BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033908
(109 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana
GN=ESD4 PE=1 SV=1
Length = 489
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 46 ADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIF 103
A+ W + V+D+PQQ+ G DCG+FML + + GL L F H YFR + A +I
Sbjct: 428 ANSWDMEFVEDLPQQKNGY-DCGMFMLKYIDFFSRGLGLCFSQEHMPYFRLRTAKEIL 484
>sp|O65278|ULP1B_ARATH Putative ubiquitin-like-specific protease 1B OS=Arabidopsis
thaliana GN=ULP1B PE=5 SV=2
Length = 341
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 49 WKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIF 103
W + V++ PQQ+ G DCG+FML + + GL L F YFR + A +I
Sbjct: 283 WGMEYVEERPQQQNGY-DCGMFMLKYIDFYSRGLSLQFSQKDMPYFRLRTAKEIL 336
>sp|Q8GYL3|ULP1A_ARATH Ubiquitin-like-specific protease 1A OS=Arabidopsis thaliana
GN=ULP1A PE=2 SV=2
Length = 502
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 49 WKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIF 103
W+ V+D+P Q G DCG+FM+ + + GL L F YFR + A +I
Sbjct: 444 WRQEFVQDLPMQRNGF-DCGMFMVKYIDFYSRGLDLCFTQEQMPYFRARTAKEIL 497
>sp|Q09353|SENP_CAEEL Sentrin-specific protease OS=Caenorhabditis elegans GN=ulp-1 PE=2
SV=3
Length = 697
Score = 35.8 bits (81), Expect = 0.080, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 49 WKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDI 102
W ++ + D+P+Q+ GS DCGVF F + F + Y+RK++ +I
Sbjct: 636 WTIQQMTDIPRQQNGS-DCGVFSCQFGEWASRRTTPRFTQKNMPYYRKRMVYEI 688
>sp|Q96HI0|SENP5_HUMAN Sentrin-specific protease 5 OS=Homo sapiens GN=SENP5 PE=1 SV=3
Length = 755
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 40 RPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKI 98
RPE W+ + K +PQQ+ S DCGVF+L + L F RK+I
Sbjct: 689 RPEFLQG--WQTAVTKCIPQQKNDS-DCGVFVLQYCKCLALEQPFQFSQEDMPRVRKRI 744
>sp|Q5RBB1|SENP1_PONAB Sentrin-specific protease 1 OS=Pongo abelii GN=SENP1 PE=2 SV=1
Length = 645
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 26 VFPQWLQDVGFYNIRPELQSADPWKV--RIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLK 83
+ Q+L+ R E + + W++ + +++PQQ GS DCG+F + +
Sbjct: 563 ILLQYLKQESIDKKRKEFDT-NGWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRP 620
Query: 84 LDFDSSHGHYFRKKIAVDIF 103
++F H YFRK++ +I
Sbjct: 621 INFTQQHMPYFRKRMVWEIL 640
>sp|Q9P0U3|SENP1_HUMAN Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2
Length = 644
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 26 VFPQWLQDVGFYNIRPELQSADPWKV--RIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLK 83
+ Q+L+ R E + + W++ + +++PQQ GS DCG+F + +
Sbjct: 562 ILLQYLKQESIDKKRKEFDT-NGWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRP 619
Query: 84 LDFDSSHGHYFRKKIAVDIF 103
++F H YFRK++ +I
Sbjct: 620 INFTQQHMPYFRKRMVWEIL 639
>sp|Q8WP32|SENP5_MACFA Sentrin-specific protease 5 OS=Macaca fascicularis GN=SENP5 PE=2
SV=1
Length = 755
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 40 RPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKI 98
RPE W+ + K +PQQ+ S DCGVF+L + L F RK+I
Sbjct: 689 RPEFLQG--WQTAVTKCIPQQKNDS-DCGVFVLQYCKCLALEQPFQFSQEDMPRVRKRI 744
>sp|Q6NXL6|SENP5_MOUSE Sentrin-specific protease 5 OS=Mus musculus GN=Senp5 PE=2 SV=1
Length = 749
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 40 RPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKI 98
RPE W+ + K +PQQ+ S DCGVF+L + L F RK+I
Sbjct: 683 RPEFLQG--WQTAVTKCIPQQKNDS-DCGVFVLQYCKCLALEQPFQFSQEDMPRVRKRI 738
>sp|P59110|SENP1_MOUSE Sentrin-specific protease 1 OS=Mus musculus GN=Senp1 PE=2 SV=1
Length = 640
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 26 VFPQWLQDVGFYNIRPELQSADPWKV--RIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLK 83
+ Q+L+ R E + + W++ + +++PQQ GS DCG+F + +
Sbjct: 558 ILLQYLKQESVDKKRKEFDT-NGWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRP 615
Query: 84 LDFDSSHGHYFRKKIAVDIF 103
++F H YFRK++ +I
Sbjct: 616 INFTQQHMPYFRKRMVWEIL 635
