Query 033904
Match_columns 109
No_of_seqs 114 out of 1075
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 12:39:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b34_B Protein (small nuclear 100.0 1.4E-29 4.9E-34 173.5 9.3 100 10-109 15-114 (118)
2 4emg_A Probable U6 snRNA-assoc 99.9 1.7E-25 5.7E-30 147.7 9.8 87 19-108 6-92 (93)
3 2fwk_A U6 snRNA-associated SM- 99.9 5.6E-25 1.9E-29 151.3 7.0 90 17-108 23-113 (121)
4 3bw1_A SMX4 protein, U6 snRNA- 99.9 3.5E-24 1.2E-28 142.0 10.5 80 20-108 8-87 (96)
5 1th7_A SnRNP-2, small nuclear 99.9 2.6E-24 8.9E-29 138.3 9.4 77 16-108 3-79 (81)
6 4emk_A U6 snRNA-associated SM- 99.9 6.8E-24 2.3E-28 140.5 11.0 76 18-108 16-91 (94)
7 1i4k_A Putative snRNP SM-like 99.9 5.2E-24 1.8E-28 135.4 9.8 73 20-108 2-74 (77)
8 1h64_1 SnRNP SM-like protein; 99.9 6.2E-24 2.1E-28 134.5 9.9 73 20-108 2-74 (75)
9 1mgq_A SM-like protein; LSM, R 99.9 1.2E-23 4.1E-28 135.9 9.8 71 20-106 13-83 (83)
10 3s6n_E Small nuclear ribonucle 99.9 5.2E-24 1.8E-28 140.5 8.0 77 18-109 12-92 (92)
11 4emk_B U6 snRNA-associated SM- 99.9 6.2E-24 2.1E-28 134.8 7.6 73 20-108 2-74 (75)
12 1i8f_A Putative snRNP SM-like 99.9 2.2E-23 7.7E-28 134.0 10.1 74 18-108 7-80 (81)
13 1ljo_A Archaeal SM-like protei 99.9 2.9E-23 9.8E-28 132.2 9.9 72 21-108 4-76 (77)
14 3s6n_F Small nuclear ribonucle 99.9 3E-23 1E-27 135.1 10.1 73 20-108 4-76 (86)
15 1n9r_A SMF, small nuclear ribo 99.9 2.5E-23 8.6E-28 137.4 8.4 76 18-109 17-93 (93)
16 1d3b_B Protein (small nuclear 99.9 3.3E-23 1.1E-27 135.5 8.0 81 21-107 3-83 (91)
17 1d3b_A Protein (small nuclear 99.9 1.4E-22 4.7E-27 128.8 10.2 71 21-107 4-74 (75)
18 3s6n_G Small nuclear ribonucle 99.9 1.5E-22 5E-27 128.9 8.3 70 22-107 4-73 (76)
19 4emk_C U6 snRNA-associated SM- 99.9 4.2E-22 1.4E-26 135.7 9.3 82 17-107 18-99 (113)
20 4emh_A Probable U6 snRNA-assoc 99.9 5.4E-22 1.9E-26 133.7 8.6 74 20-108 14-87 (105)
21 3pgw_B SM B; protein-RNA compl 99.9 1.3E-21 4.3E-26 147.1 10.3 80 21-106 3-82 (231)
22 1b34_A Protein (small nuclear 99.9 2E-21 7E-26 133.1 9.4 71 22-108 2-72 (119)
23 2y9a_D Small nuclear ribonucle 99.8 2.7E-20 9.1E-25 128.9 9.3 71 21-107 4-74 (126)
24 1m5q_A SMAP3, small nuclear ri 99.8 2.3E-19 8E-24 124.8 8.3 65 24-108 2-66 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.5 1.4E-06 4.9E-11 56.4 8.8 63 20-105 6-69 (86)
26 1u1s_A HFQ protein; SM-like ba 97.5 0.00016 5.3E-09 46.3 4.8 38 25-62 10-47 (82)
27 3ahu_A Protein HFQ; SM-like mo 97.5 0.00012 4E-09 46.5 4.1 38 25-62 14-51 (78)
28 2ylb_A Protein HFQ; RNA-bindin 97.4 0.00015 5.1E-09 45.6 4.1 38 25-62 12-49 (74)
29 1kq1_A HFQ, HOST factor for Q 97.4 0.00019 6.4E-09 45.4 4.6 39 25-63 10-48 (77)
30 3sb2_A Protein HFQ; SM-like, R 97.4 0.00023 7.8E-09 45.3 4.8 37 25-61 11-47 (79)
31 2y90_A Protein HFQ; RNA-bindin 97.3 0.00041 1.4E-08 46.2 4.8 39 25-63 12-50 (104)
32 2qtx_A Uncharacterized protein 97.1 0.00051 1.7E-08 42.8 4.1 38 26-63 17-54 (71)
33 3hfo_A SSR3341 protein; HFQ, S 96.4 0.0043 1.5E-07 38.5 4.4 40 23-62 10-49 (70)
34 3hfn_A ASL2047 protein; HFQ, S 96.1 0.0084 2.9E-07 37.3 4.3 40 23-62 12-51 (72)
35 1ycy_A Conserved hypothetical 94.4 0.1 3.5E-06 31.8 5.2 41 26-69 10-50 (71)
36 1y96_B Gemin7, SIP3, GEM-assoc 92.9 1 3.5E-05 28.7 8.2 64 24-108 21-85 (85)
37 4a53_A EDC3; RNA binding prote 91.9 0.28 9.7E-06 33.3 4.9 38 27-67 7-46 (125)
38 2vxe_A CG10686-PA; EDC3, CAR-1 91.3 1.9 6.4E-05 27.6 9.8 70 30-106 11-81 (88)
39 2fb7_A SM-like protein, LSM-14 90.1 2.2 7.4E-05 27.7 7.6 76 24-106 11-87 (95)
40 1ib8_A Conserved protein SP14. 85.6 0.93 3.2E-05 31.6 4.0 39 21-62 90-135 (164)
41 2vc8_A Enhancer of mRNA-decapp 85.3 1.8 6.3E-05 27.4 4.9 37 28-66 5-43 (84)
42 2e12_A SM-like motif, hypothet 83.6 1.7 6E-05 28.0 4.3 28 24-51 18-45 (101)
43 3rux_A BIRA bifunctional prote 81.6 2.4 8.1E-05 31.6 5.1 32 34-65 224-255 (270)
44 2eay_A Biotin [acetyl-COA-carb 65.9 8.5 0.00029 27.7 4.5 31 33-65 187-217 (233)
45 2ej9_A Putative biotin ligase; 55.1 18 0.00062 26.0 4.7 40 24-64 178-221 (237)
46 2dxu_A Biotin--[acetyl-COA-car 54.4 10 0.00034 27.5 3.2 30 33-64 188-217 (235)
47 1bia_A BIRA bifunctional prote 51.4 34 0.0012 25.5 5.9 32 33-65 272-303 (321)
48 2xk0_A Polycomb protein PCL; t 50.7 36 0.0012 20.6 4.7 38 33-70 18-56 (69)
49 1ky9_A Protease DO, DEGP, HTRA 48.5 26 0.00089 27.6 4.9 33 34-66 110-142 (448)
50 4a8c_A Periplasmic PH-dependen 48.1 30 0.001 27.0 5.2 33 34-66 87-119 (436)
51 3rkx_A Biotin-[acetyl-COA-carb 46.7 25 0.00085 26.6 4.4 30 34-64 279-308 (323)
52 2rm4_A CG6311-PB, DM EDC3; enh 46.6 57 0.0019 21.1 5.6 38 28-68 8-46 (103)
53 3bfm_A Biotin protein ligase-l 43.1 51 0.0017 23.4 5.4 28 33-65 193-220 (235)
54 1x4r_A PARP14 protein; WWE dom 42.5 1.7 5.6E-05 28.4 -2.4 19 48-66 34-52 (99)
55 1nvp_D Transcription initiatio 41.7 27 0.00093 22.8 3.4 27 42-68 52-81 (108)
56 4hcz_A PHD finger protein 1; p 41.2 46 0.0016 19.5 4.0 38 33-70 6-46 (58)
57 3stj_A Protease DEGQ; serine p 40.6 40 0.0014 25.5 4.7 32 34-65 87-118 (345)
58 1te0_A Protease DEGS; two doma 39.3 55 0.0019 24.1 5.3 33 34-66 65-97 (318)
59 3fb9_A Uncharacterized protein 38.6 38 0.0013 21.5 3.6 26 26-53 19-48 (90)
60 1lcy_A HTRA2 serine protease; 38.5 57 0.002 24.2 5.3 33 34-66 70-102 (325)
61 3lgi_A Protease DEGS; stress-s 37.9 65 0.0022 22.6 5.3 33 34-66 76-108 (237)
62 1nh2_D Transcription initiatio 37.5 34 0.0011 22.8 3.4 30 41-70 55-87 (121)
63 1sg5_A ORF, hypothetical prote 37.3 21 0.00073 22.2 2.3 27 24-50 15-41 (86)
64 3pv2_A DEGQ; trypsin fold, PDZ 35.5 40 0.0014 26.5 4.1 32 34-65 101-132 (451)
65 3sti_A Protease DEGQ; serine p 33.6 50 0.0017 23.7 4.1 32 34-65 87-118 (245)
66 3tjo_A Serine protease HTRA1; 31.1 70 0.0024 22.4 4.5 33 34-66 86-118 (231)
67 3qo6_A Protease DO-like 1, chl 29.3 90 0.0031 23.3 5.1 33 34-66 76-108 (348)
68 1y8t_A Hypothetical protein RV 29.2 59 0.002 23.9 4.0 32 35-66 64-95 (324)
69 3num_A Serine protease HTRA1; 24.2 1.2E+02 0.004 22.4 4.8 33 34-66 69-101 (332)
70 4fln_A Protease DO-like 2, chl 22.1 83 0.0028 25.7 3.8 32 34-65 96-128 (539)
71 3tee_A Flagella basal BODY P-r 20.0 62 0.0021 23.2 2.4 20 34-53 171-190 (219)
No 1
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.96 E-value=1.4e-29 Score=173.46 Aligned_cols=100 Identities=85% Similarity=1.277 Sum_probs=66.8
Q ss_pred cCccccccccCCCcHHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeeeeeEEeeeccCCCCCCcccccccccee
Q 033904 10 TGGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDR 89 (109)
Q Consensus 10 ~~~~~e~~~~~~~Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r 89 (109)
+.+++|++++..+|+++|+.++..+++|.|+|++|+.|.|+|+|||+||||+|+||+|++...++++++....+....+|
T Consensus 15 ~~~~~e~~~~~~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r 94 (118)
T 1b34_B 15 ELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDR 94 (118)
T ss_dssp -----------CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CE
T ss_pred hhhhhhhhhcccChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEeccccccccccccccccccc
Confidence 66889999999999999999996569999999999999999999999999999999999865443322211112233467
Q ss_pred eeceEEEeCCcEEEEEeCCC
Q 033904 90 FISKMFLRGDSVIIVLRNPK 109 (109)
Q Consensus 90 ~lg~i~IRGdnVv~I~~~p~ 109 (109)
++|.+||||+||++|+++|+
T Consensus 95 ~lg~v~IRG~nVv~I~~~~~ 114 (118)
T 1b34_B 95 YISKMFLRGDSVIVVLRNPL 114 (118)
T ss_dssp EEEEEEECGGGEEEEEECCC
T ss_pred CcCeEEEcCCEEEEEEeCch
Confidence 89999999999999999875
No 2
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.7e-25 Score=147.72 Aligned_cols=87 Identities=29% Similarity=0.472 Sum_probs=66.0
Q ss_pred cCCCcHHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccccccccceeeeceEEEeC
Q 033904 19 FNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 98 (109)
Q Consensus 19 ~~~~Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRG 98 (109)
....|+++|+.++ +++|+|.|++|+.|.|+|.|||+||||+|+||+|++...+++++..+ ......+|.+|.+||||
T Consensus 6 ~~~~Pl~lL~~~~--~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~-~~~~~~~r~lG~v~iRG 82 (93)
