Query 033901
Match_columns 109
No_of_seqs 27 out of 29
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 07:34:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033901.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033901hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02209 ftsL_broad cell divi 95.3 0.088 1.9E-06 34.3 6.2 57 33-89 2-58 (85)
2 PRK00888 ftsB cell division pr 95.0 0.098 2.1E-06 37.0 5.9 36 49-84 28-63 (105)
3 PRK13169 DNA replication intia 92.5 0.28 6.2E-06 35.5 4.6 54 54-107 28-81 (110)
4 PF06305 DUF1049: Protein of u 92.0 0.29 6.3E-06 30.6 3.7 31 44-74 37-67 (68)
5 PF06156 DUF972: Protein of un 91.9 0.39 8.5E-06 34.4 4.7 54 54-107 28-84 (107)
6 PF00170 bZIP_1: bZIP transcri 91.4 0.5 1.1E-05 29.9 4.4 35 53-87 24-58 (64)
7 TIGR02209 ftsL_broad cell divi 90.3 1 2.2E-05 29.2 5.2 49 35-83 9-59 (85)
8 PF04977 DivIC: Septum formati 89.7 1.4 3E-05 27.7 5.3 30 52-81 21-50 (80)
9 smart00338 BRLZ basic region l 88.5 1.1 2.5E-05 28.2 4.3 35 53-87 24-58 (65)
10 PF04999 FtsL: Cell division p 88.1 2.1 4.6E-05 28.7 5.6 48 33-80 13-67 (97)
11 PF04977 DivIC: Septum formati 87.8 1 2.3E-05 28.3 3.8 47 42-88 4-50 (80)
12 PF10828 DUF2570: Protein of u 87.3 3.6 7.7E-05 28.9 6.6 38 34-71 4-41 (110)
13 PF04999 FtsL: Cell division p 87.2 2.7 5.9E-05 28.1 5.7 26 51-76 45-70 (97)
14 PF02183 HALZ: Homeobox associ 86.9 1.6 3.5E-05 27.1 4.1 32 55-86 12-43 (45)
15 PHA03162 hypothetical protein; 85.0 1 2.3E-05 34.2 3.1 31 49-79 7-37 (135)
16 COG4467 Regulator of replicati 84.4 1 2.2E-05 33.5 2.7 52 54-107 28-85 (114)
17 COG3159 Uncharacterized protei 83.6 1.6 3.5E-05 35.4 3.8 55 53-107 50-108 (218)
18 PF07716 bZIP_2: Basic region 83.6 3 6.4E-05 25.7 4.2 32 53-84 23-54 (54)
19 COG2919 Septum formation initi 82.8 4 8.6E-05 29.1 5.2 43 40-84 44-86 (117)
20 PF06005 DUF904: Protein of un 80.1 4.4 9.4E-05 27.3 4.4 32 54-85 24-62 (72)
21 PF07407 Seadorna_VP6: Seadorn 79.7 2.6 5.6E-05 36.9 3.9 31 57-87 34-64 (420)
22 PRK14872 rod shape-determining 79.1 8.4 0.00018 32.7 6.7 35 53-88 55-89 (337)
23 PF06103 DUF948: Bacterial pro 78.4 12 0.00026 24.8 6.0 52 36-87 9-65 (90)
24 PF11853 DUF3373: Protein of u 78.1 3.2 7E-05 36.9 4.1 49 34-83 4-59 (489)
25 PF11853 DUF3373: Protein of u 77.3 1.5 3.3E-05 38.9 1.9 23 63-85 32-54 (489)
26 KOG3119 Basic region leucine z 76.9 4.1 8.9E-05 32.8 4.1 38 51-88 218-255 (269)
27 PF07047 OPA3: Optic atrophy 3 76.2 8.4 0.00018 28.0 5.2 64 18-83 69-133 (134)
28 PF00170 bZIP_1: bZIP transcri 75.7 8.1 0.00018 24.3 4.5 32 54-85 32-63 (64)
29 PF05812 Herpes_BLRF2: Herpesv 75.3 4.1 8.9E-05 30.3 3.4 25 56-80 4-28 (118)
30 PF11382 DUF3186: Protein of u 74.6 12 0.00025 30.7 6.2 35 52-86 29-63 (308)
31 smart00338 BRLZ basic region l 74.5 7.8 0.00017 24.3 4.2 33 54-86 32-64 (65)
32 PF01920 Prefoldin_2: Prefoldi 74.4 7.9 0.00017 25.4 4.3 34 54-87 68-101 (106)
33 PHA03155 hypothetical protein; 72.9 4.4 9.6E-05 30.1 3.1 24 56-79 9-32 (115)
34 COG2919 Septum formation initi 71.4 28 0.00061 24.7 6.9 52 34-85 29-80 (117)
35 COG4839 FtsL Protein required 68.8 18 0.0004 27.0 5.6 55 31-85 36-90 (120)
36 PRK14127 cell division protein 68.0 10 0.00023 27.5 4.1 32 56-87 38-69 (109)
37 PRK15396 murein lipoprotein; P 67.8 37 0.0008 23.4 6.7 52 33-87 5-57 (78)
38 PF10205 KLRAQ: Predicted coil 67.4 11 0.00024 27.3 4.1 55 31-87 18-72 (102)
39 KOG4196 bZIP transcription fac 66.2 12 0.00027 28.5 4.3 40 49-88 71-114 (135)
40 PF15058 Speriolin_N: Sperioli 64.7 13 0.00028 30.0 4.3 38 57-94 7-49 (200)
41 PF01166 TSC22: TSC-22/dip/bun 64.6 8.7 0.00019 25.7 2.9 23 54-76 20-42 (59)
42 PF14775 NYD-SP28_assoc: Sperm 64.5 9.6 0.00021 24.7 3.0 24 56-79 34-57 (60)
43 PRK13922 rod shape-determining 64.3 23 0.00049 27.7 5.6 28 54-81 68-95 (276)
44 COG3074 Uncharacterized protei 63.7 18 0.00038 25.4 4.4 31 57-87 41-71 (79)
45 PF11932 DUF3450: Protein of u 62.7 29 0.00063 27.0 5.9 51 51-101 80-130 (251)
46 PF07200 Mod_r: Modifier of ru 61.4 25 0.00055 25.0 5.0 66 39-104 39-104 (150)
47 COG3883 Uncharacterized protei 60.9 19 0.0004 29.9 4.8 51 55-105 52-111 (265)
48 TIGR00219 mreC rod shape-deter 60.3 17 0.00038 29.3 4.5 31 56-86 67-97 (283)
49 PRK15422 septal ring assembly 60.2 22 0.00048 24.9 4.4 33 54-86 24-70 (79)
50 PF02344 Myc-LZ: Myc leucine z 60.1 19 0.00042 21.5 3.5 26 58-83 4-29 (32)
51 TIGR03752 conj_TIGR03752 integ 60.0 12 0.00027 33.3 3.8 31 54-84 72-102 (472)
52 KOG4343 bZIP transcription fac 59.5 10 0.00022 35.1 3.2 25 54-78 308-332 (655)
53 cd00632 Prefoldin_beta Prefold 59.4 24 0.00051 24.2 4.4 48 38-87 50-102 (105)
54 PF14584 DUF4446: Protein of u 59.4 45 0.00098 25.1 6.3 30 57-86 48-77 (151)
55 PF14712 Snapin_Pallidin: Snap 59.3 32 0.0007 22.6 4.9 32 56-87 15-46 (92)
56 PF00521 DNA_topoisoIV: DNA gy 59.0 12 0.00026 31.7 3.4 43 42-85 379-425 (426)
57 PF10267 Tmemb_cc2: Predicted 58.2 33 0.0007 29.8 6.0 41 49-89 206-246 (395)
58 PF12709 Kinetocho_Slk19: Cent 57.5 22 0.00047 25.2 4.0 34 54-87 48-84 (87)
59 TIGR02449 conserved hypothetic 56.9 25 0.00054 23.5 4.1 50 55-104 7-61 (65)
60 PRK10803 tol-pal system protei 56.9 17 0.00038 28.9 3.9 30 54-83 60-89 (263)
61 COG3074 Uncharacterized protei 56.7 19 0.00041 25.3 3.5 20 56-75 26-45 (79)
62 PF13801 Metal_resist: Heavy-m 56.7 31 0.00067 22.1 4.4 41 50-93 43-83 (125)
63 PF15397 DUF4618: Domain of un 55.9 15 0.00033 30.2 3.5 37 52-88 197-233 (258)
64 PF04880 NUDE_C: NUDE protein, 55.3 6.9 0.00015 30.2 1.3 24 62-85 24-47 (166)
65 cd00890 Prefoldin Prefoldin is 53.4 32 0.00069 23.3 4.3 34 54-87 93-126 (129)
66 COG3116 FtsL Cell division pro 53.2 89 0.0019 23.0 6.9 73 15-91 4-76 (105)
67 PF09307 MHC2-interact: CLIP, 53.1 4.5 9.7E-05 29.8 0.0 38 33-70 38-75 (114)
68 cd00187 TOP4c DNA Topoisomeras 51.9 32 0.00069 30.0 5.0 46 40-86 391-443 (445)
69 KOG4426 Arginyl-tRNA synthetas 51.1 33 0.00072 31.6 5.1 49 58-106 32-82 (656)
70 PRK00888 ftsB cell division pr 50.9 77 0.0017 22.3 6.0 34 55-88 27-60 (105)
71 KOG0977 Nuclear envelope prote 49.5 26 0.00057 31.8 4.2 35 54-88 161-195 (546)
72 PF07989 Microtub_assoc: Micro 49.3 32 0.00069 23.1 3.7 30 57-86 2-31 (75)
73 PF05377 FlaC_arch: Flagella a 48.3 39 0.00084 22.1 3.8 30 56-85 8-37 (55)
74 PRK11637 AmiB activator; Provi 48.3 73 0.0016 26.6 6.4 34 52-85 44-77 (428)
75 PF01763 Herpes_UL6: Herpesvir 47.9 31 0.00067 31.3 4.4 33 55-87 370-402 (557)
76 TIGR02338 gimC_beta prefoldin, 47.8 46 0.001 23.0 4.4 50 38-87 54-106 (110)
77 PF00038 Filament: Intermediat 47.4 38 0.00082 26.5 4.4 37 52-88 220-256 (312)
78 PF02646 RmuC: RmuC family; I 46.5 81 0.0017 25.6 6.2 65 21-86 196-264 (304)
79 PF05524 PEP-utilisers_N: PEP- 45.9 66 0.0014 22.0 5.0 49 55-103 28-76 (123)
80 PF10883 DUF2681: Protein of u 45.4 1E+02 0.0022 21.6 5.9 39 45-83 20-58 (87)
81 KOG1760 Molecular chaperone Pr 44.5 46 0.00099 25.4 4.2 46 38-87 68-120 (131)
82 COG4839 FtsL Protein required 44.5 68 0.0015 24.0 5.1 61 19-81 31-93 (120)
83 KOG2577 Transcription factor E 44.4 58 0.0013 28.2 5.3 53 54-106 143-199 (354)
84 PRK10963 hypothetical protein; 44.3 34 0.00074 26.5 3.6 40 53-92 49-91 (223)
85 PF09602 PhaP_Bmeg: Polyhydrox 44.2 46 0.001 26.0 4.3 46 42-89 30-75 (165)
86 PRK14160 heat shock protein Gr 44.1 43 0.00093 26.7 4.2 32 57-88 56-87 (211)
87 KOG4797 Transcriptional regula 44.0 23 0.00051 26.6 2.6 40 39-78 56-97 (123)
88 PF07106 TBPIP: Tat binding pr 43.5 72 0.0016 23.3 5.1 38 57-94 74-111 (169)
89 PF09812 MRP-L28: Mitochondria 43.4 54 0.0012 24.8 4.5 41 55-95 82-125 (157)
90 KOG3119 Basic region leucine z 43.3 43 0.00094 27.0 4.2 39 49-87 208-247 (269)
91 PF10211 Ax_dynein_light: Axon 42.3 1.1E+02 0.0024 23.4 6.1 39 47-85 111-150 (189)
92 KOG4603 TBP-1 interacting prot 42.0 38 0.00082 27.4 3.6 41 47-87 108-148 (201)
93 PF14077 WD40_alt: Alternative 41.9 25 0.00054 22.7 2.1 23 54-76 17-39 (48)
94 PF04340 DUF484: Protein of un 41.7 33 0.00072 26.1 3.2 55 53-107 52-110 (225)
95 KOG3863 bZIP transcription fac 41.6 37 0.0008 31.3 3.9 32 55-86 518-549 (604)
96 PF08232 Striatin: Striatin fa 41.5 59 0.0013 23.7 4.4 38 54-91 31-68 (134)
97 PF06005 DUF904: Protein of un 41.4 62 0.0013 21.7 4.1 29 56-84 19-47 (72)
98 KOG3850 Predicted membrane pro 41.1 55 0.0012 29.3 4.8 35 53-87 257-292 (455)
99 PRK09413 IS2 repressor TnpA; R 41.1 37 0.00081 23.7 3.1 22 57-78 80-101 (121)
100 PRK04325 hypothetical protein; 41.0 96 0.0021 20.6 5.0 44 44-87 12-55 (74)
101 PF05103 DivIVA: DivIVA protei 40.8 13 0.00029 25.4 0.8 29 57-85 27-55 (131)
102 PF14992 TMCO5: TMCO5 family 40.8 28 0.00061 29.1 2.9 38 50-87 58-95 (280)
103 PF14265 DUF4355: Domain of un 40.5 66 0.0014 22.3 4.3 45 53-101 47-91 (125)
104 PF10168 Nup88: Nuclear pore c 40.4 40 0.00086 31.1 4.0 68 16-83 533-607 (717)
105 KOG4196 bZIP transcription fac 39.9 75 0.0016 24.3 4.8 32 55-86 88-119 (135)
106 PF09813 Coiled-coil_56: Coile 39.3 35 0.00076 24.9 2.8 32 38-69 60-91 (100)
107 TIGR03495 phage_LysB phage lys 39.1 1.6E+02 0.0035 22.1 6.4 42 37-78 8-49 (135)
108 PF03980 Nnf1: Nnf1 ; InterPr 38.9 41 0.00089 23.0 3.0 32 52-83 77-108 (109)
109 KOG4005 Transcription factor X 38.6 25 0.00054 29.7 2.2 28 48-75 90-117 (292)
110 KOG3156 Uncharacterized membra 38.4 47 0.001 27.2 3.7 34 62-95 116-149 (220)
111 PF08537 NBP1: Fungal Nap bind 38.2 60 0.0013 27.9 4.4 42 53-94 180-227 (323)
112 PRK00846 hypothetical protein; 37.8 1.3E+02 0.0029 20.6 5.6 45 43-87 15-59 (77)
113 PF13600 DUF4140: N-terminal d 37.7 45 0.00098 22.3 3.0 33 53-85 68-100 (104)
114 PRK10884 SH3 domain-containing 37.6 63 0.0014 25.4 4.2 25 57-81 134-158 (206)
115 PF08286 Spc24: Spc24 subunit 37.0 13 0.00027 26.2 0.2 33 55-87 13-45 (118)
116 PF14389 Lzipper-MIP1: Leucine 36.8 84 0.0018 21.5 4.3 34 55-88 54-87 (88)
117 cd00584 Prefoldin_alpha Prefol 36.7 80 0.0017 21.9 4.3 32 54-85 93-124 (129)
118 PF10186 Atg14: UV radiation r 36.7 92 0.002 23.6 4.9 45 43-87 58-102 (302)
119 PF08172 CASP_C: CASP C termin 36.2 52 0.0011 26.5 3.7 31 52-82 104-134 (248)
120 KOG4343 bZIP transcription fac 36.0 56 0.0012 30.4 4.2 41 53-93 300-340 (655)
121 PRK10265 chaperone-modulator p 35.7 56 0.0012 22.6 3.3 25 57-81 73-97 (101)
122 PF04375 HemX: HemX; InterPro 35.5 2.6E+02 0.0057 23.3 9.1 26 53-78 58-84 (372)
123 PRK02793 phi X174 lysis protei 35.3 96 0.0021 20.5 4.3 42 46-87 13-54 (72)
124 PF13815 Dzip-like_N: Iguana/D 35.2 84 0.0018 22.1 4.2 29 57-85 82-110 (118)
125 PF07106 TBPIP: Tat binding pr 35.2 59 0.0013 23.8 3.5 37 47-83 101-137 (169)
126 PF10224 DUF2205: Predicted co 34.6 66 0.0014 22.2 3.5 27 55-81 37-63 (80)
127 PF07558 Shugoshin_N: Shugoshi 34.5 54 0.0012 20.1 2.8 28 51-78 17-44 (46)
128 PF01741 MscL: Large-conductan 34.5 78 0.0017 23.2 4.1 49 32-80 75-123 (128)
129 PF11932 DUF3450: Protein of u 34.4 77 0.0017 24.6 4.3 28 57-84 58-85 (251)
130 COG1730 GIM5 Predicted prefold 34.4 82 0.0018 23.8 4.3 35 54-88 100-134 (145)
131 TIGR01834 PHA_synth_III_E poly 34.1 51 0.0011 28.0 3.4 30 54-83 288-317 (320)
132 PRK10772 cell division protein 34.0 1.8E+02 0.0039 21.1 5.8 64 23-91 15-78 (108)
133 PF13600 DUF4140: N-terminal d 34.0 94 0.002 20.8 4.1 26 60-85 68-93 (104)
134 TIGR02894 DNA_bind_RsfA transc 34.0 76 0.0016 24.8 4.1 31 55-85 111-141 (161)
135 PF10018 Med4: Vitamin-D-recep 33.9 83 0.0018 23.7 4.3 36 54-89 28-63 (188)
136 PF04156 IncA: IncA protein; 33.9 1.9E+02 0.0041 21.1 6.0 15 40-54 54-68 (191)
137 PF12911 OppC_N: N-terminal TM 33.9 80 0.0017 18.8 3.4 27 22-48 7-33 (56)
138 PRK13729 conjugal transfer pil 33.6 56 0.0012 29.3 3.7 21 52-72 73-93 (475)
139 KOG4571 Activating transcripti 33.4 76 0.0016 27.0 4.3 53 17-81 222-274 (294)
140 PRK11677 hypothetical protein; 33.1 1.8E+02 0.004 21.7 5.9 27 45-71 18-45 (134)
141 PRK09343 prefoldin subunit bet 32.8 1.2E+02 0.0026 21.6 4.7 51 39-89 59-112 (121)
142 PRK10972 Z-ring-associated pro 32.8 58 0.0013 23.6 3.1 36 48-83 8-43 (109)
143 PHA02592 52 DNA topisomerase I 32.3 68 0.0015 28.1 4.0 45 42-87 390-436 (439)
144 PF04521 Viral_P18: ssRNA posi 32.1 76 0.0016 23.8 3.7 34 44-77 65-101 (120)
145 KOG4571 Activating transcripti 32.0 76 0.0016 27.0 4.1 32 56-87 256-287 (294)
146 PF06295 DUF1043: Protein of u 31.8 2E+02 0.0042 20.7 5.7 15 58-72 28-42 (128)
147 PF00957 Synaptobrevin: Synapt 31.6 1.2E+02 0.0025 19.9 4.2 35 52-86 28-62 (89)
148 PRK15396 murein lipoprotein; P 31.5 1.2E+02 0.0025 20.9 4.3 48 36-85 14-62 (78)
149 PRK11239 hypothetical protein; 30.8 85 0.0018 25.6 4.0 32 54-85 182-213 (215)
150 PF13815 Dzip-like_N: Iguana/D 30.8 1E+02 0.0022 21.7 4.0 34 52-85 84-117 (118)
151 PRK09256 hypothetical protein; 30.7 25 0.00054 26.1 0.9 15 7-21 20-34 (138)
152 PRK00846 hypothetical protein; 30.6 1.4E+02 0.0029 20.6 4.5 39 46-84 4-42 (77)
153 PF01920 Prefoldin_2: Prefoldi 30.2 1.3E+02 0.0028 19.6 4.2 35 53-87 60-94 (106)
154 PF15294 Leu_zip: Leucine zipp 30.1 81 0.0018 26.4 3.9 16 54-69 131-146 (278)
155 PF07407 Seadorna_VP6: Seadorn 29.8 67 0.0015 28.4 3.5 26 62-87 32-57 (420)
156 PF14916 CCDC92: Coiled-coil d 29.8 33 0.00071 22.7 1.3 21 55-75 21-41 (60)
157 PF11221 Med21: Subunit 21 of 29.7 1.1E+02 0.0025 22.2 4.3 31 51-81 100-130 (144)
158 PRK10884 SH3 domain-containing 29.7 74 0.0016 25.0 3.5 33 55-87 125-157 (206)
159 PRK14127 cell division protein 29.6 1.1E+02 0.0024 22.1 4.1 30 55-84 44-73 (109)
