Query 033908
Match_columns 109
No_of_seqs 119 out of 658
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 12:43:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033908.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033908hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1th0_A SMT3-, sentrin-specific 100.0 2.6E-29 8.9E-34 180.5 11.0 97 1-108 128-226 (226)
2 2xph_A Sentrin-specific protea 100.0 5.1E-29 1.7E-33 180.3 10.6 97 1-108 140-238 (238)
3 1euv_A ULP1 protease; SUMO hyd 99.9 9.1E-25 3.1E-29 156.5 10.3 91 1-107 127-220 (221)
4 3eay_A Sentrin-specific protea 99.8 5.8E-20 2E-24 138.2 9.1 92 1-103 208-311 (323)
5 2bkr_A Sentrin-specific protea 99.8 4.8E-20 1.6E-24 130.9 6.0 86 1-104 115-208 (212)
6 2oix_A Xanthomonas outer prote 99.7 1.5E-17 5.2E-22 116.3 6.4 84 1-105 91-181 (186)
7 4ekf_A Adenain; alpha and beta 44.3 60 0.002 22.5 5.5 23 57-80 113-135 (204)
8 1p22_C Beta-catenin, Pro2286; 23.2 19 0.00067 16.7 0.2 9 61-69 9-17 (26)
9 3k8u_A Putative ABC transporte 18.0 64 0.0022 20.3 1.9 19 59-78 10-28 (156)
10 1ews_A RK-1 defensin, alpha-de 15.6 14 0.00049 17.5 -1.3 6 66-71 18-23 (32)
No 1
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=99.96 E-value=2.6e-29 Score=180.54 Aligned_cols=97 Identities=25% Similarity=0.446 Sum_probs=88.0
Q ss_pred CEEEeCCCCCCCChhHHhhcCchHHHHHHHHHHHhhhccCCCCCCCCCceeee--cCCCCCCCCCCCcchHHHHHHHHHH
Q 033908 1 MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRI--VKDVPQQEPGSGDCGVFMLMFTMYL 78 (109)
Q Consensus 1 I~~~DSl~~~~~~~~~~~~~~~~~~~l~~yl~~e~~~k~~~~~~~~~~w~~~~--~~~~PqQ~N~~~DCGvFvl~~~e~l 78 (109)
|.|||||++ .+..+.+ .|++||..|+.++.+..++.+ .|++.. ..++|||.||+ |||||||+||+++
T Consensus 128 i~~~DSl~~--~~~~~~~-------~l~~~l~~e~~~k~~~~~~~~-~w~~~~~~~~~~PqQ~Ng~-DCGvfvl~~~~~~ 196 (226)
T 1th0_A 128 LKYLDSMGQ--KGHRICE-------ILLQYLQDESKTKRNSDLNLL-EWTHHSMKPHEIPQQLNGS-DCGMFTCKYADYI 196 (226)
T ss_dssp EEEECTTCC--CCHHHHH-------HHHHHHHHHHHHHTSCCCCGG-GCEEEECCTTTSCCCCSSS-CHHHHHHHHHHHH
T ss_pred eEEEcCCCC--CchHHHH-------HHHHHHHHHHHHhcCCCCCcc-cceeccccCCCCCCCCCCC-CHHHHHHHHHHHH
Confidence 579999999 6677777 999999999988877777777 898753 36899999999 9999999999999
Q ss_pred hcCCCCccCcccHHHHHHHHHHHHhcCCCC
Q 033908 79 MFGLKLDFDSSHGHYFRKKIAVDIFPGDIA 108 (109)
Q Consensus 79 ~~~~~~~f~q~~~~~~R~~~~~el~~~~l~ 108 (109)
+.+.|++|+|+||+++|++|++||++|+|+
T Consensus 197 ~~~~~~~f~q~dm~~~R~~~~~ei~~~~l~ 226 (226)
T 1th0_A 197 SRDKPITFTQHQMPLFRKKMVWEILHQQLL 226 (226)
T ss_dssp TTTCCCCCCGGGHHHHHHHHHHHHHHTCCC
T ss_pred hCCCCCccChhhHHHHHHHHHHHHHhCCcC
Confidence 999999999999999999999999999986
No 2
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=99.96 E-value=5.1e-29 Score=180.29 Aligned_cols=97 Identities=26% Similarity=0.514 Sum_probs=88.0
Q ss_pred CEEEeCCCCCCCChhHHhhcCchHHHHHHHHHHHhhhccCCCCCCCCCceeee--cCCCCCCCCCCCcchHHHHHHHHHH
Q 033908 1 MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRI--VKDVPQQEPGSGDCGVFMLMFTMYL 78 (109)
