AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>033906
MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRN
VGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESAGKASQKRIRSG
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with ELF4-L4 ELF4-L4 ELF4-L4 AT1G17455	protein from Arabidopsis thaliana	3.6e-34
BLAST match view associations BLAST with ELF4-L3 ELF4-L3 ELF4-L3 AT2G06255	protein from Arabidopsis thaliana	2.3e-32
BLAST match view associations BLAST with ELF4-L2 ELF4-L2 ELF4-L2 AT1G72630	protein from Arabidopsis thaliana	6.0e-32
BLAST match view associations BLAST with ELF4 ELF4 ELF4 AT2G40080	protein from Arabidopsis thaliana	5.8e-18
BLAST match view associations BLAST with ELF4-L1 ELF4-L1 ELF4-L1 AT2G29950	protein from Arabidopsis thaliana	8.8e-15
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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033906
        (109 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006126 - symbol:ELF4-L4 "AT1G17455" species...   371  3.6e-34   1
TAIR|locus:505006240 - symbol:ELF4-L3 "AT2G06255" species...   354  2.3e-32   1
TAIR|locus:2030165 - symbol:ELF4-L2 "AT1G72630" species:3...   350  6.0e-32   1
TAIR|locus:2061226 - symbol:ELF4 "AT2G40080" species:3702...   218  5.8e-18   1
TAIR|locus:2045673 - symbol:ELF4-L1 "AT2G29950" species:3...   188  8.8e-15   1


>TAIR|locus:505006126 [details] [associations]
            symbol:ELF4-L4 "AT1G17455" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009648 "photoperiodism" evidence=IEP]
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0042803
            GO:GO:0048511 EMBL:AC022492 GO:GO:0009648 EMBL:AC007843
            HOGENOM:HOG000240133 ProtClustDB:CLSN2683840 InterPro:IPR009741
            Pfam:PF07011 EMBL:AK220611 EMBL:BT025588 EMBL:AY085165
            IPI:IPI00544242 RefSeq:NP_001154348.1 RefSeq:NP_564024.1
            UniGene:At.41834 PRIDE:Q570U6 EnsemblPlants:AT1G17455.1
            EnsemblPlants:AT1G17455.2 GeneID:838318 KEGG:ath:AT1G17455
            TAIR:At1g17455 eggNOG:NOG273243 InParanoid:Q570U6 OMA:HESKQPD
            PhylomeDB:Q570U6 Genevestigator:Q570U6 Uniprot:Q570U6
        Length = 114

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 78/115 (67%), Positives = 92/115 (80%)

Query:     1 MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRN 60
             MEGD+ SG G+    ++G+++Q+FQ+SF  VQDILDQNRLLINEINQNHESK PDNL RN
Sbjct:     1 MEGDVLSGFGDRHN-MDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRN 59

Query:    61 VGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESAG------KASQKRIRSG 109
             VGLIKELNNNIRRV +LY DLS SF+RSV+ S E ES+G      KA+QKR RSG
Sbjct:    60 VGLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRSG 114


>TAIR|locus:505006240 [details] [associations]
            symbol:ELF4-L3 "AT2G06255" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] GO:GO:0005634 GO:GO:0042803 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0048511 HOGENOM:HOG000240133
            ProtClustDB:CLSN2683840 InterPro:IPR009741 Pfam:PF07011
            EMBL:AC006918 EMBL:AY086681 IPI:IPI00520010 RefSeq:NP_565334.1
            UniGene:At.41090 EnsemblPlants:AT2G06255.1 GeneID:815182
            KEGG:ath:AT2G06255 TAIR:At2g06255 eggNOG:NOG281919
            InParanoid:Q8S8F5 OMA:LISEINH PhylomeDB:Q8S8F5
            Genevestigator:Q8S8F5 Uniprot:Q8S8F5
        Length = 109

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 68/107 (63%), Positives = 87/107 (81%)

Query:     1 MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRN 60
             MEGD  S +  +G Q++G+++QTF++SF QVQ+ILD NRLLINEINQNHESKIPDNL RN
Sbjct:     1 MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60

Query:    61 VGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESAGKASQKRIR 107
             VGLI+ELNNN+RRV +LY DLS +FS+S+E S E +S+     +RIR
Sbjct:    61 VGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDSSEGRGNRRIR 107


>TAIR|locus:2030165 [details] [associations]
            symbol:ELF4-L2 "AT1G72630" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009648 "photoperiodism"
            evidence=IEP] EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
            GO:GO:0042803 GO:GO:0048511 EMBL:AC010926 GO:GO:0009648
            HOGENOM:HOG000240133 ProtClustDB:CLSN2683840 InterPro:IPR009741
            Pfam:PF07011 EMBL:AY039916 EMBL:AY079311 EMBL:AY085916
            IPI:IPI00539364 PIR:H96750 RefSeq:NP_565044.1 UniGene:At.19324
            IntAct:Q94BS8 STRING:Q94BS8 PRIDE:Q94BS8 EnsemblPlants:AT1G72630.1
            GeneID:843595 KEGG:ath:AT1G72630 TAIR:At1g72630 eggNOG:NOG300198
            InParanoid:Q94BS8 OMA:HESKQAD PhylomeDB:Q94BS8
            Genevestigator:Q94BS8 Uniprot:Q94BS8
        Length = 119