160 PF04508 Pox_A_type_inc: Viral 29.4 56 0.0012 18.1 2.0 16 70-85 2-17 (23)
161 PF09304 Cortex-I_coil: Cortex 29.4 1.2E+02 0.0027 22.2 4.4 26 59-84 41-66 (107)
162 COG1792 MreC Cell shape-determ 29.4 50 0.0011 26.8 2.6 24 56-79 84-107 (284)
163 KOG2483 Upstream transcription 29.2 99 0.0021 25.1 4.2 27 49-75 113-139 (232)
164 TIGR01807 CM_P2 chorismate mut 29.0 1.6E+02 0.0035 18.9 5.7 50 55-106 6-73 (76)
165 PHA02047 phage lambda Rz1-like 28.9 2.2E+02 0.0048 20.8 5.5 45 43-87 21-77 (101)
166 TIGR03689 pup_AAA proteasome A 28.8 1.1E+02 0.0025 27.1 4.8 43 53-95 6-48 (512)
167 TIGR03495 phage_LysB phage lys 28.4 2.5E+02 0.0054 21.0 5.9 48 37-88 5-52 (135)
168 PF12834 Phage_int_SAM_2: Phag 28.1 36 0.00078 23.2 1.3 51 32-83 30-80 (91)
169 PF06156 DUF972: Protein of un 28.1 1.2E+02 0.0027 21.6 4.1 36 55-90 22-57 (107)
170 PF14197 Cep57_CLD_2: Centroso 27.8 61 0.0013 21.5 2.3 19 56-74 48-66 (69)
171 PF11336 DUF3138: Protein of u 27.7 82 0.0018 28.7 3.7 25 63-87 26-50 (514)
172 PRK11644 sensory histidine kin 27.6 2.3E+02 0.0049 24.2 6.2 30 47-76 267-296 (495)
173 TIGR00293 prefoldin, archaeal 27.5 1.4E+02 0.0031 20.5 4.2 31 55-85 93-123 (126)
174 PF02996 Prefoldin: Prefoldin 27.3 1.1E+02 0.0024 20.6 3.6 32 54-85 83-114 (120)
175 PF07334 IFP_35_N: Interferon- 27.3 1E+02 0.0022 21.3 3.4 20 66-85 4-23 (76)
176 COG3167 PilO Tfp pilus assembl 27.3 1.9E+02 0.0041 23.7 5.4 37 33-69 25-63 (211)
177 PF08172 CASP_C: CASP C termin 27.0 1.1E+02 0.0023 24.8 4.0 31 54-84 92-122 (248)
178 PF10482 CtIP_N: Tumour-suppre 26.9 1E+02 0.0023 23.2 3.6 40 47-87 28-67 (120)
179 PF09755 DUF2046: Uncharacteri 26.5 2E+02 0.0043 24.5 5.7 30 54-83 26-55 (310)
180 PF12781 AAA_9: ATP-binding dy 26.2 74 0.0016 24.9 2.9 37 54-90 165-201 (228)
181 PF06120 Phage_HK97_TLTM: Tail 26.1 69 0.0015 26.9 2.9 25 52-76 85-109 (301)
182 PRK04406 hypothetical protein; 26.0 2.1E+02 0.0045 19.2 4.9 44 44-87 14-57 (75)
183 PF10593 Z1: Z1 domain; Inter 26.0 1.3E+02 0.0029 23.7 4.3 72 32-107 5-77 (239)
184 TIGR02168 SMC_prok_B chromosom 25.9 1.3E+02 0.0028 27.0 4.6 47 56-106 1001-1050(1179)
185 TIGR01799 CM_T chorismate muta 25.4 2E+02 0.0044 18.8 5.7 31 54-84 5-35 (83)
186 COG5374 Uncharacterized conser 25.4 1.6E+02 0.0035 23.7 4.7 44 36-79 103-153 (192)
187 TIGR02894 DNA_bind_RsfA transc 25.3 1.4E+02 0.003 23.3 4.2 30 56-85 105-134 (161)
188 TIGR01791 CM_archaeal chorisma 24.9 2E+02 0.0044 18.6 5.0 31 54-84 5-35 (83)
189 COG2433 Uncharacterized conser 24.9 1.1E+02 0.0025 28.6 4.2 30 56-85 430-459 (652)
190 COG1382 GimC Prefoldin, chaper 24.7 2E+02 0.0044 21.3 4.8 33 55-87 77-109 (119)
191 PRK09737 EcoKI restriction-mod 24.4 1.5E+02 0.0032 23.8 4.4 40 50-89 371-414 (461)
192 TIGR01242 26Sp45 26S proteasom 24.1 1.8E+02 0.0038 23.6 4.8 35 55-89 6-40 (364)
193 COG1322 Predicted nuclease of 24.0 2.7E+02 0.0058 24.6 6.1 51 36-86 333-383 (448)
194 cd04769 HTH_MerR2 Helix-Turn-H 23.9 1.1E+02 0.0023 21.1 3.1 16 60-75 84-99 (116)
195 PF07061 Swi5: Swi5; InterPro 23.4 1.8E+02 0.004 19.8 4.1 29 57-85 2-30 (83)
196 PF11559 ADIP: Afadin- and alp 23.4 2E+02 0.0043 20.5 4.5 29 55-83 73-101 (151)
197 COG3166 PilN Tfp pilus assembl 23.4 3.1E+02 0.0067 21.7 5.9 26 57-82 50-75 (206)
198 PF15397 DUF4618: Domain of un 23.3 1.7E+02 0.0037 24.2 4.6 45 43-87 35-92 (258)
199 PRK14161 heat shock protein Gr 23.3 1.5E+02 0.0032 22.9 4.0 28 60-87 17-44 (178)
200 KOG3856 Uncharacterized conser 22.9 1.8E+02 0.0038 22.4 4.3 34 54-87 9-42 (135)
201 smart00434 TOP4c DNA Topoisome 22.8 91 0.002 27.0 3.1 38 41-79 402-439 (445)
202 PF05643 DUF799: Putative bact 22.8 69 0.0015 25.9 2.2 27 82-108 77-107 (215)
203 PTZ00454 26S protease regulato 22.7 1.8E+02 0.004 24.6 4.8 38 55-92 29-66 (398)
204 PF02403 Seryl_tRNA_N: Seryl-t 22.7 2.3E+02 0.0049 19.0 4.5 31 57-87 69-99 (108)
205 COG4345 Uncharacterized protei 22.6 1.6E+02 0.0034 23.6 4.1 33 58-90 121-153 (181)
206 PF07047 OPA3: Optic atrophy 3 22.3 65 0.0014 23.4 1.8 24 64-87 107-130 (134)
207 PF14362 DUF4407: Domain of un 22.2 2.3E+02 0.005 22.3 5.1 42 54-95 134-176 (301)
208 cd07596 BAR_SNX The Bin/Amphip 22.0 2.2E+02 0.0048 20.3 4.5 36 53-88 143-178 (218)
209 PF05615 THOC7: Tho complex su 21.9 2.3E+02 0.0049 20.1 4.5 57 31-87 48-106 (139)
210 PF10845 DUF2576: Protein of u 21.9 1.2E+02 0.0025 19.6 2.7 20 62-81 11-30 (48)
211 PF06637 PV-1: PV-1 protein (P 21.8 1.4E+02 0.003 26.8 4.0 29 59-87 346-374 (442)
212 COG4026 Uncharacterized protei 21.7 1.6E+02 0.0035 24.9 4.2 30 57-86 144-173 (290)
213 PF12729 4HB_MCP_1: Four helix 21.6 2.5E+02 0.0054 18.5 7.1 52 38-91 20-71 (181)
214 COG3264 Small-conductance mech 21.5 1E+02 0.0022 29.6 3.4 36 52-87 150-185 (835)
215 PF10186 Atg14: UV radiation r 21.4 2E+02 0.0043 21.8 4.3 35 53-87 61-95 (302)
216 PF05278 PEARLI-4: Arabidopsis 21.4 1.7E+02 0.0037 24.5 4.3 32 55-86 207-238 (269)
217 PF08614 ATG16: Autophagy prot 21.4 1.8E+02 0.0039 21.8 4.1 29 51-79 112-140 (194)
218 PRK13169 DNA replication intia 21.2 2.1E+02 0.0045 20.7 4.2 35 54-88 21-55 (110)
219 PF13935 Ead_Ea22: Ead/Ea22-li 21.0 1.9E+02 0.0041 21.0 4.0 31 56-86 75-107 (139)
220 PF09726 Macoilin: Transmembra 20.9 1.8E+02 0.0038 27.0 4.6 51 53-104 543-599 (697)
221 PF02096 60KD_IMP: 60Kd inner 20.9 3.5E+02 0.0075 19.9 6.3 51 41-91 16-66 (198)
222 cd01109 HTH_YyaN Helix-Turn-He 20.9 1.3E+02 0.0029 20.5 3.0 26 57-82 81-106 (113)
223 TIGR00219 mreC rod shape-deter 20.8 1.5E+02 0.0032 24.0 3.8 42 63-106 67-108 (283)
224 PF11336 DUF3138: Protein of u 20.7 1.6E+02 0.0036 26.8 4.3 30 51-80 21-50 (514)
225 smart00143 PI3K_p85B PI3-kinas 20.7 63 0.0014 22.2 1.4 18 75-92 9-26 (78)
226 PF07544 Med9: RNA polymerase 20.7 1.2E+02 0.0027 20.3 2.8 17 53-69 57-73 (83)
227 TIGR01805 CM_mono_grmpos monof 20.6 2.6E+02 0.0056 18.2 5.8 31 54-84 5-35 (81)
228 PRK00295 hypothetical protein; 20.5 2.6E+02 0.0056 18.2 4.9 42 46-87 10-51 (68)
229 PF10066 DUF2304: Uncharacteri 20.5 1.7E+02 0.0037 20.3 3.6 28 45-72 83-110 (115)
230 PRK11530 hypothetical protein; 20.3 3.6E+02 0.0079 21.6 5.7 49 34-84 5-53 (183)
231 COG4467 Regulator of replicati 20.2 1.8E+02 0.004 21.7 3.8 33 55-87 22-54 (114)
232 PF07888 CALCOCO1: Calcium bin 20.2 1.8E+02 0.004 26.5 4.5 33 55-87 150-182 (546)
233 PF06374 NDUF_C2: NADH-ubiquin 20.0 1.3E+02 0.0028 22.2 3.0 27 22-48 39-70 (117)
234 PF10779 XhlA: Haemolysin XhlA 20.0 2.5E+02 0.0055 18.0 4.1 29 55-83 20-48 (71)
No 1
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=95.35 E-value=0.088 Score=34.26 Aligned_cols=57 Identities=11% Similarity=0.233 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhh
Q 033901 33 SFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEA 89 (109)
Q Consensus 33 ~fiq~~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA 89 (109)
+.+.++++..++++++=-..|++.+.++..+..+++++.+.+...-.+++.+.-...
T Consensus 2 ~~l~~~l~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 2 KKLYVLLLLAILVSAISVVSAQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456677777777777767777777777777777777777777776666666655443
No 2
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=94.97 E-value=0.098 Score=36.97 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=31.3
Q ss_pred hccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033901 49 RSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHS 84 (109)
Q Consensus 49 RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~ 84 (109)
+=..++.++++++.+.+.|+++|+.|...+..||+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 445678889999999999999999999999999873
No 3
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=92.47 E-value=0.28 Score=35.53 Aligned_cols=54 Identities=22% Similarity=0.355 Sum_probs=36.9
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHhhcc
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLEPTGLFASRLRHLFGE 107 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~dss~v~aSRLR~Ifge 107 (109)
|..|..|.+|++.|+-||+.|+.++....+.=-........+..---|.+||-|
T Consensus 28 K~~~~el~EEN~~L~iEN~~Lr~~l~~~~~~~~~~~~~~~~~~g~~NL~~LY~E 81 (110)
T PRK13169 28 KKQLAELLEENTALRLENDKLRERLEELEAEEPAKEKKKKEGEGKDNLARLYQE 81 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHc
Confidence 677889999999999999999999987744311111111113455678888865
No 4
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=92.00 E-value=0.29 Score=30.62 Aligned_cols=31 Identities=32% Similarity=0.398 Sum_probs=25.1
Q ss_pred HHHHhhccchhhhhhhhHHhhHHHHHHhHHH
Q 033901 44 LLLSVRSLGQKYRIHDLQEDTSALKEEQESL 74 (109)
Q Consensus 44 ~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l 74 (109)
++...+-..++.++..++.+.+.+++|.+.+
T Consensus 37 l~~~~~~~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 37 LLSLPSRLRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555889999999999999999998875
No 5
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=91.88 E-value=0.39 Score=34.39 Aligned_cols=54 Identities=22% Similarity=0.369 Sum_probs=37.3
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHH--Hh-hhhccCCCcchHHHHHHhhcc
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHS--LL-HEASLEPTGLFASRLRHLFGE 107 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~--L~-~EA~~dss~v~aSRLR~Ifge 107 (109)
|..|..|.+|++.|+-||+.|+.++....+. -. ........+-.-..|.+||-|
T Consensus 28 K~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~~~~~~~~~~~~~~~~~g~~NL~~LY~E 84 (107)
T PF06156_consen 28 KKQLQELLEENARLRIENEHLRERLEELEQEEEEKEEKKTKKKLGEGRDNLARLYQE 84 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHhc
Confidence 5678889999999999999999998887661 00 112223344556678888865
No 6
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=91.41 E-value=0.5 Score=29.87 Aligned_cols=35 Identities=26% Similarity=0.471 Sum_probs=29.9
Q ss_pred hhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 53 QKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
.+.+|++|+.....|..+|+.|...+..+++++-.
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999998887643
No 7
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=90.27 E-value=1 Score=29.19 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhh--ccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033901 35 IQLFAMTGILLLSVR--SLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 35 iq~~Lmg~~~~Ls~R--Sl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
+-++++.+|.+...+ .-..+.++.+++.+.+.++.+|+.|......|.+
T Consensus 9 ~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 9 LLAILVSAISVVSAQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344555555555543 3345567888888888888888888877776654
No 8
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=89.70 E-value=1.4 Score=27.75 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=24.4
Q ss_pred chhhhhhhhHHhhHHHHHHhHHHHHHHHHH
Q 033901 52 GQKYRIHDLQEDTSALKEEQESLTNRMNNI 81 (109)
Q Consensus 52 ~Qq~~I~~L~~dkasL~~en~~l~~rMw~~ 81 (109)
..+.+|.+|+.+.+.|+++|+.|...+..+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345568888888888888888888888888
No 9
>smart00338 BRLZ basic region leucin zipper.
Probab=88.47 E-value=1.1 Score=28.23 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=29.5
Q ss_pred hhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 53 QKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
.+..|++|+.+...|..+|..|...+..++.++..
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999888887654
No 10
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=88.08 E-value=2.1 Score=28.68 Aligned_cols=48 Identities=17% Similarity=0.359 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHhhccchh-------hhhhhhHHhhHHHHHHhHHHHHHHHH
Q 033901 33 SFIQLFAMTGILLLSVRSLGQK-------YRIHDLQEDTSALKEEQESLTNRMNN 80 (109)
Q Consensus 33 ~fiq~~Lmg~~~~Ls~RSl~Qq-------~~I~~L~~dkasL~~en~~l~~rMw~ 80 (109)
+.+.++|+..+++.++=...+. ++++.++.+...|..||+.|.--.-.
T Consensus 13 ~~l~i~l~~~v~~~a~~~v~~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~ 67 (97)
T PF04999_consen 13 KKLIILLVIVVLISALGVVYSRHQSRQLFYELQQLEKEIDQLQEENERLRLEIAT 67 (97)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445444444444333444 44555555555555555555443333
No 11
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=87.76 E-value=1 Score=28.30 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=39.0
Q ss_pred HHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhh
Q 033901 42 GILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHE 88 (109)
Q Consensus 42 ~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~E 88 (109)
-++.+++-...+..++..+..+...|+++.+.++....++++++-..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 4 FLVIFLVFGISGYSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred ehhhHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666677888899999999999999999999999999887654
No 12
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=87.27 E-value=3.6 Score=28.88 Aligned_cols=38 Identities=21% Similarity=0.141 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhhhhHHhhHHHHHHh
Q 033901 34 FIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQ 71 (109)
Q Consensus 34 fiq~~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en 71 (109)
|+.+.|..=|+.|+.=++.|.++|+.|.+++..+.+..