Q Consensus 1 I~~~DSl~~~~~~~~~~~~~~~~~~~l~~yl~~e~~~k~~~~~~~~~~w~~~~--~~~~PqQ~N~~~DCGvFvl~~~e~l 78 (109)
|.|||||++ .+....+ .|.+||..++.++.+..++.. .|++.. ..++|||.||+ |||||||+||+++
T Consensus 140 i~~~DSl~~--~~~~~~~-------~l~~~L~~e~~~k~~~~~~~~-~w~~~~~~~~~~PqQ~Ng~-DCGvfvl~~~e~~ 208 (238)
T 2xph_A 140 ITYYDSMGG--INNEACR-------ILLQYLKQESIDKKRKEFDTN-GWQLFSKKSQEIPQQMNGS-DCGMFACKYADCI 208 (238)
T ss_dssp EEEECTTCC--CCHHHHH-------HHHHHHHHHHHHHHCSCCCCT-TCEEEECCSSSSCCCSBGG-GHHHHHHHHHHHH
T ss_pred EEEeecccC--CCHHHHH-------HHHHHHHHHHHHhcCCCcCcc-cceecccCCCCCCCCCCCC-CHHHHHHHHHHHH
Confidence 579999999 6677777 899999999988877777777 898752 46899999999 9999999999999
Q ss_pred hcCCCCccCcccHHHHHHHHHHHHhcCCCC
Q 033908 79 MFGLKLDFDSSHGHYFRKKIAVDIFPGDIA 108 (109)
Q Consensus 79 ~~~~~~~f~q~~~~~~R~~~~~el~~~~l~ 108 (109)
+.+.+++|+|+||+++|++|++||++|+|+
T Consensus 209 ~~~~~~~f~q~dm~~~R~~m~~eil~~~ll 238 (238)
T 2xph_A 209 TKDRPINFTQQHMPYFRKRMVWEILHRKLL 238 (238)
T ss_dssp HTTCCCCCCGGGHHHHHHHHHHHHHHTCCC
T ss_pred hcCCCCCcChhhHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999986
No 3
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=99.92 E-value=9.1e-25 Score=156.46 Aligned_cols=91 Identities=26% Similarity=0.367 Sum_probs=76.6
Q ss_pred CEEEeCCCCCCCCh---hHHhhcCchHHHHHHHHHHHhhhccCCCCCCCCCceeeecCCCCCCCCCCCcchHHHHHHHHH
Q 033908 1 MRIYDSLVTFREDK---TYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMY 77 (109)
Q Consensus 1 I~~~DSl~~~~~~~---~~~~~~~~~~~~l~~yl~~e~~~k~~~~~~~~~~w~~~~~~~~PqQ~N~~~DCGvFvl~~~e~ 77 (109)
|.|||||+++ .+. .+.+ .|++|+..|+.++.+ . .|++.. .++|||.||+ |||||||+||++
T Consensus 127 i~~~DSl~~~-~~~~~~~i~~-------~l~~~l~~e~~~~~~-----~-~~~~~~-~~~PqQ~N~~-DCGvfv~~~~~~ 190 (221)
T 1euv_A 127 IGYVDSLSNG-PNAMSFAILT-------DLQKYVMEESKHTIG-----E-DFDLIH-LDCPQQPNGY-DCGIYVCMNTLY 190 (221)
T ss_dssp EEEECSSCCS-CCHHHHHHHH-------HHHHHHHHHTTSSSC-----T-TCEEEE-ECCCCCSSSS-THHHHHHHHHHH
T ss_pred EEEEecCCCC-CcchHHHHHH-------HHHHHHHHHHHHhcC-----C-CceEee-cCCCCCCCCc-CHHHHHHHHHHH
Confidence 5799999873 232 2344 899999988765433 2 677654 5799999999 999999999999
Q ss_pred HhcCCCCccCcccHHHHHHHHHHHHhcCCC
Q 033908 78 LMFGLKLDFDSSHGHYFRKKIAVDIFPGDI 107 (109)
Q Consensus 78 l~~~~~~~f~q~~~~~~R~~~~~el~~~~l 107 (109)
++.+.+++|+|+||+.+|++|+.+|++++|
T Consensus 191 ~~~~~~l~f~~~d~~~~R~~i~~~Il~~~l 220 (221)
T 1euv_A 191 GSADAPLDFDYKDAIRMRRFIAHLILTDAL 220 (221)
T ss_dssp HHTTCCCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999986
No 4
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=99.81 E-value=5.8e-20 Score=138.19 Aligned_cols=92 Identities=20% Similarity=0.265 Sum_probs=74.6
Q ss_pred CEEEeCCCCCCCChhHHhhcCchHHHHHHHHHHHhhhccCC--CCCCCCCceeeecCCCCCCCCCCCcchHHHHHHHHHH
Q 033908 1 MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRP--ELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYL 78 (109)
Q Consensus 1 I~~~DSl~~~~~~~~~~~~~~~~~~~l~~yl~~e~~~k~~~--~~~~~~~w~~~~~~~~PqQ~N~~~DCGvFvl~~~e~l 78 (109)
