BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033909
         (109 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1DJ7|A Chain A, Crystal Structure Of Ferredoxin Thioredoxin Reductase
          Length = 117

 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 43/51 (84%)

Query: 39 SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPC 89
          + K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPC
Sbjct: 7  NNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPC 57


>pdb|2PUK|A Chain A, Crystal Srtucture Of The Binary Complex Between
          Ferredoxin: Thioredoxin Reductase And Thioredoxin M
 pdb|2PUK|E Chain E, Crystal Srtucture Of The Binary Complex Between
          Ferredoxin: Thioredoxin Reductase And Thioredoxin M
 pdb|2PUO|A Chain A, Crystal Srtucture Of The Nem Modified
          Ferredoxin:thioredoxin Reductase
          Length = 109

 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 43/51 (84%)

Query: 39 SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPC 89
          + K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPC
Sbjct: 1  NNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPC 51


>pdb|2PU9|A Chain A, Crystal Srtucture Of The Binary Complex Between
          Ferredoxin: Thioredoxin Reductase And Thioredoxin F
 pdb|2PVO|A Chain A, Crystal Srtucture Of The Ternary Complex Between
          Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
          Reductase
          Length = 110

 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 31/49 (63%), Positives = 42/49 (85%)

Query: 41 KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPC 89
          K++  M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPC
Sbjct: 2  KTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPC 50


>pdb|2PVD|A Chain A, Crystal Srtucture Of The Reduced Ferredoxin:thioredoxin
          Reductase
          Length = 107

 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 30/44 (68%), Positives = 39/44 (88%)

Query: 46 MRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPC 89
          M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPC
Sbjct: 4  MKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPC 47


>pdb|2PVG|A Chain A, Crystal Srtucture Of The Binary Complex Between
          Ferredoxin And Ferredoxin:thioredoxin Reductase
          Length = 108

 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 30/44 (68%), Positives = 39/44 (88%)

Query: 46 MRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPC 89
          M+ F+EQYA+R+DT+FC D SVT+VVI+GLA HK+ LG+PLCPC
Sbjct: 7  MKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPC 50


>pdb|3SDE|A Chain A, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
           Pspc1NONO
          Length = 261

 Score = 26.2 bits (56), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 8   CGSGVSTFICTPRPIIARP 26
           CG G      TPRP+I  P
Sbjct: 157 CGDGAFLLTTTPRPVIVEP 175


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.135    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,682,511
Number of Sequences: 62578
Number of extensions: 83837
Number of successful extensions: 234
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 6
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)