T 4emg_A 6 AVAEPLDLVRLSL--DEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKD-KALKTIRKHYEMLFVRG 82 (93)
T ss_dssp ---CTTHHHHTTT--TSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC---------------CEEEEEEEEEECG
T ss_pred ccCCCHHHHHHhC--CCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCcccc-ccccccEeEeceEEECC
Confidence 3569999999999 99999999999999999999999999999999999875444332100 00112358999999999
Q ss_pred CcEEEEEeCC
Q 033904 99 DSVIIVLRNP 108 (109)
Q Consensus 99 dnVv~I~~~p 108 (109)
+||++|++.-
T Consensus 83 ~nVv~I~p~~ 92 (93)
T 4emg_A 83 DSVILIAPPR 92 (93)
T ss_dssp GGEEEEECCC
T ss_pred CeEEEEEecC
Confidence 9999999864
No 3
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.91 E-value=5.6e-25 Score=151.26 Aligned_cols=90 Identities=19% Similarity=0.296 Sum_probs=67.9
Q ss_pred cccCCCcHHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccc-cccccceeeeceEE
Q 033904 17 EEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKK-ALPVNKDRFISKMF 95 (109)
Q Consensus 17 ~~~~~~Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~-~~~~~~~r~lg~i~ 95 (109)
......|+++|.+++ +++|.|.|++|+.|.|+|+|||+||||+|+||+|++...+.+...... .+.....+.+|.+|
T Consensus 23 ~~~~~~Pl~lL~~~l--~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~ 100 (121)
T 2fwk_A 23 GGNIILPLALIDKCI--GNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETIL 100 (121)
T ss_dssp -CCCCCHHHHHHHTB--TSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEE
T ss_pred cccccCcHHHHHHHc--CCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEE
Confidence 345679999999999 999999999999999999999999999999999998532111000000 00011257899999
Q ss_pred EeCCcEEEEEeCC
Q 033904 96 LRGDSVIIVLRNP 108 (109)
Q Consensus 96 IRGdnVv~I~~~p 108 (109)
|||++|++|++.+
T Consensus 101 IRG~nVv~I~~~~ 113 (121)
T 2fwk_A 101 LSGNNVAMLVPGG 113 (121)
T ss_dssp ECGGGEEEEESSS
T ss_pred ECCCEEEEEEecC
Confidence 9999999999865
No 4
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.5e-24 Score=142.00 Aligned_cols=80 Identities=30% Similarity=0.568 Sum_probs=68.8
Q ss_pred CCCcHHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccccccccceeeeceEEEeCC
Q 033904 20 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 99 (109)
Q Consensus 20 ~~~Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd 99 (109)
...|+++|.+++ +++|+|.|++||.|.|+|+|||+||||+|+||+|++...+++.. ....|.+|.++|||+
T Consensus 8 ~~~p~~~L~~~i--~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~-------~~~~r~lG~v~IRG~ 78 (96)
T 3bw1_A 8 METPLDLLKLNL--DERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEEL-------SESERRCEMVFIRGD 78 (96)
T ss_dssp CCCHHHHHGGGT--TSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCC-------CEEEEEEEEEEECGG
T ss_pred hhhHHHHHHHHC--CCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEecccccccc-------CcceeEcCEEEECCC
Confidence 468999999999 99999999999999999999999999999999999864322110 123578999999999
Q ss_pred cEEEEEeCC
Q 033904 100 SVIIVLRNP 108 (109)
Q Consensus 100 nVv~I~~~p 108 (109)
||++|++.+
T Consensus 79 nVv~I~~~d 87 (96)
T 3bw1_A 79 TVTLISTPS 87 (96)
T ss_dssp GEEEEECCC
T ss_pred EEEEEEecC
Confidence 999999876
No 5
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.91 E-value=2.6e-24 Score=138.27 Aligned_cols=77 Identities=29% Similarity=0.509 Sum_probs=68.1
Q ss_pred ccccCCCcHHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccccccccceeeeceEE
Q 033904 16 EEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMF 95 (109)
Q Consensus 16 ~~~~~~~Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~ 95 (109)
++..+..|+++|++++ +++|+|+|++|+.|.|+|.|||+||||+|+||+|++.. + ..+.+|.++
T Consensus 3 m~~~~~~P~~~L~~~~--~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~----~----------~~~~lg~v~ 66 (81)
T 1th7_A 3 MNFLAETAHKVLAESL--NNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD----G----------SGKKLGTIV 66 (81)
T ss_dssp CCTTCHHHHHHHHHHT--TSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSS----S----------CEEEEEEEE
T ss_pred ccccccchHHHHHHhC--CCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecC----C----------ceeECCEEE
Confidence 4556779999999999 99999999999999999999999999999999998741 1 147899999
Q ss_pred EeCCcEEEEEeCC
Q 033904 96 LRGDSVIIVLRNP 108 (109)
Q Consensus 96 IRGdnVv~I~~~p 108 (109)
|||+||++|++.+
T Consensus 67 iRG~~I~~i~~~~ 79 (81)
T 1th7_A 67 IRGDNVILISPLQ 79 (81)
T ss_dssp ECGGGEEEEEEC-
T ss_pred ECCCEEEEEEecC
Confidence 9999999999864
No 6
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.91 E-value=6.8e-24 Score=140.51 Aligned_cols=76 Identities=20% Similarity=0.350 Sum_probs=65.0
Q ss_pred ccCCCcHHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccccccccceeeeceEEEe
Q 033904 18 EFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 97 (109)
Q Consensus 18 ~~~~~Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IR 97 (109)
.....|+++|.+++ +++|.|.|++|+.|.|+|+|||+||||+|+||+|++.. ++ ..+.+|.++||
T Consensus 16 ~~~~~Pl~lL~~~l--~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~----~~---------~~~~lg~v~IR 80 (94)
T 4emk_A 16 SMTILPLELIDKCI--GSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTV----TG---------VTEKHSEMLLN 80 (94)
T ss_dssp ----CHHHHHHHTT--TSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETT----TC---------CEEEEEEEEEC
T ss_pred cccccCHHHHHHHc--CCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecC----CC---------cEeEcCEEEEc
Confidence 44679999999999 99999999999999999999999999999999998731 11 14689999999
Q ss_pred CCcEEEEEeCC
Q 033904 98 GDSVIIVLRNP 108 (109)
Q Consensus 98 GdnVv~I~~~p 108 (109)
|+||++|++..
T Consensus 81 G~nI~~i~p~~ 91 (94)
T 4emk_A 81 GNGMCMLIPGG 91 (94)
T ss_dssp STTEEEEEECC
T ss_pred CCEEEEEEeCC
Confidence 99999999864
No 7
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.91 E-value=5.2e-24 Score=135.38 Aligned_cols=73 Identities=27% Similarity=0.503 Sum_probs=65.5
Q ss_pred CCCcHHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccccccccceeeeceEEEeCC
Q 033904 20 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 99 (109)
Q Consensus 20 ~~~Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd 99 (109)
+..|+++|++++ +++|+|+|++|+.|.|+|.|||+||||+|+||+|++.. + ..+.+|.++|||+
T Consensus 2 ~~~P~~~L~~~~--~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~----~----------~~~~lg~v~iRG~ 65 (77)
T 1i4k_A 2 PPRPLDVLNRSL--KSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNG----E----------VVRKVGSVVIRGD 65 (77)
T ss_dssp -CCHHHHHHTTT--TSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETT----E----------EEEEEEEEEECGG
T ss_pred CccHHHHHHHhC--CCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecC----C----------cEeECCEEEECCC
Confidence 358999999999 99999999999999999999999999999999998741 1 2478999999999
Q ss_pred cEEEEEeCC
Q 033904 100 SVIIVLRNP 108 (109)
Q Consensus 100 nVv~I~~~p 108 (109)
||++|++.+
T Consensus 66 ~I~~i~~~d 74 (77)
T 1i4k_A 66 TVVFVSPAP 74 (77)
T ss_dssp GEEEEEECC
T ss_pred EEEEEEeCC
Confidence 999999864
No 8
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.91 E-value=6.2e-24 Score=134.55 Aligned_cols=73 Identities=26% Similarity=0.452 Sum_probs=64.9
Q ss_pred CCCcHHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccccccccceeeeceEEEeCC
Q 033904 20 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 99 (109)
Q Consensus 20 ~~~Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd 99 (109)
+..|+++|++++ +++|+|+|++|+.|.|+|.|||+||||+|+||+|++. +. ..+.+|.++|||+
T Consensus 2 ~~~P~~~L~~~~--~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~-----~~---------~~~~lg~v~iRG~ 65 (75)
T 1h64_1 2 AERPLDVIHRSL--DKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQD-----GE---------VVKRYGKIVIRGD 65 (75)
T ss_dssp -CCHHHHHHTTT--TSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEET-----TE---------EEEEEEEEEECGG
T ss_pred CchHHHHHHHHC--CCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEee-----CC---------ceeECCEEEECCC
Confidence 358999999999 9999999999999999999999999999999999874 11 2478999999999
Q ss_pred cEEEEEeCC
Q 033904 100 SVIIVLRNP 108 (109)
Q Consensus 100 nVv~I~~~p 108 (109)
||++|++..
