Query 033906
Match_columns 109
No_of_seqs 66 out of 68
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 12:41:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wh0_Q Pkcev3, protein kinase 63.2 3.6 0.00012 23.7 1.6 14 63-76 14-27 (31)
2 1wr6_A ADP-ribosylation factor 50.5 32 0.0011 23.6 5.0 57 15-83 34-90 (111)
3 2cp8_A NEXT to BRCA1 gene 1 pr 37.0 11 0.00036 23.7 0.8 20 58-77 25-44 (54)
4 3kv9_A JMJC domain-containing 32.1 31 0.0011 28.5 3.0 32 44-76 355-386 (397)
5 3cr3_A PTS-dependent dihydroxy 31.6 1.1E+02 0.0037 22.3 5.6 66 23-92 6-78 (192)
6 3k3o_A PHF8, PHD finger protei 29.2 33 0.0011 28.1 2.7 30 45-75 328-357 (371)
7 4afl_A P29ING4, inhibitor of g 29.0 9.9 0.00034 24.9 -0.3 21 52-72 15-35 (104)
8 2di4_A Zinc protease, cell div 28.6 48 0.0017 25.2 3.4 32 16-47 151-182 (238)
9 1oxz_A ADP-ribosylation factor 28.0 1.5E+02 0.0052 21.9 6.0 56 17-84 105-160 (186)
10 2fup_A Hypothetical protein PA 25.4 45 0.0016 22.1 2.5 26 18-43 92-117 (157)
11 3kv5_D JMJC domain-containing 24.7 43 0.0015 28.0 2.6 31 46-77 448-478 (488)
12 1e91_A Paired amphipathic heli 24.3 69 0.0024 20.7 3.1 21 27-47 58-78 (85)
13 1naf_A ADP-ribosylation factor 23.1 1.6E+02 0.0054 21.3 5.2 56 17-84 89-144 (158)
14 2nps_B Syntaxin 13, vesicle-as 22.8 69 0.0024 19.6 2.8 23 64-86 8-30 (71)
15 3opc_A Uncharacterized protein 22.1 1E+02 0.0035 20.8 3.7 27 18-44 91-117 (154)
16 1o3x_A ADP-ribosylation factor 21.6 1.6E+02 0.0053 20.8 4.8 55 17-83 80-134 (140)
17 1gl2_B Syntaxin 7; membrane pr 20.3 84 0.0029 19.0 2.8 23 64-86 11-33 (65)
18 3nvo_A Zinc transport protein 20.2 2.4E+02 0.0082 20.0 7.5 65 18-85 186-253 (264)
No 1
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=63.24 E-value=3.6 Score=23.69 Aligned_cols=14 Identities=57% Similarity=0.826 Sum_probs=11.9
Q ss_pred HHHHHhhhHHHHHH
Q 033906 63 LIKELNNNIRRVVN 76 (109)
Q Consensus 63 LIrELN~NI~rVv~ 76 (109)
-|+||-+||+|..+
T Consensus 14 eikelennirkals 27 (31)
T 2wh0_Q 14 EIKELENNIRKALS 27 (31)
T ss_pred HHHHHHHHHHHHhc
Confidence 48999999999754
No 2
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=50.50 E-value=32 Score=23.62 Aligned_cols=57 Identities=23% Similarity=0.345 Sum_probs=45.2
Q ss_pred ccchhhhHHHHHhHHHHHHHHhhhHHHHHHHhhccccCCCCchhhhHHHHHHHhhhHHHHHHHHhhhhh
Q 033906 15 QVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRNVGLIKELNNNIRRVVNLYADLST 83 (109)
Q Consensus 15 ~~d~~~~~~f~ksF~qVQ~iLDqNR~LI~EINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~LYsdLS~ 83 (109)
..|.++.+-+-.+-++.|-.|-+ ||.+...|.+. ++=|=++|-.|.+|+.-|..+-.
T Consensus 34 ~~d~ell~ELy~~ck~~qp~i~k---L~~e~~ddde~---------l~elL~~ND~ln~vi~rY~~~~~ 90 (111)
T 1wr6_A 34 DGDRELMKELFDQCENKRRTLFK---LASETEDNDNS---------LGDILQASDNLSRVINSYKTIIE 90 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHTCCTTCSS---------HHHHHHHHHHHHHHHTHHHHTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHH---HHHHhccCHHH---------HHHHHHHhHHHHHHHHHHHHHhc
Confidence 56778888888888888887765 78877666654 45577899999999999988743
No 3
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=36.99 E-value=11 Score=23.69 Aligned_cols=20 Identities=40% Similarity=0.429 Sum_probs=17.7
Q ss_pred hhhHHHHHHHhhhHHHHHHH
Q 033906 58 TRNVGLIKELNNNIRRVVNL 77 (109)
Q Consensus 58 ~RNV~LIrELN~NI~rVv~L 77 (109)
.+|+.+.+..|+|+.++|+.
