCcChHHHHHHHHHHHHHhCCCCceEEEEEec
Confidence 3446666777899999999999999999976554
No 56
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=22.57 E-value=1.3e+02 Score=17.69 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=40.2
Q ss_pred EEEEecCCCccccccccCCeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceEEEEeE
Q 033900 43 TIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVESVQV 101 (109)
Q Consensus 43 ~V~VkP~Ak~~~I~g~~~~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~~~~~~ 101 (109)
--.|.|++....-.++..+-..+.|.-.++.+....+++.+|.. +...+++.++.
T Consensus 32 V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~----~~~~v~l~v~~ 86 (87)
T 4e34_A 32 ISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ----QRGEIEFEVVY 86 (87)
T ss_dssp EEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHH----CCSEEEEEEEE
T ss_pred EEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc----CCCeEEEEEEE
Confidence 35788987765434677778889999999999988888888864 33456665543
No 57
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=22.44 E-value=1.4e+02 Score=18.77 Aligned_cols=37 Identities=14% Similarity=0.263 Sum_probs=27.5
Q ss_pred eEeeCCCeEEEEEEEecCCCccccc-cccCCeEEEEEeCC
Q 033900 32 IRLVPPSSVSITIHAKPGSKSCSIT-DVSDEAVGVQIDAP 70 (109)
Q Consensus 32 i~~~~~g~v~L~V~VkP~Ak~~~I~-g~~~~~L~I~V~Ap 70 (109)
|...++ .+.|.+.+ ||.+++.|. .++++.|.|+-.-.
T Consensus 11 i~e~~~-~~~v~~~l-PG~~~edi~v~~~~~~L~I~g~~~ 48 (102)
T 4fei_A 11 WRDAGT-HLDLLLDV-PGVDAGTLALAEDGGQLTVSGERP 48 (102)
T ss_dssp EEEETT-EEEEEEEC-TTCCGGGCEEEEETTEEEEEEEEC
T ss_pred EEEcCC-EEEEEEEC-CCCchHhEEEEEECCEEEEEEEEe
Confidence 444454 78888887 999988874 56789999876654
No 58
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=22.28 E-value=1.3e+02 Score=17.79 Aligned_cols=57 Identities=7% Similarity=0.018 Sum_probs=40.5
Q ss_pred EEEEEecCCCccccccccCCeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceEEEEeEE
Q 033900 42 ITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVESVQVF 102 (109)
Q Consensus 42 L~V~VkP~Ak~~~I~g~~~~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~~~~~~~ 102 (109)
+-..|.|++....-.++..+-..+.|.--++.+..-.+++.++... ...|++.+.++
T Consensus 33 ~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~----~~~v~l~v~r~ 89 (90)
T 1qav_A 33 LISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT----GKEVVLEVKYM 89 (90)
T ss_dssp EEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTC----CSEEEEEEEEC
T ss_pred EEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC----CCeEEEEEEEe
Confidence 3447788876654435677788899999999998777777777642 35577777654
No 59
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3
Probab=22.20 E-value=1.3e+02 Score=19.08 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=25.6
Q ss_pred eEeeCCCeEEEEEEEecCCCccc-cccccCCeEEEEEeCC
Q 033900 32 IRLVPPSSVSITIHAKPGSKSCS-ITDVSDEAVGVQIDAP 70 (109)
Q Consensus 32 i~~~~~g~v~L~V~VkP~Ak~~~-I~g~~~~~L~I~V~Ap 70 (109)
|.+.. ..+.|.|.+. +.+... -+.+.++.|.|++..+
T Consensus 14 W~Qt~-~~V~v~i~l~-~v~~~~v~v~~~~~~l~v~~~~~ 51 (114)
T 1rl1_A 14 WYQTE-SQVVITLMIK-NVQKNDVNVEFSEKELSALVKLP 51 (114)
T ss_dssp EEECS-SEEEEEECCC-SCCGGGEEEECSSSCEEEEEECT
T ss_pred EEeCC-CEEEEEEEeC-CCCHHHCEEEEEcCEEEEEEEeC
Confidence 44545 4899999986 665433 3467788999998763
No 60
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=21.10 E-value=1.1e+02 Score=19.55 Aligned_cols=58 Identities=9% Similarity=-0.123 Sum_probs=39.9
Q ss_pred EEEEecCCCccccccccCCeEEEEEeCCCCCChhHHHHHHHHHhhcCCCCCceEEEEe
Q 033900 43 TIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSLIHVSVGEFVESVQ 100 (109)
Q Consensus 43 ~V~VkP~Ak~~~I~g~~~~~L~I~V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~~~~~ 100 (109)
-..|.|++....-.++..+-..+.|.--++.+...+++.+.|....+-+-..|++.+.