T Consensus 66 ~I~~i~~~~ 74 (75)
T 1h64_1 66 NVLAISPTE 74 (75)
T ss_dssp GEEEEEEC-
T ss_pred EEEEEEeCC
Confidence 999999864
No 9
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.90 E-value=1.2e-23 Score=135.89 Aligned_cols=71 Identities=27% Similarity=0.526 Sum_probs=64.7
Q ss_pred CCCcHHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccccccccceeeeceEEEeCC
Q 033904 20 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 99 (109)
Q Consensus 20 ~~~Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd 99 (109)
...|+++|++++ +++|+|+|++|+.|.|+|.|||+||||+|+||+|++.. . ..+.+|.++|||+
T Consensus 13 ~~~P~~~L~~~~--~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-----~---------~~~~lg~v~IRG~ 76 (83)
T 1mgq_A 13 VQRPLDALGNSL--NSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDG-----E---------VTRRLGTVLIRGD 76 (83)
T ss_dssp TTCTTHHHHHTT--TSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETT-----E---------EEEEEEEEEECGG
T ss_pred CcChHHHHHHhC--CCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecC-----C---------cccCCCEEEECCC
Confidence 579999999999 99999999999999999999999999999999998741 1 2478999999999
Q ss_pred cEEEEEe
Q 033904 100 SVIIVLR 106 (109)
Q Consensus 100 nVv~I~~ 106 (109)
||++|++
T Consensus 77 ~I~~i~p 83 (83)
T 1mgq_A 77 NIVYISP 83 (83)
T ss_dssp GEEEEEC
T ss_pred EEEEEEC
Confidence 9999985
No 10
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.90 E-value=5.2e-24 Score=140.50 Aligned_cols=77 Identities=18% Similarity=0.432 Sum_probs=65.5
Q ss_pred ccCCCcHHHHHHhhhCCcEEEEEe----cCCeEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccccccccceeeece
Q 033904 18 EFNTGPLSVLMMSVKNNTQVLINC----RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISK 93 (109)
Q Consensus 18 ~~~~~Pl~~L~~~~~~~krV~V~L----r~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~ 93 (109)
+....|+++|.+++ +++|+|.+ ++|++|.|+|.|||+||||+|+||+|+... ++ ..+.+|.
T Consensus 12 ~~m~~Pl~lL~~~l--~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~----~~---------~~~~lg~ 76 (92)
T 3s6n_E 12 KVMVQPINLIFRYL--QNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSK----TK---------SRKQLGR 76 (92)
T ss_dssp --CCCHHHHHHHHH--HHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSS----SC---------CEEEEEE
T ss_pred eeccCCHHHHHHHh--CCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecC----CC---------ceeEcCe
Confidence 45789999999999 88888888 999999999999999999999999998742 11 2468999
Q ss_pred EEEeCCcEEEEEeCCC
Q 033904 94 MFLRGDSVIIVLRNPK 109 (109)
Q Consensus 94 i~IRGdnVv~I~~~p~ 109 (109)
++|||+||++|++.++
T Consensus 77 v~iRG~nV~~i~~~~~ 92 (92)
T 3s6n_E 77 IMLKGDNITLLQSVSN 92 (92)
T ss_dssp EEECGGGEEEEEEC--
T ss_pred EEEeCCEEEEEEeCCC
Confidence 9999999999999875
No 11
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.90 E-value=6.2e-24 Score=134.82 Aligned_cols=73 Identities=26% Similarity=0.395 Sum_probs=64.9
Q ss_pred CCCcHHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccccccccceeeeceEEEeCC
Q 033904 20 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 99 (109)
Q Consensus 20 ~~~Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd 99 (109)
+..|+++|++++ +++|.|+|++|+.|.|+|.|||+||||+|+||+|+.. ++ ..+.+|.++|||+
T Consensus 2 ~~~P~~~L~~~~--~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~-----~~---------~~~~lg~v~iRG~ 65 (75)
T 4emk_B 2 DSSPNEFLNKVI--GKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVN-----GK---------KTNVYGDAFIRGN 65 (75)
T ss_dssp CSHHHHHHHHTT--TSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEET-----TE---------EEEEEEEEEEEGG
T ss_pred CCchHHHHHHhC--CCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEec-----CC---------cccEecEEEEcCC
Confidence 367999999999 9999999999999999999999999999999999863 21 1367999999999
Q ss_pred cEEEEEeCC
Q 033904 100 SVIIVLRNP 108 (109)
Q Consensus 100 nVv~I~~~p 108 (109)
||++|++..
T Consensus 66 ~I~~i~~~~ 74 (75)
T 4emk_B 66 NVLYVSALD 74 (75)
T ss_dssp GSSEEEEC-
T ss_pred eEEEEEecC
Confidence 999999863
No 12
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.90 E-value=2.2e-23 Score=133.98 Aligned_cols=74 Identities=27% Similarity=0.445 Sum_probs=64.8
Q ss_pred ccCCCcHHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccccccccceeeeceEEEe
Q 033904 18 EFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 97 (109)
Q Consensus 18 ~~~~~Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IR 97 (109)
+....|+++|++++ +++|+|+|++|+.|.|+|+|||+||||+|+||+|+ . +. ..+.+|.++||
T Consensus 7 ~~~~~P~~~L~~~~--~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~-----~~---------~~~~lg~v~iR 69 (81)
T 1i8f_A 7 KCFATLGATLQDSI--GKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-I-----DG---------NVYKRGTMVVR 69 (81)
T ss_dssp ---CCHHHHHHTTT--TSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-E-----TT---------EEEEEEEEEEC
T ss_pred ccccchHHHHHHHC--CCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-c-----CC---------cccCCCEEEEC
Confidence 34679999999999 99999999999999999999999999999999998 3 11 24789999999
Q ss_pred CCcEEEEEeCC
Q 033904 98 GDSVIIVLRNP 108 (109)
Q Consensus 98 GdnVv~I~~~p 108 (109)
|+||++|++..
T Consensus 70 G~~I~~i~~~d 80 (81)
T 1i8f_A 70 GENVLFISPVP 80 (81)
T ss_dssp GGGEEEEEECC
T ss_pred CCEEEEEEeCC
Confidence 99999999864
No 13
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.90 E-value=2.9e-23 Score=132.15 Aligned_cols=72 Identities=21% Similarity=0.367 Sum_probs=64.7
Q ss_pred CCcHHHHHHhhhCCcEEEEEecCC-eEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccccccccceeeeceEEEeCC
Q 033904 21 TGPLSVLMMSVKNNTQVLINCRNN-KKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 99 (109)
Q Consensus 21 ~~Pl~~L~~~~~~~krV~V~Lr~g-r~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd 99 (109)
..|+++|++++ +++|+|+|++| +.|.|+|.|||+||||+|+||+|++. ++ ..+.+|.++|||+
T Consensus 4 ~~P~~~L~~~~--~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~-----~~---------~~~~lg~v~iRG~ 67 (77)
T 1ljo_A 4 VLPNQMVKSMV--GKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKG-----EE---------KVRSLGEIVLRGN 67 (77)
T ss_dssp CCHHHHHHHTT--TSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEET-----TE---------EEEEEEEEEECGG
T ss_pred cchHHHHHHHC--CCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEec-----CC---------cEeECCeEEEeCC
Confidence 58999999999 99999999999 99999999999999999999999873 11 2478999999999
Q ss_pred cEEEEEeCC
Q 033904 100 SVIIVLRNP 108 (109)
Q Consensus 100 nVv~I~~~p 108 (109)
||++|++..