T Consensus 4 ~~~~~l~~lvl~L~~~l~~qs~~i~~L~a~n~~q~~tI 41 (110)
T PF10828_consen 4 YIYIALAVLVLGLGGWLWYQSQRIDRLRAENKAQAQTI 41 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333333355566667789999999999987644443
No 13
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=87.19 E-value=2.7 Score=28.12 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.7
Q ss_pred cchhhhhhhhHHhhHHHHHHhHHHHH
Q 033901 51 LGQKYRIHDLQEDTSALKEEQESLTN 76 (109)
Q Consensus 51 l~Qq~~I~~L~~dkasL~~en~~l~~ 76 (109)
...+.+++.|++|...|+-|...++.
T Consensus 45 ~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 45 QQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 46778899999999999999998875
No 14
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.87 E-value=1.6 Score=27.05 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=26.5
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
..-+.|.+|.++|.+||+.|+.-+-.++..|.
T Consensus 12 ~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 12 ASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44588999999999999999998888877653
No 15
>PHA03162 hypothetical protein; Provisional
Probab=84.96 E-value=1 Score=34.22 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=26.9
Q ss_pred hccchhhhhhhhHHhhHHHHHHhHHHHHHHH
Q 033901 49 RSLGQKYRIHDLQEDTSALKEEQESLTNRMN 79 (109)
Q Consensus 49 RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw 79 (109)
+--+||-.+|+|+++..-|+-||+.|++.|.
T Consensus 7 ~~pk~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 7 KCPKAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred CCCccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999987764
No 16
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=84.37 E-value=1 Score=33.50 Aligned_cols=52 Identities=29% Similarity=0.371 Sum_probs=35.6
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhccCC------CcchHHHHHHhhcc
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLEP------TGLFASRLRHLFGE 107 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~ds------s~v~aSRLR~Ifge 107 (109)
|..+..|-+|+..|+-||+.|++|+-+ ..+-+.+..-. .+-.--.|..||+|
T Consensus 28 K~~l~~lvEEN~~L~lENe~LR~RL~~--~~~e~~~~~k~~~~~~~~~~~~dnL~~lY~E 85 (114)
T COG4467 28 KQHLGSLVEENTALRLENEKLRERLGE--PTLEKTAVKKEKPAVKKKGEGYDNLARLYQE 85 (114)
T ss_pred HHHHHHHHHhhHHHHhhHHHHHHHhCC--ccccchhhhcccccccccCCCchhHHHHHhc
Confidence 556777778888888888888888877 44444333332 44556788889986
No 17
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.57 E-value=1.6 Score=35.42 Aligned_cols=55 Identities=29% Similarity=0.371 Sum_probs=47.5
Q ss_pred hhhhhhhhHHhhHHHH---HHhHHHHHHHHHHHHHHhhhhccCCCcchHHH-HHHhhcc
Q 033901 53 QKYRIHDLQEDTSALK---EEQESLTNRMNNIKHSLLHEASLEPTGLFASR-LRHLFGE 107 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~---~en~~l~~rMw~~k~~L~~EA~~dss~v~aSR-LR~Ifge 107 (109)
|.++|+.|+++...|. .+|+.+-.++-.|+.+|+...+.+.-....-+ +++.||=
T Consensus 50 ~R~~~~~Le~~l~~L~~~A~~N~~lf~r~~~lq~~Ll~a~sl~d~l~~v~~~~a~~f~l 108 (218)
T COG3159 50 LRNRIRELEEELAALMENARANERLFYRLHALQLDLLDARSLDDLLRRVDRSWARDFGL 108 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhCC
Confidence 6788999999988776 58999999999999999999998887777777 8888873
No 18
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=83.57 E-value=3 Score=25.74 Aligned_cols=32 Identities=25% Similarity=0.500 Sum_probs=26.3
Q ss_pred hhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033901 53 QKYRIHDLQEDTSALKEEQESLTNRMNNIKHS 84 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~ 84 (109)
+|-.+++|+.+...|..+|..|...+..++++
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45678889999999999999998888877754
No 19
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=82.76 E-value=4 Score=29.05 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=27.8
Q ss_pred HHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033901 40 MTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHS 84 (109)
Q Consensus 40 mg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~ 84 (109)
.|......+..+.+ +|.+++++.+.|.++|..|...+.+++++
T Consensus 44 ~g~~~~~~~~~l~~--qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 44 FGKNGAADVLQLQR--QIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33344444444443 34477777777888888888888888776
No 20
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=80.12 E-value=4.4 Score=27.26 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=18.3
Q ss_pred hhhhhhhHHh-------hHHHHHHhHHHHHHHHHHHHHH
Q 033901 54 KYRIHDLQED-------TSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 54 q~~I~~L~~d-------kasL~~en~~l~~rMw~~k~~L 85 (109)
|.+|+.|+++ +..|+.+|+.|+.--..|+.-|
T Consensus 24 q~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 24 QMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556555 5555556666666666665544
No 21
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=79.74 E-value=2.6 Score=36.87 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=25.1
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 57 IHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
.-+|+.|+++|++||++|+..+-.++.+.++
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~ 64 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLENEMLR 64 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4578999999999999999888877666653
No 22
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=79.12 E-value=8.4 Score=32.73 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=25.3
Q ss_pred hhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhh
Q 033901 53 QKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHE 88 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~E 88 (109)
+-...-+|.+|++.|++||..|...+.. .+++.+|
T Consensus 55 ~~~~y~~L~~EN~~Lk~Ena~L~~~l~~-~e~l~~E 89 (337)
T PRK14872 55 PSSHALVLETENFLLKERIALLEERLKS-YEEANQT 89 (337)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3355578889999999999988887776 3444444
No 23
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=78.38 E-value=12 Score=24.77 Aligned_cols=52 Identities=17% Similarity=0.276 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhccch-----hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 36 QLFAMTGILLLSVRSLGQ-----KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 36 q~~Lmg~~~~Ls~RSl~Q-----q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
-++.+..|+.+.++++++ ...++.++++.+.+.+|-..+.+....+.++.-.
T Consensus 9 af~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~ 65 (90)
T PF06103_consen 9 AFAVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNE 65 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777888754 5667788888888888888888877777765433
No 24
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=78.07 E-value=3.2 Score=36.93 Aligned_cols=49 Identities=24% Similarity=0.518 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHh--hccc-----hhhhhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033901 34 FIQLFAMTGILLLSV--RSLG-----QKYRIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 34 fiq~~Lmg~~~~Ls~--RSl~-----Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
-|.++|+++.+.+++ .+.. || +|++|+.+.++|+++++.|.+++....+
T Consensus 4 ~~~l~l~aall~~s~~~~a~~~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 4 LISLSLAAALLFLSLPAAAMADDIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred hHHHHHHHHHHHhccchhhhhhhhHHHH-HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 355566665444443 2222 34 8999999999999998888888766554
No 25
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=77.29 E-value=1.5 Score=38.94 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=12.6
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHH
Q 033901 63 DTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 63 dkasL~~en~~l~~rMw~~k~~L 85 (109)
+.+.|++|.++|++.+-++++.+
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred HHHHHHHHHHHHHHhhccccccc
Confidence 55555555555555555554443
No 26
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=76.85 E-value=4.1 Score=32.81 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=33.1
Q ss_pred cchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhh
Q 033901 51 LGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHE 88 (109)
Q Consensus 51 l~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~E 88 (109)
.+-+++|+.|+.|++.|+.+.+.|++-.-.+++-++.-
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66788999999999999999999999998888877763
No 27
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=76.21 E-value=8.4 Score=28.00 Aligned_cols=64 Identities=22% Similarity=0.228 Sum_probs=45.6
Q ss_pred CchhhHHHHHhhccchHHHHHHHHHHHHHHhhcc-chhhhhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033901 18 KRSLGFIANAKKHKHSFIQLFAMTGILLLSVRSL-GQKYRIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 18 ~r~~g~~a~A~k~k~~fiq~~Lmg~~~~Ls~RSl-~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
.+.+-+.++..- |.||-.++.|-++.=.+||. ..+.+-++++++.+.|+.+.+.|...+.+.++
T Consensus 69 ~~Aie~Gaell~--E~fiF~Va~~li~~E~~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 69 EKAIELGAELLG--EAFIFSVAAGLIIYEYWRSARKEAKKEEELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566777773 78887777777777788988 44555677778888888888877777766543
No 28
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=75.72 E-value=8.1 Score=24.28 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=28.3
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
+.+++.|+.++..|+.++..|...+..++.+.
T Consensus 32 e~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 32 EEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56788999999999999999999999888765
No 29
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=75.32 E-value=4.1 Score=30.25 Aligned_cols=25 Identities=16% Similarity=0.426 Sum_probs=21.8
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHH
Q 033901 56 RIHDLQEDTSALKEEQESLTNRMNN 80 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~ 80 (109)
-+|+|+++..-|+-||+.|++.|..
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4799999999999999999877653
No 30
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=74.59 E-value=12 Score=30.66 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=29.8
Q ss_pred chhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033901 52 GQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 52 ~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
-|+.-++.|+.+..+|++||+.|.......+.++-
T Consensus 29 l~~~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~ 63 (308)
T PF11382_consen 29 LQPNLIDSLEDQFDSLREENDELRAELDALQAQLN 63 (308)
T ss_pred hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667889999999999999999999888887763
No 31
>smart00338 BRLZ basic region leucin zipper.
Probab=74.53 E-value=7.8 Score=24.35 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=29.0
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
..++++|+.++..|+.+...|..-.-.+++.+.
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999988764
No 32
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=74.38 E-value=7.9 Score=25.42 Aligned_cols=34 Identities=21% Similarity=0.448 Sum_probs=26.2
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
+.+++.++.+...|.++.+.+..+|.+|+..|..
T Consensus 68 ~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 68 EERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888888888888888887754
No 33
>PHA03155 hypothetical protein; Provisional
Probab=72.87 E-value=4.4 Score=30.12 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=21.4
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHH
Q 033901 56 RIHDLQEDTSALKEEQESLTNRMN 79 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw 79 (109)
.+|+|+++..-|+-||+.|++.|.
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~ 32 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLL 32 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999987764
No 34
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=71.36 E-value=28 Score=24.69 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033901 34 FIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 34 fiq~~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
.+-++++.-|...+|+=-+.......++.+++.+.++++.|+.+-..++.+.
T Consensus 29 ~~l~~~l~~f~~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei 80 (117)
T COG2919 29 LVLLALLALFQYLAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEI 80 (117)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666777788888888889999999999999999999999977666554
No 35
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=68.80 E-value=18 Score=27.03 Aligned_cols=55 Identities=7% Similarity=0.177 Sum_probs=32.0
Q ss_pred cchHHHHHHHHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033901 31 KHSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 31 k~~fiq~~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
-|+++-+.+...+++++++.+.=|..+=+.+-|..+|...-.+=+....|++++.
T Consensus 36 ~EKvly~~~~va~L~vai~ii~~q~~~yqvq~ei~~Le~kIs~q~~e~~dlkqeV 90 (120)
T COG4839 36 VEKVLYTTLAVAALVVAISIISVQTKAYQVQGEITDLESKISEQKTENDDLKQEV 90 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 4777777778888888888776665544444444444444444444444444443
No 36
>PRK14127 cell division protein GpsB; Provisional
Probab=67.98 E-value=10 Score=27.45 Aligned_cols=32 Identities=13% Similarity=0.314 Sum_probs=28.4
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 56 RIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
.++.|..++..|++++..|..++..|+.++-.
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 67788899999999999999999999998875
No 37
>PRK15396 murein lipoprotein; Provisional
Probab=67.84 E-value=37 Score=23.35 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHH-HHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 33 SFIQLFAMTGIL-LLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 33 ~fiq~~Lmg~~~-~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
.++-..++.+++ +.|-=|. -+++.|..|...|..+.+.++.-..+.+.+.-.
T Consensus 5 kl~l~av~ls~~LLaGCAs~---~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~ 57 (78)
T PRK15396 5 KLVLGAVILGSTLLAGCSSN---AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQA 57 (78)
T ss_pred HHHHHHHHHHHHHHHHcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333444333 3333343 377788888888888888887777777765543
No 38
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=67.42 E-value=11 Score=27.31 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=40.5
Q ss_pred cchHHHHHHHHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 31 KHSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 31 k~~fiq~~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
|..||-==.-..-+---+++-+| .|+.++.|.+||.--|+.|.+|+-.++++|-.
T Consensus 18 KKaVieEQ~k~~~L~e~Lk~ke~--~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 18 KKAVIEEQAKNAELKEQLKEKEQ--ALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333333445555665555 58899999999999999999999999999973
No 39
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=66.18 E-value=12 Score=28.53 Aligned_cols=40 Identities=25% Similarity=0.339 Sum_probs=26.2
Q ss_pred hccchhhhhhh----hHHhhHHHHHHhHHHHHHHHHHHHHHhhh
Q 033901 49 RSLGQKYRIHD----LQEDTSALKEEQESLTNRMNNIKHSLLHE 88 (109)
Q Consensus 49 RSl~Qq~~I~~----L~~dkasL~~en~~l~~rMw~~k~~L~~E 88 (109)
+=+.|||++|. |+.|.+.|++||..|.-..-.||.-.-+.
T Consensus 71 KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 71 KRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777653 55666667777777777777777665443
No 40
>PF15058 Speriolin_N: Speriolin N terminus
Probab=64.66 E-value=13 Score=30.02 Aligned_cols=38 Identities=29% Similarity=0.396 Sum_probs=28.4
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHHHHHH-----HhhhhccCCC
Q 033901 57 IHDLQEDTSALKEEQESLTNRMNNIKHS-----LLHEASLEPT 94 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~~k~~-----L~~EA~~dss 94 (109)
.|.|-..+.-|..||++|||.+|=||+. ++.||..+..
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLirEN~eLksaL~ea~~~~~ 49 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIRENHELKSALGEACAEPS 49 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3566777788889999999999988864 3457776654
No 41
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=64.60 E-value=8.7 Score=25.69 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=17.8
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHH
Q 033901 54 KYRIHDLQEDTSALKEEQESLTN 76 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~ 76 (109)
|.+|.+|++++..|..||.-|+.
T Consensus 20 K~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 20 KEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788888888888888876654
No 42
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=64.52 E-value=9.6 Score=24.73 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=19.9
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHH
Q 033901 56 RIHDLQEDTSALKEEQESLTNRMN 79 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw 79 (109)
+..+|..|+++|+++|..|+.-|.
T Consensus 34 ~R~~l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 34 DRAALIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999987663
No 43
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=64.26 E-value=23 Score=27.68 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=18.0
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHH
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNI 81 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~ 81 (109)
-..+.+|.+|+..|++|++.|+...-..
T Consensus 68 ~~~~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 68 LASLFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777766655533
No 44
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.69 E-value=18 Score=25.43 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=20.0
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 57 IHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
..+++..++.|+.||+.++.-=..|++.|.+
T Consensus 41 ~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 41 VQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556677777777777778775544
No 45
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=62.71 E-value=29 Score=26.98 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=31.2
Q ss_pred cchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhccCCCcchHHHH
Q 033901 51 LGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLEPTGLFASRL 101 (109)
Q Consensus 51 l~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~dss~v~aSRL 101 (109)
..|+.+|.+|+.+.+++.+....|.--|...-++|-.-=..|-|-..--|.
T Consensus 80 ~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~ 130 (251)
T PF11932_consen 80 ASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQ 130 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHH
Confidence 356666677777777777777777777777777776644444444433333
No 46
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=61.45 E-value=25 Score=25.01 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHh
Q 033901 39 AMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLEPTGLFASRLRHL 104 (109)
Q Consensus 39 Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~dss~v~aSRLR~I 104 (109)
++.+..-|+=+.+..+-+++.+..+...+..+-+.+........+++-.....-++.....+|+.-
T Consensus 39 l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~ 104 (150)
T PF07200_consen 39 LLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAA 104 (150)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 566777788888888899999999999999999999999888888877776666777777777753
No 47
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.92 E-value=19 Score=29.90 Aligned_cols=51 Identities=16% Similarity=0.322 Sum_probs=26.3
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh-hhcc--------CCCcchHHHHHHhh
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH-EASL--------EPTGLFASRLRHLF 105 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~-EA~~--------dss~v~aSRLR~If 105 (109)
.+|++|.++..++..+.+++..+|...++++=. +... .-.-++..|+|++|
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555544432 1111 11226777888877
No 48
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=60.28 E-value=17 Score=29.34 Aligned_cols=31 Identities=13% Similarity=0.283 Sum_probs=18.0
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033901 56 RIHDLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
.+.+|++|++.|++|+..|...+....++|.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~ 97 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLK 97 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777666555554333333
No 49
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=60.22 E-value=22 Score=24.93 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=20.5
Q ss_pred hhhhhhhHHhhHHHHH--------------HhHHHHHHHHHHHHHHh
Q 033901 54 KYRIHDLQEDTSALKE--------------EQESLTNRMNNIKHSLL 86 (109)
Q Consensus 54 q~~I~~L~~dkasL~~--------------en~~l~~rMw~~k~~L~ 86 (109)
|-+|+.|.+++..|.+ +|+.|+.--..|++.|.
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777776555555 66666666666666554
No 50
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=60.07 E-value=19 Score=21.51 Aligned_cols=26 Identities=15% Similarity=0.497 Sum_probs=20.7
Q ss_pred hhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033901 58 HDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 58 ~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
+-|-.+++.|++.++.|+.++-.++.
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34778999999999999999877664
No 51
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=59.97 E-value=12 Score=33.28 Aligned_cols=31 Identities=32% Similarity=0.493 Sum_probs=24.5
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHS 84 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~ 84 (109)
..+++.|+.|++.|++||+.|+.|-.++-++
T Consensus 72 r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~ 102 (472)
T TIGR03752 72 RKRLAKLISENEALKAENERLQKREQSIDQQ 102 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 4678899999999999999998865555443
No 52
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=59.52 E-value=10 Score=35.09 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=16.4
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHH
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRM 78 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rM 78 (109)
+-||.+|..|.++|++||..|+.++
T Consensus 308 e~rLq~ll~Ene~Lk~ENatLk~qL 332 (655)
T KOG4343|consen 308 EARLQALLSENEQLKKENATLKRQL 332 (655)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3466777777777777777665544
No 53
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=59.41 E-value=24 Score=24.15 Aligned_cols=48 Identities=13% Similarity=0.290 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhccc-----hhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 38 FAMTGILLLSVRSLG-----QKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 38 ~Lmg~~~~Ls~RSl~-----Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
.++|++++- ++.+ =..+++.++.+...|.++-+.+.+.|.+||..|..
