BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033906
(109 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q570U6|EF4L4_ARATH Protein ELF4-LIKE 4 OS=Arabidopsis thaliana GN=EFL4 PE=2 SV=1
Length = 114
Score = 148 bits (374), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 78/115 (67%), Positives = 92/115 (80%), Gaps = 7/115 (6%)
Query: 1 MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRN 60
MEGD+ SG G+ ++G+++Q+FQ+SF VQDILDQNRLLINEINQNHESK PDNL RN
Sbjct: 1 MEGDVLSGFGDR-HNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRN 59
Query: 61 VGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESA------GKASQKRIRSG 109
VGLIKELNNNIRRV +LY DLS SF+RSV+ S E ES+ GKA+QKR RSG
Sbjct: 60 VGLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRSG 114
>sp|Q8S8F5|EF4L3_ARATH Protein ELF4-LIKE 3 OS=Arabidopsis thaliana GN=EFL3 PE=3 SV=1
Length = 109
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/109 (62%), Positives = 87/109 (79%)
Query: 1 MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRN 60
MEGD S + +G Q++G+++QTF++SF QVQ+ILD NRLLINEINQNHESKIPDNL RN
Sbjct: 1 MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60
Query: 61 VGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESAGKASQKRIRSG 109
VGLI+ELNNN+RRV +LY DLS +FS+S+E S E +S+ +RIR
Sbjct: 61 VGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDSSEGRGNRRIRPA 109
>sp|Q94BS8|EF4L2_ARATH Protein ELF4-LIKE 2 OS=Arabidopsis thaliana GN=EFL2 PE=2 SV=1
Length = 119
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/116 (65%), Positives = 90/116 (77%), Gaps = 8/116 (6%)
Query: 1 MEGDIFSGIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRN 60
MEGD++SG G Q++G+++Q FQ+SF QVQDILDQNRLLINEINQNHESK D+L RN
Sbjct: 5 MEGDVYSGFGER-YQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRN 63
Query: 61 VGLIKELNNNIRRVVNLYADLSTSFSRSVEGSLEDESA------GKA-SQKRIRSG 109
VGLI+ELNNNIR V +LY DLS SF+RSV+ S E ES GKA +QKR RSG
Sbjct: 64 VGLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTGTLKSDGKANNQKRFRSG 119
>sp|O04211|ELF4_ARATH Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1
SV=1
Length = 111
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 54/67 (80%)
Query: 20 VMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRNVGLIKELNNNIRRVVNLYA 79
+ + R+F QVQ +LD+NR LI ++N NH+S++ DN+++NV LI+ELN NI +VVN+Y+
Sbjct: 25 MWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVNMYS 84
Query: 80 DLSTSFS 86
DL+TSFS
Sbjct: 85 DLNTSFS 91
>sp|O80877|EF4L1_ARATH Protein ELF4-LIKE 1 OS=Arabidopsis thaliana GN=EFL1 PE=2 SV=1
Length = 125
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 50/71 (70%)
Query: 20 VMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRNVGLIKELNNNIRRVVNLYA 79
V T F + Q LDQNR LI +N+NH S+IPDN++RNVGLI E+N NI +V+ +Y+
Sbjct: 37 VWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVMEIYS 96
Query: 80 DLSTSFSRSVE 90
DLS +F++ +
Sbjct: 97 DLSLNFAKKFD 107
>sp|Q4QNU2|QUEA_HAEI8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
OS=Haemophilus influenzae (strain 86-028NP) GN=queA
PE=3 SV=1
Length = 363
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 15 QVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNH 49
Q+NG + F R+F V D++DQ LLI N H
Sbjct: 30 QLNGENGEIFHRTFSDVLDLIDQGDLLI--FNNTH 62
>sp|Q8BMI3|GGA3_MOUSE ADP-ribosylation factor-binding protein GGA3 OS=Mus musculus
GN=Gga3 PE=2 SV=2
Length = 718
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 33 DILDQNRLLINEINQNHESKIPDNLTRNVGLIKELNNNIRRVVNLYADLSTSFSRSVEGS 92
D+ + NRL+ + + ++ E++I +T+ + ++E+NNN++ + + S +S +
Sbjct: 189 DLQEANRLIKSMVKED-EARI-QKVTKRLHTLEEVNNNVKLLHEMLLHYSQEYSSDADKE 246
Query: 93 LEDESAGKASQKR 105
L E + KR
Sbjct: 247 LMKELFDRCENKR 259
>sp|Q9Y2W6|TDRKH_HUMAN Tudor and KH domain-containing protein OS=Homo sapiens GN=TDRKH
PE=1 SV=2
Length = 561
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 20/24 (83%)
Query: 41 LINEINQNHESKIPDNLTRNVGLI 64
L+NE+ Q++E+ +P++LT +VG I
Sbjct: 336 LVNEMTQHYENSVPEDLTVHVGDI 359
>sp|A9KH99|LON_CLOPH Lon protease OS=Clostridium phytofermentans (strain ATCC 700394 /
DSM 18823 / ISDg) GN=lon PE=3 SV=1
Length = 809
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 34 ILDQNRLLINEINQNHESKIPDNLTRNVGLIKELNNNIRRVVNLYADLSTSFSRSVEGSL 93
+L+Q LL+++I+ E+ D+L R VG I E+ I+ N+ L T R+ SL
Sbjct: 42 LLNQQVLLVSQIDAETENPTADDLYR-VGTIAEIKQMIKLPGNVIRVLVTGLERATLDSL 100
Query: 94 EDESAGKASQ 103
E +Q
Sbjct: 101 VSEQPYLKAQ 110
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,837,154
Number of Sequences: 539616
Number of extensions: 1340027
Number of successful extensions: 3857
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 3823
Number of HSP's gapped (non-prelim): 62
length of query: 109
length of database: 191,569,459
effective HSP length: 77
effective length of query: 32
effective length of database: 150,019,027
effective search space: 4800608864
effective search space used: 4800608864
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)