T Consensus 68 nI~~i~~~d 76 (77)
T 1ljo_A 68 NVVLIQPQE 76 (77)
T ss_dssp GEEEEEEC-
T ss_pred eEEEEEeCC
Confidence 999999753
No 14
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.90 E-value=3e-23 Score=135.11 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=65.6
Q ss_pred CCCcHHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccccccccceeeeceEEEeCC
Q 033904 20 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 99 (109)
Q Consensus 20 ~~~Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd 99 (109)
...|+++|++++ +++|.|+|++|+.|.|+|.|||+||||+|+||+|+.. ++ ..+.+|.++|||+
T Consensus 4 ~~~P~~~L~~~~--~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~-----g~---------~~~~lg~v~IRG~ 67 (86)
T 3s6n_F 4 PLNPKPFLNGLT--GKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYID-----GA---------LSGHLGEVLIRCN 67 (86)
T ss_dssp CCCHHHHHHHHT--TSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEET-----TE---------EEEEESSEEECGG
T ss_pred CcCcHHHHHHhC--CCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcC-----Cc---------eeeEccEEEEeCC
Confidence 468999999999 9999999999999999999999999999999999752 21 1367999999999
Q ss_pred cEEEEEeCC
Q 033904 100 SVIIVLRNP 108 (109)
Q Consensus 100 nVv~I~~~p 108 (109)
||++|++.+
T Consensus 68 nI~~i~~~d 76 (86)
T 3s6n_F 68 NVLYIRGVE 76 (86)
T ss_dssp GEEEEEECC
T ss_pred eEEEEEeCC
Confidence 999999865
No 15
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.89 E-value=2.5e-23 Score=137.37 Aligned_cols=76 Identities=21% Similarity=0.303 Sum_probs=60.7
Q ss_pred ccCCCcHHHHHHhhhCCcEEEEEecCC-eEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccccccccceeeeceEEE
Q 033904 18 EFNTGPLSVLMMSVKNNTQVLINCRNN-KKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 96 (109)
Q Consensus 18 ~~~~~Pl~~L~~~~~~~krV~V~Lr~g-r~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~I 96 (109)
.....|+++|++++ +++|.|+|++| +.|.|+|.|||+||||+|+||+|++. ++ ..+.+|.++|
T Consensus 17 ~~~~~P~~~L~~~i--~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~-----~~---------~~~~lg~v~I 80 (93)
T 1n9r_A 17 MQPVNPKPFLKGLV--NHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVA-----GV---------SHGTLGEIFI 80 (93)
T ss_dssp ---------CGGGT--TSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEET-----TE---------EEEECCSEEE
T ss_pred cccCChHHHHHHhC--CCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcC-----CC---------eEeEcCEEEE
Confidence 34678999999999 99999999999 99999999999999999999999863 21 1367999999
Q ss_pred eCCcEEEEEeCCC
Q 033904 97 RGDSVIIVLRNPK 109 (109)
Q Consensus 97 RGdnVv~I~~~p~ 109 (109)
||+||++|++.++
T Consensus 81 RG~nI~~I~~~~~ 93 (93)
T 1n9r_A 81 RCNNVLYIRELPN 93 (93)
T ss_dssp CGGGEEEEEECCC
T ss_pred cCCeEEEEEeCCC
Confidence 9999999998864
No 16
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.89 E-value=3.3e-23 Score=135.50 Aligned_cols=81 Identities=21% Similarity=0.429 Sum_probs=63.2
Q ss_pred CCcHHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccccccccceeeeceEEEeCCc
Q 033904 21 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 100 (109)
Q Consensus 21 ~~Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGdn 100 (109)
.+|-++|.+++ +++|+|.|++|+.|.|+|+|||+||||+|+||+|++...+.+++.. .....+.+|.++|||+|
T Consensus 3 ~~~~~~L~~~~--~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~----~~~~~~~lg~v~iRG~~ 76 (91)
T 1d3b_B 3 VGKSSKMLQHI--DYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA----EREEKRVLGLVLLRGEN 76 (91)
T ss_dssp ----CCCGGGT--TSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSC----CEEEEEEEEEEEECGGG
T ss_pred CChhHHHHHHc--CCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccc----cCccEeECCEEEECCCe
Confidence 46777899999 9999999999999999999999999999999999874322211100 01235889999999999
Q ss_pred EEEEEeC
Q 033904 101 VIIVLRN 107 (109)
Q Consensus 101 Vv~I~~~ 107 (109)
|++|+..
T Consensus 77 I~~i~~~ 83 (91)
T 1d3b_B 77 LVSMTVE 83 (91)
T ss_dssp EEEEEEE
T ss_pred EEEEEcC
Confidence 9999864
No 17
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.89 E-value=1.4e-22 Score=128.83 Aligned_cols=71 Identities=14% Similarity=0.272 Sum_probs=63.9
Q ss_pred CCcHHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccccccccceeeeceEEEeCCc
Q 033904 21 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 100 (109)
Q Consensus 21 ~~Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGdn 100 (109)
..|+++|++++ |++|.|+|++|+.|+|+|.|||+|||++|+||+|+.. +++ .+.+|.++|||+|
T Consensus 4 ~~P~~~L~~~~--g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~----~~~----------~~~lg~v~IRG~n 67 (75)
T 1d3b_A 4 GVPIKVLHEAE--GHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYR----DGR----------VAQLEQVYIRGCK 67 (75)
T ss_dssp CCHHHHHHHTT--TSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECT----TSC----------EEEEEEEEECGGG
T ss_pred cCHHHHHHHhC--CCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECC----CCc----------EEEcCeEEEeCCE
Confidence 57999999999 9999999999999999999999999999999999752 221 3679999999999
Q ss_pred EEEEEeC
Q 033904 101 VIIVLRN 107 (109)
Q Consensus 101 Vv~I~~~ 107 (109)
|.+|+.+
T Consensus 68 I~~i~lP 74 (75)
T 1d3b_A 68 IRFLILP 74 (75)
T ss_dssp EEEEEEC
T ss_pred EEEEEcC
Confidence 9999875
No 18
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.88 E-value=1.5e-22 Score=128.86 Aligned_cols=70 Identities=23% Similarity=0.395 Sum_probs=52.2
Q ss_pred CcHHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccccccccceeeeceEEEeCCcE
Q 033904 22 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 101 (109)
Q Consensus 22 ~Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGdnV 101 (109)
.|-++|++++ +++|+|.|++|+.|.|+|.|||+||||+|+||+|++.. ++ .+.+|.++|||+||
T Consensus 4 ~~~~~L~~~~--~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~----~~----------~~~lg~v~iRG~~I 67 (76)
T 3s6n_G 4 AHPPELKKFM--DKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATS----GQ----------QNNIGMVVIRGNSI 67 (76)
T ss_dssp ------------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC------------------CBSSEEECSSSE
T ss_pred cchHHHHHhC--CCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccC----Cc----------EeEcCEEEECCCeE
Confidence 4667999999 99999999999999999999999999999999998642 11 36799999999999
Q ss_pred EEEEeC
Q 033904 102 IIVLRN 107 (109)
Q Consensus 102 v~I~~~ 107 (109)
++|++.
T Consensus 68 ~~i~~~ 73 (76)
T 3s6n_G 68 IMLEAL 73 (76)
T ss_dssp EEEEC-
T ss_pred EEEEec
Confidence 999975
No 19
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.87 E-value=4.2e-22 Score=135.71 Aligned_cols=82 Identities=16% Similarity=0.264 Sum_probs=55.6
Q ss_pred cccCCCcHHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccccccccceeeeceEEE
Q 033904 17 EEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFL 96 (109)
Q Consensus 17 ~~~~~~Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~I 96 (109)
++....|+..|.+++ +++|+|.|++||.|.|+|+|||+||||+|+||+|++... ++. ......|.+|.++|
T Consensus 18 ~~~kke~i~~L~~~l--~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~--~~~-----~~~~~~r~lG~v~I 88 (113)
T 4emk_C 18 ERPRKESILDLSRYQ--DQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNP--EDG-----KLTGAIRKLGLVVV 88 (113)
T ss_dssp --------------C--CSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC----------------CCEEEEEEEEE
T ss_pred cCCccchHHHHHHHc--CCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCC--CCc-----ccccceeEccEEEE
Confidence 334567888999999 999999999999999999999999999999999998531 110 01123588999999
Q ss_pred eCCcEEEEEeC
Q 033904 97 RGDSVIIVLRN 107 (109)
Q Consensus 97 RGdnVv~I~~~ 107 (109)
||+||++|++.
T Consensus 89 RG~nIv~I~~~ 99 (113)
T 4emk_C 89 RGTTLVLIAPM 99 (113)
T ss_dssp CTTTEEEEEEC
T ss_pred CCCeEEEEEec
Confidence 99999999975
No 20
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.87 E-value=5.4e-22 Score=133.66 Aligned_cols=74 Identities=19% Similarity=0.324 Sum_probs=53.7
Q ss_pred CCCcHHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccccccccceeeeceEEEeCC
Q 033904 20 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 99 (109)
Q Consensus 20 ~~~Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGd 99 (109)
...|+.+|++++ +++|.|+|++|+.|+|+|.|||+||||+|+||+|+.. +++ ..+.+|.++|||+
T Consensus 14 ~~~p~~lL~~~i--gk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~----dg~---------~~~~lg~v~IRG~ 78 (105)
T 4emh_A 14 PMLPLTLLNATQ--GRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMP----DGD---------KFFRLPECYIRGN 78 (105)
T ss_dssp --------------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECT----TSC---------EEEEEEEEEECGG
T ss_pred CCcHHHHHHHhC--CCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEcc----CCc---------eeeEcCeEEEeCC
Confidence 357999999999 9999999999999999999999999999999999753 232 1367999999999
Q ss_pred cEEEEEeCC
Q 033904 100 SVIIVLRNP 108 (109)
Q Consensus 100 nVv~I~~~p 108 (109)
||++|+.++
T Consensus 79 nI~~I~~pd 87 (105)
T 4emh_A 79 NIKYLRIQD 87 (105)
T ss_dssp GEEEEEC--
T ss_pred eEEEEecCH
Confidence 999998754
No 21
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.86 E-value=1.3e-21 Score=147.06 Aligned_cols=80 Identities=21% Similarity=0.431 Sum_probs=66.5
Q ss_pred CCcHHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccccccccceeeeceEEEeCCc
Q 033904 21 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 100 (109)
Q Consensus 21 ~~Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGdn 100 (109)
.++-..|.+++ +++|+|+|+|||+|.|+|++||+||||+|+||+|++...+++++.. ...++|++|++||||||
T Consensus 3 v~k~~kL~klI--dKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~----~~~~~R~LGlV~IRGdn 76 (231)
T 3pgw_B 3 VGKSSKMLQHI--DYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQA----EREEKRVLGLVLLRGEN 76 (231)
T ss_pred cCchHHHHHhc--CCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccc----cccceeEeceEEECCCc
Confidence 46778999999 9999999999999999999999999999999999985333322111 12346899999999999
Q ss_pred EEEEEe
Q 033904 101 VIIVLR 106 (109)
Q Consensus 101 Vv~I~~ 106 (109)
|++|+.