T Consensus 25 ~~N~~aL~~~~gnv~~aI~~ 44 (54)
T 2cp8_A 25 QLNLRLLKKHNYNILQVVTE 44 (54)
T ss_dssp HHHHHHHTTTTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 57999999999999999864
No 4
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=32.13 E-value=31 Score=28.49 Aligned_cols=32 Identities=44% Similarity=0.617 Sum_probs=26.8
Q ss_pred HHhhccccCCCCchhhhHHHHHHHhhhHHHHHH
Q 033906 44 EINQNHESKIPDNLTRNVGLIKELNNNIRRVVN 76 (109)
Q Consensus 44 EINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~ 76 (109)
+...-|++.+|+++ +=+.||+||..-|+-+-+
T Consensus 355 ~~~~~~~~~~p~~~-~~~~~~~~l~~~~~~~~~ 386 (397)
T 3kv9_A 355 ELVSEHAFEIPDNV-RPGHLIKELSKVIRAIEE 386 (397)
T ss_dssp TTGGGTGGGSCTTC-CHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCcC-CHHHHHHHHHHHHHHHHh
Confidence 44567999999999 699999999988887654
No 5
>3cr3_A PTS-dependent dihydroxyacetone kinase, ADP- binding subunit DHAL; transient protein-protein complex transferase complex PTS- dependent dihydroxyacetone kinase; HET: ADP; 2.10A {Lactococcus lactis subsp} SCOP: a.208.1.1
Probab=31.63 E-value=1.1e+02 Score=22.32 Aligned_cols=66 Identities=18% Similarity=0.379 Sum_probs=44.4
Q ss_pred HHHHhHHHHHHHHhhhHHHHHHHhhccccCCCC-----chhhhHHHHH-HHhhh-HHHHHHHHhhhhhhhhhhccCc
Q 033906 23 TFQRSFGQVQDILDQNRLLINEINQNHESKIPD-----NLTRNVGLIK-ELNNN-IRRVVNLYADLSTSFSRSVEGS 92 (109)
Q Consensus 23 ~f~ksF~qVQ~iLDqNR~LI~EINqNHeSr~Pd-----nL~RNV~LIr-ELN~N-I~rVv~LYsdLS~sF~~~~~~s 92 (109)
.|.+-|..+-..|..|+.-|+++|. ++|| ||.|=..-|. +|... -..+.++...++..+...+.++
T Consensus 6 ~~~~~l~~~~~~l~~~~~~L~~LD~----~vGDGD~G~nm~~g~~a~~~~l~~~~~~~~~~~l~~~~~~~~~~~gG~ 78 (192)
T 3cr3_A 6 TTIEWLGKFNEKIQENKAYLSELDG----PIGDGDHGANMARGMSETMKALEVSNFGNVSEIFKKVAMTLMSKVGGA 78 (192)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHTT----TTSCSCHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHCCST
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhCC----CCCCCchhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 4667788899999999999999996 8898 5777765554 34320 1124455555666666555543
No 6
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=29.24 E-value=33 Score=28.10 Aligned_cols=30 Identities=43% Similarity=0.672 Sum_probs=25.4
Q ss_pred HhhccccCCCCchhhhHHHHHHHhhhHHHHH
Q 033906 45 INQNHESKIPDNLTRNVGLIKELNNNIRRVV 75 (109)
Q Consensus 45 INqNHeSr~PdnL~RNV~LIrELN~NI~rVv 75 (109)
.---|+..||+++ +=..||++|..-|+-+-
T Consensus 328 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 357 (371)
T 3k3o_A 328 ALPDHEDEIPETV-RTVQLIKDLAREIRLVE 357 (371)
T ss_dssp TGGGTGGGSCTTC-CHHHHHHHHHHHHHHHH
T ss_pred hccchhhhccccC-CHHHHHHHHHHHHHHHH
Confidence 3455999999999 68999999999988764
No 7
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=29.03 E-value=9.9 Score=24.88 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=16.5
Q ss_pred CCCCchhhhHHHHHHHhhhHH
Q 033906 52 KIPDNLTRNVGLIKELNNNIR 72 (109)
Q Consensus 52 r~PdnL~RNV~LIrELN~NI~ 72 (109)
-+|.-|.|+..+||||=.-..