T Consensus 50 ~~VG~vfv~--~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 50 KLVGNVLVK--QEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHhhhHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666554 3332 24567778888888888888899999999988764
No 54
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=59.39 E-value=45 Score=25.08 Aligned_cols=30 Identities=30% Similarity=0.536 Sum_probs=23.3
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033901 57 IHDLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
|.++.++.+.++++++.+.+++..+++.+.
T Consensus 48 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 77 (151)
T PF14584_consen 48 LNELFDQIDELKEELEELEKRIEELEEKLR 77 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778888888888888888888764
No 55
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=59.33 E-value=32 Score=22.61 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=29.1
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 56 RIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
.|+.+.+...+|+.+|+.|..+|....++|-.
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~ 46 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKE 46 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999955
No 56
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=58.95 E-value=12 Score=31.68 Aligned_cols=43 Identities=28% Similarity=0.394 Sum_probs=35.1
Q ss_pred HHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHH----HHHHH
Q 033901 42 GILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNN----IKHSL 85 (109)
Q Consensus 42 ~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~----~k~~L 85 (109)
-++-|-++++-. -+++.|++|.+.|++|.+.+....++ |+++|
T Consensus 379 yLL~m~L~~LT~-~e~~kL~~e~~~l~~ei~~l~~~~~~~~~l~~~dL 425 (426)
T PF00521_consen 379 YLLSMPLRRLTK-EEIEKLQKEIKELEKEIEELEKILPKIKDLWKKDL 425 (426)
T ss_dssp HHHTSBGGGGSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHhchHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777765 78899999999999999999999988 66554
No 57
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=58.22 E-value=33 Score=29.80 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=30.7
Q ss_pred hccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhh
Q 033901 49 RSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEA 89 (109)
Q Consensus 49 RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA 89 (109)
....+...+..+.+|..++++++..|...|-+||.++..|.
T Consensus 206 ~~~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~ 246 (395)
T PF10267_consen 206 VSSQQNLGLQKILEELREIKESQSRLEESIEKLKEQYQREY 246 (395)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777778888888888888888888888777654
No 58
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=57.54 E-value=22 Score=25.19 Aligned_cols=34 Identities=29% Similarity=0.523 Sum_probs=26.7
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHH---HHHHHHHHhh
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNR---MNNIKHSLLH 87 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~r---Mw~~k~~L~~ 87 (109)
+.+|+.|+.++.+|.+|++.|+.. ++.=|++|+.
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ 84 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTEREEKQELLK 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999875 4455555553
No 59
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=56.93 E-value=25 Score=23.54 Aligned_cols=50 Identities=24% Similarity=0.316 Sum_probs=33.0
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHH---Hhh--hhccCCCcchHHHHHHh
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHS---LLH--EASLEPTGLFASRLRHL 104 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~---L~~--EA~~dss~v~aSRLR~I 104 (109)
.+|+.|-..-..|+.||..|....-.|+.+ |.. |++..-=-+.++||+.+
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 357777778888888888888888888765 332 22222222566777765
No 60
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=56.85 E-value=17 Score=28.91 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=26.4
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
+.+|++|+.|.+.||=..+.+...+..+++
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 789999999999999999988888887774
No 61
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.75 E-value=19 Score=25.30 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=10.2
Q ss_pred hhhhhHHhhHHHHHHhHHHH
Q 033901 56 RIHDLQEDTSALKEEQESLT 75 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~ 75 (109)
+|+.|.+.+.+|..|..+..
T Consensus 26 EieELKEknn~l~~e~q~~q 45 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQ 45 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHH
Confidence 45555555555554444333
No 62
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=56.66 E-value=31 Score=22.10 Aligned_cols=41 Identities=15% Similarity=0.270 Sum_probs=32.2
Q ss_pred ccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhccCC
Q 033901 50 SLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLEP 93 (109)
Q Consensus 50 Sl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~ds 93 (109)
|-+|+.+|+++..+.. ++...+...|++.+++|.++-.+|.
T Consensus 43 t~eQ~~~l~~~~~~~~---~~~~~~r~~~~~~r~~l~~ll~~~~ 83 (125)
T PF13801_consen 43 TPEQQAKLRALMDEFR---QEMRALRQELRAARQELRALLAAPP 83 (125)
T ss_dssp THHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred CHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7889999988877654 5777888888999999988666553
No 63
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=55.87 E-value=15 Score=30.23 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=34.0
Q ss_pred chhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhh
Q 033901 52 GQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHE 88 (109)
Q Consensus 52 ~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~E 88 (109)
.++..|+.|+++...|++|.+.|..-.||.++..|..
T Consensus 197 ~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~iF~d 233 (258)
T PF15397_consen 197 QFREEIDELEEEIPQLRAEVEQLQAQAQDPREVIFAD 233 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhhHH
Confidence 4677899999999999999999999999999998875
No 64
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=55.31 E-value=6.9 Score=30.25 Aligned_cols=24 Identities=25% Similarity=0.594 Sum_probs=9.2
Q ss_pred HhhHHHHHHhHHHHHHHHHHHHHH
Q 033901 62 EDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 62 ~dkasL~~en~~l~~rMw~~k~~L 85 (109)
+||+.|+.++.-|++-++|+|++|
T Consensus 24 dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 24 DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999
No 65
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=53.39 E-value=32 Score=23.31 Aligned_cols=34 Identities=21% Similarity=0.455 Sum_probs=26.5
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
+.+++.|+.....|.++-+.+...|..++..|-.
T Consensus 93 ~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 93 KKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888888876643
No 66
>COG3116 FtsL Cell division protein [Cell division and chromosome partitioning]
Probab=53.24 E-value=89 Score=23.00 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=55.4
Q ss_pred CCCCchhhHHHHHhhccchHHHHHHHHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 033901 15 QNPKRSLGFIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASL 91 (109)
Q Consensus 15 ~~~~r~~g~~a~A~k~k~~fiq~~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~ 91 (109)
+.+--..+|+.+=-= ..+++.+||+.++++-.+=-..=.|.-+-|-.|+..+..|.+.+-. +|+.=-++|++-
T Consensus 4 ~~r~~l~~ii~~dl~-~~~kl~l~LLi~ivlsAi~vv~~tH~tRqL~~e~~~~~~er~~L~~---EwrnLilEe~tl 76 (105)
T COG3116 4 QERYPLPGIIGDDLL-TSGKLPLLLLIAIVLSAIGVVYTTHHTRQLIAELEQLVLERDALNI---EWRNLILEENTL 76 (105)
T ss_pred CCCCchhHHHHHHHH-hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh---HHHHHHHHHHhh
Confidence 333334455554432 3678899999999998888889999999999999999999999875 566666666654
No 67
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=53.10 E-value=4.5 Score=29.80 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhccchhhhhhhhHHhhHHHHHH
Q 033901 33 SFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEE 70 (109)
Q Consensus 33 ~fiq~~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~e 70 (109)
+++-.+|++|-++...==.+||.+|+.|+.....|++|
T Consensus 38 tvLa~LLiAGQa~TaYfv~~Qk~qI~~Lq~~s~~l~~e 75 (114)
T PF09307_consen 38 TVLACLLIAGQAVTAYFVFQQKGQIKKLQKTSQNLQLE 75 (114)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 34566788888888888889999999999999998877
No 68
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=51.93 E-value=32 Score=29.96 Aligned_cols=46 Identities=26% Similarity=0.292 Sum_probs=37.3
Q ss_pred HHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHH-------HHHHHHHh
Q 033901 40 MTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRM-------NNIKHSLL 86 (109)
Q Consensus 40 mg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rM-------w~~k~~L~ 86 (109)
.-.++-|-++++- +-+++.|++|.+.|.+|.+.+.+.. .-|+++|.
T Consensus 391 a~~IL~m~L~~LT-~~e~~kL~~E~~~l~~ei~~l~~~l~~~~~~~~~i~~eL~ 443 (445)
T cd00187 391 ADAILDMRLRRLT-KLEREKLLKELKELEAEIEDLEKILASEERPKDLWKEELD 443 (445)
T ss_pred HHHHHHhHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4566788888987 6788999999999999999998877 45777764
No 69
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=51.08 E-value=33 Score=31.56 Aligned_cols=49 Identities=27% Similarity=0.333 Sum_probs=42.8
Q ss_pred hhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhccC--CCcchHHHHHHhhc
Q 033901 58 HDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLE--PTGLFASRLRHLFG 106 (109)
Q Consensus 58 ~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~d--ss~v~aSRLR~Ifg 106 (109)
+-|+.....|+++|+.++-|..-++..+-+||+.. -++.+..||..+|+
T Consensus 32 e~L~~~l~~~q~~n~klk~r~sil~KSia~~~a~~~~~~~ni~~~L~~lF~ 82 (656)
T KOG4426|consen 32 ELLEHILVQLQKENDKLKYRLSILEKSIAEEAAKNEKFTSNIFRRLQSLFD 82 (656)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHH
Confidence 44777789999999999999999999999998876 56788899999886
No 70
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=50.87 E-value=77 Score=22.28 Aligned_cols=34 Identities=9% Similarity=0.142 Sum_probs=30.8
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhh
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHE 88 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~E 88 (109)
.++.+++.+.+.++++|+.+..+-..|++++-..
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999999999999987654
No 71
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=49.55 E-value=26 Score=31.76 Aligned_cols=35 Identities=29% Similarity=0.437 Sum_probs=30.1
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhh
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHE 88 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~E 88 (109)
|.+|..|++|+..|++||..|..-+-.+|.+|-.|
T Consensus 161 krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E 195 (546)
T KOG0977|consen 161 KRRIKALEDELKRLKAENSRLREELARARKQLDDE 195 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 57899999999999999999999998888766544
No 72
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=49.30 E-value=32 Score=23.14 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=24.4
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033901 57 IHDLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
+.+.+...+.|++||=+|+-|+--+.+.|-
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 456777888888888888888888888876
No 73
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=48.34 E-value=39 Score=22.13 Aligned_cols=30 Identities=13% Similarity=0.432 Sum_probs=21.8
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033901 56 RIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
++..++-....+++||+.+++.+-.+++-.
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666778888888888888887754
No 74
>PRK11637 AmiB activator; Provisional
Probab=48.27 E-value=73 Score=26.59 Aligned_cols=34 Identities=12% Similarity=0.238 Sum_probs=16.7
Q ss_pred chhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033901 52 GQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 52 ~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
..+.+++.++.+...+.++.+.+.+.+.+..++|
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l 77 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQL 77 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544444444444433
No 75
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=47.89 E-value=31 Score=31.34 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=29.5
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
.+|+++=++...|+++|+.+..++.+++.+|-+
T Consensus 370 ~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r 402 (557)
T PF01763_consen 370 GQINNQFDTIEDLKEENQDLEKKLRELESELSR 402 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999999877
No 76
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=47.75 E-value=46 Score=23.00 Aligned_cols=50 Identities=12% Similarity=0.250 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhc---cchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 38 FAMTGILLLSVRS---LGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 38 ~Lmg~~~~Ls~RS---l~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
-++|++++.-=+. ..=+.+|+.++.+...|.+..+.+...+.+.++.|..
T Consensus 54 k~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 54 KSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666542111 1346788888888888888888888888888887654
No 77
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=47.43 E-value=38 Score=26.50 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=31.2
Q ss_pred chhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhh
Q 033901 52 GQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHE 88 (109)
Q Consensus 52 ~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~E 88 (109)
.-+..|+.|+.+..+|+..|..|..++.++++.+-.+
T Consensus 220 ~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~ 256 (312)
T PF00038_consen 220 ELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEE 256 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHH
Confidence 4567889999999999999999999999988776543
No 78
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=46.48 E-value=81 Score=25.58 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=54.0
Q ss_pred hhHHHHHhhccchHH----HHHHHHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033901 21 LGFIANAKKHKHSFI----QLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 21 ~g~~a~A~k~k~~fi----q~~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
.+++..|.++ +-+| .++.+-..+..+||...|..+++.+.+.-..|...-..+..+|.++...|=
T Consensus 196 ~~l~~~A~~k-~V~l~sPstL~a~L~~v~~~w~~~~~~~na~~I~~~~~~l~~~~~~~~~~~~~l~k~l~ 264 (304)
T PF02646_consen 196 PELIEYAFKK-NVVLVSPSTLMALLRTVAYLWRQEAQNKNAEEIAELAGKLYDRFGKFVEHLEKLGKSLD 264 (304)
T ss_pred hHHHHHHHHC-CcEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777763 4444 678888899999999999999999999999999999988888888877764
No 79
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=45.89 E-value=66 Score=22.01 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=40.1
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhccCCCcchHHHHHH
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLEPTGLFASRLRH 103 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~dss~v~aSRLR~ 103 (109)
+.+++.+.|..-|.+.-+.....+.++++.+-.........+|-.|+--
T Consensus 28 ~~~~~~~~E~~rl~~Al~~~~~eL~~l~~~~~~~~~~~~a~If~ah~~~ 76 (123)
T PF05524_consen 28 RHIDDIEAEIERLEQALEKAREELEQLAERAESKLGEEEAAIFEAHLMM 76 (123)
T ss_dssp TB-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHSSCTHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 4458889999999999999999999999998887777777788777643
No 80
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=45.37 E-value=1e+02 Score=21.62 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=30.0
Q ss_pred HHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033901 45 LLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 45 ~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
-+.|++-.=+.+++.|++|+..|..|...-..-+.+-|-
T Consensus 20 y~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~v 58 (87)
T PF10883_consen 20 YLWWKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKV 58 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777999999999999988877777776553
No 81
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=44.55 E-value=46 Score=25.38 Aligned_cols=46 Identities=24% Similarity=0.432 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhccchhhhhhhhHHhhHHHHH-------HhHHHHHHHHHHHHHHhh
Q 033901 38 FAMTGILLLSVRSLGQKYRIHDLQEDTSALKE-------EQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 38 ~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~-------en~~l~~rMw~~k~~L~~ 87 (109)
|.+|.+++ +..|-.--+-|++.+..|.+ +.+++..+|-++|.-|++
T Consensus 68 ~~vGdvF~----~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LYa 120 (131)
T KOG1760|consen 68 FKVGDVFI----HVKLDKLQDQLEEKKETLEKEIEELESELESISARMDELKKVLYA 120 (131)
T ss_pred eehhhhhe----eccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55565544 44555555555555555555 455556666666666654
No 82
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=44.50 E-value=68 Score=24.03 Aligned_cols=61 Identities=16% Similarity=0.262 Sum_probs=45.6
Q ss_pred chhhHHHHHhhccchHHHHHHHHHHHHHHhh--ccchhhhhhhhHHhhHHHHHHhHHHHHHHHHH
Q 033901 19 RSLGFIANAKKHKHSFIQLFAMTGILLLSVR--SLGQKYRIHDLQEDTSALKEEQESLTNRMNNI 81 (109)
Q Consensus 19 r~~g~~a~A~k~k~~fiq~~Lmg~~~~Ls~R--Sl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~ 81 (109)
+.++-++++-= -.++-.+|+.+|.++++- -+.=|.+|.+|+...++=..||++++.-+.++
T Consensus 31 ~~~t~~EKvly--~~~~va~L~vai~ii~~q~~~yqvq~ei~~Le~kIs~q~~e~~dlkqeV~dL 93 (120)
T COG4839 31 KKFTKVEKVLY--TTLAVAALVVAISIISVQTKAYQVQGEITDLESKISEQKTENDDLKQEVKDL 93 (120)
T ss_pred HHhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHh
Confidence 34455566663 566677777777776664 56778899999999999999999998877766
No 83
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]
Probab=44.38 E-value=58 Score=28.21 Aligned_cols=53 Identities=15% Similarity=0.249 Sum_probs=42.8
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhccCCCc----chHHHHHHhhc
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLEPTG----LFASRLRHLFG 106 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~dss~----v~aSRLR~Ifg 106 (109)
+-+.+.|++|...|..+-+.|-..+...++.|...-....+. |+-..||.|+|
T Consensus 143 ~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~lted~~n~~laYVT~eDI~~i~~ 199 (354)
T KOG2577|consen 143 PERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLRLLTEDVENRRLAYVTYEDIRSIPG 199 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccceeeeHHHHhhccc
Confidence 455667999999999999999999999999998866555554 67778888855
No 84
>PRK10963 hypothetical protein; Provisional
Probab=44.26 E-value=34 Score=26.51 Aligned_cols=40 Identities=30% Similarity=0.381 Sum_probs=31.5
Q ss_pred hhhhhhhhHHhhHHHH---HHhHHHHHHHHHHHHHHhhhhccC
Q 033901 53 QKYRIHDLQEDTSALK---EEQESLTNRMNNIKHSLLHEASLE 92 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~---~en~~l~~rMw~~k~~L~~EA~~d 92 (109)
++.+|+.|+.+..+|. ++|+.+..++..|--.|+.-.+.+
T Consensus 49 LR~r~~~Le~~l~~Li~~A~~Ne~l~~~~~~l~l~Ll~a~~~~ 91 (223)
T PRK10963 49 QRNHIHVLEEEMTLLMEQAIANEDLFYRLLPLQSRLAAADSLQ 91 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 5677888888887775 689999999999999997644443
No 85
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=44.19 E-value=46 Score=26.01 Aligned_cols=46 Identities=9% Similarity=0.234 Sum_probs=38.4
Q ss_pred HHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhh
Q 033901 42 GILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEA 89 (109)
Q Consensus 42 ~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA 89 (109)
.+==+.++++.||+++ +-.-.+.|+++.+.++....+|-++.....
T Consensus 30 qve~~~l~~lkqqqd~--itk~veeLe~~~~q~~~~~s~~~~~~vk~L 75 (165)
T PF09602_consen 30 QVEQQTLKKLKQQQDW--ITKQVEELEKELKQFKREFSDLYEEYVKQL 75 (165)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788999999988 888888899999999999998888877765
No 86
>PRK14160 heat shock protein GrpE; Provisional
Probab=44.10 E-value=43 Score=26.73 Aligned_cols=32 Identities=34% Similarity=0.642 Sum_probs=19.6
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhh
Q 033901 57 IHDLQEDTSALKEEQESLTNRMNNIKHSLLHE 88 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~~k~~L~~E 88 (109)
+.+|+.+...|..+.+.+...+-++++.+++.
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~ 87 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRT 87 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666653
No 87
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=43.97 E-value=23 Score=26.60 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhcc--chhhhhhhhHHhhHHHHHHhHHHHHHH
Q 033901 39 AMTGILLLSVRSL--GQKYRIHDLQEDTSALKEEQESLTNRM 78 (109)
Q Consensus 39 Lmg~~~~Ls~RSl--~Qq~~I~~L~~dkasL~~en~~l~~rM 78 (109)
|+-.-+|..+|=- .=|.+|.+|++....|++||.=|+...