|.|||||+++ .++.++. .|++||+.|+.++++. .++.. .|.... +.+|+|.||+ |||||||+|++++
T Consensus 208 Il~lDSL~~~-~~~~~~~-------~Lr~YL~~E~~~k~~~~~~f~~~-~~~~~~-~~~P~Q~N~~-DCGvfvl~~~e~~ 276 (323)
T 3eay_A 208 ILILDSLKAA-SVQNTVQ-------NLREYLEVEWEVKLKTHRQFSKT-NMVDLC-PKVPKQDNSS-DCGVYLLQYVESF 276 (323)
T ss_dssp EEEECSSCCS-SHHHHHH-------HHHHHHHHHHHHHHSSCCCCCTT-TSCEEC-CBCCCCCSTT-CHHHHHHHHHHHH
T ss_pred EEEEECCCCC-CcchHHH-------HHHHHHHHHHHhhcCCCcCCCHh-Hceecc-CCCCCcCCCC-cHHHHHHHHHHHH
Confidence 6899999983 3477888 9999999999988643 45444 677654 5799999999 9999999999999
Q ss_pred hcCCCCc----------cCcccHHHHHHHHHHHHh
Q 033908 79 MFGLKLD----------FDSSHGHYFRKKIAVDIF 103 (109)
Q Consensus 79 ~~~~~~~----------f~q~~~~~~R~~~~~el~ 103 (109)
+.+.+++ |++.++...|+.|..-|.
T Consensus 277 ~~~~~~~f~~~~~~~~wf~~~~i~~kR~ei~~LI~ 311 (323)
T 3eay_A 277 FKDPIVNFELPIHLEKWFPRHVIKTKREDIRELIL 311 (323)
T ss_dssp HHSCCCCCCSSCBCTTSSCHHHHHTHHHHHHHHHH
T ss_pred HhCCccccccccccccCCCHHHHHHHHHHHHHHHH
Confidence 9988655 556788999998886554
No 5
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=99.80 E-value=4.8e-20 Score=130.90 Aligned_cols=86 Identities=15% Similarity=0.055 Sum_probs=63.9
Q ss_pred CEEEeCCCCCCCChhHHhhcCchHHHHHHHHHHHhhhccCCCCCCCCCceeeecCCCCCCCCCCCcchHHHHHHHHHHhc
Q 033908 1 MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMF 80 (109)
Q Consensus 1 I~~~DSl~~~~~~~~~~~~~~~~~~~l~~yl~~e~~~k~~~~~~~~~~w~~~~~~~~PqQ~N~~~DCGvFvl~~~e~l~~ 80 (109)
|.|||||++ .+...++ .+.++|......+. . .|++.. .++|||.||+ |||||||+||++++.
T Consensus 115 i~~~DSl~~--~n~~~~~-------~l~~~l~~~l~~~~------~-~~~~~~-~~~PqQ~N~~-DCGvfvl~~~~~l~~ 176 (212)
T 2bkr_A 115 FFHYDSHSR--SNSVHAK-------QVAEKLEAFLGRKG------D-KLAFVE-EKAPAQQNSY-DCGMYVICNTEALCQ 176 (212)
T ss_dssp EEEECSSTT--TTHHHHH-------HHHHHHHHHHSCTT------C-CCCEEE-CCCCCCSSSS-THHHHHHHHHHHHHH
T ss_pred EEEEeCCCC--CCHHHHH-------HHHHHHHHHhCCcc------c-cceEeE-CCCCCCCCCC-cHHHHHHHHHHHHHH
Confidence 579999998 6666665 44444443332211 1 354543 5799999999 999999999999987
Q ss_pred CC--------CCccCcccHHHHHHHHHHHHhc
Q 033908 81 GL--------KLDFDSSHGHYFRKKIAVDIFP 104 (109)
Q Consensus 81 ~~--------~~~f~q~~~~~~R~~~~~el~~ 104 (109)
+. +.+|++++++.+|++|...|.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~ 208 (212)
T 2bkr_A 177 NFFRQQTESLLQLLTPAYITKKRGEWKDLIAT 208 (212)
T ss_dssp HHHSCCCCCHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HhhhcCcccccccCCHHHHHHHHHHHHHHHHH
Confidence 65 2469999999999999988764
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.70 E-value=1.5e-17 Score=116.34 Aligned_cols=84 Identities=18% Similarity=0.016 Sum_probs=57.6
Q ss_pred CEEEeCCCCCCCChhHHhhcCchHHHHHHHHHHHhhhccCCCCCCCCCceeeecCCCCCCCCCCCcchHHHHHHHHHHhc
Q 033908 1 MRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMF 80 (109)
Q Consensus 1 I~~~DSl~~~~~~~~~~~~~~~~~~~l~~yl~~e~~~k~~~~~~~~~~w~~~~~~~~PqQ~N~~~DCGvFvl~~~e~l~~ 80 (109)
|.|||||++ .+.. .. .++..|+.|+..+ ..++. ..++|||.||+ |||||||+||++++.