T Consensus 15 ~LP~El~r~~~~irelD~~~~ 35 (104)
T 4afl_A 15 NLPFELQRNFQLMRDLDQRTE 35 (104)
T ss_dssp GHHHHHHHHHHHHHHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999865443
No 8
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=28.63 E-value=48 Score=25.22 Aligned_cols=32 Identities=6% Similarity=0.303 Sum_probs=27.5
Q ss_pred cchhhhHHHHHhHHHHHHHHhhhHHHHHHHhh
Q 033906 16 VNGRVMQTFQRSFGQVQDILDQNRLLINEINQ 47 (109)
Q Consensus 16 ~d~~~~~~f~ksF~qVQ~iLDqNR~LI~EINq 47 (109)
+|.++-.-+...+.++..||.+||..+..|=+
T Consensus 151 iD~Ev~~il~~ay~~a~~iL~~nr~~L~~lA~ 182 (238)
T 2di4_A 151 IDEEVKRIITEQYEKAKAIVEEYKEPLKAVVK 182 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888899999999999999999887643
No 9
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=28.03 E-value=1.5e+02 Score=21.94 Aligned_cols=56 Identities=23% Similarity=0.418 Sum_probs=42.8
Q ss_pred chhhhHHHHHhHHHHHHHHhhhHHHHHHHhhccccCCCCchhhhHHHHHHHhhhHHHHHHHHhhhhhh
Q 033906 17 NGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRNVGLIKELNNNIRRVVNLYADLSTS 84 (109)
Q Consensus 17 d~~~~~~f~ksF~qVQ~iLDqNR~LI~EINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~LYsdLS~s 84 (109)
|.++.+.+-..-++.|-.|-+ ||.+...|.+. ++=|=++|-.|.+|+.-|..+..+
T Consensus 105 d~Ell~eL~~~Ck~~qp~i~~---Li~e~~ddee~---------L~elL~~ND~Ln~vl~kY~~~~~g 160 (186)
T 1oxz_A 105 SEDLMKELYQRCERMRPTLFR---LASDTEDNDEA---------LAEILQANDNLTQVINLYKQLVRG 160 (186)
T ss_dssp THHHHHHHHHHHHHHHHHHHH---HHHHCCSCHHH---------HHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH---HHHHccCCHHH---------HHHHHHhhHHHHHHHHHHHHHhcC
Confidence 788888888888888877754 77776555443 355678999999999999888543
No 10
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=25.43 E-value=45 Score=22.12 Aligned_cols=26 Identities=12% Similarity=-0.032 Sum_probs=20.3
Q ss_pred hhhhHHHHHhHHHHHHHHhhhHHHHH
Q 033906 18 GRVMQTFQRSFGQVQDILDQNRLLIN 43 (109)
Q Consensus 18 ~~~~~~f~ksF~qVQ~iLDqNR~LI~ 43 (109)
.+.|+.+.....+++..=+.|..||+
T Consensus 92 ~~~~~~l~~l~~~~~~~N~~Ng~Li~ 117 (157)
T 2fup_A 92 LARGDELGELLERCQQANLRNGRIIR 117 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888888888876
No 11
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=24.70 E-value=43 Score=27.96 Aligned_cols=31 Identities=42% Similarity=0.538 Sum_probs=24.5
Q ss_pred hhccccCCCCchhhhHHHHHHHhhhHHHHHHH
Q 033906 46 NQNHESKIPDNLTRNVGLIKELNNNIRRVVNL 77 (109)
Q Consensus 46 NqNHeSr~PdnL~RNV~LIrELN~NI~rVv~L 77 (109)
..-|+..||+++ +=+.||+||..-|+-+-+.
T Consensus 448 ~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~ 478 (488)
T 3kv5_D 448 VSEHAFEIPDNV-RPGHLIKELSKVIRAIEEE 478 (488)
T ss_dssp ---CGGGCCSSS-CTTHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcC-CHHHHHHHHHHHHHHHHhh
Confidence 346999999999 5999999999988876553
No 12
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=24.29 E-value=69 Score=20.70 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=16.3
Q ss_pred hHHHHHHHHhhhHHHHHHHhh
Q 033906 27 SFGQVQDILDQNRLLINEINQ 47 (109)
Q Consensus 27 sF~qVQ~iLDqNR~LI~EINq 47 (109)
-..+|+.++.-...||.+.|+
T Consensus 58 V~~~V~~Lf~~hpDLl~~F~~ 78 (85)
T 1e91_A 58 VFTEVANLFRGQEDLLSEFGQ 78 (85)
T ss_dssp HHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHH
Confidence 567788888888888888764
No 13
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=23.06 E-value=1.6e+02 Score=21.35 Aligned_cols=56 Identities=23% Similarity=0.418 Sum_probs=41.5
Q ss_pred chhhhHHHHHhHHHHHHHHhhhHHHHHHHhhccccCCCCchhhhHHHHHHHhhhHHHHHHHHhhhhhh
Q 033906 17 NGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRNVGLIKELNNNIRRVVNLYADLSTS 84 (109)
Q Consensus 17 d~~~~~~f~ksF~qVQ~iLDqNR~LI~EINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~LYsdLS~s 84 (109)
|.++.+.+-.+-++.|-.|-+ ||.+...|.+. ++=|=++|-.|.+|+.-|..+..+
T Consensus 89 d~Ell~eL~~~Ck~~qp~i~~---Li~e~~ddee~---------L~elL~~ND~Ln~vl~kY~~~~~g 144 (158)
T 1naf_A 89 SEDLMKELYQRCERMRPTLFR---LASDTEDNDEA---------LAEILQANDNLTQVINLYKQLVRG 144 (158)
T ss_dssp CTTHHHHHHHHHHTHHHHHHH---HHHHCCSCHHH---------HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHHHHHHHH---HHHHccCCHHH---------HHHHHHhhHHHHHHHHHHHHHhcC
Confidence 778888888888888877754 77765444332 345678999999999999988543
No 14
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=22.78 E-value=69 Score=19.64 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.0
Q ss_pred HHHHhhhHHHHHHHHhhhhhhhh
Q 033906 64 IKELNNNIRRVVNLYADLSTSFS 86 (109)
Q Consensus 64 IrELN~NI~rVv~LYsdLS~sF~ 86 (109)
|++|-..|.-+-++|.||+.-..