T Consensus 56 LVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 56 LVKTHLMFAVREEVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6667778888742 346789999999999999998877544
No 88
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=43.49 E-value=72 Score=23.30 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=20.1
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhccCCC
Q 033901 57 IHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLEPT 94 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~dss 94 (109)
+.++..+...|+++...+...+..++.+|-...+.+++
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~ 111 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN 111 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 44455555555555555555555555555554444443
No 89
>PF09812 MRP-L28: Mitochondrial ribosomal protein L28; InterPro: IPR019192 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Members of this family are components of the mitochondrial large ribosomal subunit. Mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S) [, ].
Probab=43.36 E-value=54 Score=24.81 Aligned_cols=41 Identities=17% Similarity=0.322 Sum_probs=33.1
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHH---HhhhhccCCCc
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHS---LLHEASLEPTG 95 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~---L~~EA~~dss~ 95 (109)
|+-+.=+++...|++..+++..+|-+++.. ||.+|-....+
T Consensus 82 yk~~~~~~~~~~l~~~~~sq~~AleeLr~~S~eLY~aA~~~d~~ 125 (157)
T PF09812_consen 82 YKQQQREAREQQLRRQYESQQKALEELRLESPELYQAAIQPDPG 125 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHhccCCC
Confidence 344445677888999999999999999965 99999877665
No 90
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=43.26 E-value=43 Score=26.99 Aligned_cols=39 Identities=18% Similarity=0.390 Sum_probs=30.5
Q ss_pred hccchhh-hhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 49 RSLGQKY-RIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 49 RSl~Qq~-~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
||..+.+ +.++.+-....|.+||+.|+..+-.+|++|-.
T Consensus 208 kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~ 247 (269)
T KOG3119|consen 208 KSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELAT 247 (269)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554433 34667788899999999999999999999754
No 91
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=42.31 E-value=1.1e+02 Score=23.42 Aligned_cols=39 Identities=26% Similarity=0.466 Sum_probs=28.9
Q ss_pred Hhhc-cchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033901 47 SVRS-LGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 47 s~RS-l~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
++|= +.+.+...+++.+...|.++++.|...+.+|+...
T Consensus 111 ~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~ 150 (189)
T PF10211_consen 111 GMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKC 150 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 44444577888888888888888888888887654
No 92
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=42.01 E-value=38 Score=27.35 Aligned_cols=41 Identities=27% Similarity=0.459 Sum_probs=33.7
Q ss_pred HhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 47 SVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 47 s~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
-+|++.---.++.++++..+|+++-..++.|+-++|.+--+
T Consensus 108 Eik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~ 148 (201)
T KOG4603|consen 108 EIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNH 148 (201)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35566666678899999999999999999999999876543
No 93
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=41.88 E-value=25 Score=22.72 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=18.9
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHH
Q 033901 54 KYRIHDLQEDTSALKEEQESLTN 76 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~ 76 (109)
+-|+-+||+|-..|||=|++|-+
T Consensus 17 ~vrv~eLEeEV~~LrKINrdLfd 39 (48)
T PF14077_consen 17 RVRVSELEEEVRTLRKINRDLFD 39 (48)
T ss_pred eeeHHHHHHHHHHHHHHhHHHHh
Confidence 34778999999999999988743
No 94
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=41.70 E-value=33 Score=26.13 Aligned_cols=55 Identities=25% Similarity=0.313 Sum_probs=35.9
Q ss_pred hhhhhhhhHHhhHHHH---HHhHHHHHHHHHHHHHHhhhhccCCCc-chHHHHHHhhcc
Q 033901 53 QKYRIHDLQEDTSALK---EEQESLTNRMNNIKHSLLHEASLEPTG-LFASRLRHLFGE 107 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~---~en~~l~~rMw~~k~~L~~EA~~dss~-v~aSRLR~Ifge 107 (109)
++.+++.|+.+.+.|. ++|+.+..++-+|--.|+...+.+.-. +....|+..|+-
T Consensus 52 LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~f~~ 110 (225)
T PF04340_consen 52 LRERNRQLEEQLEELIENARENEAIFQRLHRLVLALLAARSLQELLQALDDGLREDFDV 110 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHTS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Confidence 4456677777777765 579999999999999999765433222 455666666653
No 95
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=41.62 E-value=37 Score=31.29 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=27.6
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
.+|++|+.||+.|.+|+..+.+.|.-.|++|-
T Consensus 518 ~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls 549 (604)
T KOG3863|consen 518 DEVEKLQKEKEQLLRERDELDSTLGVMKQQLS 549 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999998888763
No 96
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=41.54 E-value=59 Score=23.72 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=32.7
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASL 91 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~ 91 (109)
|.+|--||-|...++.-|++|..|+.-+--.|-.|.+.
T Consensus 31 karIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k 68 (134)
T PF08232_consen 31 KARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAK 68 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999998887777766544
No 97
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=41.41 E-value=62 Score=21.67 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=19.9
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033901 56 RIHDLQEDTSALKEEQESLTNRMNNIKHS 84 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~~ 84 (109)
.|..|+-+.+.|+++|..+..--..++++
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~e 47 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEE 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46777888888888777776555555544
No 98
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=41.13 E-value=55 Score=29.30 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=20.0
Q ss_pred hhhh-hhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 53 QKYR-IHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 53 Qq~~-I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
|++. ++++.+|..+.++.+-.|-.-|-.+|+++.+
T Consensus 257 s~~~~l~aileeL~eIk~~q~~Leesye~Lke~~kr 292 (455)
T KOG3850|consen 257 SQGAALDAILEELREIKETQALLEESYERLKEQIKR 292 (455)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 5556666666666666666666666555544
No 99
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=41.06 E-value=37 Score=23.66 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=10.4
Q ss_pred hhhhHHhhHHHHHHhHHHHHHH
Q 033901 57 IHDLQEDTSALKEEQESLTNRM 78 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rM 78 (109)
|..|+.+...|+.|++=|++.+
T Consensus 80 i~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 80 IKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445554444443
No 100
>PRK04325 hypothetical protein; Provisional
Probab=41.04 E-value=96 Score=20.61 Aligned_cols=44 Identities=11% Similarity=0.106 Sum_probs=34.6
Q ss_pred HHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 44 LLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 44 ~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
.=|=.|=.-|.+.|++|-+-.....++.+.|...+..+.+.|-.
T Consensus 12 ~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 12 TELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666788888888888888888888888888888887755
No 101
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=40.83 E-value=13 Score=25.38 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=15.6
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033901 57 IHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
|+.|..+...|.++|+.|...+..++.+|
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l 55 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQL 55 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555555555555555555555555444
No 102
>PF14992 TMCO5: TMCO5 family
Probab=40.81 E-value=28 Score=29.14 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=33.9
Q ss_pred ccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 50 SLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 50 Sl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
|.+.+..+++|+.+++-|.++|+.+++-+-+++.+.-+
T Consensus 58 ~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e 95 (280)
T PF14992_consen 58 SEERETDLQELELETAKLEKENEHLSKSVQELQRKQDE 95 (280)
T ss_pred hhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhcc
Confidence 46788889999999999999999999999999988654
No 103
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=40.50 E-value=66 Score=22.29 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=31.4
Q ss_pred hhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhccCCCcchHHHH
Q 033901 53 QKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLEPTGLFASRL 101 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~dss~v~aSRL 101 (109)
++++++.++++.+.|.++.. ...|.......+.++..|.+ ++.+|
T Consensus 47 ~~~e~~~~~~el~~~~~e~~--~~e~~~~~~~~l~e~GLp~~--l~~~l 91 (125)
T PF14265_consen 47 AQEELEELEKELEELEAELA--RRELRSEAKKVLAEKGLPAE--LADFL 91 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCCHH--HHHHH
Confidence 34677888888888877766 34566777788888888666 55554
No 104
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=40.42 E-value=40 Score=31.10 Aligned_cols=68 Identities=25% Similarity=0.407 Sum_probs=41.2
Q ss_pred CCCchhhHHHHHhh-ccchHHH-HHHHHH-----HHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033901 16 NPKRSLGFIANAKK-HKHSFIQ-LFAMTG-----ILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 16 ~~~r~~g~~a~A~k-~k~~fiq-~~Lmg~-----~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
.+.-.+-|+..|.+ =++.+|. .=++-. +-+|-.---.|..+|++|++++.+|++..+.|..|+-++++
T Consensus 533 ~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d 607 (717)
T PF10168_consen 533 SPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKD 607 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777766 1233332 222111 11233333467788999999999998888888888777653
No 105
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=39.94 E-value=75 Score=24.33 Aligned_cols=32 Identities=19% Similarity=0.449 Sum_probs=25.9
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
.+|+.|.+|.+.++.|.+.++.+.-.+...-+
T Consensus 88 qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 88 QQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46788888888888888888888888887777
No 106
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=39.28 E-value=35 Score=24.85 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhccchhhhhhhhHHhhHHHHH
Q 033901 38 FAMTGILLLSVRSLGQKYRIHDLQEDTSALKE 69 (109)
Q Consensus 38 ~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~ 69 (109)
.++.||...++.|++|-.-+++++++....+.
T Consensus 60 ~~v~gIY~YTi~sV~Qe~F~D~~eeeak~~~~ 91 (100)
T PF09813_consen 60 AFVVGIYAYTIYSVKQEDFLDELEEEAKAARA 91 (100)
T ss_pred HHHHHHHhheeeeechhhhHHHhhhHHHHhhh
Confidence 34456667889999999999999888776655
No 107
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=39.10 E-value=1.6e+02 Score=22.05 Aligned_cols=42 Identities=17% Similarity=0.118 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHH
Q 033901 37 LFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRM 78 (109)
Q Consensus 37 ~~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rM 78 (109)
+++|++++.+++|=.+=+..++.-+......+..+......+
T Consensus 8 ~~a~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL 49 (135)
T TIGR03495 8 GLLVAGLGWQSQRLRNARADLERANRVLKAQQAELASKANQL 49 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334444444444433333333333333333333333333333
No 108
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=38.91 E-value=41 Score=22.96 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=27.2
Q ss_pred chhhhhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033901 52 GQKYRIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 52 ~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
.-+..++.|.+....+.++|..|...+-..++
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34678899999999999999999998877664
No 109
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=38.63 E-value=25 Score=29.70 Aligned_cols=28 Identities=36% Similarity=0.561 Sum_probs=20.3
Q ss_pred hhccchhhhhhhhHHhhHHHHHHhHHHH
Q 033901 48 VRSLGQKYRIHDLQEDTSALKEEQESLT 75 (109)
Q Consensus 48 ~RSl~Qq~~I~~L~~dkasL~~en~~l~ 75 (109)
-|+.+=-|.|.||.+|+.-|+.||+.|.
T Consensus 90 aRm~eme~~i~dL~een~~L~~en~~Lr 117 (292)
T KOG4005|consen 90 ARMEEMEYEIKDLTEENEILQNENDSLR 117 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777888888888777777766554
No 110
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=38.43 E-value=47 Score=27.16 Aligned_cols=34 Identities=32% Similarity=0.460 Sum_probs=28.9
Q ss_pred HhhHHHHHHhHHHHHHHHHHHHHHhhhhccCCCc
Q 033901 62 EDTSALKEEQESLTNRMNNIKHSLLHEASLEPTG 95 (109)
Q Consensus 62 ~dkasL~~en~~l~~rMw~~k~~L~~EA~~dss~ 95 (109)
-|-+-|+.||+.|+.-+-.+|++|.+|-..-.++
T Consensus 116 sEF~~lr~e~EklkndlEk~ks~lr~ei~~~~a~ 149 (220)
T KOG3156|consen 116 SEFANLRAENEKLKNDLEKLKSSLRHEISKTTAE 149 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 4667889999999999999999999997765544
No 111
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=38.15 E-value=60 Score=27.87 Aligned_cols=42 Identities=26% Similarity=0.446 Sum_probs=34.6
Q ss_pred hhhhhhhhHHhhHHHHHHhHHHHHHH------HHHHHHHhhhhccCCC
Q 033901 53 QKYRIHDLQEDTSALKEEQESLTNRM------NNIKHSLLHEASLEPT 94 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~~en~~l~~rM------w~~k~~L~~EA~~dss 94 (109)
.|++|++|+++...+.+|-+...+.+ .+|=|.||.+|..|+.
T Consensus 180 Lqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddaniD~~ 227 (323)
T PF08537_consen 180 LQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDANIDSE 227 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHH
Confidence 47889999999998888887776654 6888999999988873
No 112
>PRK00846 hypothetical protein; Provisional
Probab=37.75 E-value=1.3e+02 Score=20.58 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=35.1
Q ss_pred HHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 43 ILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 43 ~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
+.-|=+|-.-|..-|+.|-+......+..+.|+..|..+++.|-.
T Consensus 15 i~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 15 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666788888888888888888888888888888888876
No 113
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=37.74 E-value=45 Score=22.31 Aligned_cols=33 Identities=18% Similarity=0.450 Sum_probs=22.2
Q ss_pred hhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033901 53 QKYRIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
...++..|+++...|+.+...+..++..++.++
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777766666553
No 114
>PRK10884 SH3 domain-containing protein; Provisional
Probab=37.60 E-value=63 Score=25.37 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=10.6
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHHH
Q 033901 57 IHDLQEDTSALKEEQESLTNRMNNI 81 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~~ 81 (109)
|.+|+++++.|+++...++.....+
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 115
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=36.99 E-value=13 Score=26.21 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=1.5
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
+.+.+|+.+..+|+.+-..|+..+-++.++.-.
T Consensus 13 K~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 13 KELSDLESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp ------------------------------HT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 467888899999999999999998888888776
No 116
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=36.84 E-value=84 Score=21.45 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=30.8
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhh
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHE 88 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~E 88 (109)
..+.+|-+|.+.|..|---|-..+-+++.+||.|
T Consensus 54 ~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~~q 87 (88)
T PF14389_consen 54 KKAKELLEEIALLEAEVAKLEQKVLSLYRQLFQQ 87 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999875
No 117
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=36.71 E-value=80 Score=21.85 Aligned_cols=32 Identities=22% Similarity=0.463 Sum_probs=23.5
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
+++|+.|+...+.|.++-..++..+..+...+
T Consensus 93 ~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 93 DKKIEELTKQIEKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777777776654
No 118
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=36.67 E-value=92 Score=23.58 Aligned_cols=45 Identities=22% Similarity=0.300 Sum_probs=27.6
Q ss_pred HHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 43 ILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 43 ~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
...+-..-...+.+++.|..+...++++.+..+.++.+.|+.|-.
T Consensus 58 ~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 58 IQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445556666666666666666666666666666666654
No 119
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=36.18 E-value=52 Score=26.53 Aligned_cols=31 Identities=16% Similarity=0.379 Sum_probs=23.4
Q ss_pred chhhhhhhhHHhhHHHHHHhHHHHHHHHHHH
Q 033901 52 GQKYRIHDLQEDTSALKEEQESLTNRMNNIK 82 (109)
Q Consensus 52 ~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k 82 (109)
.|+..|..|+.|.++|++.|-.|-.+++=++
T Consensus 104 ~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 104 KQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777788888888888888877777664
No 120
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=36.03 E-value=56 Score=30.42 Aligned_cols=41 Identities=24% Similarity=0.211 Sum_probs=35.7
Q ss_pred hhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhccCC
Q 033901 53 QKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLEP 93 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~ds 93 (109)
-|..+..||+....|-+||+.|+.-=-.+|++|+..++-..
T Consensus 300 KKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~ 340 (655)
T KOG4343|consen 300 KKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQ 340 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCc
Confidence 45678899999999999999999999999999999776443
No 121
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=35.74 E-value=56 Score=22.56 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=18.8
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHHH
Q 033901 57 IHDLQEDTSALKEEQESLTNRMNNI 81 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~~ 81 (109)
|-+|-++.+.|++++..|+.++.-.
T Consensus 73 vl~LLd~i~~Lr~el~~L~~~l~~~ 97 (101)
T PRK10265 73 ALTLLDEIAHLKQENRLLRQRLSRF 97 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888888888766543
No 122
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=35.48 E-value=2.6e+02 Score=23.30 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=14.5
Q ss_pred hhhhhhhhHHhhHHHHHHhH-HHHHHH
Q 033901 53 QKYRIHDLQEDTSALKEEQE-SLTNRM 78 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~~en~-~l~~rM 78 (109)
++.+++.|+.+...+....+ .....+
T Consensus 58 ~~~~~~~L~~ql~~~~~~~~~~~~~~l 84 (372)
T PF04375_consen 58 LQQQLQALQQQLQQLQQQLEAQQAQQL 84 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45566667666666665555 333333
No 123
>PRK02793 phi X174 lysis protein; Provisional
Probab=35.33 E-value=96 Score=20.51 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=32.4
Q ss_pred HHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 46 LSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 46 Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
|=.|=.-|.+.|++|-+-.....++.+.|...+..+++.|-.
T Consensus 13 LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 13 LESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555688888888888888888888888888888887755
No 124
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=35.18 E-value=84 Score=22.08 Aligned_cols=29 Identities=24% Similarity=0.475 Sum_probs=19.0
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033901 57 IHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
++.|+++...+.++++.++..+..+++++
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 110 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEEI 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666554
No 125
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=35.16 E-value=59 Score=23.77 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=23.6
Q ss_pred HhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033901 47 SVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 47 s~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
-++++...=-.++|......|+++++.|..++-.+++
T Consensus 101 eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 101 ELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555556666677777777777777776666654
No 126
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=34.58 E-value=66 Score=22.22 Aligned_cols=27 Identities=26% Similarity=0.517 Sum_probs=20.3
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHH
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNI 81 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~ 81 (109)
.||+..++|...|+.||+-|..-+.++
T Consensus 37 ~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 37 DRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777888888888887777666
No 127
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=34.51 E-value=54 Score=20.13 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=12.7
Q ss_pred cchhhhhhhhHHhhHHHHHHhHHHHHHH
Q 033901 51 LGQKYRIHDLQEDTSALKEEQESLTNRM 78 (109)
Q Consensus 51 l~Qq~~I~~L~~dkasL~~en~~l~~rM 78 (109)
.-|.-+|.+|+.+...|..||..++...
