Query 033906
Match_columns 109
No_of_seqs 66 out of 68
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 12:42:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033906.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033906hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2di4a1 a.269.1.1 (A:406-607) 33.5 19 0.0013 23.6 3.4 30 16-45 142-171 (202)
2 d2ce7a1 a.269.1.1 (A:411-603) 28.2 26 0.0019 22.7 3.4 30 16-45 143-172 (193)
3 d1tqga_ a.24.10.3 (A:) Chemota 26.1 13 0.00093 22.1 1.4 27 11-37 76-102 (105)
4 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 24.0 43 0.0031 22.2 4.0 77 8-89 21-101 (146)
5 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 21.5 31 0.0023 21.2 2.7 20 64-83 171-190 (196)
6 d1ssqa_ b.81.1.6 (A:) Serine a 19.8 34 0.0025 23.6 2.8 30 16-48 1-30 (241)
7 d2daha1 a.5.2.1 (A:8-48) Ubiqu 19.3 34 0.0024 18.7 2.2 21 57-77 17-37 (41)
8 d1i5na_ a.24.10.3 (A:) Chemota 18.8 22 0.0016 21.6 1.4 27 11-37 75-101 (128)
9 d1bg1a1 a.47.1.1 (A:136-321) S 17.7 1.3E+02 0.0093 20.5 5.5 27 21-47 125-151 (186)
10 d1qhda1 a.115.1.2 (A:1-148,A:3 17.6 26 0.0019 25.5 1.8 8 40-47 29-36 (213)
No 1
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=33.47 E-value=19 Score=23.61 Aligned_cols=30 Identities=7% Similarity=0.330 Sum_probs=26.6
Q ss_pred cchhhhHHHHHhHHHHHHHHhhhHHHHHHH
Q 033906 16 VNGRVMQTFQRSFGQVQDILDQNRLLINEI 45 (109)
Q Consensus 16 ~d~~~~~~f~ksF~qVQ~iLDqNR~LI~EI 45 (109)
+|.++-.-+++.+.++..||.+||.++..|
T Consensus 142 id~ev~~ll~~a~~~a~~iL~~~~~~l~~l 171 (202)
T d2di4a1 142 IDEEVKRIITEQYEKAKAIVEEYKEPLKAV 171 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 577788888999999999999999998876
No 2
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=28.18 E-value=26 Score=22.74 Aligned_cols=30 Identities=13% Similarity=0.400 Sum_probs=25.7
Q ss_pred cchhhhHHHHHhHHHHHHHHhhhHHHHHHH
Q 033906 16 VNGRVMQTFQRSFGQVQDILDQNRLLINEI 45 (109)
Q Consensus 16 ~d~~~~~~f~ksF~qVQ~iLDqNR~LI~EI 45 (109)
+|.++-..+.+.+..+..||.+||.++..|
T Consensus 143 id~ev~~ll~~a~~~a~~iL~~~~~~l~~l 172 (193)
T d2ce7a1 143 IDEEVKKIVTNCYERAKEIIRKYRKQLDNI 172 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 566677788889999999999999998876
No 3
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]}
Probab=26.07 E-value=13 Score=22.12 Aligned_cols=27 Identities=7% Similarity=0.308 Sum_probs=21.7
Q ss_pred CCCcccchhhhHHHHHhHHHHHHHHhh
Q 033906 11 NNGTQVNGRVMQTFQRSFGQVQDILDQ 37 (109)
Q Consensus 11 ~~g~~~d~~~~~~f~ksF~qVQ~iLDq 37 (109)
.++.+++++..+.+.+.+..++.+||+
T Consensus 76 ~~~~~~~~~~~~~l~~~~d~l~~~l~~ 102 (105)
T d1tqga_ 76 NSEIKITSDLLDKIFAGVDMITRMVDK 102 (105)
T ss_dssp TTSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 334567899999999999999888875
No 4
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=24.00 E-value=43 Score=22.24 Aligned_cols=77 Identities=6% Similarity=0.140 Sum_probs=50.9
Q ss_pred cCCCCCcccchhhhHHHHHhHHHHHHHHhhhHHHHHHHhhccccCCCCchhhhHHHHHHHh----hhHHHHHHHHhhhhh
Q 033906 8 GIGNNGTQVNGRVMQTFQRSFGQVQDILDQNRLLINEINQNHESKIPDNLTRNVGLIKELN----NNIRRVVNLYADLST 83 (109)
Q Consensus 8 ~~~~~g~~~d~~~~~~f~ksF~qVQ~iLDqNR~LI~EINqNHeSr~PdnL~RNV~LIrELN----~NI~rVv~LYsdLS~ 83 (109)
|+|- ++-.+..+.+|..+ .|++++++.+...+..=++=...-++.++.=-..+.||. -|=.|||.||+ .+.