T Consensus 47 I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~ 104 (118)
T 1v6b_A 47 VSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVA 104 (118)
T ss_dssp EEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred EEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEE
Confidence 3467777666544356666666899999999988888888888765333445555443
No 61
>3b6n_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; malaria isoprenoid biosynthesis and prenylation pathways ISPF; 2.26A {Plasmodium vivax sai-1}
Probab=20.78 E-value=73 Score=23.76 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=29.1
Q ss_pred EeCCCCCChhHHHHHHHHHhhcCCCCCceEEEEeE
Q 033900 67 IDAPAKDGEANAALLEYMSSLIHVSVGEFVESVQV 101 (109)
Q Consensus 67 V~ApPvdGkAN~aLi~~LAk~L~Vpks~I~~~~~~ 101 (109)
|.+.|-=+-=-+++.+.||+.|+++.++|.+.-++
T Consensus 127 iaq~PKi~p~~~~m~~nia~~L~i~~~~VnVKAtT 161 (187)
T 3b6n_A 127 IAEVPKISPIREEIVRNISSALGISESQVSLKGKT 161 (187)
T ss_dssp ECSSSCSHHHHHHHHHHHHHHHTCCGGGEEEEEEC
T ss_pred EeCCCcchHHHHHHHHHHHHHhCCCcceEEEEEec
Confidence 45667777778899999999999999999976554
No 62
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=20.63 E-value=1.3e+02 Score=21.86 Aligned_cols=34 Identities=3% Similarity=-0.024 Sum_probs=27.6
Q ss_pred eCCCCCChhHHHHHHHHHhhcCCCCCceEEEEeE
Q 033900 68 DAPAKDGEANAALLEYMSSLIHVSVGEFVESVQV 101 (109)
Q Consensus 68 ~ApPvdGkAN~aLi~~LAk~L~Vpks~I~~~~~~ 101 (109)
.+.|-=+-=-+++.+.||+.|+++.++|.+..++
T Consensus 101 ~q~PKi~p~~~~m~~~ia~~L~~~~~~V~vKAtT 134 (160)
T 1gx1_A 101 AQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATT 134 (160)
T ss_dssp CSSSCCGGGHHHHHHHHHHHTTCCGGGEEEEEEC
T ss_pred cCCCcchHHHHHHHHHHHHHhCCCCceEEEEEcc
Confidence 3446666777899999999999999999976554
No 63
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=20.59 E-value=1.6e+02 Score=18.14 Aligned_cols=38 Identities=8% Similarity=0.184 Sum_probs=28.0
Q ss_pred EeeCCCeEEEEEEEecCCCccccc-cccCCeEEEEEeCCCC
Q 033900 33 RLVPPSSVSITIHAKPGSKSCSIT-DVSDEAVGVQIDAPAK 72 (109)
Q Consensus 33 ~~~~~g~v~L~V~VkP~Ak~~~I~-g~~~~~L~I~V~ApPv 72 (109)
...+ +.+.|.+.+ ||.+++.|. .++++.|.|+-.....
T Consensus 10 ~e~~-~~~~v~~~l-PG~~~edi~v~~~~~~L~I~g~~~~~ 48 (100)
T 3gla_A 10 KEEV-NHFVLYADL-PGIDPSQIEVQMDKGILSIRGERKSE 48 (100)
T ss_dssp EECS-SEEEEEEEC-TTSCGGGCEEEEETTEEEEEEEECCG
T ss_pred EECC-CEEEEEEEC-CCCCHHHEEEEEECCEEEEEEEEcCc
Confidence 3444 478888877 999888875 5678999998766554
No 64
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=20.46 E-value=90 Score=20.00 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhcCCCCCceEEEEe
Q 033900 77 NAALLEYMSSLIHVSVGEFVESVQ 100 (109)
Q Consensus 77 N~aLi~~LAk~L~Vpks~I~~~~~ 100 (109)
=+|+-+.+++.+|.++.+|.+.+-
T Consensus 22 aeE~T~if~evLGcpPgsV~IVi~ 45 (72)
T 3mb2_B 22 AAEASAIFQRVIGTPPGRLQLIIQ 45 (72)
T ss_dssp HHHHHHHHHHHHCCCTTCCEEEEE
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEE
Confidence 467888999999999999986553
No 65
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=20.38 E-value=27 Score=25.26 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhcCCCCCceE
Q 033900 77 NAALLEYMSSLIHVSVGEFV 96 (109)
Q Consensus 77 N~aLi~~LAk~L~Vpks~I~ 96 (109)
-++.++++|+.|++|.++|.
T Consensus 42 ~~~~~~~iA~~l~l~~~~V~ 61 (181)
T 3i9v_2 42 RPERIEEIARLVGTTPTEVM 61 (181)
T ss_dssp CHHHHHHHHHHHTSCHHHHH
T ss_pred CHHHHHHHHHHhCcCHHHHH
Confidence 36789999999999999886
Done!