T Consensus 17 s~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 17 SALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -------------HHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3456688999999999999999887654
No 128
>PF01741 MscL: Large-conductance mechanosensitive channel, MscL; InterPro: IPR001185 Mechanosensitive ion channels (MscL) play a critical role in transducing physical stresses at the cell membrane into an electrochemical response. MscL is a protein which forms a channel organised as a homopentamer, with each subunit containing two transmembrane regions []. Prokaryotes harbor a large-conductance mechanosensitive channel (gene mscL) that opens in response to stretch forces in the membrane lipid bilayer and may participate in the regulation of osmotic pressure changes within the cell [].; GO: 0005216 ion channel activity, 0006810 transport, 0016021 integral to membrane; PDB: 3HZQ_A 2OAR_A.
Probab=34.49 E-value=78 Score=23.24 Aligned_cols=49 Identities=12% Similarity=0.297 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHH
Q 033901 32 HSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNN 80 (109)
Q Consensus 32 ~~fiq~~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~ 80 (109)
+.+|++++++-++.+-+|-.+.-.+-++-+++.+.-.++...+...++|
T Consensus 75 ~a~I~FlIiA~vvFlivk~~nk~~~~~~~~~~~~~~~~~~~~ll~eIrd 123 (128)
T PF01741_consen 75 NALINFLIIAFVVFLIVKPINKLKKKEEKEEAEAPAPKTCEELLTEIRD 123 (128)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHCHHTT-S----H--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCchHHHHHHHHH
Confidence 4578899999888888877654433333322222223355555554444
No 129
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=34.42 E-value=77 Score=24.62 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=11.6
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033901 57 IHDLQEDTSALKEEQESLTNRMNNIKHS 84 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~~k~~ 84 (109)
|+.|..+.+.|+..|+.+.+.+-+.+++
T Consensus 58 ~~~l~~e~e~L~~~~~~l~~~v~~q~~e 85 (251)
T PF11932_consen 58 YRQLEREIENLEVYNEQLERQVASQEQE 85 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444333
No 130
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=34.41 E-value=82 Score=23.81 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=29.6
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhh
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHE 88 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~E 88 (109)
++++++|..-...|..+-+.|+.++..+.+++-..
T Consensus 100 ~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 100 KKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888899999999998887653
No 131
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=34.12 E-value=51 Score=28.02 Aligned_cols=30 Identities=17% Similarity=0.431 Sum_probs=22.6
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
..+|+++.+....|+++++.|++.+.+++.
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456788888888888888888887766653
No 132
>PRK10772 cell division protein FtsL; Provisional
Probab=34.04 E-value=1.8e+02 Score=21.05 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=48.5
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 033901 23 FIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASL 91 (109)
Q Consensus 23 ~~a~A~k~k~~fiq~~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~ 91 (109)
|+.-... .+.++++|+..+++-++=-...+|.=+.|=.+...+..+.+.|-. +|.+=++++.+-
T Consensus 15 I~~Dl~~--~~kl~l~Ll~~vv~SAl~VV~~~h~tR~l~~ele~l~~e~~~Le~---Ew~~L~LEqstl 78 (108)
T PRK10772 15 IGDDLLR--NGKLPLCLFIAVIVSAVTVVTTAHHTRLLTAEREQLVLERDALDI---EWRNLILEENAL 78 (108)
T ss_pred HHHHHHH--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 4445543 466777788888887777788899999999999999998887764 677777777654
No 133
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=34.03 E-value=94 Score=20.76 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=13.1
Q ss_pred hHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033901 60 LQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 60 L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
...+...|+++-+.+......++.++
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~ 93 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEI 93 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554443
No 134
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=33.96 E-value=76 Score=24.76 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=17.1
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
.++..|+.+...|.+|++.|......++++-
T Consensus 111 ~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 111 NQNESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555566666666655555555543
No 135
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=33.90 E-value=83 Score=23.73 Aligned_cols=36 Identities=17% Similarity=0.341 Sum_probs=29.9
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhh
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEA 89 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA 89 (109)
+.+|..|.++..+|...-+.+-..++..+++|..--
T Consensus 28 ~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 28 QARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999888888889998888886643
No 136
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=33.90 E-value=1.9e+02 Score=21.11 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=6.1
Q ss_pred HHHHHHHHhhccchh
Q 033901 40 MTGILLLSVRSLGQK 54 (109)
Q Consensus 40 mg~~~~Ls~RSl~Qq 54 (109)
.+|+..+..+...+.
T Consensus 54 ~~g~~~~~~~~~~~~ 68 (191)
T PF04156_consen 54 SLGLLCLLSKRPVQS 68 (191)
T ss_pred HHHHHHHHHcccccc
Confidence 333434444444333
No 137
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=33.88 E-value=80 Score=18.79 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=22.1
Q ss_pred hHHHHHhhccchHHHHHHHHHHHHHHh
Q 033901 22 GFIANAKKHKHSFIQLFAMTGILLLSV 48 (109)
Q Consensus 22 g~~a~A~k~k~~fiq~~Lmg~~~~Ls~ 48 (109)
.+..+..+||-.++-++++.-++++++
T Consensus 7 ~~~~~f~~nk~a~~gl~il~~~vl~ai 33 (56)
T PF12911_consen 7 DAWRRFRRNKLAVIGLIILLILVLLAI 33 (56)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 456777889999999888888888875
No 138
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=33.57 E-value=56 Score=29.32 Aligned_cols=21 Identities=10% Similarity=0.227 Sum_probs=11.2
Q ss_pred chhhhhhhhHHhhHHHHHHhH
Q 033901 52 GQKYRIHDLQEDTSALKEEQE 72 (109)
Q Consensus 52 ~Qq~~I~~L~~dkasL~~en~ 72 (109)
.||.+.++||.+.+.|+.|.+
T Consensus 73 eqQ~kasELEKqLaaLrqElq 93 (475)
T PRK13729 73 EMQVTAAQMQKQYEEIRRELD 93 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555566655555554433
No 139
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=33.43 E-value=76 Score=26.96 Aligned_cols=53 Identities=11% Similarity=0.162 Sum_probs=31.2
Q ss_pred CCchhhHHHHHhhccchHHHHHHHHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHH
Q 033901 17 PKRSLGFIANAKKHKHSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNI 81 (109)
Q Consensus 17 ~~r~~g~~a~A~k~k~~fiq~~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~ 81 (109)
..+.-+..-++.+||- .+.=.| -.|+.+.|+|.-|...|.++|+.|+.+.-.+
T Consensus 222 ~~~~~~~~rkr~qnk~-----------AAtRYR-qKkRae~E~l~ge~~~Le~rN~~LK~qa~~l 274 (294)
T KOG4571|consen 222 KTPEKKLRRKRQQNKA-----------AATRYR-QKKRAEKEALLGELEGLEKRNEELKDQASEL 274 (294)
T ss_pred CCchHHHHHHHHHhHH-----------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777777653 233333 2344455677777777777777777665444
No 140
>PRK11677 hypothetical protein; Provisional
Probab=33.14 E-value=1.8e+02 Score=21.66 Aligned_cols=27 Identities=22% Similarity=0.150 Sum_probs=11.2
Q ss_pred HHHhhccchh-hhhhhhHHhhHHHHHHh
Q 033901 45 LLSVRSLGQK-YRIHDLQEDTSALKEEQ 71 (109)
Q Consensus 45 ~Ls~RSl~Qq-~~I~~L~~dkasL~~en 71 (109)
.+.+|...-. ++...|+.+.+..+.|.
T Consensus 18 ~~~~R~~~~~~~~q~~le~eLe~~k~el 45 (134)
T PRK11677 18 AVAMRFGNRKLRQQQALQYELEKNKAEL 45 (134)
T ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHH
Confidence 3444543322 23344444444444443
No 141
>PRK09343 prefoldin subunit beta; Provisional
Probab=32.83 E-value=1.2e+02 Score=21.59 Aligned_cols=51 Identities=12% Similarity=0.198 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhc---cchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhh
Q 033901 39 AMTGILLLSVRS---LGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEA 89 (109)
Q Consensus 39 Lmg~~~~Ls~RS---l~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA 89 (109)
++|-+|+..=++ .+-..+++-++.+...|.+..+.+...+.+.++.|...-
T Consensus 59 ~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 59 IVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666655433 245678899999999999999999999999999887643
No 142
>PRK10972 Z-ring-associated protein; Provisional
Probab=32.81 E-value=58 Score=23.56 Aligned_cols=36 Identities=25% Similarity=0.518 Sum_probs=32.5
Q ss_pred hhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033901 48 VRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 48 ~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
+.=+||.|+|.==.++.+.|.+.-.-|-.+|.++|+
T Consensus 8 v~ILgr~y~v~Cp~~e~~~L~~AA~~Ld~km~~ir~ 43 (109)
T PRK10972 8 IQIFGRSLRVNCPPEQRDALNQAAEDLNQRLQDLKE 43 (109)
T ss_pred EEECCceeEecCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 344789999999999999999999999999999987
No 143
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=32.28 E-value=68 Score=28.07 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=34.1
Q ss_pred HHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHH--HHHHHHHHhh
Q 033901 42 GILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNR--MNNIKHSLLH 87 (109)
Q Consensus 42 ~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~r--Mw~~k~~L~~ 87 (109)
.++-|-++++- +-+++.|++|.+.|.++.+.|+++ ..=|+++|-+
T Consensus 390 ~lL~m~L~~LT-~~e~~kL~~e~~~l~~ei~~l~~~t~~~~w~~DL~~ 436 (439)
T PHA02592 390 KLVAMNIYSMT-SDEREKLQKEAEELEKEHEYWKKTTAKKEYIKDLEE 436 (439)
T ss_pred HHHHhHHHHhh-HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667778877 567889999999999999998876 4446776643
No 144
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=32.05 E-value=76 Score=23.79 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=21.9
Q ss_pred HHHHhhcc---chhhhhhhhHHhhHHHHHHhHHHHHH
Q 033901 44 LLLSVRSL---GQKYRIHDLQEDTSALKEEQESLTNR 77 (109)
Q Consensus 44 ~~Ls~RSl---~Qq~~I~~L~~dkasL~~en~~l~~r 77 (109)
..+.||+. +++-+++.||...++|+-+...++..
T Consensus 65 ~Sla~r~~~l~~~~~~L~~Le~r~e~Lk~~~~~~~~~ 101 (120)
T PF04521_consen 65 ESLAWRHAQLSDLNLELEKLERREEQLKTQIQVLTAA 101 (120)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677754 56666777777777776666665544
No 145
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=31.96 E-value=76 Score=26.97 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=27.2
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 56 RIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
++++|+.++..||..-..|-+-|.-+||-+++
T Consensus 256 e~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 256 ELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999999888888888888887664
No 146
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.77 E-value=2e+02 Score=20.70 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=7.0
Q ss_pred hhhHHhhHHHHHHhH
Q 033901 58 HDLQEDTSALKEEQE 72 (109)
Q Consensus 58 ~~L~~dkasL~~en~ 72 (109)
..|+.+.+..+.|.+
T Consensus 28 ~~l~~eL~~~k~el~ 42 (128)
T PF06295_consen 28 AKLEQELEQAKQELE 42 (128)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445554444444443
No 147
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=31.63 E-value=1.2e+02 Score=19.85 Aligned_cols=35 Identities=11% Similarity=0.372 Sum_probs=26.1
Q ss_pred chhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033901 52 GQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 52 ~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
+...+|++|++..+.|..+-+.+.++-.++++...
T Consensus 28 ~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~ 62 (89)
T PF00957_consen 28 ERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMW 62 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45667888888888888888877777666666543
No 148
>PRK15396 murein lipoprotein; Provisional
Probab=31.54 E-value=1.2e+02 Score=20.90 Aligned_cols=48 Identities=10% Similarity=0.165 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhccch-hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033901 36 QLFAMTGILLLSVRSLGQ-KYRIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 36 q~~Lmg~~~~Ls~RSl~Q-q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
.++|++|-.-- -.++| +.+++.|..+.+.|..+..+++...-.-|++-
T Consensus 14 s~~LLaGCAs~--~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA 62 (78)
T PRK15396 14 GSTLLAGCSSN--AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDA 62 (78)
T ss_pred HHHHHHHcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666533 47777 88999999999999999999999988888753
No 149
>PRK11239 hypothetical protein; Provisional
Probab=30.83 E-value=85 Score=25.56 Aligned_cols=32 Identities=28% Similarity=0.304 Sum_probs=26.5
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
..++.+|+++.+.|+.|-..|+.++-.++++|
T Consensus 182 ~~~~~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 182 NAVDGDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677899999999999999998888887765
No 150
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=30.78 E-value=1e+02 Score=21.70 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=27.3
Q ss_pred chhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033901 52 GQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 52 ~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
.-+.+++.+..+.+.|+++.+.....+..+|+++
T Consensus 84 ~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 84 QLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3356778888888888888888888888888764
No 151
>PRK09256 hypothetical protein; Provisional
Probab=30.66 E-value=25 Score=26.14 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=11.8
Q ss_pred CCCCCCCCCCCCchh
Q 033901 7 PSSAGSTAQNPKRSL 21 (109)
Q Consensus 7 ~~~~~~~~~~~~r~~ 21 (109)
+-|+|||||+-|++=
T Consensus 20 ~RSSGPGGQ~VNKt~ 34 (138)
T PRK09256 20 IRASGPGGQNVNKVS 34 (138)
T ss_pred EEcCCCCcccccccc
Confidence 347899999998863
No 152
>PRK00846 hypothetical protein; Provisional
Probab=30.62 E-value=1.4e+02 Score=20.56 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=24.3
Q ss_pred HHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033901 46 LSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHS 84 (109)
Q Consensus 46 Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~ 84 (109)
||+|--.=..||.+||...+=....-+.|...+..-++.
T Consensus 4 ~~~~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~ 42 (77)
T PRK00846 4 LSLRDQALEARLVELETRLSFQEQALTELSEALADARLT 42 (77)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555677777777766666666666666654433
No 153
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=30.18 E-value=1.3e+02 Score=19.58 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=30.2
Q ss_pred hhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 53 QKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
...-+..|+++.+.+..+-+.|.+.+..+...+-.
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~ 94 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKE 94 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999888765
No 154
>PF15294 Leu_zip: Leucine zipper
Probab=30.14 E-value=81 Score=26.39 Aligned_cols=16 Identities=44% Similarity=0.569 Sum_probs=8.4
Q ss_pred hhhhhhhHHhhHHHHH
Q 033901 54 KYRIHDLQEDTSALKE 69 (109)
Q Consensus 54 q~~I~~L~~dkasL~~ 69 (109)
+++|+.|++|+..|+.
T Consensus 131 ~kEi~rLq~EN~kLk~ 146 (278)
T PF15294_consen 131 NKEIDRLQEENEKLKE 146 (278)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555544
No 155
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=29.83 E-value=67 Score=28.39 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=21.1
Q ss_pred HhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 62 EDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 62 ~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
+|...||.||.+|++-..++|-++-+
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVer 57 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVER 57 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHH
Confidence 57788888888888888888888776
No 156
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=29.76 E-value=33 Score=22.74 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=17.1
Q ss_pred hhhhhhHHhhHHHHHHhHHHH
Q 033901 55 YRIHDLQEDTSALKEEQESLT 75 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~ 75 (109)
.-+.+|-+|...|+++|++|+
T Consensus 21 ~tL~~LH~EIe~Lq~~~~dL~ 41 (60)
T PF14916_consen 21 QTLKGLHAEIERLQKRNKDLT 41 (60)
T ss_pred HHHHHHHHHHHHHHHhccccc
Confidence 347888889999999988875
No 157
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=29.71 E-value=1.1e+02 Score=22.19 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=23.0
Q ss_pred cchhhhhhhhHHhhHHHHHHhHHHHHHHHHH
Q 033901 51 LGQKYRIHDLQEDTSALKEEQESLTNRMNNI 81 (109)
Q Consensus 51 l~Qq~~I~~L~~dkasL~~en~~l~~rMw~~ 81 (109)
-.|-.+|..|++|.....+|.+..-+....+
T Consensus 100 e~Q~~~i~~L~~E~~~~~~el~~~v~e~e~l 130 (144)
T PF11221_consen 100 EEQLKRIKELEEENEEAEEELQEAVKEAEEL 130 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688899999999888887777665554443
No 158
>PRK10884 SH3 domain-containing protein; Provisional
Probab=29.65 E-value=74 Score=24.99 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=20.8
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
..+.+++.....|+++|+.|+..+-..|.++-.
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555777777777777777777654
No 159
>PRK14127 cell division protein GpsB; Provisional
Probab=29.56 E-value=1.1e+02 Score=22.14 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=18.8
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHS 84 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~ 84 (109)
.++..|+++...|+++.+.+..+....+..
T Consensus 44 ~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~ 73 (109)
T PRK14127 44 KEIEELQQENARLKAQVDELTKQVSVGASS 73 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 356666666666666666666666655443
No 160
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=29.42 E-value=56 Score=18.10 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=10.5
Q ss_pred HhHHHHHHHHHHHHHH
Q 033901 70 EQESLTNRMNNIKHSL 85 (109)
Q Consensus 70 en~~l~~rMw~~k~~L 85 (109)
|-+.++.|+.|++.+|
T Consensus 2 E~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 2 EMNRLRNRISDLERQL 17 (23)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3455667777777766
No 161
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=29.38 E-value=1.2e+02 Score=22.21 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=13.3
Q ss_pred hhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033901 59 DLQEDTSALKEEQESLTNRMNNIKHS 84 (109)
Q Consensus 59 ~L~~dkasL~~en~~l~~rMw~~k~~ 84 (109)
+|.+-..+|+.++++..+|+.+++-.
T Consensus 41 ~L~~~l~~L~~q~~s~~qr~~eLqak 66 (107)
T PF09304_consen 41 QLRNALQSLQAQNASRNQRIAELQAK 66 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555543
No 162
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=29.35 E-value=50 Score=26.83 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=14.8
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHH
Q 033901 56 RIHDLQEDTSALKEEQESLTNRMN 79 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw 79 (109)
+++.++.+..+|++||+.|++-+|
T Consensus 84 ~~~~~~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 84 ELEQLLEEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455556666677777776665443
No 163
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=29.16 E-value=99 Score=25.07 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=19.2
Q ss_pred hccchhhhhhhhHHhhHHHHHHhHHHH
Q 033901 49 RSLGQKYRIHDLQEDTSALKEEQESLT 75 (109)
Q Consensus 49 RSl~Qq~~I~~L~~dkasL~~en~~l~ 75 (109)
-+-.|++.||+|+-|+..|+++-+.|.
T Consensus 113 ~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 113 KSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677888888777777777766655
No 164
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=28.97 E-value=1.6e+02 Score=18.91 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=38.4
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHH------------------HhhhhccCCCcchHHHHHHhhc
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHS------------------LLHEASLEPTGLFASRLRHLFG 106 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~------------------L~~EA~~dss~v~aSRLR~Ifg 106 (109)
.+|+.+..+.-.|-.+.-.+...+..+|.+ -+.++ ...+.+..-++.||.