T Consensus 77 IV~Isv 82 (231)
T 3pgw_B 77 LVSMTV 82 (231)
T ss_pred EEEEEe
Confidence 999984
No 22
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.86 E-value=2e-21 Score=133.14 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=63.5
Q ss_pred CcHHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccccccccceeeeceEEEeCCcE
Q 033904 22 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 101 (109)
Q Consensus 22 ~Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGdnV 101 (109)
.|+++|++++ +++|.|+|++|++|.|+|.+||+||||+|+||+|+.. +++ .+.+|.+||||+||
T Consensus 2 ~p~~~L~~~~--gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~----~~~----------~~~lg~v~IRG~nI 65 (119)
T 1b34_A 2 KLVRFLMKLS--HETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLK----NRE----------PVQLETLSIRGNNI 65 (119)
T ss_dssp CHHHHHHTCT--TCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECT----TSC----------CEEEEEEEECGGGE
T ss_pred ChHHHHHHhC--CCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecC----CCc----------eeEcceEEEcCCeE
Confidence 6999999999 9999999999999999999999999999999999752 111 25799999999999
Q ss_pred EEEEeCC
Q 033904 102 IIVLRNP 108 (109)
Q Consensus 102 v~I~~~p 108 (109)
++|+.+.
T Consensus 66 ~~I~~pd 72 (119)
T 1b34_A 66 RYFILPD 72 (119)
T ss_dssp EEEECCT
T ss_pred EEEEecc
Confidence 9999764
No 23
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.83 E-value=2.7e-20 Score=128.94 Aligned_cols=71 Identities=14% Similarity=0.290 Sum_probs=63.6
Q ss_pred CCcHHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccccccccceeeeceEEEeCCc
Q 033904 21 TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 100 (109)
Q Consensus 21 ~~Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGdn 100 (109)
..|+.+|++++ +++|.|+|++|++|+|+|.+||.||||+|+||+|+.. +++ ...++.+||||+|
T Consensus 4 ~~P~~~L~~~~--gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~----~g~----------~~~l~~v~IRGnn 67 (126)
T 2y9a_D 4 GVPIKVLHEAE--GHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYR----DGR----------VAQLEQVYIRGSK 67 (126)
T ss_dssp CCSHHHHHSCS--SCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECT----TSC----------CEEEEEEEECGGG
T ss_pred ccHHHHHHHhC--CCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcC----CCc----------EeecccEEEeCCE
Confidence 57999999999 9999999999999999999999999999999999752 222 2579999999999
Q ss_pred EEEEEeC
Q 033904 101 VIIVLRN 107 (109)
Q Consensus 101 Vv~I~~~ 107 (109)
|.+|+..
T Consensus 68 I~~I~lp 74 (126)
T 2y9a_D 68 IRFLILP 74 (126)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9999954
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.79 E-value=2.3e-19 Score=124.79 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=58.7
Q ss_pred HHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeeeeeEEeeeccCCCCCCccccccccceeeeceEEEeCCcEEE
Q 033904 24 LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVII 103 (109)
Q Consensus 24 l~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGdnVv~ 103 (109)
.++|++++ +++|.|+|++|+.|.|+|.|||+||||+|+||+|+. + +.+|.++|||+||++
T Consensus 2 ~~~L~~~i--gk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~------~------------~~lg~v~IRG~nI~~ 61 (130)
T 1m5q_A 2 VAELNNLL--GREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA------G------------EKFNRVFIMYRYIVH 61 (130)
T ss_dssp HHHHHHTT--TSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT------C------------CEEEEEEECGGGEEE
T ss_pred hhHHHHhC--CCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc------C------------CEeceEEEeCCeEEE
Confidence 36899999 999999999999999999999999999999999952 1 358999999999999
Q ss_pred EEeCC
Q 033904 104 VLRNP 108 (109)
Q Consensus 104 I~~~p 108 (109)
|+..+
T Consensus 62 I~~~d 66 (130)
T 1m5q_A 62 IDSTE 66 (130)
T ss_dssp EEECC
T ss_pred EEcCC
Confidence 99764
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.46 E-value=1.4e-06 Score=56.35 Aligned_cols=63 Identities=25% Similarity=0.275 Sum_probs=51.9
Q ss_pred CCCcHHHHHHhhhCCcEEEEEecCCeEEEEEEEEec-CccceeeeeeEEeeeccCCCCCCccccccccceeeeceEEEeC
Q 033904 20 NTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFD-RHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 98 (109)
Q Consensus 20 ~~~Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD-~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRG 98 (109)
...|+. |..++ +|.|+|.|.+|+.|+|.|.+|| ...|++|.|+-| +. ....++|-|
T Consensus 6 ~~~p~e-l~~li--~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~~~--------~~------------~~~~~iI~G 62 (86)
T 1y96_A 6 KKGPLE-WQDYI--YKEVRVTASEKNEYKGWVLTTDPVSANIVLVNFLE--------DG------------SMSVTGIMG 62 (86)
T ss_dssp HSCHHH-HHHTT--TCEEEEEETTTEEEEEEEEEECTTTCCEEEEEECT--------TS------------CEEEEEECG
T ss_pred hCCHHH-HHhhc--CCEEEEEEcCCCEEEEEEEEECCCceEEEEeeccc--------CC------------eEEEEEEec
Confidence 357875 88999 9999999999999999999999 999999999811 11 146788999
Q ss_pred CcEEEEE
Q 033904 99 DSVIIVL 105 (109)
Q Consensus 99 dnVv~I~ 105 (109)
..|.-|-
T Consensus 63 ~aI~eI~ 69 (86)
T 1y96_A 63 HAVQTVE 69 (86)
T ss_dssp GGEEEEE
T ss_pred ceEEEEE
Confidence 8887664
No 26
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=97.50 E-value=0.00016 Score=46.33 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=33.6
Q ss_pred HHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceee
Q 033904 25 SVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 62 (109)
Q Consensus 25 ~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL 62 (109)
.+|+.+.+++.+|+|.|.+|-.++|.+.+||+|+=|+-
T Consensus 10 ~fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~ 47 (82)
T 1u1s_A 10 PYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLK 47 (82)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEEEEe
Confidence 47888888899999999999999999999999985443
No 27
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=97.49 E-value=0.00012 Score=46.49 Aligned_cols=38 Identities=29% Similarity=0.302 Sum_probs=33.4
Q ss_pred HHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceee
Q 033904 25 SVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 62 (109)
Q Consensus 25 ~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL 62 (109)
.+|+.+.+++.+|+|.|.+|-.++|.+.+||+|+=|+-
T Consensus 14 ~fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~ 51 (78)
T 3ahu_A 14 QFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLE 51 (78)
T ss_dssp HHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEE
Confidence 37888888899999999999999999999999985543
No 28
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=97.44 E-value=0.00015 Score=45.55 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=33.9
Q ss_pred HHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceee
Q 033904 25 SVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 62 (109)
Q Consensus 25 ~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL 62 (109)
.+|+.+.+++.+|.|.|.+|-.++|.+.+||+|+=++-
T Consensus 12 ~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL~ 49 (74)
T 2ylb_A 12 PFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK 49 (74)
T ss_dssp HHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE
Confidence 48888888899999999999999999999999985443
No 29
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=97.43 E-value=0.00019 Score=45.44 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=34.2
Q ss_pred HHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeee
Q 033904 25 SVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 63 (109)
Q Consensus 25 ~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~ 63 (109)
.+|+.+.+++.+|.|.|.+|-.++|.+.+||+|+=++-.
T Consensus 10 ~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~ 48 (77)
T 1kq1_A 10 KALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNS 48 (77)
T ss_dssp HHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEE
T ss_pred HHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEEE
Confidence 378888888999999999999999999999999855543
No 30
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=97.42 E-value=0.00023 Score=45.27 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=33.5
Q ss_pred HHHHHhhhCCcEEEEEecCCeEEEEEEEEecCcccee
Q 033904 25 SVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 61 (109)
Q Consensus 25 ~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlv 61 (109)
.+|+.+.+++.+|.|.|.+|-.++|.+.+||+|+=++
T Consensus 11 ~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL 47 (79)
T 3sb2_A 11 PFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL 47 (79)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE
Confidence 4888888889999999999999999999999998554
No 31
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=97.26 E-value=0.00041 Score=46.20 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=34.6
Q ss_pred HHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeee
Q 033904 25 SVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 63 (109)
Q Consensus 25 ~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~ 63 (109)
.+|+.+.+++.+|.|.|.+|-.++|.+.+||+|+=|+-.
T Consensus 12 ~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~~ 50 (104)
T 2y90_A 12 PFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKN 50 (104)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEES
T ss_pred HHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEEC
Confidence 488999988999999999999999999999999855543
No 32
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=97.14 E-value=0.00051 Score=42.81 Aligned_cols=38 Identities=24% Similarity=0.074 Sum_probs=32.6
Q ss_pred HHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeee
Q 033904 26 VLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 63 (109)
Q Consensus 26 ~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~ 63 (109)
+|+...+++.+|+|.|.+|-.++|.+.+||+|+=++-.
T Consensus 17 fLn~~r~~~~~Vtv~L~NG~~l~G~I~~fD~ftVll~~ 54 (71)
T 2qtx_A 17 FEYARRLNGKKVKIFLRNGEVLDAEVTGVSNYEIMVKV 54 (71)
T ss_dssp CCGGGGGTTCEEEEEETTSCEEEEEEEEECSSEEEEEE
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEEe
Confidence 56666778999999999999999999999999855543
No 33
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=96.44 E-value=0.0043 Score=38.45 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=36.0
Q ss_pred cHHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceee
Q 033904 23 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 62 (109)
Q Consensus 23 Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL 62 (109)
....|+.++++...|.|.|-+|..+.|.+.-+|.|+=++.
T Consensus 10 svR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L~ 49 (70)
T 3hfo_A 10 SVRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGLV 49 (70)
T ss_dssp HHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred cHHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEEE
Confidence 3789999999999999999999999999999999975443
No 34
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=96.08 E-value=0.0084 Score=37.34 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=35.9
Q ss_pred cHHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceee
Q 033904 23 PLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 62 (109)
Q Consensus 23 Pl~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL 62 (109)
....|+.++++...|.|.|-+|..+.|.+.-+|.|+=++.
