Query 033909
Match_columns 109
No_of_seqs 112 out of 177
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 12:44:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dj7_A Ferredoxin thioredoxin 100.0 4.9E-29 1.7E-33 180.0 7.2 68 35-103 3-70 (117)
2 1u2m_A Histone-like protein HL 70.3 5.1 0.00017 27.3 3.9 37 39-75 95-142 (143)
3 2kvo_A Photosystem II reaction 56.2 8.1 0.00028 27.7 2.8 28 38-65 85-112 (120)
4 1cyi_A Cytochrome C6, cytochro 54.0 14 0.00046 22.1 3.3 25 37-61 66-90 (90)
5 1qpz_A PURA, protein (purine n 49.5 23 0.0008 25.9 4.5 42 45-86 30-91 (340)
6 2cly_C ATP synthase coupling f 48.3 31 0.001 22.9 4.5 43 42-85 12-54 (77)
7 2cpg_A REPA protein, transcrip 47.5 18 0.00061 19.7 2.8 31 44-77 11-41 (45)
8 3kjx_A Transcriptional regulat 47.1 21 0.00071 26.2 3.9 43 45-87 40-102 (344)
9 3vu7_H DNA repair protein REV1 43.1 56 0.0019 22.8 5.5 40 36-81 53-92 (124)
10 3dbi_A Sugar-binding transcrip 42.9 17 0.00059 26.5 2.9 47 44-90 32-100 (338)
11 2k9i_A Plasmid PRN1, complete 42.7 18 0.0006 20.4 2.3 16 44-59 18-33 (55)
12 2hsg_A Glucose-resistance amyl 40.1 42 0.0014 24.3 4.6 44 44-87 31-94 (332)
13 1jx6_A LUXP protein; protein-l 39.3 35 0.0012 24.7 4.1 43 44-86 16-77 (342)
14 3jvd_A Transcriptional regulat 38.8 21 0.0007 26.3 2.8 47 44-90 35-101 (333)
15 1th8_A Anti-sigma F factor; SP 38.2 53 0.0018 21.0 4.4 46 39-85 12-57 (145)
16 3e3m_A Transcriptional regulat 36.7 22 0.00075 26.3 2.6 44 44-87 41-104 (355)
17 2pyq_A Uncharacterized protein 35.3 60 0.0021 22.9 4.6 32 42-75 5-36 (114)
18 3h5o_A Transcriptional regulat 34.0 22 0.00074 26.1 2.2 46 44-89 33-98 (339)
19 2o20_A Catabolite control prot 33.8 27 0.00093 25.4 2.7 44 44-87 34-97 (332)
20 2l8n_A Transcriptional repress 33.1 24 0.00083 21.6 2.0 20 44-63 38-57 (67)
21 3ctp_A Periplasmic binding pro 32.0 31 0.0011 25.1 2.7 46 44-89 31-96 (330)
22 2ysk_A Hypothetical protein TT 32.0 66 0.0023 22.4 4.4 32 38-72 8-39 (145)
23 1jye_A Lactose operon represso 32.0 30 0.001 25.5 2.7 44 44-87 32-95 (349)
24 3fni_A Putative diflavin flavo 31.3 45 0.0015 22.8 3.4 24 33-56 123-146 (159)
25 3sqn_A Conserved domain protei 30.8 42 0.0014 27.4 3.6 37 43-83 293-329 (485)
26 1c6r_A Cytochrome C6; electron 29.8 55 0.0019 19.1 3.2 23 37-59 67-89 (89)
27 3hly_A Flavodoxin-like domain; 28.9 51 0.0018 22.3 3.3 24 33-56 118-141 (161)
28 1m5a_B Insulin B chain; alpha 28.3 57 0.002 18.1 2.8 18 47-64 12-29 (30)
29 1ls9_A Cytochrome C6; omega lo 28.2 60 0.0021 19.2 3.2 23 37-59 69-91 (91)
30 3bil_A Probable LACI-family tr 28.1 39 0.0013 25.0 2.8 46 44-89 37-102 (348)
31 1f1f_A Cytochrome C6; heme, pr 27.7 63 0.0022 18.8 3.2 22 37-59 68-89 (89)
32 3iz6_M 40S ribosomal protein S 27.4 39 0.0013 24.6 2.6 47 36-82 57-114 (152)
33 2fqc_A Conotoxin PL14A; alpha- 26.3 13 0.00045 20.2 -0.1 10 81-90 16-25 (26)
34 2hza_A Nickel-responsive regul 25.5 69 0.0024 21.9 3.5 34 44-79 10-44 (133)
35 1uxc_A FRUR (1-57), fructose r 25.5 31 0.0011 21.0 1.5 19 45-63 33-51 (65)
36 1mkf_A M3; decoy receptor, PSI 24.4 17 0.00059 30.0 0.2 17 82-98 332-348 (382)
37 3cyv_A URO-D, UPD, uroporphyri 23.8 82 0.0028 24.0 4.0 20 45-64 307-326 (354)
38 1j93_A UROD, uroporphyrinogen 22.8 1E+02 0.0035 23.4 4.3 42 42-84 308-353 (353)
39 2lmt_A Calmodulin-related prot 22.6 58 0.002 20.8 2.5 26 35-60 1-27 (148)
40 2oie_A RS21-C6; helix, hydrola 21.5 62 0.0021 21.0 2.5 42 33-75 6-49 (111)
41 1oxw_A Patatin; alpha/beta cla 21.4 2E+02 0.007 22.5 5.9 44 37-80 320-365 (373)
42 2kmf_A Photosystem II 11 kDa p 21.3 1.2E+02 0.004 21.2 4.0 46 40-85 45-90 (115)
43 5nul_A Flavodoxin; electron tr 20.9 72 0.0025 20.4 2.7 21 34-55 117-137 (138)