T Consensus 8 i~~ie~~i~eL~~iF~dla~lV~ 30 (71)
T 2nps_B 8 IQQLEADILDVNQIFKDLAMMIH 30 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999987654
No 15
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=22.07 E-value=1e+02 Score=20.77 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=23.6
Q ss_pred hhhhHHHHHhHHHHHHHHhhhHHHHHH
Q 033906 18 GRVMQTFQRSFGQVQDILDQNRLLINE 44 (109)
Q Consensus 18 ~~~~~~f~ksF~qVQ~iLDqNR~LI~E 44 (109)
.+.|+.+.....+.|..=++|..||+.
T Consensus 91 ~~~w~~l~~l~~~c~~~N~~Ng~Li~~ 117 (154)
T 3opc_A 91 GPLWQALQANAAQAREHNQRNGTLIAV 117 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999875
No 16
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=21.59 E-value=1.6e+02 Score=20.81 Aligned_cols=55 Identities=24% Similarity=0.424 Sum_probs=38.4
Q ss_pred chhhhHHHHHhHHHHHHHHhhhHHHHHHHhhccccCCCCchhhhHHHHHHHhhhHHHHHHHHhhhhh
Q 033906 17 NGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRNVGLIKELNNNIRRVVNLYADLST 83 (109)
Q Consensus 17 d~~~~~~f~ksF~qVQ~iLDqNR~LI~EINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~LYsdLS~ 83 (109)
|.++.+.+-.+-++.|-.|-+ ||.+...|.+. ++=|=++|-.|.+|+.-|..+..
T Consensus 80 d~Ell~eL~~~ck~~qp~i~~---li~e~~ddee~---------l~elL~~ND~ln~vl~kY~~~~~ 134 (140)
T 1o3x_A 80 SEDLMKELYQRCERMRPTLFR---LASDTEDNDEA---------LAEILQANDNLTQVINLYKQLVR 134 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHTTCTTCHHH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH---HHHHccCCHHH---------HHHHHHhhHHHHHHHHHHHHHhc
Confidence 677887777777777766644 56554444332 34466899999999999988743
No 17
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=20.28 E-value=84 Score=19.02 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=19.3
Q ss_pred HHHHhhhHHHHHHHHhhhhhhhh
Q 033906 64 IKELNNNIRRVVNLYADLSTSFS 86 (109)
Q Consensus 64 IrELN~NI~rVv~LYsdLS~sF~ 86 (109)
|++|-..|.-+-++|.||+.-..
T Consensus 11 i~~ie~~i~eL~~iF~dla~lV~ 33 (65)
T 1gl2_B 11 IRQLEADIMDINEIFKDLGMMIH 33 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888899999999999987654
No 18
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=20.17 E-value=2.4e+02 Score=19.98 Aligned_cols=65 Identities=5% Similarity=0.128 Sum_probs=47.6
Q ss_pred hhhhHHHHHhHHHHHHHHhhhHHHHHHHhhccccCCCCchhhhHHHHHHHhhhHHHHHH---HHhhhhhhh
Q 033906 18 GRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRNVGLIKELNNNIRRVVN---LYADLSTSF 85 (109)
Q Consensus 18 ~~~~~~f~ksF~qVQ~iLDqNR~LI~EINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~---LYsdLS~sF 85 (109)
-.-+..+.|.....+..|-.+|.+++.+-..+...+++ ..-..+|++..-+.|+.+ .|+++.++-
T Consensus 186 l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~---~~~~~l~Dv~d~~~~~~e~~~~~re~l~~l 253 (264)
T 3nvo_A 186 RGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWMSD---DHRRRMQDIADRLGRGLDEIDACIARTGIM 253 (264)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCCccCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578899999999999999999999998776555554 344567777777777654 455554443
Done!