BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033909
(109 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49856|FTRC_SOYBN Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Glycine max GN=FTRC PE=2 SV=1
Length = 144
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 67/89 (75%), Gaps = 4/89 (4%)
Query: 1 MTLQSSLCGSGVSTFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTF 60
MT Q+S V + + TP R R +RAQ EPS+KSVEIMRKFSEQYAR+S T+
Sbjct: 1 MTTQASTFAVAVPS-VATP---FRRHRNPFVVRAQAEPSDKSVEIMRKFSEQYARKSGTY 56
Query: 61 FCVDKSVTSVVIKGLADHKDSLGAPLCPC 89
FCVDK VTSVVIKGLADHKD+LGAPLCPC
Sbjct: 57 FCVDKGVTSVVIKGLADHKDTLGAPLCPC 85
>sp|Q9SJ89|FTRC_ARATH Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Arabidopsis thaliana GN=FTRC PE=2 SV=1
Length = 146
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 65/91 (71%), Gaps = 6/91 (6%)
Query: 1 MTLQSSLCGSGV--STFICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSD 58
M LQ+ C G S TPR R IRA+ EPSEKSVEIMRKFSEQYARRS
Sbjct: 1 MNLQAVSCSFGFLSSPLGVTPRTSFRR----FVIRAKTEPSEKSVEIMRKFSEQYARRSG 56
Query: 59 TFFCVDKSVTSVVIKGLADHKDSLGAPLCPC 89
T+FCVDK VTSVVIKGLA+HKDS GAPLCPC
Sbjct: 57 TYFCVDKGVTSVVIKGLAEHKDSYGAPLCPC 87
>sp|P41349|FTRC2_SPIOL Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Spinacia oleracea PE=2 SV=1
Length = 148
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/63 (80%), Positives = 57/63 (90%)
Query: 27 RPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPL 86
RP I ++VEPS+KSVEIMRKFSEQYAR+S T+FCVDK VTSVVIKGLA+HKDSLGAPL
Sbjct: 27 RPQCVILSKVEPSDKSVEIMRKFSEQYARKSGTYFCVDKGVTSVVIKGLAEHKDSLGAPL 86
Query: 87 CPC 89
CPC
Sbjct: 87 CPC 89
>sp|P41348|FTRC1_SPIOL Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Spinacia oleracea GN=FTRC PE=1 SV=2
Length = 144
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/67 (73%), Positives = 61/67 (91%), Gaps = 1/67 (1%)
Query: 24 ARPRPVTQ-IRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSL 82
A PR ++ IRAQ +PS+KS+E+MRKFSEQ+ R+SDT+FCVDKSVT+VVIKGLADH+D+L
Sbjct: 19 ASPRRFSRVIRAQADPSDKSMEVMRKFSEQFCRKSDTYFCVDKSVTAVVIKGLADHRDTL 78
Query: 83 GAPLCPC 89
GAPLCPC
Sbjct: 79 GAPLCPC 85
>sp|P41347|FTRC_MAIZE Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Zea mays GN=FTRC PE=2 SV=1
Length = 152
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 57/70 (81%), Gaps = 5/70 (7%)
Query: 24 ARPRPVTQIRAQVE----PSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHK 79
RPR +RAQ ++KSVE+MRKFSEQYARRS+TFFC DK+VT+VVIKGLADH+
Sbjct: 25 GRPRRCA-VRAQAAGADASNDKSVEVMRKFSEQYARRSNTFFCADKTVTAVVIKGLADHR 83
Query: 80 DSLGAPLCPC 89
D+LGAPLCPC
Sbjct: 84 DTLGAPLCPC 93
>sp|Q6K471|FTRC_ORYSJ Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic
OS=Oryza sativa subsp. japonica GN=Os09g0249900 PE=2
SV=1
Length = 146
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/49 (87%), Positives = 47/49 (95%)
Query: 41 KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPC 89
KS+EIMRKFSEQYARRS+TFFC +KSVT+VVIKGLADHKD LGAPLCPC
Sbjct: 39 KSLEIMRKFSEQYARRSNTFFCSEKSVTAVVIKGLADHKDQLGAPLCPC 87
>sp|Q1XDA1|FTRC_PORYE Ferredoxin-thioredoxin reductase, catalytic chain OS=Porphyra
yezoensis GN=ftrB PE=3 SV=2
Length = 116
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 41 KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPC 89