44 3dr0_A Cytochrome C6; photosyn 20.9 1E+02 0.0036 17.8 3.2 23 37-59 71-93 (93)
45 2xzm_M RPS18E; ribosome, trans 20.7 25 0.00086 25.7 0.4 33 36-68 59-93 (155)
46 4ay7_A Methylcobalamin\: coenz 20.6 58 0.002 24.9 2.5 33 32-64 292-324 (348)
No 1
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Probab=99.95 E-value=4.9e-29 Score=179.99 Aligned_cols=68 Identities=46% Similarity=0.810 Sum_probs=61.6
Q ss_pred cCCCCHHHHHHHHHHHHHHhhhcCceeccChhhHHHHHHHHHHhHHhhCCCCCCCccCcchhhhhhhcC
Q 033909 35 QVEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAPLCPCIMTTKLLKLSRASG 103 (109)
Q Consensus 35 ~~~~see~lE~m~~f~ekyAek~Gy~fNPD~evt~~VieGLa~NK~rYG~~~CPCRl~~g~re~dr~~~ 103 (109)
+++++++++++|++|+++||+++||+||||+++|+.|++||++||++||+||||||++ |++++|+..+
T Consensus 3 ~~~~~~~~~e~~~~f~ek~ae~~G~~~NpD~evt~~vi~GLa~nk~~yG~~~CPCR~~-gdke~d~~~~ 70 (117)
T 1dj7_A 3 SDTQNNKTLAAMKNFAEQYAKRTDTYFCSDLSVTAVVIEGLARHKEELGSPLCPCRHY-EDKEAEVKNT 70 (117)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCBCBSSHHHHHHHHHHHHHHHHHHSSCBCSSSCC-SCHHHHHHHC
T ss_pred CCcccHHHHHHHHHHHHHHHHHhCCEECCCHHHHHHHHHHHHHHHHHhCCCCCCCcCC-CChhhhcccC
Confidence 5789999999999999999999999999999999999999999999999999999999 8988887644
No 2
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=70.26 E-value=5.1 Score=27.27 Aligned_cols=37 Identities=22% Similarity=0.163 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHHhhhcCce----------eccCh-hhHHHHHHHH
Q 033909 39 SEKSVEIMRKFSEQYARRSDTF----------FCVDK-SVTSVVIKGL 75 (109)
Q Consensus 39 see~lE~m~~f~ekyAek~Gy~----------fNPD~-evt~~VieGL 75 (109)
...-.+++.+.++.||+..||- .+|.- ++|+.|++.|
T Consensus 95 ~~~i~~~i~~ai~~vak~~gy~~Vld~~~vly~~~~~~DIT~~Vi~~L 142 (143)
T 1u2m_A 95 RGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQV 142 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEEGGGEEEECTTSCBCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEEECCceeEeCCCcCchHHHHHHHh
Confidence 3455667888999999999994 35777 9999998765
No 3
>2kvo_A Photosystem II reaction center PSB28 protein; membrane, photosynthesis, thylakoid, structural genom 2, protein structure initiative; NMR {Synechocystis SP}
Probab=56.18 E-value=8.1 Score=27.70 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHHhhhcCceeccCh
Q 033909 38 PSEKSVEIMRKFSEQYARRSDTFFCVDK 65 (109)
Q Consensus 38 ~see~lE~m~~f~ekyAek~Gy~fNPD~ 65 (109)
.++++.+.+.+|.++||+.+|.-|...+
T Consensus 85 ~s~~~WdRFMRFMeRYA~~Ngl~f~k~~ 112 (120)
T 2kvo_A 85 NSQPEWDRFMRFMERYGAENGLGFSKSE 112 (120)
T ss_dssp CSSHHHHHHHHHHHHHHHHCCSSSCSTT
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCc
Confidence 5889999999999999999998887543
No 4
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=54.01 E-value=14 Score=22.10 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCcee
Q 033909 37 EPSEKSVEIMRKFSEQYARRSDTFF 61 (109)
Q Consensus 37 ~~see~lE~m~~f~ekyAek~Gy~f 61 (109)
..++++++.+-.|+.....+.||.|
T Consensus 66 ~ls~~ei~~l~~yl~~~~~~~~W~~ 90 (90)
T 1cyi_A 66 RLSEEEIQAVAEYVFKQATDAAWKY 90 (90)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTCCC-
T ss_pred cCCHHHHHHHHHHHHhcccccCCCC
Confidence 4799999999999999999888865
No 5
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=49.50 E-value=23 Score=25.88 Aligned_cols=42 Identities=10% Similarity=-0.034 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhhcCceecc--------------------ChhhHHHHHHHHHHhHHhhCCCC
Q 033909 45 IMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPL 86 (109)
Q Consensus 45 ~m~~f~ekyAek~Gy~fNP--------------------D~evt~~VieGLa~NK~rYG~~~ 86 (109)
++++.+.+.|++.||.-|+ +..+...+++|+..--.++||..