T Consensus 6 ~~ID~iD~~iv~Ll~~R~~~~~~i~~~K~~~~~~~~i~d~~Re~~vl~~~~~~--~~~~l~~~~i~~if~ 73 (76)
T TIGR01807 6 NKIDAIDDRILDLLSERATYAQAVGELKGSGASGASFYRPEREAQVIRRLQNL--NKGPLDQEAIARIFR 73 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCChHHHHHHHHHHHHh--ccCCCCHHHHHHHHH
Confidence 579999999999999999999999999987 22222 234567777777774
No 165
>PHA02047 phage lambda Rz1-like protein
Probab=28.86 E-value=2.2e+02 Score=20.85 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=26.5
Q ss_pred HHHHHhhccchhh-hhhhhHHhhHHHHHHhHHHH-----------HHHHHHHHHHhh
Q 033901 43 ILLLSVRSLGQKY-RIHDLQEDTSALKEEQESLT-----------NRMNNIKHSLLH 87 (109)
Q Consensus 43 ~~~Ls~RSl~Qq~-~I~~L~~dkasL~~en~~l~-----------~rMw~~k~~L~~ 87 (109)
-++.++|=+||-| ++++|+++.+.++.....+- .+=.++|+.|-.
T Consensus 21 ~~~~~~r~~g~~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~ 77 (101)
T PHA02047 21 GFVQSYRALGIAHEEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQ 77 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456789878755 46666666666555443333 234556666664
No 166
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=28.76 E-value=1.1e+02 Score=27.14 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=34.1
Q ss_pred hhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhccCCCc
Q 033901 53 QKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLEPTG 95 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~dss~ 95 (109)
.+.+++.|.+.+..|.+..+..+..+..+|++|-..+..+++-
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~~~ 48 (512)
T TIGR03689 6 LQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQPPSTY 48 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcce
Confidence 3567777778888888888888888888888888888887764
No 167
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=28.39 E-value=2.5e+02 Score=21.03 Aligned_cols=48 Identities=10% Similarity=0.065 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhh
Q 033901 37 LFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHE 88 (109)
Q Consensus 37 ~~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~E 88 (109)
++++.+++.++| |.|+.+.|..+.+.-.++.+..+..+...+.+|...
T Consensus 5 ~l~~~a~~~~~~----~~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l 52 (135)
T TIGR03495 5 VLLGLLVAGLGW----QSQRLRNARADLERANRVLKAQQAELASKANQLIVL 52 (135)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 455555555544 679999999999999999999999999999988763
No 168
>PF12834 Phage_int_SAM_2: Phage integrase, N-terminal; InterPro: IPR024457 Phage integrase proteins cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. This entry represents the N-terminal predicted alpha-helical domain found in a family of putative prophage DNA-binding integrases.
Probab=28.12 E-value=36 Score=23.24 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=35.2
Q ss_pred chHHHHHHHHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033901 32 HSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 32 ~~fiq~~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
..|+..+.-.||-+-.++++..|| |+.|-+.-.+--.+...+..+|..++-
T Consensus 30 ~~~~~~L~~~g~~i~~~~~lk~kH-I~~lv~~w~~~gis~~TiqN~ms~lR~ 80 (91)
T PF12834_consen 30 KRFARFLRELGFQIRSIRNLKPKH-IEALVQHWKAQGISPRTIQNEMSALRW 80 (91)
T ss_pred HHHHHHHHHCCCCcCCHHHhhHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 346666677799999999999988 555555444444555667777776653
No 169
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=28.11 E-value=1.2e+02 Score=21.56 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=31.3
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEAS 90 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~ 90 (109)
.+|.+|..+...|.+||..|+----++|+.|-....
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999988877544
No 170
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=27.75 E-value=61 Score=21.49 Aligned_cols=19 Identities=37% Similarity=0.560 Sum_probs=12.0
Q ss_pred hhhhhHHhhHHHHHHhHHH
Q 033901 56 RIHDLQEDTSALKEEQESL 74 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l 74 (109)
++.+|.++...|++|++..
T Consensus 48 e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 48 ENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4666666666666665543
No 171
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=27.68 E-value=82 Score=28.66 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=15.1
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 63 DTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 63 dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
+++.|+++-.+|.++|.+++.+|-+
T Consensus 26 ~i~~L~~ql~aLq~~v~eL~~~laa 50 (514)
T PF11336_consen 26 QIKALQAQLQALQDQVNELRAKLAA 50 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555566667777777665
No 172
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=27.56 E-value=2.3e+02 Score=24.16 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=13.1
Q ss_pred HhhccchhhhhhhhHHhhHHHHHHhHHHHH
Q 033901 47 SVRSLGQKYRIHDLQEDTSALKEEQESLTN 76 (109)
Q Consensus 47 s~RSl~Qq~~I~~L~~dkasL~~en~~l~~ 76 (109)
+..-..|+...++|+.+.+..++..+.+..
T Consensus 267 g~~i~r~r~l~~~L~~~l~~~~~l~~~L~~ 296 (495)
T PRK11644 267 GAGIQRQRELNQSLQKELARNRHLAERLLE 296 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555554444444433333
No 173
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=27.48 E-value=1.4e+02 Score=20.51 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=17.7
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
++++.|+.....|.+.-..++..+..|.+.|
T Consensus 93 ~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 93 KRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555556655555665555555543
No 174
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=27.30 E-value=1.1e+02 Score=20.57 Aligned_cols=32 Identities=28% Similarity=0.526 Sum_probs=18.8
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
++||..|++....|.++-+.+..++..+.+.+
T Consensus 83 ~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l 114 (120)
T PF02996_consen 83 KKRIKELEEQLEKLEKELAELQAQIEQLEQTL 114 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666655555443
No 175
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=27.27 E-value=1e+02 Score=21.33 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=9.4
Q ss_pred HHHHHhHHHHHHHHHHHHHH
Q 033901 66 ALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 66 sL~~en~~l~~rMw~~k~~L 85 (109)
.|.+||..|+.+++.++.+|
T Consensus 4 ei~eEn~~Lk~eiqkle~EL 23 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAEL 23 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555443333
No 176
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.26 E-value=1.9e+02 Score=23.67 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHhh--ccchhhhhhhhHHhhHHHHH
Q 033901 33 SFIQLFAMTGILLLSVR--SLGQKYRIHDLQEDTSALKE 69 (109)
Q Consensus 33 ~fiq~~Lmg~~~~Ls~R--Sl~Qq~~I~~L~~dkasL~~ 69 (109)
-||-+++|..|+.||+= =.+++.+++.++++-..|+.
T Consensus 25 lv~~lL~~~~V~~lGy~f~~s~k~eel~~~~~eEe~LKs 63 (211)
T COG3167 25 LVFCLLAVAAVLGLGYAFYLSGKLEELEELEAEEEELKS 63 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 35555666666666652 23455555555555444443
No 177
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=27.05 E-value=1.1e+02 Score=24.75 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=27.6
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHS 84 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~ 84 (109)
+.|..+||+|...+..+...|+..+-.+|.+
T Consensus 92 R~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 92 RQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999876
No 178
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=26.92 E-value=1e+02 Score=23.16 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=31.9
Q ss_pred HhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 47 SVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 47 s~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
+=|-.+= .+++.|=..+..|++.|+.|..++.-|.+.|.+
T Consensus 28 ~erc~Da-qrleel~~knqqLreQqk~L~e~i~~LE~RLRa 67 (120)
T PF10482_consen 28 KERCLDA-QRLEELFSKNQQLREQQKTLHENIKVLENRLRA 67 (120)
T ss_pred HHHcccH-HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455552 367888888999999999999999999888864
No 179
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=26.55 E-value=2e+02 Score=24.55 Aligned_cols=30 Identities=30% Similarity=0.489 Sum_probs=13.8
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
+.+|..|+.++..|+.+.+..+.+-..+..
T Consensus 26 ~~~~~sL~qen~~Lk~El~~ek~~~~~L~~ 55 (310)
T PF09755_consen 26 RKRIESLQQENRVLKRELETEKARCKHLQE 55 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 180
>PF12781 AAA_9: ATP-binding dynein motor region D5; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=26.20 E-value=74 Score=24.89 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=32.3
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEAS 90 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~ 90 (109)
+++--+|++++..|.+++...+.++.++.+.|+..=+
T Consensus 165 ~~e~PeLe~~r~~L~~~~~~~k~~L~~lEd~lL~~Ls 201 (228)
T PF12781_consen 165 KHERPELEEQRNELLKEIAENKIQLKELEDQLLELLS 201 (228)
T ss_dssp HHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999999999998433
No 181
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=26.12 E-value=69 Score=26.89 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=13.4
Q ss_pred chhhhhhhhHHhhHHHHHHhHHHHH
Q 033901 52 GQKYRIHDLQEDTSALKEEQESLTN 76 (109)
Q Consensus 52 ~Qq~~I~~L~~dkasL~~en~~l~~ 76 (109)
.|+..|++|+.+.++|+.+.+....
T Consensus 85 ~q~~~i~~l~~~i~~l~~~i~~y~~ 109 (301)
T PF06120_consen 85 AQKRAIEDLQKKIDSLKDQIKNYQQ 109 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544433
No 182
>PRK04406 hypothetical protein; Provisional
Probab=26.02 E-value=2.1e+02 Score=19.17 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=34.5
Q ss_pred HHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 44 LLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 44 ~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
.=|=.|=.-|.+.|++|-+-.....++.+.|...+..+++.|-.
T Consensus 14 ~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 14 NDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666788888888888888888888888888888888754
No 183
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=25.96 E-value=1.3e+02 Score=23.71 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhccCCCcc-hHHHHHHhhcc
Q 033901 32 HSFIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLEPTGL-FASRLRHLFGE 107 (109)
Q Consensus 32 ~~fiq~~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~dss~v-~aSRLR~Ifge 107 (109)
+.+..++|.+++..+ | ||...-.-.---..-.+..|+.+...+.+|-.++...-....... ...+|+.+|-+
T Consensus 5 ~Ai~~Fll~~Air~~--r--g~~~~~~SMLIH~S~~~~~h~~~~~~I~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 77 (239)
T PF10593_consen 5 DAIRWFLLACAIRRL--R--GQGNKHNSMLIHTSRFVDVHEQVADWIEEYLNELKKALRYNDDDPEELNELRELWEE 77 (239)
T ss_pred HHHHHHHHHHHHHHH--h--CCCCCCceeEEECcccHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence 445555555555444 3 552222222222334455555555555554444444332222221 26677766643
No 184
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=25.86 E-value=1.3e+02 Score=26.95 Aligned_cols=47 Identities=17% Similarity=0.284 Sum_probs=30.0
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHH---HHHhhhhccCCCcchHHHHHHhhc
Q 033901 56 RIHDLQEDTSALKEEQESLTNRMNNIK---HSLLHEASLEPTGLFASRLRHLFG 106 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k---~~L~~EA~~dss~v~aSRLR~Ifg 106 (109)
+.+||...+++|.+..+.|...|...- .+-|...-. .|..-.+.||+
T Consensus 1001 q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~----~f~~~F~~lf~ 1050 (1179)
T TIGR02168 1001 RYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFD----QVNENFQRVFP 1050 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 455666666666666666666666666 555555443 66666777775
No 185
>TIGR01799 CM_T chorismate mutase domain of T-protein. This model represents the chorismate mutase domain of the gamma proteobacterial "T-protein" which consists of an N-terminal chorismate mutase domain and a C-terminal prephenate dehydrogenase domain.
Probab=25.44 E-value=2e+02 Score=18.83 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=28.1
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHS 84 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~ 84 (109)
..+|+.+..+...|-.+.-.+...+..+|.+
T Consensus 5 R~~ID~ID~~il~Ll~~R~~~~~~ia~~K~~ 35 (83)
T TIGR01799 5 RGEIDGVDQELLHLLAKRLELVAQVGKVKHA 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999985
No 186
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=25.42 E-value=1.6e+02 Score=23.73 Aligned_cols=44 Identities=14% Similarity=0.339 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhhccchhhhhhhhHHhh-------HHHHHHhHHHHHHHH
Q 033901 36 QLFAMTGILLLSVRSLGQKYRIHDLQEDT-------SALKEEQESLTNRMN 79 (109)
Q Consensus 36 q~~Lmg~~~~Ls~RSl~Qq~~I~~L~~dk-------asL~~en~~l~~rMw 79 (109)
+..+-|+++.|+.=+..|..-++++-+++ ++++.+...+..+.+
T Consensus 103 nmyl~g~~L~l~~~v~~~~~~v~~ml~~~~~~~~k~D~~eA~~t~lk~~~~ 153 (192)
T COG5374 103 NMYLSGSALFLSIVVMRVMSIVEEMLEENAKKGGKIDKMEADSTDLKARLR 153 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcchHHHHHHHh
Confidence 45566788899999999999998888888 777777777777766
No 187
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=25.27 E-value=1.4e+02 Score=23.31 Aligned_cols=30 Identities=17% Similarity=0.429 Sum_probs=19.1
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033901 56 RIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
+-+.|+.+...|+++|+.|......+++++
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666554
No 188
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=24.94 E-value=2e+02 Score=18.62 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=28.3
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHS 84 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~ 84 (109)
..+|+++..+.-.|-.+.-.+...+..+|.+
T Consensus 5 R~~Id~iD~~i~~Ll~~R~~l~~~i~~~K~~ 35 (83)
T TIGR01791 5 RQEIEEIDKSILDLIEKRIKIARKIGEIKHN 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999986
No 189
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=24.87 E-value=1.1e+02 Score=28.59 Aligned_cols=30 Identities=30% Similarity=0.535 Sum_probs=14.2
Q ss_pred hhhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033901 56 RIHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 56 ~I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
.++.|+.++.+|+.+++.|++.+-.++.+|
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~l 459 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESEL 459 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555444444444444444443
No 190
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.71 E-value=2e+02 Score=21.26 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=20.3
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
.+++.|+-+...|.+..+.+..++-.+|..|..
T Consensus 77 er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 77 ERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666666666666666654
No 191
>PRK09737 EcoKI restriction-modification system protein HsdS; Provisional
Probab=24.44 E-value=1.5e+02 Score=23.80 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=0.0
Q ss_pred ccchhhhh----hhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhh
Q 033901 50 SLGQKYRI----HDLQEDTSALKEEQESLTNRMNNIKHSLLHEA 89 (109)
Q Consensus 50 Sl~Qq~~I----~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA 89 (109)
+++.|.+| +.+.+..+.+.++.+.....+.++|+.|+.+|
T Consensus 371 pl~EQ~kI~~~l~~l~~~~d~i~~~~~~~l~~L~~lKqslLqk~ 414 (461)
T PRK09737 371 PLEEQAEIVRRVEQLFAYADTIEKQVNNALARVNNLTQSILAKA 414 (461)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 192
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=24.09 E-value=1.8e+02 Score=23.56 Aligned_cols=35 Identities=17% Similarity=0.389 Sum_probs=29.3
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhh
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEA 89 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA 89 (109)
.+++.|+++...++.|.+.+.+.+.++|+++...-
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 6 VRIRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46888999999999999999999999988886543
No 193
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=23.97 E-value=2.7e+02 Score=24.65 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033901 36 QLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 36 q~~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
-++++--++-+.||-..|+.+.+...++-.+|..+---+-.+|..++..|=
T Consensus 333 tL~a~L~ti~~~~k~e~~~~na~eI~e~~~~L~~~~~~f~~~~~k~gk~L~ 383 (448)
T COG1322 333 TLMALLNTIANGWKTERQEKNAKEIAEEVGKLYDEFGKFADRLEKLGKHLQ 383 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778899999999999999999999999999999999999998888773
No 194
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.91 E-value=1.1e+02 Score=21.12 Aligned_cols=16 Identities=13% Similarity=0.389 Sum_probs=6.0
Q ss_pred hHHhhHHHHHHhHHHH
Q 033901 60 LQEDTSALKEEQESLT 75 (109)
Q Consensus 60 L~~dkasL~~en~~l~ 75 (109)
|++....|.++.+.|.
T Consensus 84 l~~~~~~l~~~i~~l~ 99 (116)
T cd04769 84 LEDKKQEIRAQITELQ 99 (116)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 195
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=23.44 E-value=1.8e+02 Score=19.84 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=16.2
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHHHHHHH
Q 033901 57 IHDLQEDTSALKEEQESLTNRMNNIKHSL 85 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~~k~~L 85 (109)
++.|+.+...|+++.+.+..-+...+.+|
T Consensus 2 ~~~l~~~~~~L~~~~~~l~~~i~~~~~~l 30 (83)
T PF07061_consen 2 IESLEAEIQELKEQIEQLEKEISELEAEL 30 (83)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555566666665555555555555544
No 196
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=23.41 E-value=2e+02 Score=20.53 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=11.8
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
..++.|+++.+.+.++......+...++.
T Consensus 73 ~~~~rL~~~~~~~ere~~~~~~~~~~l~~ 101 (151)
T PF11559_consen 73 NDVERLKEQLEELERELASAEEKERQLQK 101 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333333333
No 197
>COG3166 PilN Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.36 E-value=3.1e+02 Score=21.74 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=12.5
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHHHH
Q 033901 57 IHDLQEDTSALKEEQESLTNRMNNIK 82 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~~k 82 (109)
+...+....=|.+|+..+..+|-+++
T Consensus 50 ~~~q~~~~~~L~~e~~~l~~~~aei~ 75 (206)
T COG3166 50 IAEQQQRNALLTTEIALLDAEIAEIQ 75 (206)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555554443
No 198
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=23.33 E-value=1.7e+02 Score=24.20 Aligned_cols=45 Identities=29% Similarity=0.428 Sum_probs=37.0
Q ss_pred HHHHHhhccchhhhh-------------hhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 43 ILLLSVRSLGQKYRI-------------HDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 43 ~~~Ls~RSl~Qq~~I-------------~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
-.++.+|.+=|||.+ ..|+.=+++|.+-.+.+...|+.+++++-.