T Consensus 12 svR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L~ 51 (72)
T 3hfn_A 12 SIRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCIA 51 (72)
T ss_dssp HHHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred cHHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEEE
Confidence 3779999999999999999999999999999999974443
No 35
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=94.44 E-value=0.1 Score=31.82 Aligned_cols=41 Identities=20% Similarity=0.377 Sum_probs=32.5
Q ss_pred HHHHhhhCCcEEEEEecCCeEEEEEEEEecCccceeeeeeEEee
Q 033904 26 VLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMW 69 (109)
Q Consensus 26 ~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~E~~ 69 (109)
.|.++. |+||-|..-+...|+|+|.-||+-. +.|+|++.+.
T Consensus 10 tL~~WK--g~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~ 50 (71)
T 1ycy_A 10 VLKEWK--GHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVI 50 (71)
T ss_dssp HHHHHT--TSEEEEEEC----CEEEEEEECSSE-EEEEEEEETT
T ss_pred HHHHhC--CcEEEEEecCcceeeeehhhcCcce-eehhhHHHHh
Confidence 577777 9999999999999999999999975 7789998765
No 36
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=92.92 E-value=1 Score=28.66 Aligned_cols=64 Identities=22% Similarity=0.317 Sum_probs=48.9
Q ss_pred HHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCcc-ceeeeeeEEeeeccCCCCCCccccccccceeeeceEEEeCCcEE
Q 033904 24 LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHC-NMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 102 (109)
Q Consensus 24 l~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~m-NlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGdnVv 102 (109)
|.+|.... +++|.+.+.++-...|...|+|... |+..++-. .|- | .++..++|+.-|+
T Consensus 21 Lr~l~~m~--~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~-----TPi-G-------------v~~eAlLR~~Dii 79 (85)
T 1y96_B 21 LRSLLAMV--GHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQ-----TPI-G-------------VQAEALLRCSDII 79 (85)
T ss_dssp HHHHHHHT--TSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEC-----CTT-C-------------CEEEEEEEGGGEE
T ss_pred HHHHHHhC--CCceEEEEeCCeEEEEEEEecCcccceeEhhhcC-----CCc-c-------------cchhhhhhcCCEE
Confidence 45566666 9999999999999999999999765 55555422 121 2 2688999999999
Q ss_pred EEEeCC
Q 033904 103 IVLRNP 108 (109)
Q Consensus 103 ~I~~~p 108 (109)
.++..+
T Consensus 80 ~~sF~~ 85 (85)
T 1y96_B 80 SYTFKP 85 (85)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 998753
No 37
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=91.91 E-value=0.28 Score=33.32 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=31.8
Q ss_pred HHHhhhCCcEEEEEecCCeEEEEEEEEecCccceee--eeeEE
Q 033904 27 LMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL--ENVRE 67 (109)
Q Consensus 27 L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL--~d~~E 67 (109)
...++ |..|.|.|++|..++|++..+|. -+|+| .+|..
T Consensus 7 ~sqFl--Gy~V~v~LkDgs~~qG~I~~vd~-k~LtL~~~~a~~ 46 (125)
T 4a53_A 7 VADFY--GSNVEVLLNNDSKARGVITNFDS-SNSILQLRLAND 46 (125)
T ss_dssp HHHHT--TCEEEEEETTSCEEEEEEEEEET-TTTEEEEEETTT
T ss_pred HHHhc--CceEEEEECCCCEeeEEEEeecC-CeeEEecccccc
Confidence 45677 99999999999999999999984 46777 87743
No 38
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=91.30 E-value=1.9 Score=27.57 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=51.1
Q ss_pred hhhCCcEEEEEecCCeEEEEEEEEecCcc-ceeeeeeEEeeeccCCCCCCccccccccceeeeceEEEeCCcEEEEEe
Q 033904 30 SVKNNTQVLINCRNNKKLLGRVRAFDRHC-NMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 106 (109)
Q Consensus 30 ~~~~~krV~V~Lr~gr~i~G~L~~fD~~m-NlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGdnVv~I~~ 106 (109)
++ |++|.+..+.+-.|.|+|...|..= -+.|.||.-+.++.++.... -+.. ..-...++.||+.|.-++-
T Consensus 11 yI--Gs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~----ipp~-~~vy~yIvFrgsDIKdL~V 81 (88)
T 2vxe_A 11 EL--GSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQ----IAPQ-SQIYDYILFRGSDIKDIRV 81 (88)
T ss_dssp CT--TCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSC----CCCC-CSCEEEEEEETTTEEEEEE
T ss_pred cc--CCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcc----cCCC-CceeeEEEEccCCccEEEE
Confidence 56 9999999999999999999999764 68899999887653221110 1111 1235889999999887653
No 39
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=90.06 E-value=2.2 Score=27.66 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=51.1
Q ss_pred HHHHHHhhhCCcEEEEEecCCeEEEEEEEEecCc-cceeeeeeEEeeeccCCCCCCccccccccceeeeceEEEeCCcEE
Q 033904 24 LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRH-CNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 102 (109)
Q Consensus 24 l~~L~~~~~~~krV~V~Lr~gr~i~G~L~~fD~~-mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~i~IRGdnVv 102 (109)
-..-..++ |++|.+..+.+-.|.|+|...|.. --+.|.+|.-+.++.++.... -+.. ..-...++.||+.|-
T Consensus 11 ~~~~~~~I--Gs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~----ipp~-~~vyeyIvFrGsDIK 83 (95)
T 2fb7_A 11 PSGGTPYI--GSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRP----IAPR-DETFEYIIFRGSDIK 83 (95)
T ss_dssp -----CCS--SEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSC----CCSC-CCCSSCEEECSTTEE
T ss_pred CCccCccc--CCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCc----cCCC-CcceeEEEEcCCCcc
Confidence 33445677 999999999999999999999964 467899988776653221110 1111 123588999999998
Q ss_pred EEEe
Q 033904 103 IVLR 106 (109)
Q Consensus 103 ~I~~ 106 (109)
-++-
T Consensus 84 DL~V 87 (95)
T 2fb7_A 84 DLTV 87 (95)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 7654
No 40
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=85.59 E-value=0.93 Score=31.63 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=28.4
Q ss_pred CCcHHH---HHHhhhCCcEEEEEec----CCeEEEEEEEEecCccceee
Q 033904 21 TGPLSV---LMMSVKNNTQVLINCR----NNKKLLGRVRAFDRHCNMVL 62 (109)
Q Consensus 21 ~~Pl~~---L~~~~~~~krV~V~Lr----~gr~i~G~L~~fD~~mNlvL 62 (109)
..||.- +.++. |+.|.|.|+ +.+.++|+|.++|.- .+.|
T Consensus 90 dRpL~~~~df~r~~--G~~V~V~l~~~~~g~k~~~G~L~~~~~~-~v~l 135 (164)
T 1ib8_A 90 ERPLKTKDAVAGAV--GKYIHVGLYQAIDKQKVFEGTLLAFEED-ELTM 135 (164)
T ss_dssp SSCCSSHHHHHHHC--SEEEEEECSSCSSSCSEEEEEEEEEETT-EEEE
T ss_pred CCCCCCHHHHHHhC--CcEEEEEEecccCCceEEEEEEEEEeCC-EEEE
Confidence 345543 44666 999999994 458999999999875 3444
No 41
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=85.28 E-value=1.8 Score=27.39 Aligned_cols=37 Identities=27% Similarity=0.314 Sum_probs=33.4
Q ss_pred HHhhhCCcEEEEEecCCe-EEEEEEEEecCcc-ceeeeeeE
Q 033904 28 MMSVKNNTQVLINCRNNK-KLLGRVRAFDRHC-NMVLENVR 66 (109)
Q Consensus 28 ~~~~~~~krV~V~Lr~gr-~i~G~L~~fD~~m-NlvL~d~~ 66 (109)
.+|+ |+.|.+..+++- .|+|.|...|..= ||.|.+|.
T Consensus 5 ~~~i--Gs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f 43 (84)
T 2vc8_A 5 TDWL--GSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF 43 (84)
T ss_dssp CTTT--TCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred cccc--CCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh
Confidence 4678 999999999997 9999999999874 89999995
No 42
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=83.61 E-value=1.7 Score=28.01 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=22.3
Q ss_pred HHHHHHhhhCCcEEEEEecCCeEEEEEE
Q 033904 24 LSVLMMSVKNNTQVLINCRNNKKLLGRV 51 (109)
Q Consensus 24 l~~L~~~~~~~krV~V~Lr~gr~i~G~L 51 (109)
|.-+...++-..+|+++|.||+.+.|++
T Consensus 18 Le~~~~~LdGq~~v~i~l~DGs~l~GTv 45 (101)
T 2e12_A 18 LEHWVKLLDGQERVRIELDDGSMIAGTV 45 (101)
T ss_dssp HHHHHHTSCTTCEEEEEETTSCEEEEEE
T ss_pred HHHHHHhhCCeeEEEEEEcCCCeEeeee
Confidence 3445555656789999999999999986
No 43
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=81.58 E-value=2.4 Score=31.58 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=29.5
Q ss_pred CcEEEEEecCCeEEEEEEEEecCccceeeeee
Q 033904 34 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 65 (109)
Q Consensus 34 ~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~ 65 (109)
|++|+|.+.++..+.|+..+.|..-.|+|++.
T Consensus 224 g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 224 GSRVRVELPGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp TSEEEEECTTSCEEEEEEEEECTTSCEEEEET
T ss_pred CCEEEEEECCCeEEEEEEEEECCCCeEEEEEC
Confidence 89999998888999999999999999999764
No 44
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=65.86 E-value=8.5 Score=27.75 Aligned_cols=31 Identities=6% Similarity=0.136 Sum_probs=26.4
Q ss_pred CCcEEEEEecCCeEEEEEEEEecCccceeeeee
Q 033904 33 NNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 65 (109)
Q Consensus 33 ~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~ 65 (109)
.+++|+|...++ +.|+..+.|..-.|+|++.