T Consensus 30 ~tr~rV~~~a~~lgY~pn~~ar~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~ 91 (340)
T 1qpz_A 30 ETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTL 91 (340)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHTCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhCCCCCHHHHhhccCCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEE
Confidence 4555577777777876442 34567789999999888999865
No 6
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=48.33 E-value=31 Score=22.94 Aligned_cols=43 Identities=14% Similarity=0.106 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhhhcCceeccChhhHHHHHHHHHHhHHhhCCC
Q 033909 42 SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAP 85 (109)
Q Consensus 42 ~lE~m~~f~ekyAek~Gy~fNPD~evt~~VieGLa~NK~rYG~~ 85 (109)
=++++|++-.|-+. .|=...+.+++-..+-+-|.+-...||.-
T Consensus 12 FldKIREYk~Ks~~-~G~lVD~~Pe~~kel~~el~kL~~~YGgg 54 (77)
T 2cly_C 12 FVDKIREYRTKRQT-SGGPVDAGPEYQQDLDRELFKLKQMYGKA 54 (77)
T ss_dssp HHHHHHHHHHHHTC-CSSSSSCCTHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhccc-CCCCCCCCHHHHHHHHHHHHHHHHHHCcc
Confidence 36788888766653 48899999999999999999999999964
No 7
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=47.49 E-value=18 Score=19.69 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhcCceeccChhhHHHHHHHHHH
Q 033909 44 EIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLAD 77 (109)
Q Consensus 44 E~m~~f~ekyAek~Gy~fNPD~evt~~VieGLa~ 77 (109)
+++.+.++++|++.|. +-.+++...|+..+.
T Consensus 11 ~~l~~~Ld~~a~~~g~---srS~~ir~ai~~~l~ 41 (45)
T 2cpg_A 11 ESVLENLEKMAREMGL---SKSAMISVALENYKK 41 (45)
T ss_dssp HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCc---CHHHHHHHHHHHHHH
Confidence 3456778899999995 344555544444443
No 8
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=47.07 E-value=21 Score=26.21 Aligned_cols=43 Identities=12% Similarity=-0.020 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhhcCceecc--------------------ChhhHHHHHHHHHHhHHhhCCCCC
Q 033909 45 IMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPLC 87 (109)
Q Consensus 45 ~m~~f~ekyAek~Gy~fNP--------------------D~evt~~VieGLa~NK~rYG~~~C 87 (109)
++++.+.+.|++.||.-|+ +..+...+++|+..--.++||..=
T Consensus 40 ~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~ 102 (344)
T 3kjx_A 40 ATRARVLAAAKELGYVPNKIAGALASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPV 102 (344)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEE
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEE
Confidence 4455577888899998765 234678899999999999999753
No 9
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=43.08 E-value=56 Score=22.79 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCceeccChhhHHHHHHHHHHhHHh
Q 033909 36 VEPSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDS 81 (109)
Q Consensus 36 ~~~see~lE~m~~f~ekyAek~Gy~fNPD~evt~~VieGLa~NK~r 81 (109)
..|.+++++.+.+|+.+.++. -|-|-+..|++=|-+.-++
T Consensus 53 ~~P~~~DV~~l~~yL~~lVee------k~Lek~~~vlk~l~rlv~~ 92 (124)
T 3vu7_H 53 SDPMEEDILQVVKYCTDLIEE------KDLEKLDLVIKYMKRLMQQ 92 (124)
T ss_dssp CSCCHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHhhc------ccHHHHHHHHHHHHHHHhc
Confidence 458888888888888888863 4677777777777665444
No 10
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=42.95 E-value=17 Score=26.51 Aligned_cols=47 Identities=13% Similarity=-0.101 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhhcCceecc----------------------ChhhHHHHHHHHHHhHHhhCCCCCCCc
Q 033909 44 EIMRKFSEQYARRSDTFFCV----------------------DKSVTSVVIKGLADHKDSLGAPLCPCI 90 (109)
Q Consensus 44 E~m~~f~ekyAek~Gy~fNP----------------------D~evt~~VieGLa~NK~rYG~~~CPCR 90 (109)
+++++.+.+.|++.||.-|+ +..+...+++|+..--.++||..--|.
T Consensus 32 ~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 100 (338)
T 3dbi_A 32 QETKDRVFQAVEESGYRPNLLARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD 100 (338)
T ss_dssp ----------------------------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHhhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEe
Confidence 34566677788888886553 345778899999999999998754443
No 11
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=42.67 E-value=18 Score=20.37 Aligned_cols=16 Identities=6% Similarity=-0.012 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhhcCc
Q 033909 44 EIMRKFSEQYARRSDT 59 (109)
Q Consensus 44 E~m~~f~ekyAek~Gy 59 (109)
+++++.++.+|++.|.
T Consensus 18 ~el~~~l~~~a~~~g~ 33 (55)
T 2k9i_A 18 QEWHDRLMEIAKEKNL 33 (55)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3456668889999996
No 12
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=40.09 E-value=42 Score=24.34 Aligned_cols=44 Identities=11% Similarity=-0.030 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhhcCceec------------------c--ChhhHHHHHHHHHHhHHhhCCCCC
Q 033909 44 EIMRKFSEQYARRSDTFFC------------------V--DKSVTSVVIKGLADHKDSLGAPLC 87 (109)
Q Consensus 44 E~m~~f~ekyAek~Gy~fN------------------P--D~evt~~VieGLa~NK~rYG~~~C 87 (109)
+++++.+.+.|++.||.-| | +..+...+++|+..--.++||..=
T Consensus 31 ~~tr~rV~~aa~~lgY~pn~~ar~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~ 94 (332)
T 2hsg_A 31 PSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNII 94 (332)
T ss_dssp HHHHHHHHHHHHHHTCCSCHHHHHHTTC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHHHhCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEE
Confidence 3455667778888888655 2 234677899999998889998653
No 13
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=39.33 E-value=35 Score=24.71 Aligned_cols=43 Identities=7% Similarity=-0.048 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhhcCceec----------------cC---hhhHHHHHHHHHHhHHhhCCCC
Q 033909 44 EIMRKFSEQYARRSDTFFC----------------VD---KSVTSVVIKGLADHKDSLGAPL 86 (109)
Q Consensus 44 E~m~~f~ekyAek~Gy~fN----------------PD---~evt~~VieGLa~NK~rYG~~~ 86 (109)
+++++.+.+.|++.||.-| |+ ..+...+++|+..--.++|+.+
T Consensus 16 ~~tr~rV~~aa~elgY~pn~~Ar~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~ 77 (342)
T 1jx6_A 16 PEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINY 77 (342)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCSSCCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHhcCCCCccccccCCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeE
Confidence 5678888899999999655 33 4577889999999989999853
No 14
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=38.84 E-value=21 Score=26.35 Aligned_cols=47 Identities=9% Similarity=-0.002 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhhcCceecc--------------------ChhhHHHHHHHHHHhHHhhCCCCCCCc
Q 033909 44 EIMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPLCPCI 90 (109)
Q Consensus 44 E~m~~f~ekyAek~Gy~fNP--------------------D~evt~~VieGLa~NK~rYG~~~CPCR 90 (109)
+++++.+.+.|++.||.-|+ +..+...+++|+..--.++||..--|.