T Consensus 35 st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~ 92 (258)
T PF15397_consen 35 STALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQLEQ 92 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 357788888888875 347777888999999999999999999866
No 199
>PRK14161 heat shock protein GrpE; Provisional
Probab=23.28 E-value=1.5e+02 Score=22.91 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=12.8
Q ss_pred hHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 60 LQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 60 L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
++++.+++..+.+.+....-+||+.+++
T Consensus 17 ~~~~~~~~~~ei~~l~~e~~elkd~~lR 44 (178)
T PRK14161 17 AEEIVETANPEITALKAEIEELKDKLIR 44 (178)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 200
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.89 E-value=1.8e+02 Score=22.35 Aligned_cols=34 Identities=12% Similarity=0.277 Sum_probs=30.4
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
...++|+.+|.+.|.+....+..++-++.++.++
T Consensus 9 ~~~ye~~kaEL~elikkrqe~eetl~nLe~qIY~ 42 (135)
T KOG3856|consen 9 LKSYEDTKAELAELIKKRQELEETLANLERQIYA 42 (135)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999887
No 201
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=22.84 E-value=91 Score=27.02 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=29.1
Q ss_pred HHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHH
Q 033901 41 TGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMN 79 (109)
Q Consensus 41 g~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw 79 (109)
-.++-|.++++- +-+++.|++|.+.|.+|.+.+.+..+
T Consensus 402 ~~IL~m~L~~LT-~~e~~kL~~e~~~l~~ei~~l~~~l~ 439 (445)
T smart00434 402 DAILDMRLRRLT-KLEVEKLEKELKELEKEIEDLEKILA 439 (445)
T ss_pred HHHHHhHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345667777776 56788888888888888888877654
No 202
>PF05643 DUF799: Putative bacterial lipoprotein (DUF799); InterPro: IPR008517 This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=22.77 E-value=69 Score=25.87 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=18.4
Q ss_pred HHHHhhhhccC----CCcchHHHHHHhhccC
Q 033901 82 KHSLLHEASLE----PTGLFASRLRHLFGEE 108 (109)
Q Consensus 82 k~~L~~EA~~d----ss~v~aSRLR~Ifge~ 108 (109)
=+++|++.... -..++..+||.|||.|
T Consensus 77 vde~fkqnGlt~~~~i~~v~~~kL~eiFGAD 107 (215)
T PF05643_consen 77 VDETFKQNGLTDAEDIHAVPPAKLREIFGAD 107 (215)
T ss_pred HHHHHHHcCCCCHHHhccCCHHHHHHHhCCC
Confidence 34555544332 3458899999999987
No 203
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=22.70 E-value=1.8e+02 Score=24.62 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=29.6
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhccC
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLE 92 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~d 92 (109)
.+++.|+.+...|..+++.++..+..+|++|-..-..+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (398)
T PTZ00454 29 KELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVP 66 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 46777888888888888888888888888887765443
No 204
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=22.67 E-value=2.3e+02 Score=18.99 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=13.7
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 57 IHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
.+.|.++...++++-+.+...+..+.++|..
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 205
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.58 E-value=1.6e+02 Score=23.60 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=28.7
Q ss_pred hhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 033901 58 HDLQEDTSALKEEQESLTNRMNNIKHSLLHEAS 90 (109)
Q Consensus 58 ~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~ 90 (109)
..|++..+.-..|++.|.+++....++|+.+|.
T Consensus 121 ~el~eK~~~~~~Everi~~~ieE~v~eLe~~a~ 153 (181)
T COG4345 121 KELEEKLADAMEEVERIEKTIEELVSELESLAN 153 (181)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888889999999999999999999886
No 206
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=22.28 E-value=65 Score=23.37 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=17.1
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 64 TSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 64 kasL~~en~~l~~rMw~~k~~L~~ 87 (109)
.+.+.++-+.|..++.++++++-.
T Consensus 107 e~~~~~~l~~L~~~i~~L~~~~~~ 130 (134)
T PF07047_consen 107 EEELQERLEELEERIEELEEQVEK 130 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888877643
No 207
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=22.25 E-value=2.3e+02 Score=22.34 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=34.7
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhccC-CCc
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASLE-PTG 95 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~d-ss~ 95 (109)
+-++..+..+.+.|+.+.+.+.+++.+..+.+-.|.... .+|
T Consensus 134 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg 176 (301)
T PF14362_consen 134 DAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTG 176 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 456777888899999999999999999999998888773 444
No 208
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.00 E-value=2.2e+02 Score=20.26 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=25.0
Q ss_pred hhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhh
Q 033901 53 QKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHE 88 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~E 88 (109)
+..+|+.|+.+...+..+-+.++.+...+.+.+..|
T Consensus 143 ~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~E 178 (218)
T cd07596 143 KPAKVEELEEELEEAESALEEARKRYEEISERLKEE 178 (218)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335677777777777777777777777776666654
No 209
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=21.90 E-value=2.3e+02 Score=20.06 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=38.0
Q ss_pred cchHHHHHHHHHHHHHHhhccc--hhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 31 KHSFIQLFAMTGILLLSVRSLG--QKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 31 k~~fiq~~Lmg~~~~Ls~RSl~--Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
.+.|...|...-|-++=...+- -+.+++.-+.+......+.+.++..|-++|.+|..
T Consensus 48 ~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ 106 (139)
T PF05615_consen 48 YERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEE 106 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666665555554333332 24566777778888888888888888888888754
No 210
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=21.86 E-value=1.2e+02 Score=19.62 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=14.4
Q ss_pred HhhHHHHHHhHHHHHHHHHH
Q 033901 62 EDTSALKEEQESLTNRMNNI 81 (109)
Q Consensus 62 ~dkasL~~en~~l~~rMw~~ 81 (109)
.|.+.|++|+.+|+.-|-++
T Consensus 11 ydreqlrrelnsLR~~vhel 30 (48)
T PF10845_consen 11 YDREQLRRELNSLRRSVHEL 30 (48)
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 46777788887777777654
No 211
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=21.85 E-value=1.4e+02 Score=26.77 Aligned_cols=29 Identities=28% Similarity=0.412 Sum_probs=24.3
Q ss_pred hhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 59 DLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 59 ~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
-..+||+.|++|.++|.+.|-.-|.+|-.
T Consensus 346 laLEEKaaLrkerd~L~keLeekkreleq 374 (442)
T PF06637_consen 346 LALEEKAALRKERDSLAKELEEKKRELEQ 374 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999999999998887743
No 212
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=21.74 E-value=1.6e+02 Score=24.88 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=17.6
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033901 57 IHDLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
++.++++|..|.++++.+-......++.|-
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk 173 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLK 173 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666555555555543
No 213
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=21.56 E-value=2.5e+02 Score=18.48 Aligned_cols=52 Identities=13% Similarity=0.191 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 033901 38 FAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASL 91 (109)
Q Consensus 38 ~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~ 91 (109)
+++|+|.+.+++++++ .++.+-++.-.-...-..+...+.+.+..++.-...
T Consensus 20 ~~~~~~~~~~l~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (181)
T PF12729_consen 20 LIVGIVGLYSLSQINQ--NVEEIYENNLPSIELLNDIRSNLQRIRRALRRYLLA 71 (181)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444444444444443 334554444444444455566666666655553333
No 214
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=21.53 E-value=1e+02 Score=29.56 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=31.9
Q ss_pred chhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 52 GQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 52 ~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
.||.+|.+++.+-+.+-.+...+.+++++-|.+||.
T Consensus 150 ~e~~~in~~~~~~e~ls~~~~~~ld~I~~~RReLf~ 185 (835)
T COG3264 150 AEKAYINALEGQAEQLTAEVRDILDQILDTRRELLN 185 (835)
T ss_pred hhHHHHHHHhcchhhhCHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888999999999999999999986
No 215
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=21.39 E-value=2e+02 Score=21.78 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=16.3
Q ss_pred hhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 53 QKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
++.+++.++.+...|+.+.+.++.++.+-|+.+.+
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~ 95 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQKRERLEE 95 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433
No 216
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=21.36 E-value=1.7e+02 Score=24.47 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=23.0
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSLL 86 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~ 86 (109)
.+++.++++.+...++-+.++.++.++|..|-
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~ 238 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMKGRLG 238 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777777778888888887753
No 217
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=21.35 E-value=1.8e+02 Score=21.84 Aligned_cols=29 Identities=17% Similarity=0.392 Sum_probs=16.0
Q ss_pred cchhhhhhhhHHhhHHHHHHhHHHHHHHH
Q 033901 51 LGQKYRIHDLQEDTSALKEEQESLTNRMN 79 (109)
Q Consensus 51 l~Qq~~I~~L~~dkasL~~en~~l~~rMw 79 (109)
..+..+|..|+.+...|+.+.+.+...+.
T Consensus 112 ~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ 140 (194)
T PF08614_consen 112 SEKERRLAELEAELAQLEEKIKDLEEELK 140 (194)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777766666655555544443
No 218
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=21.15 E-value=2.1e+02 Score=20.74 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=30.5
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhh
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHE 88 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~E 88 (109)
...|.+|+.+...|.+||..|+--=-++|+-|-..
T Consensus 21 ~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 21 LKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999999999999888888888764
No 219
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=20.97 E-value=1.9e+02 Score=20.97 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=19.1
Q ss_pred hhhhhHHhhHHHHHH--hHHHHHHHHHHHHHHh
Q 033901 56 RIHDLQEDTSALKEE--QESLTNRMNNIKHSLL 86 (109)
Q Consensus 56 ~I~~L~~dkasL~~e--n~~l~~rMw~~k~~L~ 86 (109)
+++.++..++.+.++ |..+..++-.++.+|-
T Consensus 75 ElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le 107 (139)
T PF13935_consen 75 ELERAQQRIAELEQECENEDIALDVQKLRVELE 107 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666655 7777777777766553
No 220
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=20.91 E-value=1.8e+02 Score=27.00 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=37.9
Q ss_pred hhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHh------hhhccCCCcchHHHHHHh
Q 033901 53 QKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLL------HEASLEPTGLFASRLRHL 104 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~------~EA~~dss~v~aSRLR~I 104 (109)
++.|+++||.|..-|+.|-+.--.++..|.+++- .| ...+.-++.+-|.++
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e-~~~~~e~L~~aL~am 599 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKE-SEKDTEVLMSALSAM 599 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 4678899999999999999999999999998772 22 223344555555543
No 221
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=20.87 E-value=3.5e+02 Score=19.86 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=37.5
Q ss_pred HHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 033901 41 TGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLHEASL 91 (109)
Q Consensus 41 g~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~EA~~ 91 (109)
..++-+.++|...+.+..+++-+...+++..+.-..++..=.++|++|..-
T Consensus 16 ~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~~~ 66 (198)
T PF02096_consen 16 LILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKHGV 66 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCC
Confidence 334557888888889999999999998888876555566666667776553
No 222
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.86 E-value=1.3e+02 Score=20.46 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=13.6
Q ss_pred hhhhHHhhHHHHHHhHHHHHHHHHHH
Q 033901 57 IHDLQEDTSALKEEQESLTNRMNNIK 82 (109)
Q Consensus 57 I~~L~~dkasL~~en~~l~~rMw~~k 82 (109)
++-|++..+.|.++.+.|......+.
T Consensus 81 ~~~l~~~~~~l~~~i~~l~~~~~~l~ 106 (113)
T cd01109 81 LELLEEHREELEEQIAELQETLAYLD 106 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544443
No 223
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=20.85 E-value=1.5e+02 Score=24.01 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=25.4
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHhhc
Q 033901 63 DTSALKEEQESLTNRMNNIKHSLLHEASLEPTGLFASRLRHLFG 106 (109)
Q Consensus 63 dkasL~~en~~l~~rMw~~k~~L~~EA~~dss~v~aSRLR~Ifg 106 (109)
+...|++||+.|+...-.+++++...... --.--.|||.+.+
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~--l~~EN~rLr~LL~ 108 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQN--LKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhc
Confidence 55678899999998887776655543210 0123456666654
No 224
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=20.74 E-value=1.6e+02 Score=26.79 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=25.3
Q ss_pred cchhhhhhhhHHhhHHHHHHhHHHHHHHHH
Q 033901 51 LGQKYRIHDLQEDTSALKEEQESLTNRMNN 80 (109)
Q Consensus 51 l~Qq~~I~~L~~dkasL~~en~~l~~rMw~ 80 (109)
..|-.+|++|+++...|+++-++|.+.+-.
T Consensus 21 ~a~a~~i~~L~~ql~aLq~~v~eL~~~laa 50 (514)
T PF11336_consen 21 AATADQIKALQAQLQALQDQVNELRAKLAA 50 (514)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445678999999999999999999988644
No 225
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=20.67 E-value=63 Score=22.25 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhhhhccC
Q 033901 75 TNRMNNIKHSLLHEASLE 92 (109)
Q Consensus 75 ~~rMw~~k~~L~~EA~~d 92 (109)
..++.++|++|+.+|..-
T Consensus 9 ~aTl~~IK~~lw~~A~~~ 26 (78)
T smart00143 9 EATLSTIKHELFKQARKM 26 (78)
T ss_pred cccHHHHHHHHHHHHHhC
Confidence 457899999999999863
No 226
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.67 E-value=1.2e+02 Score=20.26 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=8.2
Q ss_pred hhhhhhhhHHhhHHHHH
Q 033901 53 QKYRIHDLQEDTSALKE 69 (109)
Q Consensus 53 Qq~~I~~L~~dkasL~~ 69 (109)
|+.+|+.|+++....++
T Consensus 57 q~~~i~~Le~~i~~k~~ 73 (83)
T PF07544_consen 57 QEEEIEELEEQIRKKRE 73 (83)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555444433
No 227
>TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2. This model represents a clade of chorismate mutase proteins/domains from gram positive species. The sequence from Enterococcus is fused to the C-terminus of an aparrent acetyltransferase, and the seuence from Clostridium acetobutylicum (but not perfringens) is fused to the N-terminus of shikimate-5-dehydrogenase, another enzyme of the chorismate pathway. All the other members of this clade are mono-functional. Members of this clade from Streptococcus and Lactococcus have been found which represent the sole chorismate mutase domain in their respective genomes which also exhibit evidence of the enzymes of both the upstream and downstream branches of the chorismate pathways.
Probab=20.55 E-value=2.6e+02 Score=18.20 Aligned_cols=31 Identities=16% Similarity=0.333 Sum_probs=28.3
Q ss_pred hhhhhhhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033901 54 KYRIHDLQEDTSALKEEQESLTNRMNNIKHS 84 (109)
Q Consensus 54 q~~I~~L~~dkasL~~en~~l~~rMw~~k~~ 84 (109)
..+|+.+..+.-.|-.+.-.+...+..+|.+
T Consensus 5 R~~Id~iD~~i~~Ll~~R~~~~~~i~~~K~~ 35 (81)
T TIGR01805 5 RKKIDEIDDKLVVLFEERMEVVKEIAAYKKK 35 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999985
No 228
>PRK00295 hypothetical protein; Provisional
Probab=20.52 E-value=2.6e+02 Score=18.24 Aligned_cols=42 Identities=19% Similarity=0.099 Sum_probs=29.7
Q ss_pred HHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 46 LSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 46 Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
|=.|-.-|.+.|++|-+-.....++.+.|...+..+.+.|-.
T Consensus 10 LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 10 LESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677777877777777777777777777777776654
No 229
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=20.51 E-value=1.7e+02 Score=20.34 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=17.3
Q ss_pred HHHhhccchhhhhhhhHHhhHHHHHHhH
Q 033901 45 LLSVRSLGQKYRIHDLQEDTSALKEEQE 72 (109)
Q Consensus 45 ~Ls~RSl~Qq~~I~~L~~dkasL~~en~ 72 (109)
-++.|-..|+.++..|..|.+=+++|++
T Consensus 83 ~l~~~is~le~~i~~L~qeiAl~e~~~~ 110 (115)
T PF10066_consen 83 SLYVRISRLEEKIKRLAQEIALLEAEEK 110 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3455666666677777666666655544
No 230
>PRK11530 hypothetical protein; Provisional
Probab=20.34 E-value=3.6e+02 Score=21.60 Aligned_cols=49 Identities=22% Similarity=0.436 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhhhhHHhhHHHHHHhHHHHHHHHHHHHH
Q 033901 34 FIQLFAMTGILLLSVRSLGQKYRIHDLQEDTSALKEEQESLTNRMNNIKHS 84 (109)
Q Consensus 34 fiq~~Lmg~~~~Ls~RSl~Qq~~I~~L~~dkasL~~en~~l~~rMw~~k~~ 84 (109)
+.-++++++.++|+-= -||.++..|..+...|-+|-..|+..--.+-++
T Consensus 5 ~~~~~~l~~l~lLagC--a~q~ev~ql~~~vs~LNqem~~Lt~qa~aleqQ 53 (183)
T PRK11530 5 YLRLLLLGSLLLLAGC--AQQSEVRQMHNSVSTLNQEMTQLTQQAVAIEQQ 53 (183)
T ss_pred ehHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788887777654 789999999999999999988888877776554
No 231
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=20.20 E-value=1.8e+02 Score=21.69 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=29.0
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
.+|.+|.....+|.+||-.|.---.++|+-|=.
T Consensus 22 ~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 22 AELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 478999999999999999999988888887744
No 232
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=20.16 E-value=1.8e+02 Score=26.53 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=20.3
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHHHHhh
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKHSLLH 87 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~~L~~ 87 (109)
.+.++|...+..|+++++.|..++-.++.+|-+
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~ 182 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQ 182 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666544
No 233
>PF06374 NDUF_C2: NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); InterPro: IPR009423 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase subunit b14.5b proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006120 mitochondrial electron transport, NADH to ubiquinone, 0005743 mitochondrial inner membrane
Probab=20.03 E-value=1.3e+02 Score=22.22 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=21.5
Q ss_pred hHHHHHhhccchH---H--HHHHHHHHHHHHh
Q 033901 22 GFIANAKKHKHSF---I--QLFAMTGILLLSV 48 (109)
Q Consensus 22 g~~a~A~k~k~~f---i--q~~Lmg~~~~Ls~ 48 (109)
+++.|+.+|+--+ | |+++++++..+|.
T Consensus 39 ~ll~N~~~rRP~~~sGihr~ll~~t~g~~~Gy 70 (117)
T PF06374_consen 39 ALLDNAINRRPPLKSGIHRQLLLATIGWFIGY 70 (117)
T ss_pred HHHHHHHhcCCchhhccHHHHHHHHHHHHHHH
Confidence 5678999998888 4 7888888887763
No 234
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=20.01 E-value=2.5e+02 Score=18.03 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=15.9
Q ss_pred hhhhhhHHhhHHHHHHhHHHHHHHHHHHH
Q 033901 55 YRIHDLQEDTSALKEEQESLTNRMNNIKH 83 (109)
Q Consensus 55 ~~I~~L~~dkasL~~en~~l~~rMw~~k~ 83 (109)
.+++.||...+.+.+.-+.+.+++.+++.
T Consensus 20 ~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 20 ERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555544
Done!