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 76/116 (65%), Positives = 90/116 (77%)

Query:     1 MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRN 60
             MEGD++SG G    Q++G+++Q FQ+SF QVQDILDQNRLLINEINQNHESK  D+L RN
Sbjct:     5 MEGDVYSGFGER-YQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRN 63

Query:    61 VGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESAG------KAS-QKRIRSG 109
             VGLI+ELNNNIR V +LY DLS SF+RSV+ S E ES G      KA+ QKR RSG
Sbjct:    64 VGLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTGTLKSDGKANNQKRFRSG 119


>TAIR|locus:2061226 [details] [associations]
            symbol:ELF4 "AT2G40080" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0009648 "photoperiodism"
            evidence=IEP;IMP] [GO:0009909 "regulation of flower development"
            evidence=IMP] [GO:0042753 "positive regulation of circadian rhythm"
            evidence=IMP] [GO:0010114 "response to red light" evidence=IMP]
            [GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
            [GO:0009649 "entrainment of circadian clock" evidence=IMP]
            [GO:0048573 "photoperiodism, flowering" evidence=IMP] [GO:0080167
            "response to karrikin" evidence=IEP] [GO:0042803 "protein
            homodimerization activity" evidence=IDA] GO:GO:0005634
            GO:GO:0042803 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009649
            GO:GO:0048511 GO:GO:0080167 GO:GO:0010114 GO:GO:0009585
            GO:GO:0009908 GO:GO:0048573 GO:GO:0009909 GO:GO:0010017
            EMBL:AF002109 GO:GO:0042753 HOGENOM:HOG000240133
            ProtClustDB:CLSN2683840 InterPro:IPR009741 Pfam:PF07011
            EMBL:AY035183 EMBL:AY062963 EMBL:AY088748 IPI:IPI00528125
            PIR:A84825 RefSeq:NP_565922.1 UniGene:At.14672 UniGene:At.67850
            STRING:O04211 PRIDE:O04211 EnsemblPlants:AT2G40080.1 GeneID:818596
            KEGG:ath:AT2G40080 TAIR:At2g40080 eggNOG:NOG295440
            InParanoid:O04211 OMA:DPAMWEN PhylomeDB:O04211
            Genevestigator:O04211 Uniprot:O04211
        Length = 111

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 40/84 (47%), Positives = 58/84 (69%)

Query:    22 QTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRNVGLIKELNNNIRRVVNLYADL 81
             +   R+F QVQ +LD+NR LI ++N NH+S++ DN+++NV LI+ELN NI +VVN+Y+DL
Sbjct:    27 ENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVNMYSDL 86

Query:    82 STSFSRSVEGSLEDESAGKASQKR 105
             +TSFS    G       G A+  R
Sbjct:    87 NTSFSSGFHGGKNGHDGGGAAGTR 110


>TAIR|locus:2045673 [details] [associations]
            symbol:ELF4-L1 "AT2G29950" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0042753 "positive regulation of circadian rhythm"
            evidence=IMP] GO:GO:0005634 GO:GO:0042803 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0048511 EMBL:AC004680 GO:GO:0042753
            EMBL:AY954806 EMBL:AY648325 IPI:IPI00542331 PIR:T02490
            RefSeq:NP_180556.1 UniGene:At.27228 UniGene:At.50818
            UniGene:At.68809 EnsemblPlants:AT2G29950.1 GeneID:817545
            KEGG:ath:AT2G29950 TAIR:At2g29950 eggNOG:NOG286501
            HOGENOM:HOG000240133 InParanoid:O80877 OMA:PEMNEND PhylomeDB:O80877
            ProtClustDB:CLSN2683840 Genevestigator:O80877 InterPro:IPR009741
            Pfam:PF07011 Uniprot:O80877
        Length = 125

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 35/71 (49%), Positives = 50/71 (70%)

Query:    20 VMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRNVGLIKELNNNIRRVVNLYA 79
             V  T    F + Q  LDQNR LI  +N+NH S+IPDN++RNVGLI E+N NI +V+ +Y+
Sbjct:    37 VWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVMEIYS 96

Query:    80 DLSTSFSRSVE 90
             DLS +F++  +
Sbjct:    97 DLSLNFAKKFD 107


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.132   0.352    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      109       109   0.00091  102 3  11 23  0.50    30
                                                     29  0.41    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  436 (46 KB)
  Total size of DFA:  85 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.59u 0.13s 14.72t   Elapsed:  00:00:00
  Total cpu time:  14.59u 0.13s 14.72t   Elapsed:  00:00:00
  Start:  Fri May 10 08:03:57 2013   End:  Fri May 10 08:03:57 2013
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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