T Consensus 35 ~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 101 (333)
T 3jvd_A 35 PQTREKVQAAAKELNYVPNQLAKALREHRSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAE 101 (333)
T ss_dssp -----------------------------CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHhhcCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 44556677788888887554 335778899999999999998765443
No 15
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=38.15 E-value=53 Score=20.96 Aligned_cols=46 Identities=9% Similarity=0.052 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHHhhhcCceeccChhhHHHHHHHHHHhHHhhCCC
Q 033909 39 SEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAP 85 (109)
Q Consensus 39 see~lE~m~~f~ekyAek~Gy~fNPD~evt~~VieGLa~NK~rYG~~ 85 (109)
..+.+...+.++..+++..+.-. .|......++.-|+.|--+||..
T Consensus 12 ~~~~~~~~r~~~~~~~~~~~~~~-~~~~~l~~il~~l~~Nai~h~~~ 57 (145)
T 1th8_A 12 RSENESFARVTVAAFVAQLDPTM-DELTEIKTVVSEAVTNAIIHGYN 57 (145)
T ss_dssp CTTHHHHHHHHHHHHHGGGCCCH-HHHHHHHHHHHHHHHHHHHTTST
T ss_pred chhhHHHHHHHHHHHHhccCcch-hhHHHHHHHHHHHHHHHHHHhcC
Confidence 34567888999999998877644 46778889999999999999975
No 16
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=36.68 E-value=22 Score=26.30 Aligned_cols=44 Identities=11% Similarity=-0.019 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhhcCceecc--------------------ChhhHHHHHHHHHHhHHhhCCCCC
Q 033909 44 EIMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPLC 87 (109)
Q Consensus 44 E~m~~f~ekyAek~Gy~fNP--------------------D~evt~~VieGLa~NK~rYG~~~C 87 (109)
+++++.+.+.|++.||.-|+ +..+...+++|+..--.++||..=
T Consensus 41 ~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~ 104 (355)
T 3e3m_A 41 SETRERILKVVKDMNYVPDQVAGSLTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLL 104 (355)
T ss_dssp ------------------------------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHhhhcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEE
Confidence 44566677788888887664 224667899999999999999753
No 17
>2pyq_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.50A {Jannaschia SP} SCOP: a.279.1.1
Probab=35.30 E-value=60 Score=22.94 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhhcCceeccChhhHHHHHHHH
Q 033909 42 SVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGL 75 (109)
Q Consensus 42 ~lE~m~~f~ekyAek~Gy~fNPD~evt~~VieGL 75 (109)
.-|.|-++++.+-++-| .+||++++..|..||
T Consensus 5 ~de~ia~Y~~d~k~k~~--~~~D~~ll~kv~~~l 36 (114)
T 2pyq_A 5 RDDLIAQYADDLRNKCG--MEPDMALLEKVTKGC 36 (114)
T ss_dssp HHHHHHHHHHHHHHTTC--CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHhc
Confidence 34555566666544544 599999999999987
No 18
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=33.96 E-value=22 Score=26.06 Aligned_cols=46 Identities=15% Similarity=0.052 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhhcCceecc--------------------ChhhHHHHHHHHHHhHHhhCCCCCCC
Q 033909 44 EIMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPLCPC 89 (109)
Q Consensus 44 E~m~~f~ekyAek~Gy~fNP--------------------D~evt~~VieGLa~NK~rYG~~~CPC 89 (109)
+++++.+.+.|++.||.-|+ +..+...+++|+..--.++||..=-|
T Consensus 33 ~~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 98 (339)
T 3h5o_A 33 EQLREKVMQAVDALAYVPSRSASTLASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIG 98 (339)
T ss_dssp ------------------------------CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHhhhcCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 44555677788888887663 23466789999999999999876443
No 19
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=33.76 E-value=27 Score=25.43 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhhcCceecc--------------------ChhhHHHHHHHHHHhHHhhCCCCC
Q 033909 44 EIMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPLC 87 (109)
Q Consensus 44 E~m~~f~ekyAek~Gy~fNP--------------------D~evt~~VieGLa~NK~rYG~~~C 87 (109)
+++++.+.+.|++.||.-|+ +..+...+++|+..--.++||..-
T Consensus 34 ~~tr~rV~~~a~~lgY~pn~~ar~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~ 97 (332)
T 2o20_A 34 EKTRQKVLEAIAELDYRPNAVARGLASKRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMI 97 (332)
T ss_dssp ----------------------------CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHHhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEE
Confidence 44555666777777776543 234677899999999899998753
No 20
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=33.06 E-value=24 Score=21.60 Aligned_cols=20 Identities=20% Similarity=0.056 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhhcCceecc
Q 033909 44 EIMRKFSEQYARRSDTFFCV 63 (109)
Q Consensus 44 E~m~~f~ekyAek~Gy~fNP 63 (109)
+++++.+.+.|++.||..|.