>sp|Q02724|ULP1_YEAST Ubiquitin-like-specific protease 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ULP1 PE=1 SV=1
Length = 621
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 56 DVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIA 99
D PQQ P DCG+++ M T+Y LDFD R+ IA
Sbjct: 570 DCPQQ-PNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIA 612
>sp|Q9VHM2|U505_DROME UPF0505 protein CG8202 OS=Drosophila melanogaster GN=CG8202 PE=2
SV=3
Length = 942
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 8 VTFREDKTYLRK-FKPLQVVFPQWLQDVGFYNIRPELQSADPW 49
VT KTY+R+ F L +++PQ + V +N+ PE+ +A +
Sbjct: 328 VTLTSSKTYIRENFADLFLIYPQIFRFVARFNLHPEIVTASSY 370
>sp|Q9EQE1|SENP2_RAT Sentrin-specific protease 2 OS=Rattus norvegicus GN=Senp2 PE=1 SV=1
Length = 588
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 20/102 (19%)
Query: 2 RIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQE 61
RI + L+ + +D++ ++ L ++ +W Y+++P ++PQQ
Sbjct: 502 RICEILLQYLQDESKTKRNTDLNLL--EWTH----YSMKPH-------------EIPQQL 542
Query: 62 PGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIF 103
GS DCG+F + Y+ + F FRKK+ +I
Sbjct: 543 NGS-DCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEIL 583
>sp|Q91ZX6|SENP2_MOUSE Sentrin-specific protease 2 OS=Mus musculus GN=Senp2 PE=1 SV=2
Length = 588
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 20/102 (19%)
Query: 2 RIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQE 61
RI + L+ + +D++ ++ L ++ +W Y+++P ++PQQ
Sbjct: 502 RICEILLQYLQDESKTKRNTDLNLL--EWTH----YSMKPH-------------EIPQQL 542
Query: 62 PGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIF 103
GS DCG+F + Y+ + F FRKK+ +I
Sbjct: 543 NGS-DCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEIL 583
>sp|Q5R7K7|SENP2_PONAB Sentrin-specific protease 2 OS=Pongo abelii GN=SENP2 PE=2 SV=1
Length = 589
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 20/102 (19%)
Query: 2 RIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQE 61
RI + L+ + +D++ ++ L ++ +W Y+++P ++PQQ
Sbjct: 503 RICEILLQYLQDESKTKRNIDLNLL--EWTH----YSMKPH-------------EIPQQL 543
Query: 62 PGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIF 103
GS DCG+F + Y+ + F FRKK+ +I
Sbjct: 544 NGS-DCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEIL 584
>sp|Q8H111|NLP1_ARATH Protein NLP1 OS=Arabidopsis thaliana GN=NLP1 PE=2 SV=1
Length = 909
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 27 FPQWLQDVGFY--NIRPELQSADPWKVRIVKDVPQQEPGSGDC-GVFMLMFTMYLM 79
FP+W DV F+ + P ++ A VR +P E GSG C GV ++ T M
Sbjct: 209 FPEWTPDVRFFRRDEYPRIKEAQKCDVRGSLALPVFERGSGTCLGVVEIVTTTQKM 264
>sp|Q9HC62|SENP2_HUMAN Sentrin-specific protease 2 OS=Homo sapiens GN=SENP2 PE=1 SV=3
Length = 589
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 56 DVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIF 103
++PQQ GS DCG+F + Y+ + F FRKK+ +I
Sbjct: 538 EIPQQLNGS-DCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEIL 584
>sp|B3PN30|GYRA_MYCA5 DNA gyrase subunit A OS=Mycoplasma arthritidis (strain 158L3-1)
GN=gyrA PE=3 SV=1
Length = 898
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 20 FKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLM 79
KP+ + ++G ++ P +SA RIV DV + GD V+ M M
Sbjct: 104 LKPVHRRILYGMSELGMFHTAPHKKSA-----RIVGDVLGKYHPHGDSSVYEAMVRMAQD 158
Query: 80 FGLKLDFDSSHGHY 93
F L+ HG++
Sbjct: 159 FSLRYPLIDGHGNF 172
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.146 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,245,854
Number of Sequences: 539616
Number of extensions: 1541391
Number of successful extensions: 3458
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3453
Number of HSP's gapped (non-prelim): 18
length of query: 109
length of database: 191,569,459
effective HSP length: 77
effective length of query: 32
effective length of database: 150,019,027
effective search space: 4800608864
effective search space used: 4800608864
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)