T Consensus 187 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~ 217 (233)
T 2eay_A 187 LGEEVKLLGEGK--ITGKLVGLSEKGGALILTE 217 (233)
T ss_dssp TTSEEEETTEEE--EEEEEEEECTTSCEEEEET
T ss_pred cCCEEEEEECCe--EEEEEEEECCCCeEEEEEC
Confidence 489999876554 9999999999999999753
No 45
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=55.07 E-value=18 Score=26.02 Aligned_cols=40 Identities=25% Similarity=0.211 Sum_probs=31.5
Q ss_pred HHHHHHhhh----CCcEEEEEecCCeEEEEEEEEecCccceeeee
Q 033904 24 LSVLMMSVK----NNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 64 (109)
Q Consensus 24 l~~L~~~~~----~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d 64 (109)
-.++..+.. .|++|+|...++..+.|+..+.|..-.|+ ++
T Consensus 178 ~~~~~~~~~~~~~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 178 YEILKKYKKYSITIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp HHHHHHHHHHBSSTTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred HHHHHHHHHhhCccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 344544433 49999999887766999999999999999 64
No 46
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=54.37 E-value=10 Score=27.47 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=23.9
Q ss_pred CCcEEEEEecCCeEEEEEEEEecCccceeeee
Q 033904 33 NNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 64 (109)
Q Consensus 33 ~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d 64 (109)
.+++|+|...++ +.|+..+.|..-.|+|++
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 589999987766 999999999999999975
No 47
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=51.44 E-value=34 Score=25.52 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=27.5
Q ss_pred CCcEEEEEecCCeEEEEEEEEecCccceeeeee
Q 033904 33 NNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 65 (109)
Q Consensus 33 ~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~ 65 (109)
.|++|+|... +..+.|+..+.|..-.|+|.+.
T Consensus 272 ~g~~V~v~~~-~~~~~G~~~gid~~G~L~v~~~ 303 (321)
T 1bia_A 272 INRPVKLIIG-DKEIFGISRGIDKQGALLLEQD 303 (321)
T ss_dssp TTSEEEEEET-TEEEEEEEEEECTTSCEEEEET
T ss_pred cCCEEEEEEC-CcEEEEEEEEECCCCeEEEEEC
Confidence 4899999865 5689999999999999999753
No 48
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=50.72 E-value=36 Score=20.58 Aligned_cols=38 Identities=18% Similarity=0.442 Sum_probs=29.7
Q ss_pred CCcEEEEEecCCeEEEEEEEEecCccceee-eeeEEeee
Q 033904 33 NNTQVLINCRNNKKLLGRVRAFDRHCNMVL-ENVREMWT 70 (109)
Q Consensus 33 ~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL-~d~~E~~~ 70 (109)
.+..|.++-.||+.|-|+++...+.-=||. .|-.|.|.
T Consensus 18 ~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv 56 (69)
T 2xk0_A 18 LQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWC 56 (69)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCEEEE
T ss_pred cCCeEEEEecCCCEEEEEEEecCCceEEEEecCCcceee
Confidence 488999999999999999987776655554 66666664
No 49
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=48.50 E-value=26 Score=27.57 Aligned_cols=33 Identities=12% Similarity=0.266 Sum_probs=28.7
Q ss_pred CcEEEEEecCCeEEEEEEEEecCccceeeeeeE
Q 033904 34 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 66 (109)
Q Consensus 34 ~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~ 66 (109)
...|.|.+.+|+.+.++++++|...+|.|=.+.
T Consensus 110 a~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv~ 142 (448)
T 1ky9_A 110 ATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQ 142 (448)
T ss_dssp EEEEEEEETTSCEEEEEEEEEETTTTEEEEEES
T ss_pred CCEEEEEECCCCEEEEEEEEEcCCCCEEEEEec
Confidence 357999999999999999999999999876543
No 50
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=48.07 E-value=30 Score=26.98 Aligned_cols=33 Identities=9% Similarity=0.279 Sum_probs=29.0
Q ss_pred CcEEEEEecCCeEEEEEEEEecCccceeeeeeE
Q 033904 34 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 66 (109)
Q Consensus 34 ~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~ 66 (109)
...+.|.+.+|+.+.++++++|...+|.|=.+.
T Consensus 87 a~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv~ 119 (436)
T 4a8c_A 87 AQKISIQLNDGREFDAKLIGSDDQSDIALLQIQ 119 (436)
T ss_pred CCEEEEEeCCCCEEEEEEEEEcCCCCEEEEEec
Confidence 468999999999999999999999998876553
No 51
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=46.69 E-value=25 Score=26.57 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=25.8
Q ss_pred CcEEEEEecCCeEEEEEEEEecCccceeeee
Q 033904 34 NTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 64 (109)
Q Consensus 34 ~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d 64 (109)
|++|+|... +..+.|+..+.|..-.|+|++
T Consensus 279 g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 279 NRTLLFTEN-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp SSCEEEECC--CEEEEEEEEECTTSCEEEEE
T ss_pred CCEEEEEEC-CeEEEEEEEEECCCCEEEEEE
Confidence 889999764 567999999999999999975
No 52
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=46.65 E-value=57 Score=21.10 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=32.7
Q ss_pred HHhhhCCcEEEEEecCCe-EEEEEEEEecCccceeeeeeEEe
Q 033904 28 MMSVKNNTQVLINCRNNK-KLLGRVRAFDRHCNMVLENVREM 68 (109)
Q Consensus 28 ~~~~~~~krV~V~Lr~gr-~i~G~L~~fD~~mNlvL~d~~E~ 68 (109)
..|+ |+-|.|...+.- .|+|.+...|+ -++.|.++...
T Consensus 8 edwi--G~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFrN 46 (103)
T 2rm4_A 8 QDWI--GCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFRN 46 (103)
T ss_dssp GGGT--TCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEET
T ss_pred ccee--ceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhhc
Confidence 4688 999999999985 99999999996 45999998864
No 53
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=43.05 E-value=51 Score=23.45 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=24.2
Q ss_pred CCcEEEEEecCCeEEEEEEEEecCccceeeeee
Q 033904 33 NNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 65 (109)
Q Consensus 33 ~~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~ 65 (109)
.|++|+| ++ +.|+..+.|..-.|+|+..
T Consensus 193 ~g~~V~v---~~--~~G~~~gId~~G~L~v~~~ 220 (235)
T 3bfm_A 193 MGEARTE---AG--RSGTFLGVDEDFGMLLRDE 220 (235)
T ss_dssp TTSEEEE---TT--EEEEEEEECTTCCEEEECS
T ss_pred cCCEEEE---Ee--EEEEEEEECCCCeEEEEeC
Confidence 3899998 45 9999999999999999753
No 54
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=42.55 E-value=1.7 Score=28.37 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=17.0
Q ss_pred EEEEEEecCccceeeeeeE
Q 033904 48 LGRVRAFDRHCNMVLENVR 66 (109)
Q Consensus 48 ~G~L~~fD~~mNlvL~d~~ 66 (109)
.|..++||+-.||.|++|.
T Consensus 34 ~~~~~~FDk~TNl~LEeA~ 52 (99)
T 1x4r_A 34 KNITQCFDKMTNMKLEVAW 52 (99)
T ss_dssp SSCEEECCTTHHHHHHHHH
T ss_pred CCeEeechHHHHHHHHHHH
Confidence 4678999999999999987
No 55
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=41.66 E-value=27 Score=22.78 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=21.3
Q ss_pred cCCeEEEEEE---EEecCccceeeeeeEEe
Q 033904 42 RNNKKLLGRV---RAFDRHCNMVLENVREM 68 (109)
Q Consensus 42 r~gr~i~G~L---~~fD~~mNlvL~d~~E~ 68 (109)
++...|.|.| +-.|+.|.++|.|++-.
T Consensus 52 ksk~sfKG~L~tYrfcDnVWTf~lkd~~fk 81 (108)
T 1nvp_D 52 RNRVNFRGSLNTYRFCDNVWTFVLNDVEFR 81 (108)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ccCCeEeeccCCccccCcEEEEEEeceEEE
Confidence 3446788877 56799999999999854
No 56
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=41.19 E-value=46 Score=19.45 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=28.2
Q ss_pred CCcEEEEEecCCeEEEEEEEEecCcc---ceeeeeeEEeee
Q 033904 33 NNTQVLINCRNNKKLLGRVRAFDRHC---NMVLENVREMWT 70 (109)
Q Consensus 33 ~~krV~V~Lr~gr~i~G~L~~fD~~m---NlvL~d~~E~~~ 70 (109)
.|.-|.+.-.||+-|-|++..+|+.- =+...|-.+.|.
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~ 46 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 46 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEE
Confidence 47889999999999999999988763 233355555553
No 57
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=40.59 E-value=40 Score=25.49 Aligned_cols=32 Identities=9% Similarity=0.272 Sum_probs=28.0
Q ss_pred CcEEEEEecCCeEEEEEEEEecCccceeeeee
Q 033904 34 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 65 (109)
Q Consensus 34 ~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~ 65 (109)
...+.|.+.+|+.+.+.++++|....|.|=.+
T Consensus 87 ~~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 87 AQKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EEEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 45799999999999999999999999887554
No 58
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=39.33 E-value=55 Score=24.08 Aligned_cols=33 Identities=6% Similarity=0.193 Sum_probs=28.1
Q ss_pred CcEEEEEecCCeEEEEEEEEecCccceeeeeeE
Q 033904 34 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 66 (109)
Q Consensus 34 ~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~ 66 (109)
...+.|.+.+|+.+.+.+.++|...+|.|=.+.
T Consensus 65 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAllk~~ 97 (318)
T 1te0_A 65 ADQIIVALQDGRVFEALLVGSDSLTDLAVLIIK 97 (318)
T ss_dssp CSEEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred CCEEEEEeCCCCEEEEEEEEeCCCceEEEEEEe
Confidence 447899999999999999999999998876544
No 59
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=38.57 E-value=38 Score=21.48 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=21.2
Q ss_pred HHHHhhhCCcEEEEEecCCe----EEEEEEEE
Q 033904 26 VLMMSVKNNTQVLINCRNNK----KLLGRVRA 53 (109)
Q Consensus 26 ~L~~~~~~~krV~V~Lr~gr----~i~G~L~~ 53 (109)
-|..++ |++|.+..+.|| +-.|.|..