T Consensus 38 ~~t~~rV~~~a~~lgY~pn~ 57 (67)
T 2l8n_A 38 QATRNRVEKAAREVGYLPQP 57 (67)
T ss_dssp HHHHHHHHHHHHHHCCCC--
T ss_pred HHHHHHHHHHHHHhCCCccH
Confidence 34455677888999998664
No 21
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=31.98 E-value=31 Score=25.11 Aligned_cols=46 Identities=11% Similarity=0.063 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhcCceecc--------------------ChhhHHHHHHHHHHhHHhhCCCCCCC
Q 033909 44 EIMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPLCPC 89 (109)
Q Consensus 44 E~m~~f~ekyAek~Gy~fNP--------------------D~evt~~VieGLa~NK~rYG~~~CPC 89 (109)
+++++.+.+.|++.||.-|+ +..+...+++|+..--.++||..--|
T Consensus 31 ~~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~ 96 (330)
T 3ctp_A 31 EDAREKIQKVVDELNYTPNALARAMFTKNSKTIGLMVPNISNPFFNQMASVIEEYAKNKGYTLFLC 96 (330)
T ss_dssp -----------------------------CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHHhhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCEEEEE
Confidence 34455566677777776543 23467789999998888999875433
No 22
>2ysk_A Hypothetical protein TTHA1432; conserved hypothetical, NPPSFA, national project on protein structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=31.97 E-value=66 Score=22.41 Aligned_cols=32 Identities=6% Similarity=0.121 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHhhhcCceeccChhhHHHHH
Q 033909 38 PSEKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVI 72 (109)
Q Consensus 38 ~see~lE~m~~f~ekyAek~Gy~fNPD~evt~~Vi 72 (109)
.++...++...|++++++..|| ||++....++
T Consensus 8 ~~~~~~~~~~~fl~~V~~~~~~---~~~~~A~~~~ 39 (145)
T 2ysk_A 8 VFDRTLHKTHAWLKAIMEELGT---EDRHKAYLAL 39 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---CCHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHhCC---CCHHHHHHHH
Confidence 5778899999999999999998 5664444333
No 23
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=31.96 E-value=30 Score=25.51 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhhcCceecc------------------C--hhhHHHHHHHHHHhHHhhCCCCC
Q 033909 44 EIMRKFSEQYARRSDTFFCV------------------D--KSVTSVVIKGLADHKDSLGAPLC 87 (109)
Q Consensus 44 E~m~~f~ekyAek~Gy~fNP------------------D--~evt~~VieGLa~NK~rYG~~~C 87 (109)
+++++.+.+.|++.||.-|+ | ..+...+++|+..--.++||..=
T Consensus 32 ~~tr~rV~~~a~~lgY~pn~~ar~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~ 95 (349)
T 1jye_A 32 AKTREKVEAAMAELNYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAILSRADQLGASVV 95 (349)
T ss_dssp ------------------------------CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHhhcCCCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEE
Confidence 34555677777778876553 2 24667899999998899998653
No 24
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=31.35 E-value=45 Score=22.76 Aligned_cols=24 Identities=13% Similarity=0.303 Sum_probs=19.4
Q ss_pred eccCCCCHHHHHHHHHHHHHHhhh
Q 033909 33 RAQVEPSEKSVEIMRKFSEQYARR 56 (109)
Q Consensus 33 ~~~~~~see~lE~m~~f~ekyAek 56 (109)
.....|.+++++++++|.++++++
T Consensus 123 ~~~~~P~~~dl~~~~~~g~~la~~ 146 (159)
T 3fni_A 123 RIKQTPTENTYKLCEEAGTDLGQW 146 (159)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHH
Confidence 445668899999999999888765
No 25
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=30.78 E-value=42 Score=27.41 Aligned_cols=37 Identities=5% Similarity=0.005 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhhcCceeccChhhHHHHHHHHHHhHHhhC
Q 033909 43 VEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLG 83 (109)
Q Consensus 43 lE~m~~f~ekyAek~Gy~fNPD~evt~~VieGLa~NK~rYG 83 (109)
.+.+.++++++.+..|+-|+-|.+ |++||+.|--+||
T Consensus 293 ~~~~~~~i~~~~~~~~i~~~~d~~----L~~~L~lHliky~ 329 (485)
T 3sqn_A 293 RKSLQQFVTNLSTEEARPDLIQTN----LLDNLLLLFIKYT 329 (485)
T ss_dssp HHHHHHHHHHHHHHHTCGGGGGST----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHHhc
Confidence 367888999999999999999987 5666666667777
No 26
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=29.76 E-value=55 Score=19.14 Aligned_cols=23 Identities=4% Similarity=0.056 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCc
Q 033909 37 EPSEKSVEIMRKFSEQYARRSDT 59 (109)
Q Consensus 37 ~~see~lE~m~~f~ekyAek~Gy 59 (109)
..++++++.+-.|+....+..||
T Consensus 67 ~ls~~ei~~l~~yl~~~~~~~~W 89 (89)
T 1c6r_A 67 TLDDDEIAAVAAYVYDQASGDKW 89 (89)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHHHHHccCCCC
Confidence 47999999999999988876665
No 27
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=28.92 E-value=51 Score=22.31 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=18.9
Q ss_pred eccCCCCHHHHHHHHHHHHHHhhh
Q 033909 33 RAQVEPSEKSVEIMRKFSEQYARR 56 (109)
Q Consensus 33 ~~~~~~see~lE~m~~f~ekyAek 56 (109)
.....|.+++++++++|.++++++
T Consensus 118 ~~~~~P~~~dl~~~~~~g~~la~~ 141 (161)