T Consensus 91 ~~~~DSl~~--~~~~-~~---~l~~~l~~~l~~~-------------~~~~~-~~~~PqQ~Ng~-DCGvfv~~~~~~l~~ 149 (186)
T 2oix_A 91 AYHYDSMAQ--KDPQ-QR---YLADMAAYHLGLD-------------YQQTH-EMPIAIQSDGY-SAGDHVLTGIEVLAH 149 (186)
T ss_dssp EEEECCCSS--CCHH-HH---HHHHHHHHHTTCC-------------GGGCE-EECBCCCC--C-CHHHHHHHHHHHHHH
T ss_pred eEEEcCCCC--CCHH-HH---HHHHHHHHHhCCC-------------ccccc-cCCCCCCCCCC-CHHHHHHHHHHHHHH
Confidence 489999998 5544 33 1223444444311 11133 34799999999 999999999999975
Q ss_pred C-------CCCccCcccHHHHHHHHHHHHhcC
Q 033908 81 G-------LKLDFDSSHGHYFRKKIAVDIFPG 105 (109)
Q Consensus 81 ~-------~~~~f~q~~~~~~R~~~~~el~~~ 105 (109)
+ .+..|+++++..+|+.|...|.++
T Consensus 150 ~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~~ 181 (186)
T 2oix_A 150 RVLDGTFDYAGGRDLTDIEPDRGLIRDRLAQA 181 (186)
T ss_dssp HHHHTCTTSTTTTCBTTCCCCHHHHHHHHHCC
T ss_pred HHhhcCccCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 3 234588999999999999888765
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=44.31 E-value=60 Score=22.47 Aligned_cols=23 Identities=22% Similarity=0.246 Sum_probs=18.0
Q ss_pred CCCCCCCCCcchHHHHHHHHHHhc
Q 033908 57 VPQQEPGSGDCGVFMLMFTMYLMF 80 (109)
Q Consensus 57 ~PqQ~N~~~DCGvFvl~~~e~l~~ 80 (109)
.=|=.++- -||+|.|+|..++..
T Consensus 113 sVQcp~Sa-ACGLFC~lFL~aF~~ 135 (204)
T 4ekf_A 113 SVQGPNSA-AAGLFCCMFLHAFAN 135 (204)
T ss_dssp BCSCTTCC-CHHHHHHHHHHHHHH
T ss_pred cccCcCch-hHHHHHHHHHHHHHh
Confidence 34555666 999999999999865
No 8
>1p22_C Beta-catenin, Pro2286; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} PDB: 2g57_A*
Probab=23.19 E-value=19 Score=16.75 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=4.7
Q ss_pred CCCCCcchH
Q 033908 61 EPGSGDCGV 69 (109)
Q Consensus 61 ~N~~~DCGv 69 (109)
+++|.|.|+
T Consensus 9 q~~y~DSGI 17 (26)
T 1p22_C 9 QQSYLDSGI 17 (26)
T ss_pred hcCcccccc
Confidence 344446665
No 9
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=18.04 E-value=64 Score=20.30 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=14.0
Q ss_pred CCCCCCCcchHHHHHHHHHH
Q 033908 59 QQEPGSGDCGVFMLMFTMYL 78 (109)
Q Consensus 59 qQ~N~~~DCGvFvl~~~e~l 78 (109)
.|.... |||+-.+..+-..
T Consensus 10 ~Q~~~~-dcglacLa~i~~~ 28 (156)
T 3k8u_A 10 PQIDTR-DCGPAVLASVAKH 28 (156)
T ss_dssp CCSSTT-CHHHHHHHHHHHH
T ss_pred ECCCCC-CHHHHHHHHHHHH
Confidence 576778 9999977775443
No 10
>1ews_A RK-1 defensin, alpha-defisin; alpha defensin, triple-stranded beta-sheet, antimicrobial protein; NMR {Oryctolagus cuniculus} SCOP: g.9.1.1
Probab=15.59 E-value=14 Score=17.51 Aligned_cols=6 Identities=50% Similarity=1.398 Sum_probs=4.0
Q ss_pred cchHHH
Q 033908 66 DCGVFM 71 (109)
Q Consensus 66 DCGvFv 71 (109)
.||+|-
T Consensus 18 scglfn 23 (32)
T 1ews_A 18 SCGLFN 23 (32)
T ss_dssp CCSSSS
T ss_pred cccccc
Confidence 688763
Done!