BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033908
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 221
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 56 DVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIA 99
D PQQ P DCG+++ M T+Y LDFD R+ IA
Sbjct: 170 DCPQQ-PNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIA 212
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
Length = 238
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 26 VFPQWLQDVGFYNIRPELQSADPWKV--RIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLK 83
+ Q+L+ R E + + W++ + +++PQQ GS DCG+F + +
Sbjct: 156 ILLQYLKQESIDKKRKEFDT-NGWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRP 213
Query: 84 LDFDSSHGHYFRKKIAVDIF 103
++F H YFRK++ +I
Sbjct: 214 INFTQQHMPYFRKRMVWEIL 233
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 26 VFPQWLQDVGFYNIRPELQSADPWKV--RIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLK 83
+ Q+L+ R E + + W++ + +++PQQ GS DCG+F + +
Sbjct: 148 ILLQYLKQESIDKKRKEFDT-NGWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRP 205
Query: 84 LDFDSSHGHYFRKKIAVDIF 103
++F H YFRK++ +I
Sbjct: 206 INFTQQHMPYFRKRMVWEIL 225
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 26 VFPQWLQDVGFYNIRPELQSADPWKV--RIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLK 83
+ Q+L+ R E + + W++ + +++PQQ GS DCG+F + +
Sbjct: 144 ILLQYLKQESIDKKRKEFDT-NGWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRP 201
Query: 84 LDFDSSHGHYFRKKIAVDIF 103
++F H YFRK++ +I
Sbjct: 202 INFTQQHMPYFRKRMVWEIL 221
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 57 VPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIF 103
+PQQ GS DCG+F + + ++F H YFRK++ +I
Sbjct: 175 IPQQMNGS-DCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEIL 220
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1
pdb|1TH0|A Chain A, Structure Of Human Senp2
pdb|1TH0|B Chain B, Structure Of Human Senp2
Length = 226
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 26 VFPQWLQDVGFYNIRPELQSADPWKVRIVK--DVPQQEPGSGDCGVFMLMFTMYLMFGLK 83
+ Q+LQD +L + W +K ++PQQ GS DCG+F + Y+
Sbjct: 144 ILLQYLQDESKTKRNSDLNLLE-WTHHSMKPHEIPQQLNGS-DCGMFTCKYADYISRDKP 201
Query: 84 LDFDSSHGHYFRKKIAVDIF 103
+ F FRKK+ +I
Sbjct: 202 ITFTQHQMPLFRKKMVWEIL 221
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 26 VFPQWLQDVGFYNIRPELQSADPWKV--RIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLK 83
+ Q+L+ R E + + W++ + +++PQQ GS D G+F + +
Sbjct: 144 ILLQYLKQESIDKKRKEFDT-NGWQLFSKKSQEIPQQMNGS-DAGMFACKYADCITKDRP 201
Query: 84 LDFDSSHGHYFRKKIAVDIF 103
++F H YFRK++ +I
Sbjct: 202 INFTQQHMPYFRKRMVWEIL 221
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
Length = 205
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 26 VFPQWLQDVGFYNIRPELQSADPWKV--RIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLK 83
+ Q+L+ R E + + W++ + +++PQQ GS D G+F + +
Sbjct: 123 ILLQYLKQESIDKKRKEFDT-NGWQLFSKKSQEIPQQMNGS-DSGMFACKYADCITKDRP 180
Query: 84 LDFDSSHGHYFRKKIAVDIF 103
++F H YFRK++ +I
Sbjct: 181 INFTQQHMPYFRKRMVWEIL 200
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfenic Acid
pdb|2HL8|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfinic Acid
pdb|2HL9|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfonic Acid
Length = 221
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 56 DVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIA 99
D PQQ P D G+++ M T+Y LDFD R+ IA
Sbjct: 170 DCPQQ-PNGYDXGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIA 212
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin
Length = 632
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 70 FMLMFTMYLMFGLKLDFDSSHGHYFRK--KIAVDIF 103
F L+F + + G K +FD HYF+K K ++D F
Sbjct: 394 FNLLFHLETILGGKAEFDPFIRHYFKKFAKKSLDTF 429
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From
Saccharomyces Cerevisiae
pdb|2XPZ|A Chain A, Structure Of Native Yeast Lta4 Hydrolase
Length = 632
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 70 FMLMFTMYLMFGLKLDFDSSHGHYFRK--KIAVDIF 103
F L+F + + G K +FD HYF+K K ++D F
Sbjct: 394 FNLLFHLETILGGKAEFDPFIRHYFKKFAKKSLDTF 429
>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
Length = 645
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 19 KFKPLQVVFPQWLQDVGFYNIRPE 42
K +P + FP W+ D FY I P+
Sbjct: 192 KARPFSIEFPTWVIDRVFYQIMPD 215
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2
pdb|2IO1|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|C Chain C, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|E Chain E, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO2|A Chain A, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
pdb|2IO3|A Chain A, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 232
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 26 VFPQWLQDVGFYNIRPELQSADPWKVRIVK--DVPQQEPGSGDCGVFMLMFTMYLMFGLK 83
+ Q+LQD +L + W +K ++PQQ GS D G+F + Y+
Sbjct: 150 ILLQYLQDESKTKRNSDLNLLE-WTHHSMKPHEIPQQLNGS-DSGMFTCKYADYISRDKP 207
Query: 84 LDFDSSHGHYFRKKIAVDIF 103
+ F FRKK+ +I
Sbjct: 208 ITFTQHQMPLFRKKMVWEIL 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.146 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,510,441
Number of Sequences: 62578
Number of extensions: 132648
Number of successful extensions: 298
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 14
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)