T 3hly_A 118 RVKDQPTEAIYQQCEESGTDLGQW 141 (161)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHH
Confidence 334568889999999999888865
No 28
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=28.27 E-value=57 Score=18.13 Aligned_cols=18 Identities=6% Similarity=-0.047 Sum_probs=14.4
Q ss_pred HHHHHHHhhhcCceeccC
Q 033909 47 RKFSEQYARRSDTFFCVD 64 (109)
Q Consensus 47 ~~f~ekyAek~Gy~fNPD 64 (109)
-+-+.-++...|++|+|+
T Consensus 12 VdaL~~vCgdRGF~~~p~ 29 (30)
T 1m5a_B 12 VEALYLVCGERGFFYTPK 29 (30)
T ss_dssp HHHHHHHHGGGCEEECCC
T ss_pred HHHHHHHhccCccccCCC
Confidence 344667899999999996
No 29
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=28.16 E-value=60 Score=19.19 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCc
Q 033909 37 EPSEKSVEIMRKFSEQYARRSDT 59 (109)
Q Consensus 37 ~~see~lE~m~~f~ekyAek~Gy 59 (109)
..++++++.+-.|+.......||
T Consensus 69 ~ls~~ei~~l~~yl~~~~~~~~W 91 (91)
T 1ls9_A 69 RLDEDDIEAVSNYVYDQAVNSKW 91 (91)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTCC
T ss_pred hCCHHHHHHHHHHHHHhccccCC
Confidence 47999999999999988876655
No 30
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=28.14 E-value=39 Score=24.98 Aligned_cols=46 Identities=9% Similarity=-0.038 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhhcCceecc--------------------ChhhHHHHHHHHHHhHHhhCCCCCCC
Q 033909 44 EIMRKFSEQYARRSDTFFCV--------------------DKSVTSVVIKGLADHKDSLGAPLCPC 89 (109)
Q Consensus 44 E~m~~f~ekyAek~Gy~fNP--------------------D~evt~~VieGLa~NK~rYG~~~CPC 89 (109)
+++++.+.+.|++.||.-|+ +..+...+++|+..--.++||..=-|
T Consensus 37 ~~tr~rV~~aa~~lgY~pn~~ar~l~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 102 (348)
T 3bil_A 37 ASTRERIQQLASDLGYRANAQARALRSSRSNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIIT 102 (348)
T ss_dssp -------------------------------CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHhCCCcCHHHHhhhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEE
Confidence 34555566677777776553 23466789999998888999875433
No 31
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=27.70 E-value=63 Score=18.80 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCc
Q 033909 37 EPSEKSVEIMRKFSEQYARRSDT 59 (109)
Q Consensus 37 ~~see~lE~m~~f~ekyAek~Gy 59 (109)
..++++++.+-.|+....++ ||
T Consensus 68 ~ls~~ei~~l~~yl~~~~~~-~w 89 (89)
T 1f1f_A 68 RLSPLQIEDVAAYVVDQAEK-GW 89 (89)
T ss_dssp TSCHHHHHHHHHHHHHHHHH-TC
T ss_pred CCCHHHHHHHHHHHHHHhhc-CC
Confidence 38999999999999988765 55
No 32
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=27.40 E-value=39 Score=24.56 Aligned_cols=47 Identities=19% Similarity=0.144 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHHHhhh--cCceeccChhhH---------HHHHHHHHHhHHhh
Q 033909 36 VEPSEKSVEIMRKFSEQYARR--SDTFFCVDKSVT---------SVVIKGLADHKDSL 82 (109)
Q Consensus 36 ~~~see~lE~m~~f~ekyAek--~Gy~fNPD~evt---------~~VieGLa~NK~rY 82 (109)
-+.++++++++.+.++..++- =.|+||-.+++. .+|-.-+..|-+++
T Consensus 57 g~Lt~~ei~~l~~~i~~~~~~~ip~w~lNr~kD~~~G~~~~li~~dL~~~~~~dI~RL 114 (152)
T 3iz6_M 57 GELSAEEMDRLMAVVHNPRQFKVPDWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERL 114 (152)
T ss_dssp TTSCHHHHHHHHHHHHSCSSCCCCCCSCSCCCSCCCCSCCTTCTHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhhcccCcchhhhhhhcccCCcceeeechhHHHHHHHHhHHHH
Confidence 468999999999998754322 268999876654 34555555554443
No 33
>2fqc_A Conotoxin PL14A; alpha-helix, disulfide bonds; NMR {Synthetic}
Probab=26.31 E-value=13 Score=20.21 Aligned_cols=10 Identities=30% Similarity=0.810 Sum_probs=7.8
Q ss_pred hhCCCCCCCc
Q 033909 81 SLGAPLCPCI 90 (109)
Q Consensus 81 rYG~~~CPCR 90 (109)
-.-||+|-||
T Consensus 16 GH~YPfC~Cr 25 (26)
T 2fqc_A 16 GHKYPFCHCR 25 (26)
T ss_dssp GGTCGGGCCC
T ss_pred CccCCcCCCC
Confidence 3458999998
No 34
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, ME binding protein; HET: 3CM; 2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB: 1q5v_A* 2hzv_A 3od2_A*
Probab=25.54 E-value=69 Score=21.88 Aligned_cols=34 Identities=9% Similarity=0.125 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhhcCceeccChhhHHHHHH-HHHHhH
Q 033909 44 EIMRKFSEQYARRSDTFFCVDKSVTSVVIK-GLADHK 79 (109)
Q Consensus 44 E~m~~f~ekyAek~Gy~fNPD~evt~~Vie-GLa~NK 79 (109)
+.+.++++.++++.|| -| -.+++...++ .|.+++
T Consensus 10 ~~ll~~lD~~v~~~~y-~s-RSe~Ir~air~~l~~~~ 44 (133)
T 2hza_A 10 DDLLETLDSLSQRRGY-NN-RSEAIRDILRSALAQEA 44 (133)
T ss_dssp HHHHHHHHHHHHHTTC-CS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CC-HHHHHHHHHHHHHHHhh
Confidence 4567788999999997 34 3444444444 454443
No 35
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=25.52 E-value=31 Score=20.97 Aligned_cols=19 Identities=5% Similarity=-0.197 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhhcCceecc
Q 033909 45 IMRKFSEQYARRSDTFFCV 63 (109)
Q Consensus 45 ~m~~f~ekyAek~Gy~fNP 63 (109)
++++.+.+.|++.||.-|.