T Consensus 19 ~l~~~v--G~~V~l~An~GRkK~~er~GvL~e 48 (90)
T 3fb9_A 19 EIKAHE--GQVVEMTLENGRKRQKNRLGKLIE 48 (90)
T ss_dssp HHHHTT--TSEEEEEECCSSSCCSCEEEEEEE
T ss_pred HHHHcC--CCEEEEEecCCcccEEEEEEEEEE
Confidence 466777 999999999997 46798864
No 60
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=38.51 E-value=57 Score=24.15 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=28.2
Q ss_pred CcEEEEEecCCeEEEEEEEEecCccceeeeeeE
Q 033904 34 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 66 (109)
Q Consensus 34 ~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~ 66 (109)
...+.|.+.+|+.+.+.+.++|....|.|=...
T Consensus 70 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAllkl~ 102 (325)
T 1lcy_A 70 RRRVRVRLLSGDTYEAVVTAVDPVADIATLRIQ 102 (325)
T ss_dssp CSEEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred CCEEEEEeCCCCEEEEEEEEECCCCCEEEEEEc
Confidence 457999999999999999999999988875543
No 61
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=37.91 E-value=65 Score=22.56 Aligned_cols=33 Identities=6% Similarity=0.205 Sum_probs=28.4
Q ss_pred CcEEEEEecCCeEEEEEEEEecCccceeeeeeE
Q 033904 34 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 66 (109)
Q Consensus 34 ~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~ 66 (109)
...+.|.+.+|+.+.+.++++|....|.|=...
T Consensus 76 ~~~~~V~~~~g~~~~a~vv~~d~~~DlAll~l~ 108 (237)
T 3lgi_A 76 ADQIIVALQDGRVFEALLVGSDSLTDLAVLKIN 108 (237)
T ss_dssp CSEEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred CCEEEEEeCCCCEEEEEEEEEcCCCCEEEEEec
Confidence 468999999999999999999999988775543
No 62
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=37.53 E-value=34 Score=22.83 Aligned_cols=30 Identities=10% Similarity=0.165 Sum_probs=22.7
Q ss_pred ecCCeEEEEEE---EEecCccceeeeeeEEeee
Q 033904 41 CRNNKKLLGRV---RAFDRHCNMVLENVREMWT 70 (109)
Q Consensus 41 Lr~gr~i~G~L---~~fD~~mNlvL~d~~E~~~ 70 (109)
+++...|.|.| +-.|+.|.++|.|++-...
T Consensus 55 vksk~sfKG~L~tYrfcDnVWtfilkd~~fk~~ 87 (121)
T 1nh2_D 55 TQSKLTVKGNLDTYGFCDDVWTFIVKNCQVTVE 87 (121)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred hccCCeEEeeeccccccCcEEEEEEeceEEEec
Confidence 33457788877 5669999999999986543
No 63
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=37.30 E-value=21 Score=22.24 Aligned_cols=27 Identities=11% Similarity=0.295 Sum_probs=21.7
Q ss_pred HHHHHHhhhCCcEEEEEecCCeEEEEE
Q 033904 24 LSVLMMSVKNNTQVLINCRNNKKLLGR 50 (109)
Q Consensus 24 l~~L~~~~~~~krV~V~Lr~gr~i~G~ 50 (109)
.+.|.-+.-.+.+|+|.|++|..+.|+
T Consensus 15 yD~LElAc~~~~~l~l~l~dGe~~~g~ 41 (86)
T 1sg5_A 15 YDNLELACQHHLMLTLELKDGEKLQAK 41 (86)
T ss_dssp HHHHHHHHTTTTCEEEECTTTCCEEES
T ss_pred hhHHHHHHHcCCeEEEEEeCCCEEEEE
Confidence 455666666688999999999998884
No 64
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=35.45 E-value=40 Score=26.48 Aligned_cols=32 Identities=9% Similarity=0.285 Sum_probs=28.2
Q ss_pred CcEEEEEecCCeEEEEEEEEecCccceeeeee
Q 033904 34 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 65 (109)
Q Consensus 34 ~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~ 65 (109)
...+.|.+.+|+.+.+.++++|...+|.|=.+
T Consensus 101 a~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 101 ASLITVTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp EEEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred CCEEEEEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 35789999999999999999999999987655
No 65
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=33.55 E-value=50 Score=23.73 Aligned_cols=32 Identities=9% Similarity=0.272 Sum_probs=26.7
Q ss_pred CcEEEEEecCCeEEEEEEEEecCccceeeeee
Q 033904 34 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 65 (109)
Q Consensus 34 ~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~ 65 (109)
...+.|.+.+|+.+.+.++++|....|.|=.+
T Consensus 87 a~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (245)
T 3sti_A 87 AQKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (245)
T ss_dssp --CEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCCEEEEEEEEecCCCCEEEEEe
Confidence 34789999999999999999999998877554
No 66
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=31.12 E-value=70 Score=22.43 Aligned_cols=33 Identities=12% Similarity=0.348 Sum_probs=28.4
Q ss_pred CcEEEEEecCCeEEEEEEEEecCccceeeeeeE
Q 033904 34 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 66 (109)
Q Consensus 34 ~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~ 66 (109)
...+.|.+.+|+.+.+.+.++|....|.|=...
T Consensus 86 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~l~ 118 (231)
T 3tjo_A 86 KHRVKVELKNGATYEAKIKDVDEKADIALIKID 118 (231)
T ss_dssp SSEEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred CceEEEEcCCCCEEEEEEEEecCCCCEEEEEec
Confidence 468999999999999999999999988875544
No 67
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=29.34 E-value=90 Score=23.29 Aligned_cols=33 Identities=9% Similarity=0.266 Sum_probs=28.5
Q ss_pred CcEEEEEecCCeEEEEEEEEecCccceeeeeeE
Q 033904 34 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 66 (109)
Q Consensus 34 ~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~ 66 (109)
...+.|.+.+|+.+.+.+.++|....|.|=...
T Consensus 76 ~~~i~V~~~~g~~~~a~~v~~d~~~DlAlLkl~ 108 (348)
T 3qo6_A 76 ASDLRVTLADQTTFDAKVVGFDQDKDVAVLRID 108 (348)
T ss_dssp CSEEEEECTTSCEEEEEEEEEEGGGTEEEEECC
T ss_pred CcEEEEEECCCCEEEEEEEEEcCcCCEEEEEEc
Confidence 468999999999999999999999988876543
No 68
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=29.23 E-value=59 Score=23.88 Aligned_cols=32 Identities=9% Similarity=0.132 Sum_probs=27.6
Q ss_pred cEEEEEecCCeEEEEEEEEecCccceeeeeeE
Q 033904 35 TQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 66 (109)
Q Consensus 35 krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~ 66 (109)
..+.|.+.+|+.+.+.+.+||...+|.|=...
T Consensus 64 ~~i~V~~~~g~~~~a~vv~~d~~~DlAllkl~ 95 (324)
T 1y8t_A 64 PKTTVTFSDGRTAPFTVVGADPTSDIAVVRVQ 95 (324)
T ss_dssp CEEEEEETTCCEECEEEEECCTTTTEEEEEEC
T ss_pred eEEEEEeCCCCEEEEEEEEeCCCCCEEEEEEC
Confidence 47999999999999999999999998875543
No 69
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=24.19 E-value=1.2e+02 Score=22.40 Aligned_cols=33 Identities=12% Similarity=0.348 Sum_probs=28.2
Q ss_pred CcEEEEEecCCeEEEEEEEEecCccceeeeeeE
Q 033904 34 NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 66 (109)
Q Consensus 34 ~krV~V~Lr~gr~i~G~L~~fD~~mNlvL~d~~ 66 (109)
...+.|.+.+|+.+.+.+.++|....|.|=...
T Consensus 69 ~~~i~V~~~~g~~~~a~~~~~d~~~DlAlL~l~ 101 (332)
T 3num_A 69 KHRVKVELKNGATYEAKIKDVDEKADIALIKID 101 (332)
T ss_dssp TSEEEEEETTSCEEEEEEEEEETTTTEEEEEEC
T ss_pred CCEEEEEECCCCEEEEEEEEecCCCCeEEEEEc
Confidence 457999999999999999999999998875443
No 70
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=22.10 E-value=83 Score=25.68 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=27.2
Q ss_pred CcEEEEEec-CCeEEEEEEEEecCccceeeeee
Q 033904 34 NTQVLINCR-NNKKLLGRVRAFDRHCNMVLENV 65 (109)
Q Consensus 34 ~krV~V~Lr-~gr~i~G~L~~fD~~mNlvL~d~ 65 (109)
...|.|.+. +|+.+.++++++|....|.|=.+
T Consensus 96 a~~i~V~~~~dg~~~~A~vv~~D~~~DLAvLkv 128 (539)
T 4fln_A 96 DTQVKVKRRGDDRKYVAKVLVRGVDCDIALLSV 128 (539)
T ss_dssp EEEEEEECTTCCCCEEEEEEEEETTTTEEEEEE
T ss_pred CCeEEEEEccCCEEEEEEEEEECCCCCEEEEEE
Confidence 457899986 89999999999999999887543
No 71
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=20.04 E-value=62 Score=23.16 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=15.2
Q ss_pred CcEEEEEecCCeEEEEEEEE
Q 033904 34 NTQVLINCRNNKKLLGRVRA 53 (109)
Q Consensus 34 ~krV~V~Lr~gr~i~G~L~~ 53 (109)
|..|+|.+.+|+.+.|++.+
T Consensus 171 Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 171 AQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp TSEEEEEETTSCEEEEEECT
T ss_pred CCEEEEECCCCCEEEEEEec
Confidence 77788888788888887654
Done!