+++E MRKFSE YA+R+ TFFC+D SVT+VVI+GLA HKD GAPLCPC
Sbjct: 11 ENLEAMRKFSETYAKRTGTFFCIDSSVTAVVIEGLARHKDQYGAPLCPC 59
>sp|P51386|FTRC_PORPU Ferredoxin-thioredoxin reductase, catalytic chain OS=Porphyra
purpurea GN=ftrB PE=3 SV=1
Length = 118
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 40/48 (83%)
Query: 42 SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPC 89
++E MRKFSE YA+R+ TFFC D SVT+VVI+GLA HKD GAPLCPC
Sbjct: 12 NLEAMRKFSETYAKRTGTFFCADNSVTAVVIEGLARHKDKYGAPLCPC 59
>sp|O78461|FTRC_GUITH Ferredoxin-thioredoxin reductase, catalytic chain OS=Guillardia
theta GN=ftrB PE=3 SV=1
Length = 102
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 40/54 (74%)
Query: 36 VEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPC 89
+E S M+KF+E YA+R++TFFC D S+T +V++GLA HKD GAPLCPC
Sbjct: 2 IESYSDSFVAMKKFAETYAKRTNTFFCNDLSITQIVLEGLAKHKDEYGAPLCPC 55
>sp|Q9TM25|FTRC_CYACA Ferredoxin-thioredoxin reductase, catalytic chain OS=Cyanidium
caldarium GN=ftrB PE=3 SV=1
Length = 111
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 41/49 (83%)
Query: 41 KSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPC 89
K++E + KF+E YA+ S T+FC+D+S+T++VI+GLA HKD GAPLCPC
Sbjct: 6 KNLESLHKFAEAYAKLSRTYFCIDQSITALVIEGLARHKDDYGAPLCPC 54
>sp|P46224|CH60_PYRSA 60 kDa chaperonin, chloroplastic OS=Pyrenomonas salina GN=groL
PE=3 SV=1
Length = 585
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 46 MRKFSEQYARRSD-TFFCVDKSVTSVVIKGLADHKDSLGA 84
MR+FSE Y ++ TFFC + S+T+VVI+GL HK+ GA
Sbjct: 1 MRRFSETYGQKKQITFFCSNLSITAVVIEGLLKHKEEYGA 40
>sp|Q608Y9|NUON_METCA NADH-quinone oxidoreductase subunit N OS=Methylococcus capsulatus
(strain ATCC 33009 / NCIMB 11132 / Bath) GN=nuoN PE=3
SV=1
Length = 493
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 18 TPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYARRSDTFFCV 63
TP P PVT A V + ++R F+ +A RS+TF CV
Sbjct: 224 TPDVYQGAPTPVTAFLATVSKASVFALLLRFFTAAHAERSETFLCV 269
>sp|P47715|RPOB_MYCGA DNA-directed RNA polymerase subunit beta OS=Mycoplasma gallisepticum
(strain R(low / passage 15 / clone 2)) GN=rpoB PE=3 SV=2
Length = 1390
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 49 FSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLG 83
F ++ A + DT F ++KS T +IK L +H S+G
Sbjct: 1120 FDKKLADQLDTVFGLEKSKTQSLIKNLVEHMKSIG 1154
>sp|Q88BK3|DNAA_PSESM Chromosomal replication initiator protein DnaA OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=dnaA PE=3 SV=1
Length = 511
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 16 ICTPRPIIARPRPVTQIRAQVEPSEKSVEIMRKFSEQYA 54
+ P P++A P PV + EPS S + M S Q A
Sbjct: 117 MAVPAPMVAAPVPVHNVATHDEPSRDSFDPMAGASSQQA 155
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,108,287
Number of Sequences: 539616
Number of extensions: 1146135
Number of successful extensions: 3743
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3728
Number of HSP's gapped (non-prelim): 16
length of query: 109
length of database: 191,569,459
effective HSP length: 77
effective length of query: 32
effective length of database: 150,019,027
effective search space: 4800608864
effective search space used: 4800608864
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)