T Consensus 33 et~~rI~~aa~~lgY~pn~ 51 (65)
T 1uxc_A 33 KTVEKVMAVVREHNYHPNA 51 (65)
T ss_dssp HHHHHHHHHHHHHTCCCC-
T ss_pred HHHHHHHHHHHHhCCCccH
Confidence 3445567778889998664
No 36
>1mkf_A M3; decoy receptor, PSI, protein structure initiative; 2.10A {Murid herpesvirus 4} SCOP: b.116.1.1 PDB: 1ml0_A 2nyz_A 2nz1_A
Probab=24.36 E-value=17 Score=30.01 Aligned_cols=17 Identities=12% Similarity=0.200 Sum_probs=12.8
Q ss_pred hCCCCCCCccCcchhhh
Q 033909 82 LGAPLCPCIMTTKLLKL 98 (109)
Q Consensus 82 YG~~~CPCRl~~g~re~ 98 (109)
-|.+-||||+..|.-+.
T Consensus 332 ~~~~~CP~~~~~G~~q~ 348 (382)
T 1mkf_A 332 TSSEQCPIRLVEGQSQN 348 (382)
T ss_dssp CCCSSCCEEEEECSSTT
T ss_pred cCCCCCceEEeecCcce
Confidence 36788999999886543
No 37
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=23.85 E-value=82 Score=23.99 Aligned_cols=20 Identities=5% Similarity=0.147 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhhcCceeccC
Q 033909 45 IMRKFSEQYARRSDTFFCVD 64 (109)
Q Consensus 45 ~m~~f~ekyAek~Gy~fNPD 64 (109)
++++-++.+....||.||++
T Consensus 307 ~v~~~l~~~g~~~g~I~~~g 326 (354)
T 3cyv_A 307 EVATILAGFGHGEGHVFNLG 326 (354)
T ss_dssp HHHHHHTTTTTSSCEEBCBS
T ss_pred HHHHHHHHhCCCCCeEEecC
Confidence 34444444343458999998
No 38
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1
Probab=22.84 E-value=1e+02 Score=23.42 Aligned_cols=42 Identities=2% Similarity=0.044 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhhcCceeccChhh----HHHHHHHHHHhHHhhCC
Q 033909 42 SVEIMRKFSEQYARRSDTFFCVDKSV----TSVVIKGLADHKDSLGA 84 (109)
Q Consensus 42 ~lE~m~~f~ekyAek~Gy~fNPD~ev----t~~VieGLa~NK~rYG~ 84 (109)
-.+++++-++.+.. .||.||++-.+ -..-++-+.+--.+|||
T Consensus 308 i~~~v~~~l~~~~~-~g~I~~~g~gi~~~~~~enl~a~ve~v~~~~~ 353 (353)
T 1j93_A 308 ITNRINDTVKKAGK-GKHILNLGHGIKVGTPEENFAHFFEIAKGLRY 353 (353)
T ss_dssp HHHHHHHHHHHHCS-SSEEBCBSSCCCTTCCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCC-CCEEEeCCCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 33445555555544 69999998543 33344444444455554
No 39
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=22.61 E-value=58 Score=20.82 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=19.7
Q ss_pred cCCCCHHHHHHHHHHHHHH-hhhcCce
Q 033909 35 QVEPSEKSVEIMRKFSEQY-ARRSDTF 60 (109)
Q Consensus 35 ~~~~see~lE~m~~f~eky-Aek~Gy~ 60 (109)
|++.++++++++++..+.+ ....|+.