T Consensus 21 g~~~-~e~l~~p~~~tik~---~v~~i~~kh~~~F~~ml~~L~i~~~~~~~~f~~V~~elF~DG~~NWGRIVaLfa-Fg~ 95 (146)
T d1k3ka_ 21 GLNE-PEYLYHPLLSPIKL---YITGLMRDKESLFEAMLANVRFHSTTGIDQLGLSMLQVSGDGNMNWGRALAILT-FGS 95 (146)
T ss_dssp TTCC-CSSCCCSSCSHHHH---HHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHTHHHHHCSSCSCCHHHHHHHHH-HHH
T ss_pred cCCc-hHhhcCchhHHHHH---HHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHH
Confidence 4555 33466677777775 678999999888877655544433344433344567775 58999999998 466
Q ss_pred hhhhhc
Q 033906 84 SFSRSV 89 (109)
Q Consensus 84 sF~~~~ 89 (109)
..+..+
T Consensus 96 ~la~~~ 101 (146)
T d1k3ka_ 96 FVAQKL 101 (146)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 555554
No 5
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.50 E-value=31 Score=21.17 Aligned_cols=20 Identities=15% Similarity=0.496 Sum_probs=16.0
Q ss_pred HHHHhhhHHHHHHHHhhhhh
Q 033906 64 IKELNNNIRRVVNLYADLST 83 (109)
Q Consensus 64 IrELN~NI~rVv~LYsdLS~ 83 (109)
|++|-..|.-|-+||.||+.
T Consensus 171 I~~Ie~sI~eL~~iF~dLa~ 190 (196)
T d1fioa_ 171 LLKLEKSMAELTQLFNDMEE 190 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 66777888888888888875
No 6
>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}
Probab=19.78 E-value=34 Score=23.63 Aligned_cols=30 Identities=13% Similarity=0.295 Sum_probs=24.4
Q ss_pred cchhhhHHHHHhHHHHHHHHhhhHHHHHHHhhc
Q 033906 16 VNGRVMQTFQRSFGQVQDILDQNRLLINEINQN 48 (109)
Q Consensus 16 ~d~~~~~~f~ksF~qVQ~iLDqNR~LI~EINqN 48 (109)
+|.++|+++.. +++..++++..|=.-+.+.
T Consensus 1 ~~~~iW~~i~~---ea~~~~~~EP~L~~~~~~~ 30 (241)
T d1ssqa_ 1 MNLDVWQHIRQ---EAKELAENEPMLASFFHST 30 (241)
T ss_dssp CCHHHHHHHHH---HHHHHHHHCHHHHHHHHHH
T ss_pred CChHHHHHHHH---HHHHHHhhCcHHHHHHHHh
Confidence 57789999986 8888999988888776654
No 7
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.34 E-value=34 Score=18.72 Aligned_cols=21 Identities=10% Similarity=0.120 Sum_probs=18.2
Q ss_pred hhhhHHHHHHHhhhHHHHHHH
Q 033906 57 LTRNVGLIKELNNNIRRVVNL 77 (109)
Q Consensus 57 L~RNV~LIrELN~NI~rVv~L 77 (109)
=.+|+.-.++.||||.+-|+.
T Consensus 17 ~~~Ni~AL~~t~Gdv~~Aie~ 37 (41)
T d2daha1 17 REANLQALIATGGDVDAAVEK 37 (41)
T ss_dssp HHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHH
Confidence 368999999999999998875
No 8
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}
Probab=18.76 E-value=22 Score=21.61 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=21.6
Q ss_pred CCCcccchhhhHHHHHhHHHHHHHHhh
Q 033906 11 NNGTQVNGRVMQTFQRSFGQVQDILDQ 37 (109)
Q Consensus 11 ~~g~~~d~~~~~~f~ksF~qVQ~iLDq 37 (109)
.+...+++.+...+.+.+..++.+|++
T Consensus 75 ~~~~~~~~~~~~~l~~~~d~l~~~l~~ 101 (128)
T d1i5na_ 75 RGEMQLNTDIINLFLETKDIMQEQLDA 101 (128)
T ss_dssp TTSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 334678999999999999988887763
No 9
>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.66 E-value=1.3e+02 Score=20.47 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=24.6
Q ss_pred hHHHHHhHHHHHHHHhhhHHHHHHHhh
Q 033906 21 MQTFQRSFGQVQDILDQNRLLINEINQ 47 (109)
Q Consensus 21 ~~~f~ksF~qVQ~iLDqNR~LI~EINq 47 (109)
++.+|+-|..+-.+|=|+|-.|.++-+
T Consensus 125 LDqLQ~W~e~lAe~i~q~Rqqlk~l~~ 151 (186)
T d1bg1a1 125 LDRLENWITSLAESQLQTRQQIKKLEE 151 (186)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999988755
No 10
>d1qhda1 a.115.1.2 (A:1-148,A:333-397) vp6, the major capsid protein of group A rotavirus {Bovine rotavirus [TaxId: 10927]}
Probab=17.56 E-value=26 Score=25.48 Aligned_cols=8 Identities=50% Similarity=0.580 Sum_probs=5.0
Q ss_pred HHHHHHhh
Q 033906 40 LLINEINQ 47 (109)
Q Consensus 40 ~LI~EINq 47 (109)
.||||+||
T Consensus 29 DiiQQ~Nq 36 (213)
T d1qhda1 29 DLIQQFNQ 36 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 46666665
Done!