T Consensus 1 Ms~lt~eqi~el~~~F~~~D~d~~G~I 27 (148)
T 2lmt_A 1 MSELTEEQIAEFKDAFVQFDKEGTGKI 27 (148)
T ss_dssp CCSCCSHHHHHHHHHHHHHHCSSCCEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCeE
Confidence 5788999999998887777 4556653
No 40
>2oie_A RS21-C6; helix, hydrolase; 2.20A {Mus musculus} SCOP: a.204.1.2 PDB: 2oig_A*
Probab=21.45 E-value=62 Score=20.99 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=26.8
Q ss_pred eccCCCCHHHHHHHHHHHHHHhhhcCce-e-ccChhhHHHHHHHH
Q 033909 33 RAQVEPSEKSVEIMRKFSEQYARRSDTF-F-CVDKSVTSVVIKGL 75 (109)
Q Consensus 33 ~~~~~~see~lE~m~~f~ekyAek~Gy~-f-NPD~evt~~VieGL 75 (109)
|+.+-|..-+++++.+.+.+++...+|- + +| ..+...|.+=+
T Consensus 6 ~~~~~p~~m~~~~lq~~~~~~~~~~dw~~~~~~-~~~~~~L~eE~ 49 (111)
T 2oie_A 6 RPFRFSPEPTLEDIRRLHAEFAAERDWEQFHQP-RNLLLALVGEV 49 (111)
T ss_dssp CCCCCCSCSCHHHHHHHHHHHHHTTTCGGGCCH-HHHHHHHHHHH
T ss_pred CCCCCCccccHHHHHHHHHHHHHHCCCcccCCH-HHHHHHHHHHH
Confidence 4444455556788899999998888985 3 44 34455454433
No 41
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3
Probab=21.41 E-value=2e+02 Score=22.46 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCceeccC--hhhHHHHHHHHHHhHH
Q 033909 37 EPSEKSVEIMRKFSEQYARRSDTFFCVD--KSVTSVVIKGLADHKD 80 (109)
Q Consensus 37 ~~see~lE~m~~f~ekyAek~Gy~fNPD--~evt~~VieGLa~NK~ 80 (109)
+.+.+.+++|.+.+++|.++.....|.+ ++.++.+.+-|...++
T Consensus 320 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~tn~~~l~~~a~~L~~e~~ 365 (373)
T 1oxw_A 320 DASEANMELLVQVGENLLKKPVSEDNPETYEEALKRFAKLLSDRKK 365 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHTSBSSSSCCCBHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHhh
Confidence 4568899999999999999977766664 5566666666666553
No 42
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=21.29 E-value=1.2e+02 Score=21.19 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhhhcCceeccChhhHHHHHHHHHHhHHhhCCC
Q 033909 40 EKSVEIMRKFSEQYARRSDTFFCVDKSVTSVVIKGLADHKDSLGAP 85 (109)
Q Consensus 40 ee~lE~m~~f~ekyAek~Gy~fNPD~evt~~VieGLa~NK~rYG~~ 85 (109)
.+-.+.+.+|+-+|....+.-=-+--......|..|+-|-..||..
T Consensus 45 ~~ar~~ind~vsrYRr~~~v~g~~Sf~tm~tAlNaLAGHY~s~g~~ 90 (115)
T 2kmf_A 45 DTARGQINDYISRYRRKGDAGGLKSFTTMQTALNSLAGYYTSYGAR 90 (115)
T ss_dssp HHHHHHHHHHHHHTHHHHCSSSCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhhcCCC
Confidence 4556789999999998876543344444557899999999999943
No 43
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=20.88 E-value=72 Score=20.37 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=14.6
Q ss_pred ccCCCCHHHHHHHHHHHHHHhh
Q 033909 34 AQVEPSEKSVEIMRKFSEQYAR 55 (109)
Q Consensus 34 ~~~~~see~lE~m~~f~ekyAe 55 (109)
....|.+++ +++++|.++.|+
T Consensus 117 ~~~~p~~~d-~~~~~~~~~l~~ 137 (138)
T 5nul_A 117 VQNEPDEAE-QDCIEFGKKIAN 137 (138)
T ss_dssp EESSCGGGH-HHHHHHHHHHHT
T ss_pred EecCCCHHH-HHHHHHHHHHhc
Confidence 345567777 888888777764
No 44
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=20.86 E-value=1e+02 Score=17.75 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCc
Q 033909 37 EPSEKSVEIMRKFSEQYARRSDT 59 (109)
Q Consensus 37 ~~see~lE~m~~f~ekyAek~Gy 59 (109)
..++++++.+-.|+...+++.-|
T Consensus 71 ~ls~~ei~~l~~yl~~l~~~~~w 93 (93)
T 3dr0_A 71 RLSDADIANVAAYIADQAENNKW 93 (93)
T ss_dssp TBCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHhcCCC
Confidence 47899999999999998876544
No 45
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=20.74 E-value=25 Score=25.68 Aligned_cols=33 Identities=3% Similarity=-0.080 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHHHHhhh--cCceeccChhhH
Q 033909 36 VEPSEKSVEIMRKFSEQYARR--SDTFFCVDKSVT 68 (109)
Q Consensus 36 ~~~see~lE~m~~f~ekyAek--~Gy~fNPD~evt 68 (109)
-+.++++++++.+++++..+- =-|+||.-+++.
T Consensus 59 ~~Lt~~ei~~l~~~i~~p~~~~iP~w~lNr~kD~~ 93 (155)
T 2xzm_M 59 GLLTEDQCNKITDLIADPEAHGIPTWLLNRINDFK 93 (155)
T ss_dssp SCSCHHHHHHHHHHHHSHHHHCCCGGGCSEEEETT
T ss_pred ccCCHHHHHHHHHHHhCccccCCCHHHhhcccccC
Confidence 468999999999998864332 248888754443
No 46
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=20.62 E-value=58 Score=24.91 Aligned_cols=33 Identities=3% Similarity=0.009 Sum_probs=22.3
Q ss_pred eeccCCCCHHHHHHHHHHHHHHhhhcCceeccC
Q 033909 32 IRAQVEPSEKSVEIMRKFSEQYARRSDTFFCVD 64 (109)
Q Consensus 32 ~~~~~~~see~lE~m~~f~ekyAek~Gy~fNPD 64 (109)
+++..-....+.|++++.+++..+..||.||++
T Consensus 292 ldp~~~l~~g~~e~i~~~v~~~l~~~g~I~~~G 324 (348)
T 4ay7_A 292 VSSPFTLLPGPVDKIKAEAKEALEGGIDVLAPG 324 (348)
T ss_dssp ECCCCCCTTCCHHHHHHHHHHHHHTTCSEEEES
T ss_pred CCChHhhcCCCHHHHHHHHHHHHhCCCCEEeCC
Confidence 444333333345666777888888999999975
Done!